Citrus Sinensis ID: 044575

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAFD
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEcccccccccccccEEEEEEEcccccEEEEEEcEEEEEccccccccccccccccccccEEEEEEcccccccccccEEEEEcccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccEEEcccccEEEEccEEEEccEEEEEEcEEEEcccccccccEEcccccccccccEEEcccccccEEEEEcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcHHccccccccccccHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccEHHHHHHHHHHHHccccEEEEccccccEccEEEccccccccccccHHHHEEEccccHHcccccccccccccccccccccHHHHHHHHHHHHHHcccHHEEEEEEEEEEEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEEEEccccccccccccccHccccccEEccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHEHcccccccccccccccccccccccccHcHcccccEEEEEcccEEEEEEEEEEcccEEEccccccccEEEEEcccccccHHccccccccccEEEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHcccHHHccccccc
Coil and Loop (DISEMBL)
mvsddhqqcaqsknvcvigagPSGLVAARELRKEGHRVVVLEqnhdvggqwlydpntdqtevhSSVYASLrltspreimgytdfpfvlkkgrdvrrfpghKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAtghysyprlpsikgmdkWKRKQMHshiyrvpepfrNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKhnnlhlhpqidclredgrvtfvdgcwvtadtilyctgysysfpfldtkgivvvdddrvgplyehtfppslapslsfvgiprkligfpfFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFyhsrdvagipkhnthdianfeycdryadqigfphLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEAlqsphftqlnaqafd
Flexible Loop (DISEMBL)
MVSDDHQQCAQsknvcvigagPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLrltspreimgytDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVvatghysyprlpsikgMDKWKRKQMHSHiyrvpepfrNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAFD
Low Complexity Region (SEG)
MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIkwvvkskekkadkvveevfdavvvaTGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAFD
Disordered region (IsUnstruct)
*************NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELL******************
Disordered Region (DISOPRED)
***************CVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNA****
Disordered Region (DISEMBL)
**********QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAFD
Disordered Region (DISPRO)
***********SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	454	2.2.26 [Sep-21-2011]
Q9FF12	460	Flavin-containing monooxy	yes	no	0.960	0.947	0.751	0.0
Q9FLK4	461	Flavin-containing monooxy	no	no	0.964	0.950	0.734	0.0
Q9SXD5	450	Flavin-containing monooxy	no	no	0.933	0.942	0.510	1e-122
Q9C8U0	450	Flavin-containing monooxy	no	no	0.933	0.942	0.507	1e-121
Q9SXE1	462	Flavin-containing monooxy	no	no	0.929	0.913	0.465	1e-112
Q9FWW9	465	Flavin-containing monooxy	no	no	0.947	0.924	0.485	1e-110
Q94BV5	452	Flavin-containing monooxy	no	no	0.931	0.935	0.486	1e-108
Q9SS04	459	Flavin-containing monooxy	no	no	0.931	0.921	0.461	1e-106
Q93Y23	461	Flavin-containing monooxy	no	no	0.944	0.930	0.472	1e-105
A8MRX0	459	Flavin-containing monooxy	no	no	0.918	0.908	0.474	1e-103

>sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE=2 SV=1

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/455 (75%), Positives = 393/455 (86%), Gaps = 19/455 (4%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-------- 61
           ++SK VCVIGAGP+GLV+ARELRKEGH+VVVLEQN DVGGQW Y PN ++ +        
Sbjct: 11  SRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVEEEDPLGRSSGS 70

Query: 62  ------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG 115
                 VHSS+Y+SLRLTSPREIMGY+DFPF+ KKGRD+RRFPGHKELWLYLKDF + FG
Sbjct: 71  INGELKVHSSIYSSLRLTSPREIMGYSDFPFLAKKGRDMRRFPGHKELWLYLKDFSEAFG 130

Query: 116 LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175
           LREMIRFN RVE+VG     E    +D+ KW+V+S+EK + KV+EE+FDAVVVATGHYS+
Sbjct: 131 LREMIRFNVRVEFVG-----EKEEEDDVKKWIVRSREKFSGKVMEEIFDAVVVATGHYSH 185

Query: 176 PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235
           PRLPSIKGMD WKRKQ+HSH+YRVP+PFRNEVVVVVGNS+SGQDISMELVEVAKEVHLSA
Sbjct: 186 PRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245

Query: 236 KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFL 295
           K+L+IS GLSKVISKH NL +HPQI+ L +DG+V FVDG WV ADTILYCTGYSY FPFL
Sbjct: 246 KTLDISSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTGYSYKFPFL 305

Query: 296 DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
           ++KG + VDDDRVGPL+EHTFPP L+PSLSFVGIPRKLIGFPFFE+QAKWIAQ+LSGK +
Sbjct: 306 ESKGRIEVDDDRVGPLFEHTFPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSS 365

Query: 356 LPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISA 415
           LPS DQM+QSV EFY SRD+AG+PKHNTHDIA+F YCD+YAD +GFPHLE+WRK LC+SA
Sbjct: 366 LPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADFTYCDKYADYVGFPHLEDWRKLLCLSA 425

Query: 416 LVNSDANLETYRDSWDDHELLQEALQSPHFTQLNA 450
           L NS  NLETYRDSWDDHELLQEALQS HFT  N+
Sbjct: 426 LNNSQENLETYRDSWDDHELLQEALQSSHFTNFNS 460

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis thaliana GN=At5g61290 PE=2 SV=1

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/449 (73%), Positives = 383/449 (85%), Gaps = 11/449 (2%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-------- 61
           +QSK VCVIGAGPSGLV+AREL+KEGH+VVV+EQNHDVGGQWLY PN D+ +        
Sbjct: 11  SQSKTVCVIGAGPSGLVSARELKKEGHKVVVMEQNHDVGGQWLYQPNVDEEDTLGKTKTL 70

Query: 62  -VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMI 120
            VHSSVY+SLRL SPRE+MG++DFPF+ K+GRD RRFPGH+EL LYLKDFCQ FGLREMI
Sbjct: 71  KVHSSVYSSLRLASPREVMGFSDFPFIAKEGRDSRRFPGHEELLLYLKDFCQVFGLREMI 130

Query: 121 RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPS 180
           RFN RVE+VGM++  +    +D+ KW+VKS  KK+ +V+EEVFDAVVVA+GHYSYPRLP+
Sbjct: 131 RFNVRVEFVGMVN-EDDDDDDDVKKWMVKSV-KKSGEVMEEVFDAVVVASGHYSYPRLPT 188

Query: 181 IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240
           IKGMD WKRKQ+HSHIYRVPEPF +EVVVVVG S+SGQDIS+ELVEVAKEVHLS KSL+I
Sbjct: 189 IKGMDLWKRKQLHSHIYRVPEPFCDEVVVVVGCSMSGQDISIELVEVAKEVHLSTKSLDI 248

Query: 241 SEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGI 300
             GLSKVI KH NLHLHPQI+ L EDGRV F DG  + ADTILYCTGY Y FPFL++KG 
Sbjct: 249 PPGLSKVIEKHQNLHLHPQIESLEEDGRVIFEDGSCIVADTILYCTGYEYKFPFLESKGR 308

Query: 301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWD 360
           V +DD+RVGPL+EHTF PSL+P LSFVGIPRKLIGFPFFESQAKWIA+LLSGK +LPS D
Sbjct: 309 VEIDDNRVGPLFEHTFSPSLSPFLSFVGIPRKLIGFPFFESQAKWIAKLLSGKTSLPSSD 368

Query: 361 QMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSD 420
           QMMQS+ +FY +R+  GIPK NTHDIA+F Y D+YAD IGFPHLEEWRK LC+SA++NS 
Sbjct: 369 QMMQSISDFYLAREADGIPKRNTHDIADFNYSDKYADYIGFPHLEEWRKVLCLSAILNSI 428

Query: 421 ANLETYRDSWDDHELLQEALQSPHFTQLN 449
            NLETYRDSWDD +LLQE LQ P+FTQL+
Sbjct: 429 ENLETYRDSWDDDDLLQETLQDPYFTQLS 457

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/445 (51%), Positives = 297/445 (66%), Gaps = 21/445 (4%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP---NTDQT 60
            +S +V VIGAGP+GLVAARELR+EGH VVV E+   VGG W+Y      DP   +  ++
Sbjct: 8   TRSHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRS 67

Query: 61  EVHSSVYASLRLTSPREIMGYTDFPFVLKKG--RDVRRFPGHKELWLYLKDFCQRFGLRE 118
            VHSSVY SLR+   RE  GY DFPFV++ G  RD RRFP H E+  YLKDF + FG+ E
Sbjct: 68  VVHSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDPRRFPSHGEVLAYLKDFAKEFGIEE 127

Query: 119 MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRL 178
           M+RF T V  V +    E  IG    KW ++S EK+     +E++DAVVV  GHY  PRL
Sbjct: 128 MVRFETEV--VKVSPAAEEGIG----KWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRL 181

Query: 179 PSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238
             I G+  W  K+MHSH YR+PEPFR++VVV++GNS S +DIS ++  VAKEVH++ +S 
Sbjct: 182 AQIPGISSWPGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAKEVHVACRS- 240

Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTK 298
           N ++   K  + +NNL  H  I+ + EDG V + +G  ++ D I++CTGY Y FPFLDT 
Sbjct: 241 NPADTFIKQ-TGYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTN 299

Query: 299 GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPS 358
           GIV VDD+RVGPLY+  FPP+ AP LSF+GIP +++ FP FE Q+KWIA +LSG+  LPS
Sbjct: 300 GIVTVDDNRVGPLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPS 359

Query: 359 WDQMMQSVKEFYHSRDVAGIPKHNTHDIAN--FEYCDRYADQIGFPHLEEWRKGLCISAL 416
            + MM  +K FY + +V GIPK  TH + N  FEY +  A Q G    EEWRK +C++  
Sbjct: 360 KEDMMIEIKTFYSTLEVQGIPKRYTHRMGNTQFEYYNWLASQCGCSETEEWRKEMCLANG 419

Query: 417 VNSDANLETYRDSWDDHELLQEALQ 441
           V  +A+ ETYRD WDDH L+ EA Q
Sbjct: 420 VRKEAHPETYRDEWDDHHLVSEAYQ 444

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/445 (50%), Positives = 296/445 (66%), Gaps = 21/445 (4%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP---NTDQT 60
            +S +V VIGAGP+GLVAARELR+EGH VVV E+   VGG W+Y      DP   +  ++
Sbjct: 8   TRSHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRS 67

Query: 61  EVHSSVYASLRLTSPREIMGYTDFPFVLKKG--RDVRRFPGHKELWLYLKDFCQRFGLRE 118
            VHSSVY SLR+   RE  GY DFPFV++ G  RD RRFP H E+  YLKDF + FG+ E
Sbjct: 68  VVHSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAKEFGIEE 127

Query: 119 MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRL 178
           M+RF T V  V +    E  IG    KW ++S EK+     +E++DAVVV  GHY  PRL
Sbjct: 128 MVRFETEV--VKVSPAAEEGIG----KWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRL 181

Query: 179 PSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238
             I G+  W  K+MHSH YR+PEPFR++V V++GNS S +DIS ++  VAKEVH++ +S 
Sbjct: 182 AQIPGISSWPGKEMHSHNYRIPEPFRDKVAVLIGNSSSAEDISRDIARVAKEVHVACRS- 240

Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTK 298
           N ++   K  + +NNL  H  I+ + EDG V + +G  ++ D I++CTGY Y FPFLDT 
Sbjct: 241 NPADTFIKQ-TGYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTN 299

Query: 299 GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPS 358
           GIV VDD+RVGPLY+  FPP+ AP LSF+GIP +++ FP FE Q+KWIA +LSG+  LPS
Sbjct: 300 GIVTVDDNRVGPLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPS 359

Query: 359 WDQMMQSVKEFYHSRDVAGIPKHNTHDIAN--FEYCDRYADQIGFPHLEEWRKGLCISAL 416
            + MM  +K FY + +V GIPK  TH + N  FEY +  A Q G    EEWRK +C++  
Sbjct: 360 KEDMMIEIKTFYSTLEVQGIPKRYTHRMGNTQFEYDNWLASQCGCSETEEWRKEMCLANG 419

Query: 417 VNSDANLETYRDSWDDHELLQEALQ 441
           V  +A+ ETYRD WDDH L+ EA Q
Sbjct: 420 VRKEAHPETYRDEWDDHHLVSEAYQ 444

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 283/447 (63%), Gaps = 25/447 (5%)

Query: 7   QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD-------- 58
           Q    SK+V VIGAGP+GL+ +RELR+EGH VVV E+   VGG W+Y P +D        
Sbjct: 5   QNQITSKHVAVIGAGPAGLITSRELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDP 64

Query: 59  -QTEVHSSVYASLRLTSPREIMGYTDFPFVLK---KGRDVRRFPGHKELWLYLKDFCQRF 114
            +++VHSS+Y SLR   PRE MG  DFPF+ +   + RD RR+P H+E+  Y++DF + F
Sbjct: 65  TRSKVHSSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREF 124

Query: 115 GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174
            + EMIRF T V  V  +D G          W V+SK      + +E++DAVVV  GHY+
Sbjct: 125 KIEEMIRFETEVVRVEPVDNG---------NWRVQSK-NSGGFLEDEIYDAVVVCNGHYT 174

Query: 175 YPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234
            P +  I G+  W  KQ+HSH YRVP+PF NEVVVV+GN  SG DIS ++ +VAKEVH++
Sbjct: 175 EPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAKEVHIA 234

Query: 235 AKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPF 294
           +++        K+    NNL +H +ID   EDG + F +G  + AD+I+YCTGY Y+FPF
Sbjct: 235 SRARE-PHTYEKISVPQNNLWMHSEIDTTHEDGSIVFKNGKVIFADSIVYCTGYKYNFPF 293

Query: 295 LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKR 354
           L+T G + +D+ RV PLY+H FPP+LAP L+FVG+P   I F  FE Q+KW+A +LSG+ 
Sbjct: 294 LETNGYLRIDEKRVEPLYKHVFPPALAPGLAFVGLPAMGIVFVMFEIQSKWVAAVLSGRV 353

Query: 355 TLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANF--EYCDRYADQIGFPHLEEWRKGLC 412
           TLPS D+MM+ +  +Y S D  GIPK +TH I     EY +  A + G   +E WR    
Sbjct: 354 TLPSTDKMMEDINAWYASLDALGIPKRHTHTIGRIQSEYLNWVAKESGCELVERWRGQEV 413

Query: 413 ISALVNSDANLETYRDSWDDHELLQEA 439
               +   A+ ETYRD WDD EL++EA
Sbjct: 414 DGGYLRLVAHPETYRDEWDDDELIEEA 440

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FWW9|GSXL2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 2 OS=Arabidopsis thaliana GN=At1g12200 PE=2 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/453 (48%), Positives = 294/453 (64%), Gaps = 23/453 (5%)

Query: 2   VSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP 55
           ++  H     S++V VIGAG +GLVAARELR+EGH VVVLE+   +GG W Y      DP
Sbjct: 1   MATSHPDPTTSRHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDP 60

Query: 56  -NTDQTE--VHSSVYASLRLTSPREIMGYTDFPFVLKK---GRDVRRFPGHKELWLYLKD 109
            + D T   VHSS+Y SLR   PRE MG+TDFPF  +     RD RR P H E+  YL+D
Sbjct: 61  LSLDPTRPVVHSSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRD 120

Query: 110 FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169
           F + F + EM+RF T V     +       G +  KW V+S+   +D VV+E++DAVVV 
Sbjct: 121 FAKEFDIEEMVRFETEVVKAEQVAAE----GEERGKWRVESR--SSDGVVDEIYDAVVVC 174

Query: 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK 229
            GHY+ PR   I G+D W  KQ+HSH YRVP+ F+++VV+V+G+S SG DI  ++ +VAK
Sbjct: 175 NGHYTEPRHALITGIDSWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAK 234

Query: 230 EVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYS 289
           EVH+S++S   S    + ++ + NL LH  I   REDG V F +G  + ADTI++CTGY 
Sbjct: 235 EVHVSSRS--TSPDTYEKLTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHCTGYK 292

Query: 290 YSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQL 349
           Y FPFLDTKG V VDD+RVGPLY+H FPP+LAPSLSF+G+P ++  FP FE Q+KW+A +
Sbjct: 293 YYFPFLDTKGEVTVDDNRVGPLYKHVFPPALAPSLSFIGLPWQITPFPMFELQSKWVAAV 352

Query: 350 LSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTH---DIANFEYCDRYADQIGFPHLEE 406
           LSG+ +LPS D+MM+  K FY   + +GIPK  TH   D + FEY +  ADQ  +P +E+
Sbjct: 353 LSGRVSLPSQDEMMEDTKAFYDKLEASGIPKRYTHLMPDDSQFEYDNWLADQCEYPRIEK 412

Query: 407 WRKGLCISALVNSDANLETYRDSWDDHELLQEA 439
           WR+ +         A   TYRD+WDD  L+ EA
Sbjct: 413 WREQMFYIGFKRIYAQSSTYRDNWDDDHLIVEA 445

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/446 (48%), Positives = 284/446 (63%), Gaps = 23/446 (5%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP---NTDQTE 61
           +S +V VIGAG +GLVAARELR+EGH VVV E+   VGG W+Y      DP   +  ++ 
Sbjct: 9   RSHHVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSV 68

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLK----KGRDVRRFPGHKELWLYLKDFCQRFGLR 117
           VHSSVY SLR   PRE MGY DFPFV++    + RD RRFP H E+  YL+DF + F + 
Sbjct: 69  VHSSVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIE 128

Query: 118 EMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPR 177
           EMIRF+T V  V +    E   G    KW ++S EK+   + +E++DAVVV  GHY  PR
Sbjct: 129 EMIRFDTAV--VKVAPAAEEGSG----KWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPR 182

Query: 178 LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237
              I G+  W  K+MHSH YR+PEPFR++VVV++GNS S  DIS ++  VAKEVH++ +S
Sbjct: 183 HAEIPGISSWPGKEMHSHNYRIPEPFRDQVVVLIGNSASADDISRDIARVAKEVHVACRS 242

Query: 238 LNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDT 297
                 + +    ++NL +H  I+ + EDG V F +G  ++ D I++CTGY Y FPFL+T
Sbjct: 243 NAADTYIER--PGYSNLWMHSMIESVHEDGSVVFQNGKTISVDVIMHCTGYKYHFPFLET 300

Query: 298 KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLP 357
            G V VDD+RVGPLY+  F P+ AP LSFVGIP K++ FP FE Q+KWIA +LSG+  LP
Sbjct: 301 NGNVTVDDNRVGPLYKDVFSPAFAPWLSFVGIPWKVVPFPMFELQSKWIAGVLSGRIPLP 360

Query: 358 SWDQMMQSVKEFYHSRDVAGIPKHNTHD--IANFEYCDRYADQIGFPHLEEWRKGLCISA 415
           S + MM  +K  Y + D  GI K  TH   I+ FEY    A Q G    EEWRK +  + 
Sbjct: 361 SKEDMMMEIKTLYSTLDAQGIAKRYTHQMGISQFEYNSWLASQCGCSETEEWRKEMYFAT 420

Query: 416 LVNSDANLETYRDSWDDHELLQEALQ 441
            V   A+ ETYRD WDDH L+ +A Q
Sbjct: 421 GVKKRAHPETYRDEWDDHHLVSQAYQ 446

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 283/449 (63%), Gaps = 26/449 (5%)

Query: 7   QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP---NT 57
           Q    SK+V VIGAG +GLV ARELR+EGH VVV ++   VGG W Y      DP   +T
Sbjct: 5   QNTICSKHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDT 64

Query: 58  DQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK---GRDVRRFPGHKELWLYLKDFCQRF 114
            +T VH+S+Y SLR   PRE MG+TDFPFV +     RD RR+P H+E+  YL+DF + F
Sbjct: 65  TRTIVHTSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREF 124

Query: 115 GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174
            + EM+RF T V       C E + G    KW V+SK         E+FDAVVV +GH++
Sbjct: 125 KIEEMVRFETEVV------CVEPVNG----KWSVRSK-NSVGFAAHEIFDAVVVCSGHFT 173

Query: 175 YPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234
            P +  I G+  W  KQ+HSH YRVP PF NEVVVV+GN  SG DIS ++ +VAKEVH++
Sbjct: 174 EPNVAHIPGIKSWPGKQIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIA 233

Query: 235 AKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPF 294
           +++   S+   K+    NNL +H +ID   +DG + F +G  V ADTI++CTGY Y FPF
Sbjct: 234 SRASE-SDTYQKLPVPQNNLWVHSEIDFAHQDGSILFKNGKVVYADTIVHCTGYKYYFPF 292

Query: 295 LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKR 354
           L+T G + ++++RV PLY+H F P+LAPSLSF+G+P   I F  FE Q+KW+A +LSG+ 
Sbjct: 293 LETNGYININENRVEPLYKHVFLPALAPSLSFIGLPGMAIQFVMFEIQSKWVAAVLSGRV 352

Query: 355 TLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANF--EYCDRYADQIGFPHLEEWRKGLC 412
            LPS D+MM+ + E+Y + DV GIPK +TH +     EY +  A++     +E WR    
Sbjct: 353 ILPSQDKMMEDIIEWYATLDVLGIPKRHTHKLGKISCEYLNWIAEECHCSPVENWRIQEV 412

Query: 413 ISALVNSDANLETYRDSWDDHELLQEALQ 441
                   ++ E YRD WDD +L++EA +
Sbjct: 413 ERGFQRMVSHPEIYRDEWDDDDLMEEAYK 441

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/457 (47%), Positives = 288/457 (63%), Gaps = 28/457 (6%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE--------- 61
            S++V VIGAG +GLVAARELR+EGH VVVL++   VGG W+Y P T+  E         
Sbjct: 9   NSQHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPI 68

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLK---KGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
           VHSSVY SLR   PRE MGY DFPFV +     RD RR+P H+E+  YL+DF   F + E
Sbjct: 69  VHSSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEE 128

Query: 119 MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRL 178
           MIRF T V  V      E + G    KW V+SK        +E++DAVV+  GH++ P +
Sbjct: 129 MIRFETEVLRV------EPVNG----KWRVQSKTGGGFSN-DEIYDAVVMCCGHFAEPNI 177

Query: 179 PSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238
             I G++ W  +Q HSH YRVP+PF++EVVVV+GN  SG DIS ++ +VAKEVH+++++ 
Sbjct: 178 AQIPGIESWPGRQTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRA- 236

Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTK 298
           + S    K    +NNL +H +ID   EDG + F +G  V ADTI++CTGY Y FPFL+T 
Sbjct: 237 SKSNTFEKRPVPNNNLWMHSEIDTAHEDGTIVFKNGKVVHADTIVHCTGYKYYFPFLETN 296

Query: 299 GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPS 358
             + VDD+RV PLY+H FPP+LAP LSF+G+P   + F  FE Q+KW+A +LSG+ TLPS
Sbjct: 297 NYMRVDDNRVEPLYKHIFPPALAPGLSFIGLPAMGLQFYMFEVQSKWVAAVLSGRVTLPS 356

Query: 359 WDQMMQSVKEFYHSRDVAGIPKHNTHDI--ANFEYCDRYADQIGFPHLEEWRKGLCISAL 416
            D+MM  +K  Y +++  GIPK  TH +  +  EY D  AD  GFPH+E WR        
Sbjct: 357 VDEMMDDLKLSYETQEALGIPKRYTHKLGKSQCEYLDWIADLCGFPHVEHWRDQEVTRGY 416

Query: 417 VNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAF 453
                  ET+RD WDD +L++EA +   F +LN   F
Sbjct: 417 QRLGNQPETFRDEWDDDDLMEEAYED--FARLNLINF 451

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A8MRX0|GSOX5_ARATH Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/447 (47%), Positives = 286/447 (63%), Gaps = 30/447 (6%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNT---------DQTE 61
            S NV VIGAG +GLVAARELR+E H VVV E++  VGG W+Y PN+         ++T 
Sbjct: 9   NSLNVAVIGAGAAGLVAARELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTI 68

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLK----KGRDVRRFPGHKELWLYLKDFCQRFGLR 117
           VHSSVY SLR   PRE MGY DFPFV +    + RD RR+P H+E+  YL+DF + F L 
Sbjct: 69  VHSSVYDSLRTNLPRECMGYRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLV 128

Query: 118 EMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV-EEVFDAVVVATGHYSYP 176
           EM+RF T V          +++  +  KW V+SK   +D +  +E+FDAVVV  GHY+ P
Sbjct: 129 EMVRFKTEV----------VLVEPEDKKWRVQSK--NSDGISKDEIFDAVVVCNGHYTEP 176

Query: 177 RLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK 236
           R+  + G+D W  KQ+HSH YRVP+ F+++VVVV+GN  SG DIS ++  VAKEVH++++
Sbjct: 177 RVAHVPGIDSWPGKQIHSHNYRVPDQFKDQVVVVIGNFASGADISRDITGVAKEVHIASR 236

Query: 237 SLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLD 296
           S N S+  SK +   NNL LH  I+ + EDG + F +G  V ADTI++CTGY Y FPFL+
Sbjct: 237 S-NPSKTYSK-LPGSNNLWLHSMIESVHEDGTIVFQNGKVVQADTIVHCTGYKYHFPFLN 294

Query: 297 TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTL 356
           T G + V+D+ VGPLYEH FPP+LAP LSF+G+P   + F  FE Q+KW+A  LSG+ TL
Sbjct: 295 TNGYITVEDNCVGPLYEHVFPPALAPGLSFIGLPWMTLQFFMFELQSKWVAAALSGRVTL 354

Query: 357 PSWDQMMQSVKEFYHSRDVAGIPKHNTHDI--ANFEYCDRYADQIGFPHLEEWRKGLCIS 414
           PS ++MM+ V  +Y  R+  G PK  TH +     +Y +  A+QIG P  E+WR      
Sbjct: 355 PSEEKMMEDVTAYYAKREAFGQPKRYTHRLGGGQVDYLNWIAEQIGAPPGEQWRYQEING 414

Query: 415 ALVNSDANLETYRDSWDDHELLQEALQ 441
                    +T+RD WDD  L+ EA +
Sbjct: 415 GYYRLATQSDTFRDKWDDDHLIVEAYE 441

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
255547297	457	dimethylaniline monooxygenase, putative	0.982	0.975	0.818	0.0
224119038	458	predicted protein [Populus trichocarpa]	0.962	0.954	0.808	0.0
225457309	454	PREDICTED: flavin-containing monooxygena	0.958	0.958	0.789	0.0
297810881	460	flavin-containing monooxygenase family p	0.960	0.947	0.756	0.0
15240866	460	flavin-containing monooxygenase-like pro	0.960	0.947	0.751	0.0
225457311	464	PREDICTED: flavin-containing monooxygena	0.958	0.937	0.753	0.0
297733921	1100	unnamed protein product [Vitis vinifera]	0.958	0.395	0.753	0.0
359491303	796	PREDICTED: flavin-containing monooxygena	0.955	0.545	0.753	0.0
449439639	494	PREDICTED: flavin-containing monooxygena	0.991	0.910	0.712	0.0
449487093	494	PREDICTED: flavin-containing monooxygena	0.991	0.910	0.708	0.0

>gi|255547297|ref|XP_002514706.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223546310|gb|EEF47812.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/462 (81%), Positives = 408/462 (88%), Gaps = 16/462 (3%)

Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT 60
           MVSD      +SKNVCVIGAGPSGLVAARELRKEGHRVV+LEQ  DVGGQWLY+ N +  
Sbjct: 1   MVSD----FTRSKNVCVIGAGPSGLVAARELRKEGHRVVLLEQKDDVGGQWLYEANVESE 56

Query: 61  ---------EVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFC 111
                    EVHSS+YASLRL SPREIMGYTDFPF++KKGRD+RRFPGH+ELWLYLKDFC
Sbjct: 57  HPLGKKKFLEVHSSIYASLRLVSPREIMGYTDFPFLVKKGRDMRRFPGHRELWLYLKDFC 116

Query: 112 QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171
             FGLREMIRFNTRVEYVGMLD  EL   NDL KWVVKSKEK ++K VEEVFDAVVVATG
Sbjct: 117 DSFGLREMIRFNTRVEYVGMLDYDEL--RNDL-KWVVKSKEKDSEKAVEEVFDAVVVATG 173

Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV 231
           HYS+P+LP IKGM+ WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV
Sbjct: 174 HYSHPKLPFIKGMETWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV 233

Query: 232 HLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYS 291
           HLS+KSL+++ GLSKVISKH NLHL PQI+ L EDGRV F DG  V ADTILYCTGY+Y+
Sbjct: 234 HLSSKSLDVTLGLSKVISKHENLHLRPQIESLEEDGRVLFADGSQVIADTILYCTGYTYT 293

Query: 292 FPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLS 351
           FPFLDTKGIVVV+DDRVGPLYEHTFPPSLAPSLSFVGIPRK+IGFPFFESQAKWIAQLLS
Sbjct: 294 FPFLDTKGIVVVEDDRVGPLYEHTFPPSLAPSLSFVGIPRKIIGFPFFESQAKWIAQLLS 353

Query: 352 GKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGL 411
           GKRTLPSWD MM S+K+FY SRD AGIPKHNTHDIA+FEYCDRYAD IGFPHLEEWRK L
Sbjct: 354 GKRTLPSWDDMMLSIKQFYQSRDTAGIPKHNTHDIADFEYCDRYADHIGFPHLEEWRKQL 413

Query: 412 CISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAF 453
           C+SALVN++ NLETYRDSWDDH+LLQEALQSPHFTQL  Q F
Sbjct: 414 CLSALVNANDNLETYRDSWDDHDLLQEALQSPHFTQLGVQDF 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119038|ref|XP_002317970.1| predicted protein [Populus trichocarpa] gi|222858643|gb|EEE96190.1| predicted protein [Populus trichocarpa]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/450 (80%), Positives = 403/450 (89%), Gaps = 13/450 (2%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT---------EV 62
           SK VCVIGAGPSGLVAARELRKEGH VVVLEQ +DVGGQWLY+PN +           +V
Sbjct: 8   SKKVCVIGAGPSGLVAARELRKEGHNVVVLEQRYDVGGQWLYEPNVESEDPLGKKKFLQV 67

Query: 63  HSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRF 122
           HSS+YASLRL SPREIMG+TDFPF++KKGRD RRFPGH+ELWLYLKDFC+ FGLREMIRF
Sbjct: 68  HSSIYASLRLISPREIMGFTDFPFLVKKGRDTRRFPGHRELWLYLKDFCEHFGLREMIRF 127

Query: 123 NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV-VEEVFDAVVVATGHYSYPRLPSI 181
           NT VEYV ML+  E  IG DL KW+VKS++K ++++ VEEVFDAVVVATGHYS+PRLP+I
Sbjct: 128 NTSVEYVRMLEYDE--IGKDL-KWMVKSRDKSSEEMAVEEVFDAVVVATGHYSHPRLPTI 184

Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           KGMD WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI+
Sbjct: 185 KGMDTWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIT 244

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
           EGLSKVISKH NLHLHPQI+ L+EDGRV FVDG W+ ADTIL+CTGYSY+FPFLDTKG+V
Sbjct: 245 EGLSKVISKHENLHLHPQIETLQEDGRVVFVDGSWLIADTILHCTGYSYTFPFLDTKGMV 304

Query: 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQ 361
            VDDDRVGPLYEHTFPP+LAPSLSFVGIPRK+IGFPFFE+QAKWIAQLLSGKRTLPS ++
Sbjct: 305 AVDDDRVGPLYEHTFPPALAPSLSFVGIPRKIIGFPFFEAQAKWIAQLLSGKRTLPSREE 364

Query: 362 MMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDA 421
           MM S++EFY SRD A IPKH THDI +FEYCDRY D IGFPHLEEWRK LC+SALVN+DA
Sbjct: 365 MMHSIEEFYRSRDAAAIPKHYTHDIGDFEYCDRYGDHIGFPHLEEWRKQLCLSALVNADA 424

Query: 422 NLETYRDSWDDHELLQEALQSPHFTQLNAQ 451
           NLE YRDSW+DHELLQEALQSPHFTQL A+
Sbjct: 425 NLEAYRDSWEDHELLQEALQSPHFTQLGAE 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457309|ref|XP_002281467.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Vitis vinifera] gi|147790550|emb|CAN76525.1| hypothetical protein VITISV_022813 [Vitis vinifera] gi|297733920|emb|CBI15167.3| unnamed protein product [Vitis vinifera]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/447 (78%), Positives = 396/447 (88%), Gaps = 12/447 (2%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE--------- 61
           QSK+VCVIGAGPSGLVAARELRKEGH VVV+EQNHD+GGQWLY+P  +  E         
Sbjct: 7   QSKHVCVIGAGPSGLVAARELRKEGHSVVVIEQNHDIGGQWLYEPKVEGEEALGKSTFLK 66

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSS+Y SLRL SPREIMG++DFPFV+KKGRD+RRFPGH+EL LYL+DFC+ FGLREMIR
Sbjct: 67  VHSSIYDSLRLFSPREIMGFSDFPFVVKKGRDMRRFPGHRELLLYLQDFCEWFGLREMIR 126

Query: 122 FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSI 181
           F TRVEYVGMLD  +  +G DL KWVVKS++ +++KVVEEVFDAVVVATGHYS PRLPSI
Sbjct: 127 FKTRVEYVGMLDSDQ--VGRDL-KWVVKSRDMESEKVVEEVFDAVVVATGHYSKPRLPSI 183

Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           KGMD WKR QMHSHIYR PEPFR EVVVVVGNSLSGQDISMELV+VAKE+HLSAKSL IS
Sbjct: 184 KGMDVWKRNQMHSHIYRDPEPFRKEVVVVVGNSLSGQDISMELVDVAKEIHLSAKSLEIS 243

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
           EGL+KVISKH++LHLH +I+ L EDGRV FVDG WV ADTI+YCTGYSY+FPFLDTKGIV
Sbjct: 244 EGLAKVISKHDSLHLHLEIESLHEDGRVVFVDGSWVMADTIIYCTGYSYAFPFLDTKGIV 303

Query: 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQ 361
            VDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQA WIAQLLSGKRTLPS+  
Sbjct: 304 GVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSFHD 363

Query: 362 MMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDA 421
           MMQS+K+FYHSR++AG+PKHNTHD+ANFEYCD+Y D +GFPHLEEWRK LCISA+V ++ 
Sbjct: 364 MMQSIKDFYHSREIAGVPKHNTHDLANFEYCDKYGDNVGFPHLEEWRKELCISAIVKAEV 423

Query: 422 NLETYRDSWDDHELLQEALQSPHFTQL 448
           +LE YRD+WDD ELLQ ALQSPHFTQ 
Sbjct: 424 DLEGYRDAWDDVELLQVALQSPHFTQF 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810881|ref|XP_002873324.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319161|gb|EFH49583.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/455 (75%), Positives = 393/455 (86%), Gaps = 19/455 (4%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN------------- 56
           ++SK VCVIGAGP+GLV+ARELRKEGH+VVVLEQN DVGGQWLY PN             
Sbjct: 11  SRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNDDVGGQWLYQPNVEEEDPLGRSSGS 70

Query: 57  -TDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG 115
            T + +VHSS+Y+SLRLTSPREIMGY+DFPF+ KKGRD+RRFPGHKELWLYLKDF + FG
Sbjct: 71  ITGELKVHSSIYSSLRLTSPREIMGYSDFPFLAKKGRDMRRFPGHKELWLYLKDFSETFG 130

Query: 116 LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175
           LR+MIRF  RVE+VG     E    +D+ KW+V+S+EK + KV+EE+FDAVVVATGHYS+
Sbjct: 131 LRDMIRFKVRVEFVG-----EKEEEDDVKKWIVRSREKLSGKVMEEIFDAVVVATGHYSH 185

Query: 176 PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235
           PRLPSIKGMD WKRKQ+HSH+YRVP+PF NEVVVVVGNS+SGQDISMELVEVAKEVHLSA
Sbjct: 186 PRLPSIKGMDSWKRKQIHSHVYRVPDPFSNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245

Query: 236 KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFL 295
           K+L+IS GLSKVISKH+NL +HPQI+ L +DGRV FVDG WV ADTILYCTGYSY FPFL
Sbjct: 246 KTLDISSGLSKVISKHSNLLIHPQIESLEDDGRVIFVDGSWVVADTILYCTGYSYKFPFL 305

Query: 296 DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
           ++KG + VDDDRVGPL+EHTFPP L+PSLSFVGIPRKLIGFPFFE+QAKWIAQ+LSGK  
Sbjct: 306 ESKGRIEVDDDRVGPLFEHTFPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSF 365

Query: 356 LPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISA 415
           LPS DQM+QSV EFY SRD+AG+PKHNTHDIA+F YCD+YAD +GFPHLEEWRK LC+SA
Sbjct: 366 LPSSDQMLQSVAEFYRSRDLAGVPKHNTHDIADFTYCDKYADYVGFPHLEEWRKLLCLSA 425

Query: 416 LVNSDANLETYRDSWDDHELLQEALQSPHFTQLNA 450
           L NS  NLETYRDSWDDHELLQEALQS HFT LN+
Sbjct: 426 LNNSQENLETYRDSWDDHELLQEALQSSHFTNLNS 460

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240866|ref|NP_196397.1| flavin-containing monooxygenase-like protein [Arabidopsis thaliana] gi|75170143|sp|Q9FF12.1|GSXL9_ARATH RecName: Full=Flavin-containing monooxygenase FMO GS-OX-like 9; AltName: Full=Flavin-monooxygenase glucosinolate S-oxygenase-like 9 gi|10176714|dbj|BAB09944.1| dimethylaniline monooxygenase-like protein [Arabidopsis thaliana] gi|332003823|gb|AED91206.1| flavin-containing monooxygenase-like protein [Arabidopsis thaliana]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/455 (75%), Positives = 393/455 (86%), Gaps = 19/455 (4%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-------- 61
           ++SK VCVIGAGP+GLV+ARELRKEGH+VVVLEQN DVGGQW Y PN ++ +        
Sbjct: 11  SRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVEEEDPLGRSSGS 70

Query: 62  ------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG 115
                 VHSS+Y+SLRLTSPREIMGY+DFPF+ KKGRD+RRFPGHKELWLYLKDF + FG
Sbjct: 71  INGELKVHSSIYSSLRLTSPREIMGYSDFPFLAKKGRDMRRFPGHKELWLYLKDFSEAFG 130

Query: 116 LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175
           LREMIRFN RVE+VG     E    +D+ KW+V+S+EK + KV+EE+FDAVVVATGHYS+
Sbjct: 131 LREMIRFNVRVEFVG-----EKEEEDDVKKWIVRSREKFSGKVMEEIFDAVVVATGHYSH 185

Query: 176 PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235
           PRLPSIKGMD WKRKQ+HSH+YRVP+PFRNEVVVVVGNS+SGQDISMELVEVAKEVHLSA
Sbjct: 186 PRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245

Query: 236 KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFL 295
           K+L+IS GLSKVISKH NL +HPQI+ L +DG+V FVDG WV ADTILYCTGYSY FPFL
Sbjct: 246 KTLDISSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTGYSYKFPFL 305

Query: 296 DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
           ++KG + VDDDRVGPL+EHTFPP L+PSLSFVGIPRKLIGFPFFE+QAKWIAQ+LSGK +
Sbjct: 306 ESKGRIEVDDDRVGPLFEHTFPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSS 365

Query: 356 LPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISA 415
           LPS DQM+QSV EFY SRD+AG+PKHNTHDIA+F YCD+YAD +GFPHLE+WRK LC+SA
Sbjct: 366 LPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADFTYCDKYADYVGFPHLEDWRKLLCLSA 425

Query: 416 LVNSDANLETYRDSWDDHELLQEALQSPHFTQLNA 450
           L NS  NLETYRDSWDDHELLQEALQS HFT  N+
Sbjct: 426 LNNSQENLETYRDSWDDHELLQEALQSSHFTNFNS 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457311|ref|XP_002281477.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Vitis vinifera]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/447 (75%), Positives = 391/447 (87%), Gaps = 12/447 (2%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE--------- 61
           QSK+VCVIGAGPSGLVAARELRKEGH VVV+EQNHD+GGQWLY+P  +  +         
Sbjct: 11  QSKHVCVIGAGPSGLVAARELRKEGHSVVVMEQNHDIGGQWLYEPKVEGEDALGKSTFLK 70

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSSVY SLRL SPREIMG++DFPFV+KKGRD+RRFPGH+EL LYL+DFC+ FGLREM+R
Sbjct: 71  VHSSVYDSLRLFSPREIMGFSDFPFVVKKGRDMRRFPGHRELLLYLQDFCEWFGLREMMR 130

Query: 122 FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSI 181
           F TRVEYVGMLD  +  +G DL KWVV+S++ +++KV EEVFDAVVVATGHYS PRLPSI
Sbjct: 131 FKTRVEYVGMLDSDQ--VGRDL-KWVVESRDMESEKVSEEVFDAVVVATGHYSKPRLPSI 187

Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           KGMD WKRKQMHSH+YRVPEPFR+EVVV+VGNS SG+D+S+ LVEVAKE+HLS KSL++S
Sbjct: 188 KGMDVWKRKQMHSHMYRVPEPFRHEVVVIVGNSHSGEDVSIGLVEVAKEIHLSFKSLDLS 247

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
           EGLSK ISKH+NLHLH QI+ L EDGRV FVDG WV ADTI+YCTGYSYSFPFLDTKGIV
Sbjct: 248 EGLSKFISKHHNLHLHLQIESLHEDGRVVFVDGSWVMADTIIYCTGYSYSFPFLDTKGIV 307

Query: 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQ 361
           VVDD+RVGPLYEHTFPP LAPSLSFVGIPRK+I FPFFESQA WIAQLLSGK+TLPS+  
Sbjct: 308 VVDDNRVGPLYEHTFPPLLAPSLSFVGIPRKIIAFPFFESQAIWIAQLLSGKKTLPSFHD 367

Query: 362 MMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDA 421
           MM S+++FY SR++AGIPK  TH++A+FEYCD+Y D +GFPHLEEWRKGLC+SA++ + A
Sbjct: 368 MMHSIEDFYRSREIAGIPKRYTHELADFEYCDKYGDNVGFPHLEEWRKGLCVSAVLKAMA 427

Query: 422 NLETYRDSWDDHELLQEALQSPHFTQL 448
           NLET+RDS D+ ELLQ ALQSPHFTQ 
Sbjct: 428 NLETFRDSGDEDELLQVALQSPHFTQF 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733921|emb|CBI15168.3| unnamed protein product [Vitis vinifera]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/447 (75%), Positives = 391/447 (87%), Gaps = 12/447 (2%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE--------- 61
           QSK+VCVIGAGPSGLVAARELRKEGH VVV+EQNHD+GGQWLY+P  +  +         
Sbjct: 7   QSKHVCVIGAGPSGLVAARELRKEGHSVVVMEQNHDIGGQWLYEPKVEGEDALGKSTFLK 66

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSSVY SLRL SPREIMG++DFPFV+KKGRD+RRFPGH+EL LYL+DFC+ FGLREM+R
Sbjct: 67  VHSSVYDSLRLFSPREIMGFSDFPFVVKKGRDMRRFPGHRELLLYLQDFCEWFGLREMMR 126

Query: 122 FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSI 181
           F TRVEYVGMLD  +  +G DL KWVV+S++ +++KV EEVFDAVVVATGHYS PRLPSI
Sbjct: 127 FKTRVEYVGMLDSDQ--VGRDL-KWVVESRDMESEKVSEEVFDAVVVATGHYSKPRLPSI 183

Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           KGMD WKRKQMHSH+YRVPEPFR+EVVV+VGNS SG+D+S+ LVEVAKE+HLS KSL++S
Sbjct: 184 KGMDVWKRKQMHSHMYRVPEPFRHEVVVIVGNSHSGEDVSIGLVEVAKEIHLSFKSLDLS 243

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
           EGLSK ISKH+NLHLH QI+ L EDGRV FVDG WV ADTI+YCTGYSYSFPFLDTKGIV
Sbjct: 244 EGLSKFISKHHNLHLHLQIESLHEDGRVVFVDGSWVMADTIIYCTGYSYSFPFLDTKGIV 303

Query: 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQ 361
           VVDD+RVGPLYEHTFPP LAPSLSFVGIPRK+I FPFFESQA WIAQLLSGK+TLPS+  
Sbjct: 304 VVDDNRVGPLYEHTFPPLLAPSLSFVGIPRKIIAFPFFESQAIWIAQLLSGKKTLPSFHD 363

Query: 362 MMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDA 421
           MM S+++FY SR++AGIPK  TH++A+FEYCD+Y D +GFPHLEEWRKGLC+SA++ + A
Sbjct: 364 MMHSIEDFYRSREIAGIPKRYTHELADFEYCDKYGDNVGFPHLEEWRKGLCVSAVLKAMA 423

Query: 422 NLETYRDSWDDHELLQEALQSPHFTQL 448
           NLET+RDS D+ ELLQ ALQSPHFTQ 
Sbjct: 424 NLETFRDSGDEDELLQVALQSPHFTQF 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491303|ref|XP_002281491.2| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/446 (75%), Positives = 384/446 (86%), Gaps = 12/446 (2%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE--------- 61
           QSK VCVIGAGPSGLV  RELRKEGH VV++EQNHDVGGQWLYDPN +  +         
Sbjct: 7   QSKYVCVIGAGPSGLVTTRELRKEGHCVVMMEQNHDVGGQWLYDPNVEGEDPLGRSKFLK 66

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSS+YASLRL SPREI+G++DFPFV+KKGRD RRFPGH+EL  YL+DFC+ FGLRE IR
Sbjct: 67  VHSSIYASLRLASPREIVGFSDFPFVVKKGRDTRRFPGHRELLWYLEDFCEWFGLRETIR 126

Query: 122 FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSI 181
           FNT+VEYVGMLD  E+  G   +KWVV+S++ K++KVVEE+FDAVVVATG YS+PRLPSI
Sbjct: 127 FNTKVEYVGMLDSDEVGGG---LKWVVRSRDVKSEKVVEELFDAVVVATGQYSHPRLPSI 183

Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           KGM+ WKRKQMHSHIYRVP PF NEVVVVVGN+ SGQDIS+ELV+VAKE+HLSAKSL+IS
Sbjct: 184 KGMEAWKRKQMHSHIYRVPHPFHNEVVVVVGNAASGQDISIELVDVAKEIHLSAKSLDIS 243

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
           EGLS++ISKH+NLHLH QI+ L EDGRV FVDG WV ADTI+YCTGYSYSFPFLDTKGIV
Sbjct: 244 EGLSRIISKHHNLHLHLQIESLHEDGRVVFVDGSWVVADTIIYCTGYSYSFPFLDTKGIV 303

Query: 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQ 361
            VDDDRVGPLYEHTFPPSLAPSLSFVGIPRK++GFPFFESQA WIAQLLSG++TLPS+  
Sbjct: 304 AVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKILGFPFFESQAMWIAQLLSGRKTLPSFHD 363

Query: 362 MMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSDA 421
           MM+S+++FY SRD AGIPKH THDIA+FEY D+Y D +GFPH EEWRK L +S + N+  
Sbjct: 364 MMRSIEDFYQSRDAAGIPKHQTHDIADFEYFDKYGDNVGFPHTEEWRKKLLLSTVGNAQV 423

Query: 422 NLETYRDSWDDHELLQEALQSPHFTQ 447
           NLETYRDSW DHELLQ  LQSP FTQ
Sbjct: 424 NLETYRDSWYDHELLQVVLQSPLFTQ 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439639|ref|XP_004137593.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cucumis sativus]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/477 (71%), Positives = 390/477 (81%), Gaps = 27/477 (5%)

Query: 4   DDHQQCAQSKN---VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT 60
           DDHQ    S N   VCVIGAG SGLVAARELRKEGH+V+V EQN DVGGQWLYDPN    
Sbjct: 13  DDHQLFRNSTNMKKVCVIGAGASGLVAARELRKEGHKVIVFEQNDDVGGQWLYDPNVQNE 72

Query: 61  ---------EVHSSVYASLRLTSPREIMGYTDFPFVLKK-GRDVRRFPGHKELWLYLKDF 110
                     VHSS+Y+SLR+ SPREIMG++DFPFV KK G D RRFPGH EL+LYLKDF
Sbjct: 73  HPLGRSKFLNVHSSIYSSLRIASPREIMGFSDFPFVAKKFGHDSRRFPGHYELFLYLKDF 132

Query: 111 CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD-------------K 157
           C+ F L ++IRFNTRVEYVG++D  +  I    I+WVV+S++ K+               
Sbjct: 133 CRCFDLNQLIRFNTRVEYVGVIDHNKNSIVAGDIQWVVRSRDYKSKHKKINGDDDDDDDD 192

Query: 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSG 217
           ++EEVFDAVVVA GHYS+PRLP+IKGMDKWKRKQ+HSH+YRVP+PF NEVVVVVGNS SG
Sbjct: 193 LIEEVFDAVVVANGHYSHPRLPTIKGMDKWKRKQIHSHVYRVPDPFCNEVVVVVGNSQSG 252

Query: 218 QDISMELVEVAKEVHLSAKSL-NISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCW 276
           QDIS++L+EVAKE+HLS K L N+++GLSKVI K+ NLHL PQI+ L EDGRV FVDG  
Sbjct: 253 QDISLDLIEVAKEIHLSTKFLDNVTQGLSKVIQKYQNLHLQPQIESLEEDGRVVFVDGSS 312

Query: 277 VTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF 336
           + ADTILYCTGYSY+FPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSF+GIPRKLIGF
Sbjct: 313 IVADTILYCTGYSYAFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGF 372

Query: 337 PFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYA 396
           PFFESQA WIAQLLSGKRTLPS+D MMQS+K+FYHS+D+AGIPKHNTHD+A FEYCDRY 
Sbjct: 373 PFFESQAIWIAQLLSGKRTLPSYDDMMQSIKQFYHSKDIAGIPKHNTHDLAEFEYCDRYG 432

Query: 397 DQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAF 453
           D +GFPHLEEWRK LC++A++NS  NLET+RDS DD E LQEA QSPHFTQL AQ F
Sbjct: 433 DNVGFPHLEEWRKKLCVTAIINSSNNLETFRDSMDDDEDLQEAYQSPHFTQLEAQVF 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487093|ref|XP_004157494.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cucumis sativus]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/477 (70%), Positives = 389/477 (81%), Gaps = 27/477 (5%)

Query: 4   DDHQQCAQSKN---VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT 60
           DDHQ    S N   VCVIGAG SGLVAARELRKEGH+V+V EQN DVGGQWLYDPN    
Sbjct: 13  DDHQLFRNSTNMKKVCVIGAGASGLVAARELRKEGHKVIVFEQNDDVGGQWLYDPNVQNE 72

Query: 61  ---------EVHSSVYASLRLTSPREIMGYTDFPFVLKK-GRDVRRFPGHKELWLYLKDF 110
                     VHSS+Y+SLR+ SPREIMG++DFPFV KK G D RRFPGH EL+LYLKDF
Sbjct: 73  HPLGRSKFLNVHSSIYSSLRIASPREIMGFSDFPFVAKKFGHDSRRFPGHYELFLYLKDF 132

Query: 111 CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD-------------K 157
           C+ F L ++IRFNTRVEYVG++D  +  I    I+WVV+S++ K+               
Sbjct: 133 CRCFDLNQLIRFNTRVEYVGVIDHNKNSIVAGDIQWVVRSRDYKSKHKKINGDDDDDDDD 192

Query: 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSG 217
           ++EEVFDAVVVA GHYS+PRLP+IKGMDKWKRKQ+HSH+YRVP+PF NEVVVVVGNS SG
Sbjct: 193 LIEEVFDAVVVANGHYSHPRLPTIKGMDKWKRKQIHSHVYRVPDPFCNEVVVVVGNSQSG 252

Query: 218 QDISMELVEVAKEVHLSAKSL-NISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCW 276
           QDIS++L+EVAKE+HLS K L ++++GLSKVI K+ NL L PQI+ L EDGRV FVDG  
Sbjct: 253 QDISLDLIEVAKEIHLSTKFLGSVTQGLSKVIQKYQNLRLQPQIESLEEDGRVVFVDGSS 312

Query: 277 VTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF 336
           + ADTILYCTGYSY+FPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSF+GIPRKLIGF
Sbjct: 313 IVADTILYCTGYSYAFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGF 372

Query: 337 PFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYA 396
           PFFESQA WIAQLLSGKRTLPS+D MMQS+K+FYHS+D+AGIPKHNTHD+A FEYCDRY 
Sbjct: 373 PFFESQAIWIAQLLSGKRTLPSYDDMMQSIKQFYHSKDIAGIPKHNTHDLAEFEYCDRYG 432

Query: 397 DQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLNAQAF 453
           D +GFPHLEEWRK LC++A++NS  NLET+RDS DD E LQEA QSPHFTQL AQ F
Sbjct: 433 DNVGFPHLEEWRKKLCVTAIINSSNNLETFRDSMDDDEDLQEAYQSPHFTQLEAQVF 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
TAIR|locus:2177813	460	AT5G07800 "AT5G07800" [Arabido	0.960	0.947	0.714	1.4e-176
TAIR|locus:2163193	461	AT5G61290 "AT5G61290" [Arabido	0.964	0.950	0.697	7.4e-169
TAIR|locus:2203866	450	AT1G62620 "AT1G62620" [Arabido	0.931	0.94	0.493	3.1e-106
TAIR|locus:2031336	450	AT1G63370 "AT1G63370" [Arabido	0.931	0.94	0.490	1.4e-105
TAIR|locus:2201991	465	FMO "AT1G12200" [Arabidopsis t	0.588	0.574	0.503	3.6e-103
TAIR|locus:2203921	452	AT1G62600 "AT1G62600" [Arabido	0.592	0.595	0.487	7.5e-101
TAIR|locus:2203901	461	FMO GS-OX4 "AT1G62570" [Arabid	0.607	0.598	0.469	9.6e-101
TAIR|locus:2203891	462	FMO GS-OX3 "AT1G62560" [Arabid	0.590	0.580	0.479	8.6e-100
TAIR|locus:2203911	464	NOGC1 "AT1G62580" [Arabidopsis	0.590	0.577	0.476	1.2e-98
TAIR|locus:2201981	470	AT1G12130 "AT1G12130" [Arabido	0.462	0.446	0.518	4.9e-98

TAIR|locus:2177813 AT5G07800 "AT5G07800" [Arabidopsis thaliana (taxid:3702)]

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 325/455 (71%), Positives = 370/455 (81%)

Query:    10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-------- 61
             ++SK VCVIGAGP+GLV+ARELRKEGH+VVVLEQN DVGGQW Y PN ++ +        
Sbjct:    11 SRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVEEEDPLGRSSGS 70

Query:    62 ------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG 115
                   VHSS+Y+SLRLTSPREIMGY+DFPF+ KKGRD+RRFPGHKELWLYLKDF + FG
Sbjct:    71 INGELKVHSSIYSSLRLTSPREIMGYSDFPFLAKKGRDMRRFPGHKELWLYLKDFSEAFG 130

Query:   116 LREMIRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSY 175
             LREMIRFN RVE+VG     E    +D+                          TGHYS+
Sbjct:   131 LREMIRFNVRVEFVG-----EKEEEDDVKKWIVRSREKFSGKVMEEIFDAVVVATGHYSH 185

Query:   176 PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235
             PRLPSIKGMD WKRKQ+HSH+YRVP+PFRNEVVVVVGNS+SGQDISMELVEVAKEVHLSA
Sbjct:   186 PRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAKEVHLSA 245

Query:   236 KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFL 295
             K+L+IS GLSKVISKH NL +HPQI+ L +DG+V FVDG WV ADTILYCTGYSY FPFL
Sbjct:   246 KTLDISSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTGYSYKFPFL 305

Query:   296 DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
             ++KG + VDDDRVGPL+EHTFPP L+PSLSFVGIPRKLIGFPFFE+QAKWIAQ+LSGK +
Sbjct:   306 ESKGRIEVDDDRVGPLFEHTFPPCLSPSLSFVGIPRKLIGFPFFEAQAKWIAQVLSGKSS 365

Query:   356 LPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISA 415
             LPS DQM+QSV EFY SRD+AG+PKHNTHDIA+F YCD+YAD +GFPHLE+WRK LC+SA
Sbjct:   366 LPSPDQMLQSVDEFYRSRDLAGVPKHNTHDIADFTYCDKYADYVGFPHLEDWRKLLCLSA 425

Query:   416 LVNSDANLETYRDSWDDHELLQEALQSPHFTQLNA 450
             L NS  NLETYRDSWDDHELLQEALQS HFT  N+
Sbjct:   426 LNNSQENLETYRDSWDDHELLQEALQSSHFTNFNS 460

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2163193 AT5G61290 "AT5G61290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 313/449 (69%), Positives = 361/449 (80%)

Query:    10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-------- 61
             +QSK VCVIGAGPSGLV+AREL+KEGH+VVV+EQNHDVGGQWLY PN D+ +        
Sbjct:    11 SQSKTVCVIGAGPSGLVSARELKKEGHKVVVMEQNHDVGGQWLYQPNVDEEDTLGKTKTL 70

Query:    62 -VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMI 120
              VHSSVY+SLRL SPRE+MG++DFPF+ K+GRD RRFPGH+EL LYLKDFCQ FGLREMI
Sbjct:    71 KVHSSVYSSLRLASPREVMGFSDFPFIAKEGRDSRRFPGHEELLLYLKDFCQVFGLREMI 130

Query:   121 RFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPS 180
             RFN RVE+VGM++  E    +D +                         +GHYSYPRLP+
Sbjct:   131 RFNVRVEFVGMVN--EDDDDDDDVKKWMVKSVKKSGEVMEEVFDAVVVASGHYSYPRLPT 188

Query:   181 IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240
             IKGMD WKRKQ+HSHIYRVPEPF +EVVVVVG S+SGQDIS+ELVEVAKEVHLS KSL+I
Sbjct:   189 IKGMDLWKRKQLHSHIYRVPEPFCDEVVVVVGCSMSGQDISIELVEVAKEVHLSTKSLDI 248

Query:   241 SEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGI 300
               GLSKVI KH NLHLHPQI+ L EDGRV F DG  + ADTILYCTGY Y FPFL++KG 
Sbjct:   249 PPGLSKVIEKHQNLHLHPQIESLEEDGRVIFEDGSCIVADTILYCTGYEYKFPFLESKGR 308

Query:   301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWD 360
             V +DD+RVGPL+EHTF PSL+P LSFVGIPRKLIGFPFFESQAKWIA+LLSGK +LPS D
Sbjct:   309 VEIDDNRVGPLFEHTFSPSLSPFLSFVGIPRKLIGFPFFESQAKWIAKLLSGKTSLPSSD 368

Query:   361 QMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKGLCISALVNSD 420
             QMMQS+ +FY +R+  GIPK NTHDIA+F Y D+YAD IGFPHLEEWRK LC+SA++NS 
Sbjct:   369 QMMQSISDFYLAREADGIPKRNTHDIADFNYSDKYADYIGFPHLEEWRKVLCLSAILNSI 428

Query:   421 ANLETYRDSWDDHELLQEALQSPHFTQLN 449
              NLETYRDSWDD +LLQE LQ P+FTQL+
Sbjct:   429 ENLETYRDSWDDDDLLQETLQDPYFTQLS 457

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2203866 AT1G62620 "AT1G62620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 219/444 (49%), Positives = 280/444 (63%)

Query:    11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP-NTDQTE-- 61
             +S +V VIGAGP+GLVAARELR+EGH VVV E+   VGG W+Y      DP + D T   
Sbjct:     9 RSHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSV 68

Query:    62 VHSSVYASLRLTSPREIMGYTDFPFVLKKG--RDVRRFPGHKELWLYLKDFCQRFGLREM 119
             VHSSVY SLR+   RE  GY DFPFV++ G  RD RRFP H E+  YLKDF + FG+ EM
Sbjct:    69 VHSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDPRRFPSHGEVLAYLKDFAKEFGIEEM 128

Query:   120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
             +RF T V  V +    E  IG   I                          GHY  PRL 
Sbjct:   129 VRFETEV--VKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVC----NGHYVEPRLA 182

Query:   180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239
              I G+  W  K+MHSH YR+PEPFR++VVV++GNS S +DIS ++  VAKEVH++ +S N
Sbjct:   183 QIPGISSWPGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAKEVHVACRS-N 241

Query:   240 ISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
              ++   K    +NNL  H  I+ + EDG V + +G  ++ D I++CTGY Y FPFLDT G
Sbjct:   242 PADTFIKQTG-YNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNG 300

Query:   300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSW 359
             IV VDD+RVGPLY+  FPP+ AP LSF+GIP +++ FP FE Q+KWIA +LSG+  LPS 
Sbjct:   301 IVTVDDNRVGPLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSK 360

Query:   360 DQMMQSVKEFYHSRDVAGIPKHNTHDIAN--FEYCDRYADQIGFPHLEEWRKGLCISALV 417
             + MM  +K FY + +V GIPK  TH + N  FEY +  A Q G    EEWRK +C++  V
Sbjct:   361 EDMMIEIKTFYSTLEVQGIPKRYTHRMGNTQFEYYNWLASQCGCSETEEWRKEMCLANGV 420

Query:   418 NSDANLETYRDSWDDHELLQEALQ 441
               +A+ ETYRD WDDH L+ EA Q
Sbjct:   421 RKEAHPETYRDEWDDHHLVSEAYQ 444

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2031336 AT1G63370 "AT1G63370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 218/444 (49%), Positives = 279/444 (62%)

Query:    11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY------DP-NTDQTE-- 61
             +S +V VIGAGP+GLVAARELR+EGH VVV E+   VGG W+Y      DP + D T   
Sbjct:     9 RSHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSV 68

Query:    62 VHSSVYASLRLTSPREIMGYTDFPFVLKKG--RDVRRFPGHKELWLYLKDFCQRFGLREM 119
             VHSSVY SLR+   RE  GY DFPFV++ G  RD RRFP H E+  YLKDF + FG+ EM
Sbjct:    69 VHSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAKEFGIEEM 128

Query:   120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
             +RF T V  V +    E  IG   I                          GHY  PRL 
Sbjct:   129 VRFETEV--VKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVC----NGHYVEPRLA 182

Query:   180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239
              I G+  W  K+MHSH YR+PEPFR++V V++GNS S +DIS ++  VAKEVH++ +S N
Sbjct:   183 QIPGISSWPGKEMHSHNYRIPEPFRDKVAVLIGNSSSAEDISRDIARVAKEVHVACRS-N 241

Query:   240 ISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
              ++   K    +NNL  H  I+ + EDG V + +G  ++ D I++CTGY Y FPFLDT G
Sbjct:   242 PADTFIKQTG-YNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNG 300

Query:   300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSW 359
             IV VDD+RVGPLY+  FPP+ AP LSF+GIP +++ FP FE Q+KWIA +LSG+  LPS 
Sbjct:   301 IVTVDDNRVGPLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSK 360

Query:   360 DQMMQSVKEFYHSRDVAGIPKHNTHDIAN--FEYCDRYADQIGFPHLEEWRKGLCISALV 417
             + MM  +K FY + +V GIPK  TH + N  FEY +  A Q G    EEWRK +C++  V
Sbjct:   361 EDMMIEIKTFYSTLEVQGIPKRYTHRMGNTQFEYDNWLASQCGCSETEEWRKEMCLANGV 420

Query:   418 NSDANLETYRDSWDDHELLQEALQ 441
               +A+ ETYRD WDDH L+ EA Q
Sbjct:   421 RKEAHPETYRDEWDDHHLVSEAYQ 444

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2201991 FMO "AT1G12200" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
 Identities = 137/272 (50%), Positives = 186/272 (68%)

Query:   171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             GHY+ PR   I G+D W  KQ+HSH YRVP+ F+++VV+V+G+S SG DI  ++ +VAKE
Sbjct:   176 GHYTEPRHALITGIDSWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKE 235

Query:   231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290
             VH+S++S   S    + ++ + NL LH  I   REDG V F +G  + ADTI++CTGY Y
Sbjct:   236 VHVSSRST--SPDTYEKLTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHCTGYKY 293

Query:   291 SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLL 350
              FPFLDTKG V VDD+RVGPLY+H FPP+LAPSLSF+G+P ++  FP FE Q+KW+A +L
Sbjct:   294 YFPFLDTKGEVTVDDNRVGPLYKHVFPPALAPSLSFIGLPWQITPFPMFELQSKWVAAVL 353

Query:   351 SGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTH---DIANFEYCDRYADQIGFPHLEEW 407
             SG+ +LPS D+MM+  K FY   + +GIPK  TH   D + FEY +  ADQ  +P +E+W
Sbjct:   354 SGRVSLPSQDEMMEDTKAFYDKLEASGIPKRYTHLMPDDSQFEYDNWLADQCEYPRIEKW 413

Query:   408 RKGLCISALVNSDANLETYRDSWDDHELLQEA 439
             R+ +         A   TYRD+WDD  L+ EA
Sbjct:   414 REQMFYIGFKRIYAQSSTYRDNWDDDHLIVEA 445

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2203921 AT1G62600 "AT1G62600" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 133/273 (48%), Positives = 175/273 (64%)

Query:   171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             GHY  PR   I G+  W  K+MHSH YR+PEPFR++VVV++GNS S  DIS ++  VAKE
Sbjct:   176 GHYIEPRHAEIPGISSWPGKEMHSHNYRIPEPFRDQVVVLIGNSASADDISRDIARVAKE 235

Query:   231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290
             VH++ +S      + +    ++NL +H  I+ + EDG V F +G  ++ D I++CTGY Y
Sbjct:   236 VHVACRSNAADTYIER--PGYSNLWMHSMIESVHEDGSVVFQNGKTISVDVIMHCTGYKY 293

Query:   291 SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLL 350
              FPFL+T G V VDD+RVGPLY+  F P+ AP LSFVGIP K++ FP FE Q+KWIA +L
Sbjct:   294 HFPFLETNGNVTVDDNRVGPLYKDVFSPAFAPWLSFVGIPWKVVPFPMFELQSKWIAGVL 353

Query:   351 SGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHD--IANFEYCDRYADQIGFPHLEEWR 408
             SG+  LPS + MM  +K  Y + D  GI K  TH   I+ FEY    A Q G    EEWR
Sbjct:   354 SGRIPLPSKEDMMMEIKTLYSTLDAQGIAKRYTHQMGISQFEYNSWLASQCGCSETEEWR 413

Query:   409 KGLCISALVNSDANLETYRDSWDDHELLQEALQ 441
             K +  +  V   A+ ETYRD WDDH L+ +A Q
Sbjct:   414 KEMYFATGVKKRAHPETYRDEWDDHHLVSQAYQ 446

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2203901 FMO GS-OX4 "AT1G62570" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
 Identities = 132/281 (46%), Positives = 183/281 (65%)

Query:   171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             GH++ P +  I G++ W  +Q HSH YRVP+PF++EVVVV+GN  SG DIS ++ +VAKE
Sbjct:   170 GHFAEPNIAQIPGIESWPGRQTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKE 229

Query:   231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290
             VH+++++   S    K    +NNL +H +ID   EDG + F +G  V ADTI++CTGY Y
Sbjct:   230 VHIASRASK-SNTFEKRPVPNNNLWMHSEIDTAHEDGTIVFKNGKVVHADTIVHCTGYKY 288

Query:   291 SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLL 350
              FPFL+T   + VDD+RV PLY+H FPP+LAP LSF+G+P   + F  FE Q+KW+A +L
Sbjct:   289 YFPFLETNNYMRVDDNRVEPLYKHIFPPALAPGLSFIGLPAMGLQFYMFEVQSKWVAAVL 348

Query:   351 SGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDI--ANFEYCDRYADQIGFPHLEEWR 408
             SG+ TLPS D+MM  +K  Y +++  GIPK  TH +  +  EY D  AD  GFPH+E WR
Sbjct:   349 SGRVTLPSVDEMMDDLKLSYETQEALGIPKRYTHKLGKSQCEYLDWIADLCGFPHVEHWR 408

Query:   409 KGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQLN 449
                            ET+RD WDD +L++EA +   F +LN
Sbjct:   409 DQEVTRGYQRLGNQPETFRDEWDDDDLMEEAYED--FARLN 447

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
 Identities = 130/271 (47%), Positives = 177/271 (65%)

Query:   171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             GHY+ P +  I G+  W  KQ+HSH YRVP+PF NEVVVV+GN  SG DIS ++ +VAKE
Sbjct:   171 GHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAKE 230

Query:   231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290
             VH+++++        K+    NNL +H +ID   EDG + F +G  + AD+I+YCTGY Y
Sbjct:   231 VHIASRARE-PHTYEKISVPQNNLWMHSEIDTTHEDGSIVFKNGKVIFADSIVYCTGYKY 289

Query:   291 SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLL 350
             +FPFL+T G + +D+ RV PLY+H FPP+LAP L+FVG+P   I F  FE Q+KW+A +L
Sbjct:   290 NFPFLETNGYLRIDEKRVEPLYKHVFPPALAPGLAFVGLPAMGIVFVMFEIQSKWVAAVL 349

Query:   351 SGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANF--EYCDRYADQIGFPHLEEWR 408
             SG+ TLPS D+MM+ +  +Y S D  GIPK +TH I     EY +  A + G   +E WR
Sbjct:   350 SGRVTLPSTDKMMEDINAWYASLDALGIPKRHTHTIGRIQSEYLNWVAKESGCELVERWR 409

Query:   409 KGLCISALVNSDANLETYRDSWDDHELLQEA 439
                     +   A+ ETYRD WDD EL++EA
Sbjct:   410 GQEVDGGYLRLVAHPETYRDEWDDDELIEEA 440

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
 Identities = 131/275 (47%), Positives = 184/275 (66%)

Query:   171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             GHY+ PR   I G+D W  KQ+HSH YRVPE  +++VVVV+G+S+SG DIS ++  V KE
Sbjct:   173 GHYTEPRHALIPGIDTWPGKQIHSHNYRVPEQVKDQVVVVIGSSVSGVDISRDIANVTKE 232

Query:   231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290
             VH+S++S    E   K +  ++NL LH  I+ +REDG V F +G  V ADTI++CTGY Y
Sbjct:   233 VHISSRSTK-PETYEK-LPGYDNLWLHSNIETVREDGSVVFKNGKTVYADTIMHCTGYKY 290

Query:   291 SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLL 350
              FPFLDTKG V V+D+RVGPLY+H FPP+L+P LSF+G+P ++I FP FE Q+KW+A +L
Sbjct:   291 YFPFLDTKGEVTVEDNRVGPLYKHVFPPALSPGLSFIGLPWQVIPFPMFELQSKWVAAVL 350

Query:   351 SGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIAN----FEYCDRYADQIGFPHLEE 406
             +G+ +LPS ++M +  K FY   + + IPK  TH +A     F Y +  ADQ  +P +E+
Sbjct:   351 AGRVSLPSQEEM-EDTKMFYLKLEASCIPKRYTHLMAELDSQFVYNNWLADQCDYPRIEK 409

Query:   407 WRKGLCISALVNSDANLETYRDSWDDHELLQEALQ 441
             WR+ +         +   TY+D WDD  L+ EA +
Sbjct:   410 WREQMFYKVFKRIQSQASTYKDDWDDDHLIAEAYE 444

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0019825 "oxygen binding" evidence=IDA

GO:0070026 "nitric oxide binding" evidence=IDA

TAIR|locus:2201981 AT1G12130 "AT1G12130" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 4.9e-98, Sum P(3) = 4.9e-98
 Identities = 111/214 (51%), Positives = 149/214 (69%)

Query:   171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             GH++ PRL  I G++ W  KQ+HSH YRV +PF+ +VV+V+G   SG DIS ++  +AKE
Sbjct:   173 GHFTEPRLAHIPGIESWPGKQIHSHNYRVSDPFKGQVVIVIGYQSSGSDISRDIAILAKE 232

Query:   231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290
             VH++AKS    +  +K  S ++NLH HP ID + EDG V F DG  + AD I++CTGY Y
Sbjct:   233 VHIAAKS----DAYAKESSIYSNLHFHPTIDRVYEDGSVVFQDGKLIFADAIVHCTGYKY 288

Query:   291 SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLL 350
              FPFL+TKG V V+D+RVGPLY+H FPP+LAP LSF+G+P   + F  FE Q++W+A +L
Sbjct:   289 CFPFLETKGYVNVEDNRVGPLYKHVFPPALAPGLSFIGLPSMALQFFMFEIQSRWVASVL 348

Query:   351 SGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTH 384
             SG+  LPS +QMM+ V  FY      GIPK  TH
Sbjct:   349 SGRVKLPSEEQMMEDVIAFYAKLKSLGIPKRFTH 382

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FF12	GSXL9_ARATH	1, ., 8, ., -, ., -	0.7516	0.9603	0.9478	yes	no
Q9FLK4	GSXL8_ARATH	1, ., 8, ., -, ., -	0.7349	0.9647	0.9501	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	454
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	1e-161
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	8e-45
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	1e-32
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	1e-19
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	5e-14
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	2e-12
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	3e-11
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	5e-11
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	2e-09
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	4e-09
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	5e-09
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	6e-09
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	3e-08
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	7e-08
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	1e-07
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-07
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	3e-07
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	5e-07
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-06
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	1e-06
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	2e-06
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	2e-06
PLN02976	1713	PLN02976, PLN02976, amine oxidase	2e-06
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	2e-06
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-06
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	3e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	4e-06
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	8e-06
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	9e-06
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	9e-06
PRK02705	459	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-05
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-05
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	1e-05
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	2e-05
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	2e-05
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	2e-05
pfam01946	229	pfam01946, Thi4, Thi4 family	2e-05
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-05
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	3e-05
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	4e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	4e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	4e-05
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	5e-05
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	5e-05
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	5e-05
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	7e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	7e-05
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	7e-05
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	8e-05
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	1e-04
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	1e-04
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	2e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	2e-04
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	2e-04
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	2e-04
COG0771	448	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta	3e-04
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-04
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	4e-04
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	4e-04
pfam02254	116	pfam02254, TrkA_N, TrkA-N domain	5e-04
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	5e-04
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	5e-04
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	7e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	7e-04
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	8e-04
COG3573	552	COG3573, COG3573, Predicted oxidoreductase [Genera	9e-04
PLN03000	881	PLN03000, PLN03000, amine oxidase	0.001
COG0569	225	COG0569, TrkA, K+ transport systems, NAD-binding c	0.001
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	0.001
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	0.001
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	0.001
TIGR03996	633	TIGR03996, mycofact_OYE_1, mycofactocin system Fad	0.001
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	0.001
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	0.002
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	0.002
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	0.002
PRK04308	445	PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	0.002
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.004
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	0.004
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.004
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	0.004
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	0.004

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score =  463 bits (1192), Expect = e-161
 Identities = 210/442 (47%), Positives = 284/442 (64%), Gaps = 26/442 (5%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD---------QTEV 62
           S++V VIGAG +GLVAARELR+EGH VVV E+   VGG W+Y P ++         ++ V
Sbjct: 10  SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIV 69

Query: 63  HSSVYASLRLTSPREIMGYTDFPFVLK---KGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
           HSSVY SLR   PRE MGY DFPFV +   + RD RR+P H+E+  YL+DF + F + EM
Sbjct: 70  HSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEM 129

Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLP 179
           +RF T V  V  +D           KW V+SK        +E+FDAVVV  GHY+ P + 
Sbjct: 130 VRFETEVVRVEPVDG----------KWRVQSK-NSGGFSKDEIFDAVVVCNGHYTEPNVA 178

Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239
            I G+  W  KQ+HSH YRVP+PF+NEVVVV+GN  SG DIS ++ +VAKEVH+++++ +
Sbjct: 179 HIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA-S 237

Query: 240 ISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
            S+   K+    NNL +H +ID   EDG + F +G  V ADTI++CTGY Y FPFL+T G
Sbjct: 238 ESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNG 297

Query: 300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSW 359
            + +D++RV PLY+H FPP+LAP LSF+G+P   I F  FE Q+KW+A +LSG+ TLPS 
Sbjct: 298 YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSE 357

Query: 360 DQMMQSVKEFYHSRDVAGIPKHNTHDIANF--EYCDRYADQIGFPHLEEWRKGLCISALV 417
           D+MM+ +  +Y S +  GIPK  TH +     EY +  A++ G P +E WR         
Sbjct: 358 DKMMEDINAWYASLEALGIPKRYTHKLGKIQSEYLNWIAEECGCPLVEHWRYQEVDRGYQ 417

Query: 418 NSDANLETYRDSWDDHELLQEA 439
              +  ETYRD WDD +L++EA
Sbjct: 418 RLVSQPETYRDEWDDDDLMEEA 439

Length = 461

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score =  161 bits (410), Expect = 8e-45
 Identities = 82/224 (36%), Positives = 113/224 (50%), Gaps = 28/224 (12%)

Query: 15  VCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT 73
           V +IGAG SGL AA  L++ G    V+ E+  DVGG W Y+            Y  LRL 
Sbjct: 11  VAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-----------YPGLRLD 59

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
           SP+ ++G+   PF     R    F    E+  Y+KD+ +++GLR  IRFNTRVE      
Sbjct: 60  SPKWLLGFPFLPF-----RWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVE------ 108

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMH 193
             +         W V + +       E   D VVVATGH S P +P   G+D++K + +H
Sbjct: 109 VADWDEDTKR--WTVTTSDGGTG---ELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163

Query: 194 SHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237
           S  +  PE  R + V+V+G   S  DI+ EL EV   V LS +S
Sbjct: 164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRS 207

Length = 443

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score =  129 bits (326), Expect = 1e-32
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
           +K V VIGAG SGL + +   +EG      E++ D+GG W +  + +  E  +S+Y S+ 
Sbjct: 1   AKKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVE--EGRASIYKSVV 58

Query: 72  LTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
             S +E+  ++DFPF      D   F  + +   YL+ F + F L + I+F T V  V  
Sbjct: 59  TNSSKEMSCFSDFPF----PEDYPNFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVT- 113

Query: 132 LDCGELIIGNDLIKW-VVKSKEKKADKVVEEVFDAVVVATGHYSYPRLP--SIKGMDKWK 188
               +        +W VV   E K +     VFDAV+V TGH++ P LP  S  G++K+K
Sbjct: 114 -KRPDFSTSG---QWEVVTEHEGKQES---AVFDAVMVCTGHHTNPHLPLESFPGINKFK 166

Query: 189 RKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237
            +  HS  Y+ PE F+ + V+V+G   SG DI++EL   A +V LS ++
Sbjct: 167 GQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRT 215

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 30/221 (13%)

Query: 16  CVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPNTDQTEVHS-SVYASLRLT 73
            V+GAG +G+  A  L   G   V+++++    GG W       +  +H  S +      
Sbjct: 1   LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHWRKWYPFVR--LHQPSFFYGDFGM 58

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
                +     P    K           E+  YL+D  +R+GL   IR +TRV  V    
Sbjct: 59  PDLNALSIDTSP----KWDGKAELASGAEIAAYLEDLARRYGLP--IRLSTRVTAV---- 108

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVF-DAVVVATGHYSYPRLPSIKGMDKWKRKQM 192
                      ++VV+  +       E V  D VV ATG +S P+ P   G D    + +
Sbjct: 109 ----ERDGG--RFVVRLTDG------ETVRADYVVDATGAFSVPKPPGFPGADA---EGV 153

Query: 193 HSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHL 233
           H          + + V V+G   +  D ++ L+++ K+V  
Sbjct: 154 HLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTW 194

Length = 202

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 85/319 (26%), Positives = 130/319 (40%), Gaps = 62/319 (19%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V +IGAGP GL  A E +K G   +++E+ + V    +Y   T+ T   S        TS
Sbjct: 2   VIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLV--NSIYRYPTNMT-FFS--------TS 50

Query: 75  PR-EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
            R EI      PF+ +        P   E   Y +   +RF L   IR    V  V   D
Sbjct: 51  ERLEI---GGIPFISE-----NPKPTRNEALEYYRRVAERFKLN--IRLYEEVLKVKKTD 100

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDA--VVVATGHYSYPRLPSIKGMDKWKRKQ 191
            G  +                     +  + A  V+VATG+Y  P L ++ G D  K   
Sbjct: 101 GGFEVTTE------------------KGTYQAKNVIVATGYYDIPNLLNVPGEDLPKV-- 140

Query: 192 MHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL------- 244
             SH Y+   P+  + VVVVG S S  D ++EL     EV +  +   +S  +       
Sbjct: 141 --SHYYKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEVTMVHRGDEVSSSVKYWVRPD 198

Query: 245 --SKVISKHNNLHLHPQIDCLREDGRVTF--VDGCWVT--ADTILYCTGYSYSFPFLDTK 298
             +++       + + ++  + ED  VT    DG   T   D +   TGY   F FL++ 
Sbjct: 199 IENRIKEGSIKAYFNSRVKEITED-SVTLETPDGEVHTIPNDFVFALTGYRPDFEFLESL 257

Query: 299 GIVVVDDDRVGPLY-EHTF 316
           G+ + +D  + P+Y   T 
Sbjct: 258 GVELDEDTGI-PVYNPETM 275

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 33/92 (35%), Positives = 60/92 (65%), Gaps = 6/92 (6%)

Query: 280 DTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLA-PSLSFVGIPRKLIG--F 336
           D +++ TGY++SFPFL+ + +V V+ +++  LY++ FPP+L  P+L+ +G+  + +G   
Sbjct: 322 DVVIFATGYTFSFPFLE-ESLVKVETNKIS-LYKYVFPPNLEKPTLAIIGLI-QPLGSII 378

Query: 337 PFFESQAKWIAQLLSGKRTLPSWDQMMQSVKE 368
           P  E QA+W  ++  G   LPS  +MM+ + E
Sbjct: 379 PTVELQARWAVRVFKGLCKLPSSSKMMEEITE 410

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
          ++GAG SGLVAA  L K G  V+VLE+   +GG  
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNA 35

Length = 66

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 63/315 (20%), Positives = 111/315 (35%), Gaps = 75/315 (23%)

Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT 73
           +V +IG GP+GL AA  L + G +V ++E     GG                        
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIE---REGG------------------------ 33

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
                  Y       K   +V             ++  + FG+   +   T V       
Sbjct: 34  -----TCYNRGCLPKKLLLEVAEGLELAIGLALPEEVYKEFGVE--VLLGTEVV------ 80

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMH 193
             ++  G   +        +      E  +D +++ATG  + PR+P I G++    + + 
Sbjct: 81  --DIDRGEKTVVLKDVETGR------EITYDKLIIATG--ARPRIPGIPGVEVATLRGVI 130

Query: 194 S--HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHL------------SAKSLN 239
               I  + E  +   VVVVG    G +++  L ++ KEV +               S  
Sbjct: 131 DSDEILELLELPKR--VVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAA 188

Query: 240 ISEGLSKVISKHNNLHLHPQIDCLREDGR--VTFVDGCWVTADTILYCTGYSYSFPFL-- 295
           + E L K++     L +   +  + +     V   DG  + AD +L   G   +   L  
Sbjct: 189 LLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQ 248

Query: 296 -----DTKGIVVVDD 305
                D +G +VVD+
Sbjct: 249 AGVELDERGYIVVDE 263

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 32/220 (14%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V +IGAG +GL  +  L++ G   VVLE+ H V   W               + S  L +
Sbjct: 3   VVIIGAGQAGLSVSYYLKQAGIDHVVLEK-HTVAHSW-----------RDERWDSFCLVT 50

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC 134
           P         P+    G D   F    E+  YL  + + F     +R  T V  +     
Sbjct: 51  PNWQCRLPGHPY---DGTDPDGFMVKDEIVAYLDGYARSFN--PPVREGTEVTSLRKHGA 105

Query: 135 GELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHS 194
           G   +               +        D VV+ATG Y  P +P +         Q+HS
Sbjct: 106 GGFRV---------------STSAGAFTADQVVIATGGYHVPVIPPLAERLPADVLQLHS 150

Query: 195 HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234
             YR P+   +  V+VVG+  SG  I+ +L    ++VHL+
Sbjct: 151 SEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVHLA 190

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          V ++GAGPSGL AA  L K G +V V E+    GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 57.9 bits (141), Expect = 5e-09
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           K V VIGAGP+GL AA  L ++G+ V + E     GG
Sbjct: 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           + ++G G +GL AA  L K GH V V E +  +GG
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
             +V VIGAG +GL AA  L + G +V VLE+N  VGG
Sbjct: 2  PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40

Length = 487

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
           K+V V+GAGP GL AA    K G +V ++E    +GGQ
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174

Length = 415

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            K+V +IGAGP+GL AA EL K G+ V VLE +  VGG
Sbjct: 3  NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 46/213 (21%), Positives = 71/213 (33%), Gaps = 44/213 (20%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG-----GQWLYDPNTDQTEVHSSVYAS 69
           V ++GAGP+G  AAR L K G  V+VLE+  + G     G  L                 
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSP----------RALEE 55

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELW-LYLKDFCQRFGLREM-------IR 121
           L      EI        +   G  V       E + +    F +   L E        + 
Sbjct: 56  LIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKW--LAERAEEAGAELY 113

Query: 122 FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSI 181
             TRV          +I  +D    VV    +  D  V      V+ A G  S   L   
Sbjct: 114 PGTRVT--------GVIREDD--GVVV--GVRAGDDEVR--AKVVIDADGVNS--ALARK 157

Query: 182 KGMDKWKRKQMHSHIYR--VPEPFRNEVVVVVG 212
            G+ K ++ + ++   +  +  P   +V   + 
Sbjct: 158 LGL-KDRKPEDYAIGVKEVIEVPDDGDVEEFLY 189

Length = 396

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 3  SDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           +D     +S +V ++GAGPSGL AA  L K G +V + E+    GG
Sbjct: 22 FEDLLDYLES-DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            K V VIGAGP+GL AA  L + GH V V E+  + GG
Sbjct: 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576

Length = 1019

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           K V V+G+GP+GL AA +L + GH+V V E+   +GG
Sbjct: 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53
              K V +IGAGP+GL AA  L ++GH V + + N   GG   Y
Sbjct: 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY 234

Length = 652

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
            K V V+G GP+GL AA    + GHRV + E+   +GGQ
Sbjct: 379 RKRVLVVGGGPAGLEAAATAARRGHRVTLFEREDRLGGQ 417

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53
           K V VIG GP+GL AA  LR+ GH V + E    +GG   Y
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY 178

Length = 564

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1   MVSDDHQQC--AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
           M  +    C     K + V+GAGP+GL AAR L+++G  V VLE    +GG+
Sbjct: 680 MGGNHCVLCDSVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731

Length = 1713

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          + +V ++GAG +GL AA EL+K G++V +LE    VGG
Sbjct: 7  TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44

Length = 450

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
            +V ++GAGP+GL  A  L + G  V +LE+   
Sbjct: 2  MLDVAIVGAGPAGLALALALARAGLDVTLLERAPR 36

Length = 387

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 41/209 (19%), Positives = 52/209 (24%), Gaps = 52/209 (24%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ------WLYDPNTDQ---TEVHSS 65
           V +IG G  GL AA  L + G  V VLE     GG        +  P        EV   
Sbjct: 7   VVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPL 66

Query: 66  VYASLRLT-----SPREIMGY-----------TDFPFVLKKGRDVRRFPGHKELWLYL-- 107
              SL L            G                 + +  R         E    L  
Sbjct: 67  ADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDA 126

Query: 108 ---KDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-------------VKSK 151
               +     G    +         G LD   L     L                 V S 
Sbjct: 127 AEAAELEPALGPDF-VCGGLFDPTGGHLDPRLLTRA--LAAAAEELGVVIIEGGTPVTSL 183

Query: 152 EKKADKVV------EEVFDAVVVATGHYS 174
           E+    V           D VV+A G ++
Sbjct: 184 ERDGRVVGVETDGGTIEADKVVLAAGAWA 212

Length = 387

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          V VIG G  GL  A EL + G  V +LE+  D+  
Sbjct: 2  VVVIGGGIVGLSTAYELARRGLSVTLLER-GDLAS 35

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN--HDVGGQ 50
          +V V+GAG +GLVAA EL   G RV++L+Q    ++GGQ
Sbjct: 6  DVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44

Length = 549

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53
           K V VIG+GP+GL  A +L K G+ V + E  H+ GG  +Y
Sbjct: 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY 181

Length = 464

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          V VIGAGP+G VAA    + G +V ++E+   +GG
Sbjct: 7  VVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41

Length = 454

>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
            VIG G SG+ AAR L+ +G  VVV ++N 
Sbjct: 3  AHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33

Length = 459

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 17/35 (48%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            VIGAG  GL  A  L   G  V V+EQ    GG
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
           SK+V VIG G +G+ AA EL   G +V ++E+   +GG+
Sbjct: 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162

Length = 622

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD-PN 56
           K V V+G+GP+GL AA +L + GH V V E+    GG  +Y  PN
Sbjct: 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPN 188

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53
           K V VIG+GP+GL  A +L K G+ V V E  H++GG   Y
Sbjct: 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472

Length = 752

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
          +IG G +GL+AA    +EG  V++LE+N  +G
Sbjct: 2  IIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-GGQWL 52
          +V ++GAGPSGL AA  L K+G +V ++E++    GG W 
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWG 58

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 79/314 (25%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V +IG GP+GL AA    + G +VV++ +  + GGQ         T+V            
Sbjct: 6   VIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQ----LTK-TTDVE----------- 49

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGH---KELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
                   ++P           FPG     EL   +K+  ++FG+         VE V  
Sbjct: 50  --------NYPG----------FPGGILGPELMEQMKEQAEKFGVEI---VEDEVEKVE- 87

Query: 132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQ 191
              G          + VK+ +   +        AV++ATG  +  R   + G ++++ K 
Sbjct: 88  -LEGG--------PFKVKTDKGTYE------AKAVIIATG--AGARKLGVPGEEEFEGKG 130

Query: 192 MHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHL--SAKSLNISEGLSKVIS 249
           +          F+ + VVV+G   S  + ++ L ++AK+V L          E L + + 
Sbjct: 131 VSYCATCDGF-FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLK 189

Query: 250 KHNN--LHLHPQIDCLREDG--RVTFVDGCWVTADTILYCTGYSYSFPF----------- 294
           K+    +  +  +  +  D    V   +      +  L   G   +              
Sbjct: 190 KNVKIEVLTNTVVKEILGDDVEGVVLKN--VKGEEKELPVDGVFIAIGHLPNTELLKGLG 247

Query: 295 -LDTKGIVVVDDDR 307
            LD  G +VVD++ 
Sbjct: 248 VLDENGYIVVDEEM 261

Length = 305

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 23/41 (56%), Positives = 24/41 (58%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53
           K V VIGAGP+GL  A EL K GH V V E  H  GG   Y
Sbjct: 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY 174

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNT 57
           +V V+GAGP+GL AA    + G RV+++++  + GG  L +  T
Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAET 208

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY-DPN 56
           K V VIGAGP+GL AA +L + GH V V E+    GG  LY  P+
Sbjct: 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPD 168

Length = 457

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHR--VVVLEQNHDVGG 49
            + +IG G +GL AA  L+K G    V + E +  VGG
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39

Length = 444

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVY-ASLRLTSP 75
          ++GAG SG V A    + G RV+++E+ + +GG   YD   DQT +    Y   +  T  
Sbjct: 6  IVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN-AYDEADDQTGILVHKYGPHIFHTDN 64

Query: 76 REIMGY----TDF------PFVLKKGRDV 94
          + +  Y    T+F         L  G+  
Sbjct: 65 KRVWDYVNQFTEFNPYQHRVLALVNGQLY 93

Length = 374

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
          V +IG GP+GL+AA    K G RV+++++   +G
Sbjct: 6  VIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39

Length = 408

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
          V VIGAGP+G VAAR   K G +V ++E+  
Sbjct: 6  VIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36

Length = 460

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGG 49
          K V +IG G +GL AA  L K+G    + +LE +  +GG
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39

Length = 451

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          V VIG+G +GL AA E  + G +V V+E+    GG 
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           V VIGAGP+GL A   L + GH V V E+    GG
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          +V ++GAGPSGL AA  L K G +V VLE++   GG
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
          V ++GAGP GL  A  L + G RV+VLE+   +
Sbjct: 13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45

Length = 500

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
           +  NV V+GAG +GLVAAR+L   G +VVVLE     GG+
Sbjct: 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276

Length = 808

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
          V ++G GP+GL+ A  L + G RVV++E+
Sbjct: 4  VLIVGGGPAGLMLALLLARAGVRVVLVER 32

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            +V VIGAG +GL AA  L K G+RV +LEQ+   GG
Sbjct: 1  ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 66/236 (27%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRL 72
           K V +IGAGP+GL AA  L   G+ V V            YD                +L
Sbjct: 19  KKVAIIGAGPAGLAAAGYLACLGYEVHV------------YD----------------KL 50

Query: 73  TSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML 132
             P  +M +    F +   R VR   G KEL        +  G+       T+V     L
Sbjct: 51  PEPGGLMLFGIPEFRIPIER-VRE--GVKEL--------EEAGVV--FHTRTKVCCGEPL 97

Query: 133 DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMD-KWK--- 188
              E   G++ ++ +V  +E     +V++ +DAV++ATG +   R   I G D       
Sbjct: 98  HEEE---GDEFVERIVSLEE-----LVKK-YDAVLIATGTWK-SRKLGIPGEDLPGVYSA 147

Query: 189 -----RKQMHSHIY----RVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLS 234
                R +     Y    +VP P   + VVVVG  L+  D ++E V + A++V+L+
Sbjct: 148 LEYLFRIRAAKLGYLPWEKVP-PVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLA 202

Length = 352

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
           +V VIG G +GL+AA    K G RV+++++   +G
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLG 36

Length = 405

>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH 63
          Q K V V+G G SGL AAR L K G  V V +      G        +  EV 
Sbjct: 6  QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVE 58

Length = 448

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 53/297 (17%), Positives = 83/297 (27%), Gaps = 73/297 (24%)

Query: 23  SGLVAARELRKEGHRVVVLEQNHDVGG----------------QWLYDPNTDQTEVHSSV 66
           +GL AAREL + G  V VLE    VGG                QW    +     + + +
Sbjct: 2   AGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWF---HGAYPNLLNLL 58

Query: 67  YA---SLRLTSPREIMGYTDFPFVLKKGRDVRRF--PGHKELWLYLKDFCQ---RFGLRE 118
                 L L            PFV  K R       PG     L+L           L E
Sbjct: 59  LELGLELGLLLFPF----PGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEE 114

Query: 119 MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY----- 173
            IR    +    +L   EL +  DL+ +          ++   +F +++     +     
Sbjct: 115 PIRRALLLLVALLLLAPEL-LELDLLSFSDLLSAAGFLELFLLLFRSLLAGALGFLPLEL 173

Query: 174 ---SYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
                     +  ++                                Q I+  L  +   
Sbjct: 174 SARLALLSLRLFDLEDGGVVFPGGGFTLPLG-------------GLPQLIAAALGLLGGR 220

Query: 231 VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTG 287
           V L+           +V S          I    +   VT VDG  + AD ++    
Sbjct: 221 VRLNT----------RVRS----------ITKSGDGVTVTTVDGRTIEADAVIVTVP 257

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          VIG+GP+G  AA +  K G RV V+E+  +VGG
Sbjct: 10 VIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42

Length = 461

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          + ++GAG +GL AA  LR+ G  V V E+   VGG+
Sbjct: 4  IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR 39

Length = 331

>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
          + +IG G  G   A ELR+ G  VVV++++ + 
Sbjct: 1  IIIIGYGRVGRSLAEELREGGPDVVVIDKDPER 33

This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 8   QCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
             A    + V+G+GPSGL+ A  L  EG  V V E  HD+GG
Sbjct: 302 AAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343

Length = 944

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          V VIG G +G+ AAR L     +V +LE    +GG
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37

Length = 435

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 1  MVSDDHQQCAQSKNVCVIGAGPSGLVAARELR-KEGHRVVVLEQNHDVGGQ--------- 50
              +    A SK+V V+GAG SGL AA  L  K G  V+V E    VGG          
Sbjct: 1  SAIAEGSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGF 60

Query: 51 -WLYDPNTDQT---EVHSSVYASLR 71
           W   PN+ Q    E+ S+V + LR
Sbjct: 61 IWEEGPNSFQPSDPELTSAVDSGLR 85

Length = 496

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
          V VIG GPSG  AA  L + G   ++LE+   
Sbjct: 3  VAVIGGGPSGATAAETLARAGIETILLERALS 34

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 41.3 bits (98), Expect = 8e-04
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          AQ  +  VIGAG +G   A      G +V ++E    +GG
Sbjct: 3  AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIE-RGLLGG 41

Length = 463

>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN--HDVGGQ 50
          +V V+GAG +GLVAA EL   G RV++L+Q    ++GGQ
Sbjct: 7  DVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45

Length = 552

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
            +V ++GAG SGL AAR+L + G +V VLE     GG+
Sbjct: 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222

Length = 881

>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
            + +IGAG  G   AREL +EGH VV+++++ +
Sbjct: 1  MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34

Length = 225

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
          ++ + C++G GP+G++    L + G  V VLE++ D
Sbjct: 5  ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40

Length = 407

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
          V V+GAGP+G  AA  L  +G RV++LE+
Sbjct: 3  VVVVGAGPAGASAAYRLADKGLRVLLLEK 31

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 33/181 (18%), Positives = 49/181 (27%), Gaps = 53/181 (29%)

Query: 16  CVIGAGPSGLVAAREL----RKEGHRVVVLEQNHD-VGGQWLYDPNTDQTEVHSSVYASL 70
            +IGAGP GL     L          + V + +    GG W     TDQ           
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVW----RTDQPPQL------- 49

Query: 71  RLTSPREIMG-YTDFPFVL-----KKGRDVRRFPGHK----ELW-LYLKDFCQRFG--LR 117
            L +P   M  + D P         +G +             L+  YL+           
Sbjct: 50  LLNTPAAQMSLFPDDPPSFLEWLEAQGEEEAGLDPDDFPPRALFGEYLRWRFSELLARAP 109

Query: 118 EMIRFN------TRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171
             +           +   G      + + +                      DAVV+ATG
Sbjct: 110 AGVTVRVHRAEVVDLRPRG--GGYTVTLADG----------------ATLRADAVVLATG 151

Query: 172 H 172
           H
Sbjct: 152 H 152

Length = 153

>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family oxidoreductase 1

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 4   DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           D+  + A   +V V+G GP+GL AAR L   GHRV + E++  +GG
Sbjct: 364 DEGGRAATPGDVLVVGGGPAGLEAARVLAARGHRVTLAERSAHLGG 409

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp. The function of this oxidoreductase is unknown. Length = 633

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 26/160 (16%)

Query: 148 VKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMH-----SHIYRVPEP 202
           V  +  K ++  EE +D ++++ G  + P +P+I+G++      +        I +  + 
Sbjct: 77  VVVRNNKTNETYEESYDYLILSPG--ASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK 134

Query: 203 FRNEVVVVVGNSLSGQDISMELVEVAKE-------VHLSAKSLN--ISEGLSKVI----S 249
            + E VV++G    G  I +E+ E  +E       +H S + LN    E +++++     
Sbjct: 135 NKVENVVIIG----GGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELK 190

Query: 250 KHN-NLHLHPQIDCLREDGRV-TFVDGCWVTADTILYCTG 287
           KH  NL L+ ++D +  + RV  F  G    AD ++  TG
Sbjct: 191 KHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATG 230

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            V + GAG +GL AA EL   G+ V + E    +GG
Sbjct: 1  MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37

Length = 485

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 28/163 (17%)

Query: 164 DAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPE-PFRNEVVVVVGNSLSGQDISM 222
           D +V+A G  S P +P     D   R   +  I R+PE P   E +V+VG    G  I+ 
Sbjct: 133 DQIVIAAG--SRPYIPPAI-ADSGVRYHTNEDIMRLPELP---ESLVIVG----GGYIAA 182

Query: 223 ELVEV----AKEVHLSAKSL--------NISEGLSKVISKHNNLHLHPQIDCLREDGR-- 268
           E   V       V +  +S         +IS+  +++  K  ++ L   +  + +DG   
Sbjct: 183 EFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGV 242

Query: 269 -VTFVDGCWVTADTILYCTGYSYSFPFLD--TKGIVVVDDDRV 308
            +T  DG  VTAD +L  TG   +   LD    G+ V +D R+
Sbjct: 243 TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRI 285

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLE 42
            ++G+G +G V A  L   G  V+VLE
Sbjct: 10 YVIVGSGSAGSVLAARLSDAGLSVLVLE 37

Length = 542

>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
          Q+K + V G G +G+     LRK G  V   +  
Sbjct: 4  QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37

Length = 445

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 4   DDHQQC----AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLE 42
            D  +        K V V+G G  GL  A  L K G  V V+E
Sbjct: 130 IDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVE 172

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
          V V+G GP+G+ AA    + G +V+++E+   +GG  
Sbjct: 2  VVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGMA 38

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 11 QSKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVG 48
             +V +IG G  G   A EL +      V +LE+   V 
Sbjct: 2  MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41

Length = 429

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVL 41
          V V+G+G +GL AA   R+ G RV+V+
Sbjct: 19 VVVVGSGVAGLTAALAARRAGRRVLVV 45

Length = 541

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
           + +IGAG  GL AA  L+++GH V V E+N  V
Sbjct: 2  KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	100.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PLN02546	558	glutathione reductase	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.98
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.98
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.98
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.98
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.98
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.98
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.97
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.97
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.97
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.97
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.97
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.97
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.96
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.96
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.96
PRK12831	464	putative oxidoreductase; Provisional	99.96
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.96
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.96
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.95
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.95
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.95
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.95
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.95
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.94
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.94
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.93
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.93
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.93
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.93
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.93
PRK13984	604	putative oxidoreductase; Provisional	99.93
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.93
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.92
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.91
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.91
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.91
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.91
PLN02852	491	ferredoxin-NADP+ reductase	99.9
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.9
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.89
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.76
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.75
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.75
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.74
PTZ00188	506	adrenodoxin reductase; Provisional	99.73
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.71
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.63
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.62
COG2081	408	Predicted flavoproteins [General function predicti	99.57
PRK09897	534	hypothetical protein; Provisional	99.57
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.57
KOG2755	334	consensus Oxidoreductase [General function predict	99.51
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.45
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.44
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.37
PRK06847	375	hypothetical protein; Provisional	99.28
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.26
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.25
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.22
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.19
PRK10157	428	putative oxidoreductase FixC; Provisional	99.17
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.16
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.14
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.13
PRK06834	488	hypothetical protein; Provisional	99.12
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.1
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.1
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.09
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.09
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.08
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.07
PRK08244	493	hypothetical protein; Provisional	99.06
PLN02463	447	lycopene beta cyclase	99.05
PRK10015	429	oxidoreductase; Provisional	99.05
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.05
PRK06184	502	hypothetical protein; Provisional	99.05
PRK07045	388	putative monooxygenase; Reviewed	99.04
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.03
PRK06126	545	hypothetical protein; Provisional	99.03
PRK06185	407	hypothetical protein; Provisional	99.02
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.01
PRK07190	487	hypothetical protein; Provisional	99.01
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.01
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.0
PLN02697	529	lycopene epsilon cyclase	98.99
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.99
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.99
PRK08163	396	salicylate hydroxylase; Provisional	98.99
PRK07538	413	hypothetical protein; Provisional	98.98
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.97
PRK08013	400	oxidoreductase; Provisional	98.96
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.95
PRK11445	351	putative oxidoreductase; Provisional	98.95
PRK09126	392	hypothetical protein; Provisional	98.95
PRK07588	391	hypothetical protein; Provisional	98.95
PRK06753	373	hypothetical protein; Provisional	98.95
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.94
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.94
PLN02661	357	Putative thiazole synthesis	98.92
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.92
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.91
PRK07236	386	hypothetical protein; Provisional	98.91
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.91
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.89
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.88
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.88
PRK08274	466	tricarballylate dehydrogenase; Validated	98.87
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.86
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.86
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.84
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.84
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.83
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.83
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.83
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.82
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.8
PRK06996	398	hypothetical protein; Provisional	98.8
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.8
PRK06475	400	salicylate hydroxylase; Provisional	98.8
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.8
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.79
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.79
PRK07121	492	hypothetical protein; Validated	98.78
PRK05868	372	hypothetical protein; Validated	98.77
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.77
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.77
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.76
PRK08294	634	phenol 2-monooxygenase; Provisional	98.76
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.75
COG0579	429	Predicted dehydrogenase [General function predicti	98.73
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.72
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.71
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.7
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.7
PRK08401	466	L-aspartate oxidase; Provisional	98.7
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.67
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.67
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.66
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.66
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.66
PRK06116	450	glutathione reductase; Validated	98.65
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.64
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.64
PRK06175	433	L-aspartate oxidase; Provisional	98.64
PRK07804	541	L-aspartate oxidase; Provisional	98.64
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.63
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.63
PRK12839	572	hypothetical protein; Provisional	98.63
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.62
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.62
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.62
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.62
TIGR02053	463	MerA mercuric reductase. This model represents the	98.61
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.61
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.61
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.61
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.6
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.6
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.6
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.6
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.59
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.59
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.58
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.58
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.57
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.57
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.57
PRK06370	463	mercuric reductase; Validated	98.57
PLN02985	514	squalene monooxygenase	98.56
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.56
PRK08275	554	putative oxidoreductase; Provisional	98.56
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.56
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.55
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.55
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.55
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.55
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.55
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.55
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.54
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.53
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.53
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.52
PLN02507	499	glutathione reductase	98.52
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
PRK07846	451	mycothione reductase; Reviewed	98.51
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.51
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.5
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.5
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.49
PRK05257	494	malate:quinone oxidoreductase; Validated	98.48
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.47
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.45
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.45
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.45
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.45
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.45
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.44
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.44
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.44
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.44
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.43
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.42
PRK08071	510	L-aspartate oxidase; Provisional	98.41
PRK07208	479	hypothetical protein; Provisional	98.41
PTZ00058	561	glutathione reductase; Provisional	98.4
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.4
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.4
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.4
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.39
PLN02815	594	L-aspartate oxidase	98.39
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.39
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.38
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.38
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.38
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.37
PRK14727	479	putative mercuric reductase; Provisional	98.37
PRK07512	513	L-aspartate oxidase; Provisional	98.36
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.35
PRK09077	536	L-aspartate oxidase; Provisional	98.35
PRK14694	468	putative mercuric reductase; Provisional	98.34
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.34
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.32
PRK07395	553	L-aspartate oxidase; Provisional	98.31
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.31
PTZ00052	499	thioredoxin reductase; Provisional	98.3
PLN02546	558	glutathione reductase	98.3
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.3
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.3
PRK13748	561	putative mercuric reductase; Provisional	98.29
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.29
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.28
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.27
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.27
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.26
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.26
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.26
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.26
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.24
PLN02268	435	probable polyamine oxidase	98.24
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.24
PLN02568	539	polyamine oxidase	98.23
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.21
PRK10262	321	thioredoxin reductase; Provisional	98.21
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.21
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.2
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.19
PRK07233	434	hypothetical protein; Provisional	98.18
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.16
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.16
PLN02576	496	protoporphyrinogen oxidase	98.16
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.15
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.14
PTZ00367	567	squalene epoxidase; Provisional	98.14
COG3349	485	Uncharacterized conserved protein [Function unknow	98.13
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.13
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.12
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.11
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.1
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.1
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.1
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.09
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.09
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.08
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.07
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.06
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.05
COG2081	408	Predicted flavoproteins [General function predicti	98.05
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.05
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.04
PLN02676	487	polyamine oxidase	98.02
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.0
PLN02529	738	lysine-specific histone demethylase 1	97.96
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.91
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.85
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.84
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.83
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.82
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.82
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.82
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.79
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.78
PLN02487	569	zeta-carotene desaturase	97.77
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.76
PRK06847	375	hypothetical protein; Provisional	97.73
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.7
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.7
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.69
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.69
PRK12831	464	putative oxidoreductase; Provisional	97.69
PLN03000	881	amine oxidase	97.68
PLN02612	567	phytoene desaturase	97.67
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.65
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.64
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.63
PLN02976	1713	amine oxidase	97.61
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.6
PRK05868	372	hypothetical protein; Validated	97.6
PRK07236	386	hypothetical protein; Provisional	97.6
PRK06753	373	hypothetical protein; Provisional	97.57
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.53
PRK07588	391	hypothetical protein; Provisional	97.52
PLN02463	447	lycopene beta cyclase	97.52
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.48
KOG2853	509	consensus Possible oxidoreductase [General functio	97.47
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.47
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.44
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.44
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.44
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.43
PRK08163	396	salicylate hydroxylase; Provisional	97.42
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.41
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.4
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.36
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.36
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.35
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.35
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.35
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.3
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.29
PRK02106	560	choline dehydrogenase; Validated	97.28
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.26
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.24
PLN02852	491	ferredoxin-NADP+ reductase	97.23
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.23
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.21
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.2
PRK06834	488	hypothetical protein; Provisional	97.19
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.17
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.14
PRK09126	392	hypothetical protein; Provisional	97.13
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.13
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.13
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.13
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.12
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.11
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.1
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.08
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.05
PTZ00188	506	adrenodoxin reductase; Provisional	97.04
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.04
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.03
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.01
PRK07045	388	putative monooxygenase; Reviewed	97.01
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.0
PRK06184	502	hypothetical protein; Provisional	97.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.99
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.99
COG3573	552	Predicted oxidoreductase [General function predict	96.99
PRK08013	400	oxidoreductase; Provisional	96.97
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.96
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.96
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	96.96
PLN02697	529	lycopene epsilon cyclase	96.95
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.94
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.92
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	96.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.92
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.91
PRK06475	400	salicylate hydroxylase; Provisional	96.85
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	96.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.85
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.84
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.84
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.84
PRK07190	487	hypothetical protein; Provisional	96.83
PRK08244	493	hypothetical protein; Provisional	96.83
PRK13984	604	putative oxidoreductase; Provisional	96.82
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.79
PRK09897	534	hypothetical protein; Provisional	96.79
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	96.78
PRK10157	428	putative oxidoreductase FixC; Provisional	96.78
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.71
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	96.71
KOG2755	334	consensus Oxidoreductase [General function predict	96.7
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.68
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.64
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.64
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.6
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.59
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.57
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.56
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.55
PLN02661	357	Putative thiazole synthesis	96.55
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.53
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.5
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.5
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.47
PLN02785	587	Protein HOTHEAD	96.47
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.46
PRK11445	351	putative oxidoreductase; Provisional	96.45
PRK10015	429	oxidoreductase; Provisional	96.43
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.4
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	96.36
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.36
PRK07538	413	hypothetical protein; Provisional	96.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.27
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.24
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.23
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.22
PRK06185	407	hypothetical protein; Provisional	96.21
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.2
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.15
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.15
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.14
PRK06996	398	hypothetical protein; Provisional	96.1
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.06
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.98
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.97
PRK06126	545	hypothetical protein; Provisional	95.92
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.92
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.88
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.87
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.83
COG0579	429	Predicted dehydrogenase [General function predicti	95.82
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.81
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.79
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	95.78
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.77
KOG2852	380	consensus Possible oxidoreductase [General functio	95.77
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.66
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.6
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.56
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.52
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	95.44
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.35
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.33
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.32
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.3
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.23
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	95.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.2
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.15
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.07
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.02
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.97
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.93
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.82
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	94.8
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.72
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.72
PRK08294	634	phenol 2-monooxygenase; Provisional	94.7
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	94.65
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.64
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.64
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.55
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.55
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	94.5
PRK04148	134	hypothetical protein; Provisional	94.48

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=1.4e-75  Score=582.87  Aligned_cols=429  Identities=49%  Similarity=0.860  Sum_probs=379.4

Q ss_pred             hccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC---------CccccccccceecCCccc
Q 044575            8 QCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT---------EVHSSVYASLRLTSPREI   78 (454)
Q Consensus         8 ~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   78 (454)
                      .+...++|+|||||+|||+||++|++.|++|+|||+++.+||+|++.+....+         ..++++|.++++|+|+..
T Consensus         6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~   85 (461)
T PLN02172          6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC   85 (461)
T ss_pred             cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence            45667999999999999999999999999999999999999999998654321         356889999999999999


Q ss_pred             cccCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           79 MGYTDFPFVLKK---GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        79 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                      |+|+|||++...   ..+.+.||++.++.+||++|++++++.++|+|+++|++|++.+.          +|+|++.+++ 
T Consensus        86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~----------~w~V~~~~~~-  154 (461)
T PLN02172         86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG----------KWRVQSKNSG-  154 (461)
T ss_pred             ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC----------eEEEEEEcCC-
Confidence            999999997521   12457899999999999999999999999999999999987532          8999987643 


Q ss_pred             CeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          156 DKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                      +...+..||+||||||+++.|++|.+||++.|.|..+|++.|+.++.+++|+|+|||+|.||+|+|.+|+..+++|+++.
T Consensus       155 ~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~  234 (461)
T PLN02172        155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS  234 (461)
T ss_pred             CceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEE
Confidence            23345689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccCcc
Q 044575          236 KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHT  315 (454)
Q Consensus       236 r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~  315 (454)
                      |+..... ..+......+++.+..|..+.+++.|+|+||+.+++|.||+||||++++|||+..+.+.+|++.+.++|+|+
T Consensus       235 r~~~~~~-~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~  313 (461)
T PLN02172        235 RASESDT-YEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV  313 (461)
T ss_pred             eeccccc-cccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhh
Confidence            9765421 122222334677788888877777899999999999999999999999999998788889999888999999


Q ss_pred             cCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCCCCCcccccc--cHHHHH
Q 044575          316 FPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIA--NFEYCD  393 (454)
Q Consensus       316 ~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~  393 (454)
                      |++...|+|+|+|.+..+.+++++|+||+|+|++++|+..||+.++|++++..+.+.++..+.++++.|.+.  ++.|+|
T Consensus       314 f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~~~y~~  393 (461)
T PLN02172        314 FPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQSEYLN  393 (461)
T ss_pred             cCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCccHHHHHH
Confidence            998656999999999878889999999999999999999999999999999999888777788888889875  679999


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHhhCCccccccccCCCCChHHHHHHhcCCCCccc
Q 044575          394 RYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQL  448 (454)
Q Consensus       394 ~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  448 (454)
                      +|++.+|++++++|++++++....+...++..||+.|++.++++|++++.....|
T Consensus       394 ~la~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  448 (461)
T PLN02172        394 WIAEECGCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEAYEDFARKKL  448 (461)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhCHHhhccccccccceeecccccceEEE
Confidence            9999999999999999999999999999999999999999999999998765443

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=1.9e-69  Score=545.04  Aligned_cols=405  Identities=40%  Similarity=0.681  Sum_probs=271.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      ++|+|||||+|||++|++|++.|++++|||+++++||+|++......  -.+++|+++.+|+|+.+|.|+|||+|.    
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~--g~~~~y~sl~~n~sk~~~~fsdfp~p~----   75 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPED--GRSSVYDSLHTNTSKEMMAFSDFPFPE----   75 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCC--SEGGGSTT-B-SS-GGGSCCTTS-HCC----
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCC--CccccccceEEeeCchHhcCCCcCCCC----
Confidence            68999999999999999999999999999999999999998754322  245799999999999999999999998    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      +.+.|+++.++.+|+++|+++|++.++|+||++|++|++.++..    .++ +|+|++.+.  +...+..||+||+|||+
T Consensus        76 ~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~----~~~-~W~V~~~~~--g~~~~~~fD~VvvatG~  148 (531)
T PF00743_consen   76 DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS----ATG-KWEVTTEND--GKEETEEFDAVVVATGH  148 (531)
T ss_dssp             CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-----ET-EEEEEETTT--TEEEEEEECEEEEEE-S
T ss_pred             CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC----CCc-eEEEEeecC--CeEEEEEeCeEEEcCCC
Confidence            88999999999999999999999999999999999999875420    122 899987643  44556789999999999


Q ss_pred             CCCCCCCC--CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Cc-------
Q 044575          173 YSYPRLPS--IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SE-------  242 (454)
Q Consensus       173 ~~~p~~p~--i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~-------  242 (454)
                      ++.|++|.  +||++.|.|.++||++|++++.++||+|+|||+|+||+|+|.+|+..+++|+++.|++.+ .+       
T Consensus       149 ~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~  228 (531)
T PF00743_consen  149 FSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGY  228 (531)
T ss_dssp             SSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------------
T ss_pred             cCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccc
Confidence            99999995  999999999999999999999999999999999999999999999999999999998876 00       


Q ss_pred             --------------------cchhhh-----c-------------------------------cCCCeEEcCceeEEecC
Q 044575          243 --------------------GLSKVI-----S-------------------------------KHNNLHLHPQIDCLRED  266 (454)
Q Consensus       243 --------------------~~~~~l-----~-------------------------------~~~~i~~~~~v~~v~~~  266 (454)
                                          .+...+     .                               ..+++..++.|++++++
T Consensus       229 P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~  308 (531)
T PF00743_consen  229 PFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTEN  308 (531)
T ss_dssp             ----------------------------------------------------------------------EE-EEEE-SS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                000000     0                               00124566788888765


Q ss_pred             CcEEEeCCCEE-eeceEEEccCcccCCcCCCCCCceeeCCCCcccccCcccCCCC-CCCceEecccccc-cchhHHHHHH
Q 044575          267 GRVTFVDGCWV-TADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSL-APSLSFVGIPRKL-IGFPFFESQA  343 (454)
Q Consensus       267 ~~v~~~dG~~i-~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~-~p~l~~iG~~~~~-~~~~~a~~qa  343 (454)
                       .|+|.||+++ ++|.||+||||+.++|||++. .+.++++.. .+|+++|++.. .|+|+|+|.+... ..+|++|+||
T Consensus       309 -~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~-~~~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQA  385 (531)
T PF00743_consen  309 -SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDES-LIKVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQA  385 (531)
T ss_dssp             -EEEETTSEEEEE-SEEEE---EE---TTB-TT-TT-S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHH
T ss_pred             -cccccccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence             5999999986 599999999999999999964 344444444 79999998753 4899999998753 5679999999


Q ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCC-CCCcccccccHHHHHHHHHHcCCCC-chH---HHHHHHHHHhhC
Q 044575          344 KWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGI-PKHNTHDIANFEYCDRYADQIGFPH-LEE---WRKGLCISALVN  418 (454)
Q Consensus       344 ~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~l~~~~g~~~-~~~---~~~~l~~~~~~~  418 (454)
                      ||+|++++|+.+||+.++|++++.+..+.+..+.. ..++....+++.|+|+||+.+|+.| +..   ...+|++.+++.
T Consensus       386 rw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~~~~~~~~~d~~~y~deLA~~iG~~P~~~~l~~~dp~l~~~~~~g  465 (531)
T PF00743_consen  386 RWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGFSPRHTIQVDYIDYMDELAREIGCKPNFWKLFLTDPKLARKLYFG  465 (531)
T ss_dssp             HHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHTTS--------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988666544322 1112222356799999999999964 221   235677777777


Q ss_pred             CccccccccCC----CCChH
Q 044575          419 SDANLETYRDS----WDDHE  434 (454)
Q Consensus       419 ~~~~~~~~r~~----~~~~~  434 (454)
                      .+ .++.||+.    |+||+
T Consensus       466 p~-~p~~YRL~Gpg~w~gar  484 (531)
T PF00743_consen  466 PC-TPYQYRLFGPGKWPGAR  484 (531)
T ss_dssp             --------------------
T ss_pred             cc-ccccccccccccccccc
Confidence            66 59999998    66654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.5e-61  Score=467.01  Aligned_cols=417  Identities=47%  Similarity=0.780  Sum_probs=351.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||+|||++|+.|+++|++++||||++.+||+|.+.+...  ..++++|+++++|+|+++|+|+|+|++.  
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~--~~~ss~Y~~l~tn~pKe~~~~~dfpf~~--   80 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE--VVHSSVYKSLRTNLPKEMMGYSDFPFPE--   80 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc--ccccchhhhhhccCChhhhcCCCCCCcc--
Confidence            358999999999999999999999999999999999999999986654  4577899999999999999999999998  


Q ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           91 GRD-VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                        . ...||++.++.+||++||++|++.++|+|+++|..|+...++         .|.|.+.+..+. .....||.||+|
T Consensus        81 --~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g---------kW~V~~~~~~~~-~~~~ifd~VvVc  148 (448)
T KOG1399|consen   81 --RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG---------KWRVTTKDNGTQ-IEEEIFDAVVVC  148 (448)
T ss_pred             --cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC---------ceeEEEecCCcc-eeEEEeeEEEEc
Confidence              5 445599999999999999999999999999999999987643         899999876533 457789999999


Q ss_pred             cCCCCCCCCCCCCC--cCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh
Q 044575          170 TGHYSYPRLPSIKG--MDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV  247 (454)
Q Consensus       170 tG~~~~p~~p~i~G--~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~  247 (454)
                      ||++..|++|.+||  ++.|.|..+||++|+.++.|++|+|+|||+|+||+|+|.+++..+++|+++.++..........
T Consensus       149 tGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~  228 (448)
T KOG1399|consen  149 TGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEI  228 (448)
T ss_pred             ccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccce
Confidence            99997799999998  6799999999999999999999999999999999999999999999999987610011111111


Q ss_pred             hccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEe
Q 044575          248 ISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFV  327 (454)
Q Consensus       248 l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~i  327 (454)
                      +  ..+++..+.|+.+++++.+.+.++....+|.||+||||...+|||+..+.+.+.++.+.++|+++|++...+++.++
T Consensus       229 ~--~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~  306 (448)
T KOG1399|consen  229 L--GENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLA  306 (448)
T ss_pred             e--ecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCcccccc
Confidence            1  12455555588888887666667777779999999999999999998776777888888999999998777888999


Q ss_pred             cccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCCC-CCcccccc---cHHHHHHHHHHcCCCC
Q 044575          328 GIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIP-KHNTHDIA---NFEYCDRYADQIGFPH  403 (454)
Q Consensus       328 G~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~y~~~l~~~~g~~~  403 (454)
                      |++.....++..+.|++|+++++.|+.++|+.++|+.+.......++..+.+ .++.|..+   +..|..+++..-|++.
T Consensus       307 ~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~g~~~  386 (448)
T KOG1399|consen  307 GLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLCGFPK  386 (448)
T ss_pred             ccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhcCCCC
Confidence            8887667889999999999999999999999999999999888777777776 66777763   5688889999999988


Q ss_pred             chHHHHHHHHHHhhCCccccccccCCCCCh-HHHHHHhcCCCC
Q 044575          404 LEEWRKGLCISALVNSDANLETYRDSWDDH-ELLQEALQSPHF  445 (454)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~  445 (454)
                      .+.|+....+......+.....||..|.++ ++..++.+.-+.
T Consensus       387 ~~~~~~~~~~~g~~~~y~~~~~~~~~w~g~~~~~~~~~~~~~~  429 (448)
T KOG1399|consen  387 TEPWLAKEGWKGPCGLYAYGLTGPDKWDGAAKLILEADDDIGK  429 (448)
T ss_pred             cchHHhhhhccCccceeEeecccCcccccHHHHHHHHHHhhcc
Confidence            888887776554444445567777789999 677777776654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-36  Score=301.89  Aligned_cols=205  Identities=40%  Similarity=0.650  Sum_probs=188.7

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      +.+.+||+|||||+|||++|.+|++.|.. ++||||++.+||+|++           ..|++++.++|+..++|+.+|++
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~-----------~ry~~l~~~~p~~~~~~~~~p~~   73 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY-----------NRYPGLRLDSPKWLLGFPFLPFR   73 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh-----------ccCCceEECCchheeccCCCccC
Confidence            45678999999999999999999999998 9999999999999996           47999999999999999999996


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                           +...|+...++.+|+.++++++++...|++++.|..++..+++.        .|+|++.++...   ++.+|+||
T Consensus        74 -----~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~--------~w~V~~~~~~~~---~~~a~~vV  137 (443)
T COG2072          74 -----WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTK--------RWTVTTSDGGTG---ELTADFVV  137 (443)
T ss_pred             -----CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCC--------eEEEEEcCCCee---eEecCEEE
Confidence                 34567777789999999999999999999999999988887654        899999987522   17799999


Q ss_pred             EccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          168 VATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|||+++.|++|.|+|.+.|.+.++||.+++++.+++||+|+|||+|+||+++|.+|++.+++||++.|++..
T Consensus       138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2e-35  Score=290.31  Aligned_cols=295  Identities=22%  Similarity=0.290  Sum_probs=204.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCC-cccc-ccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSS-VYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..||++||||||||..||.++++.|.+|+++|+...+||+|.+.+|+|+|. ++.. .+..+.....  .++     ...
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~--~~G-----i~~   75 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK--EYG-----ISA   75 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccc--ccc-----eec
Confidence            469999999999999999999999999999999888999999999999982 2221 1222211110  010     000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLYLKD-----------FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                          ..+ -....++.+..++           +.+..++.  +..+ +..-   .+           ..+|.+...   .
T Consensus        76 ----~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G-~a~f---~~-----------~~~v~V~~~---~  130 (454)
T COG1249          76 ----EVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRG-EARF---VD-----------PHTVEVTGE---D  130 (454)
T ss_pred             ----CCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEE-EEEE---CC-----------CCEEEEcCC---C
Confidence                000 1223334333333           22222332  1111 1111   11           234555542   1


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      ..++++|++|||||  ++|..|+++|++...  ++.+....... .-+++++|||||++|+|+|..++++|.+||+++|.
T Consensus       131 ~~~~~a~~iiIATG--S~p~~~~~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~  205 (454)
T COG1249         131 KETITADNIIIATG--SRPRIPPGPGIDGAR--ILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG  205 (454)
T ss_pred             ceEEEeCEEEEcCC--CCCcCCCCCCCCCCe--EEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            23889999999999  999999988876532  33333322222 34589999999999999999999999999999999


Q ss_pred             CCcCccchhhhc--------cC-CCeEEcCceeEEecCC---cEEEeCCC--EEeeceEEEccCcccCCcCCC-------
Q 044575          238 LNISEGLSKVIS--------KH-NNLHLHPQIDCLREDG---RVTFVDGC--WVTADTILYCTGYSYSFPFLD-------  296 (454)
Q Consensus       238 ~~~~~~~~~~l~--------~~-~~i~~~~~v~~v~~~~---~v~~~dG~--~i~~D~vI~atG~~~~~~~l~-------  296 (454)
                      +++++.+++.+.        +. ..++.+..+++++.++   .+.+++|+  ++++|.|++|+|++||++-|.       
T Consensus       206 ~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~  285 (454)
T COG1249         206 DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE  285 (454)
T ss_pred             CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence            999776655432        22 3577788888886543   47777877  688999999999999998532       


Q ss_pred             --CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575          297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g  352 (454)
                        ++|.|.||+.+.          ++.|++|++||+...+ ..+.|..|++.+|.++.|
T Consensus       286 ~~~rg~I~VD~~~~----------Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g  334 (454)
T COG1249         286 LDDRGFIKVDDQMT----------TNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG  334 (454)
T ss_pred             ECCCCCEEeCCccc----------cCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence              456777774443          5579999999997655 458999999999999997

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=3e-34  Score=274.40  Aligned_cols=277  Identities=23%  Similarity=0.276  Sum_probs=209.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      +||+|||||+||+++|..|++.|++|+|||+++ .||.|.....                     ...++++        
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~---------------------~~~~~~~--------   50 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE---------------------VENYPGF--------   50 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc---------------------ccccCCC--------
Confidence            589999999999999999999999999999875 7887763210                     0011111        


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                        +...+..++..++.++++++++.  +++ ++|.+|+..+.          .|.|++.++.     ++.||+||+||| 
T Consensus        51 --~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~~----------~~~v~~~~~~-----~~~~d~liiAtG-  109 (300)
T TIGR01292        51 --PEGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSDR----------PFKVKTGDGK-----EYTAKAVIIATG-  109 (300)
T ss_pred             --CCCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecCC----------eeEEEeCCCC-----EEEeCEEEECCC-
Confidence              11234578999999999999987  666 89999987542          6888776543     789999999999 


Q ss_pred             CCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--Cccchhhhcc
Q 044575          173 YSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI--SEGLSKVISK  250 (454)
Q Consensus       173 ~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~--~~~~~~~l~~  250 (454)
                       +.|+.|.+||.+.+.+..++.........+++++|+|||+|.+|+|+|..|++.+++|+++.|.+.+  .+.+.+.+.+
T Consensus       110 -~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~  188 (300)
T TIGR01292       110 -ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRK  188 (300)
T ss_pred             -CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHh
Confidence             7889899999877666666655554445567899999999999999999999999999999998765  2223334433


Q ss_pred             --CCCeEEcCceeEEecCC---cEEEeC---C--CEEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccccCc
Q 044575          251 --HNNLHLHPQIDCLREDG---RVTFVD---G--CWVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPLYEH  314 (454)
Q Consensus       251 --~~~i~~~~~v~~v~~~~---~v~~~d---G--~~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~~~~  314 (454)
                        ..+++.+..++++..++   .+++.+   |  .++++|.||+|||++|+.+++.      ++|.+.+|++..      
T Consensus       189 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~------  262 (300)
T TIGR01292       189 NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMR------  262 (300)
T ss_pred             CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCc------
Confidence              34677788899987654   244432   4  4688999999999999987754      335555555432      


Q ss_pred             ccCCCCCCCceEeccccc--ccchhHHHHHHHHHHHHHc
Q 044575          315 TFPPSLAPSLSFVGIPRK--LIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       315 ~~~~~~~p~l~~iG~~~~--~~~~~~a~~qa~~~a~~i~  351 (454)
                          ++.|++|++||+..  ......|..||+.+|.++.
T Consensus       263 ----t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  297 (300)
T TIGR01292       263 ----TSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE  297 (300)
T ss_pred             ----cCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence                45799999999986  3346789999999998875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=1.4e-35  Score=284.03  Aligned_cols=336  Identities=21%  Similarity=0.249  Sum_probs=230.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      +++|||||||++|+.+|+.|.+..  .+|++||+++..                  .+..+........           
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h------------------l~~plL~eva~g~-----------   53 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH------------------LFTPLLYEVATGT-----------   53 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc------------------ccchhhhhhhcCC-----------
Confidence            478999999999999999999975  899999998742                  2222222222222           


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                              .+..++...+++.++..+ +   -....+|++|+..            ..+|++.+..     ++.||+|||
T Consensus        54 --------l~~~~i~~p~~~~~~~~~~v---~~~~~~V~~ID~~------------~k~V~~~~~~-----~i~YD~LVv  105 (405)
T COG1252          54 --------LSESEIAIPLRALLRKSGNV---QFVQGEVTDIDRD------------AKKVTLADLG-----EISYDYLVV  105 (405)
T ss_pred             --------CChhheeccHHHHhcccCce---EEEEEEEEEEccc------------CCEEEeCCCc-----cccccEEEE
Confidence                    122344444555555333 2   2446789999987            5568888744     789999999


Q ss_pred             ccCCCCCCCCCCCCCcCCcccee--------EEeec---CCCCCCC----CCCeEEEEcCCCCHHHHHHHHhhhcC----
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQ--------MHSHI---YRVPEPF----RNEVVVVVGNSLSGQDISMELVEVAK----  229 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~--------~~~~~---~~~~~~~----~~k~vvVVG~G~sg~e~A~~l~~~~~----  229 (454)
                      |+|  +.++.+.+||..++.-..        ++.+.   +...+..    .-.+|+|||||++|+|+|.+|++...    
T Consensus       106 alG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~  183 (405)
T COG1252         106 ALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLK  183 (405)
T ss_pred             ecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhh
Confidence            999  999999999977642111        01100   0111111    12479999999999999999997532    


Q ss_pred             ---------eEEEecccCCcCccchhhhccC---------CCeEEcCceeEEecCCcEEEeCCCE-EeeceEEEccCccc
Q 044575          230 ---------EVHLSAKSLNISEGLSKVISKH---------NNLHLHPQIDCLREDGRVTFVDGCW-VTADTILYCTGYSY  290 (454)
Q Consensus       230 ---------~V~l~~r~~~~~~~~~~~l~~~---------~~i~~~~~v~~v~~~~~v~~~dG~~-i~~D~vI~atG~~~  290 (454)
                               +|+|+++.+++++.+.+.++++         +++.+++.|+++++++ |++++|++ |++|++|||+|.++
T Consensus       184 ~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         184 KFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             hhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-EEEccCCeeEecCEEEEcCCCcC
Confidence                     8999999999988887665432         5899999999998875 99999985 99999999999998


Q ss_pred             CCcCC--------CCCCceeeCCCCcccccCcccCCCCCCCceEecccccc-------cchhHHHHHHHHHHHHHc----
Q 044575          291 SFPFL--------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-------IGFPFFESQAKWIAQLLS----  351 (454)
Q Consensus       291 ~~~~l--------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-------~~~~~a~~qa~~~a~~i~----  351 (454)
                      + +++        +..|++.||++++.+         ++|++|++|||...       ++.+.|++||+++|++|.    
T Consensus       263 ~-~~~~~l~~~e~dr~Grl~V~~~L~~~---------~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~  332 (405)
T COG1252         263 S-PLLKDLSGLETDRRGRLVVNPTLQVP---------GHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK  332 (405)
T ss_pred             C-hhhhhcChhhhccCCCEEeCCCcccC---------CCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            8 332        235788888877754         35777788877732       335799999999998774    


Q ss_pred             CCCCCCCH---HHHHHHHHHHHhhhhhcCCCCCcccccccHHHHHHHHHH-cCCCCchHHHHHHHHHHhhCCcccccccc
Q 044575          352 GKRTLPSW---DQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQ-IGFPHLEEWRKGLCISALVNSDANLETYR  427 (454)
Q Consensus       352 g~~~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~-~g~~~~~~~~~~l~~~~~~~~~~~~~~~r  427 (454)
                      |+...|+.   .+.+..++.+.+.....+        ....++.++++|. +++..+..+++++.  +...|.+.++.-|
T Consensus       333 g~~l~~f~y~~~Gtl~~lG~~~av~~~g~--------~~l~G~~a~~~k~~~~~~~l~~~~~~~~--~~~~w~~~~~~~~  402 (405)
T COG1252         333 GKPLKPFKYKDKGTLASLGDFSAVADLGG--------VKLKGFLAWLLKRAAYLYYLLGIRSRLA--VALYWLTTYLTGR  402 (405)
T ss_pred             CCCCCCCcccceEEEEEccCCceeEEecc--------eeeccHHHHHHHHHHHHheecccCcHHH--HHHHHhhhhhccc
Confidence            54445553   122333333222221110        1245788888884 56655556777777  7777877665544

>PLN02507 glutathione reductase

Probab=100.00  E-value=2.9e-34  Score=290.65  Aligned_cols=296  Identities=21%  Similarity=0.203  Sum_probs=200.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEee---------CCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ---------NHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMG   80 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~---------~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~   80 (454)
                      ++||+||||||||+.||..+++.|.+|+|||+         .+.+||+|.+.+|.|+|.+ ... .+...+. ...    
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~----   99 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKN----   99 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHh----
Confidence            58999999999999999999999999999996         3579999999999998732 111 1111111 000    


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575           81 YTDFPFVLKKGRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK  149 (454)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~  149 (454)
                         +.+..    ....-....++.++....           ....++.   ....++..++..            .++|+
T Consensus       100 ---~G~~~----~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~~------------~v~V~  157 (499)
T PLN02507        100 ---YGWEI----NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGPN------------EVEVT  157 (499)
T ss_pred             ---cCccc----CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecCC------------EEEEE
Confidence               00000    000012233433333222           2222332   223344444322            56676


Q ss_pred             EeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC
Q 044575          150 SKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK  229 (454)
Q Consensus       150 ~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~  229 (454)
                      ..++   ...++.||+||||||  +.|..|.+||.+..    .++.+....+. .+++|+|||+|.+|+|+|..+++.|+
T Consensus       158 ~~~g---~~~~~~~d~LIIATG--s~p~~p~ipG~~~~----~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~  227 (499)
T PLN02507        158 QLDG---TKLRYTAKHILIATG--SRAQRPNIPGKELA----ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGA  227 (499)
T ss_pred             eCCC---cEEEEEcCEEEEecC--CCCCCCCCCCccce----echHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCC
Confidence            5543   234688999999999  89999999986431    12222221122 35899999999999999999999999


Q ss_pred             eEEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCCC-
Q 044575          230 EVHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFLD-  296 (454)
Q Consensus       230 ~V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-  296 (454)
                      +|+++++.+.+.+.+++        .+.+ .++++.+..|+++..+ +  .+.+.+|+++++|.||+|+|++|+.+++. 
T Consensus       228 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l  307 (499)
T PLN02507        228 TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNL  307 (499)
T ss_pred             eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCc
Confidence            99999998876443332        2322 3578888899998642 2  35666788999999999999999988642 


Q ss_pred             --------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 --------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 --------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                              ++|.+.+|++.+          ++.|++|++||+.... ..+.|..||+++|.++.|..
T Consensus       308 ~~~gl~~~~~G~I~Vd~~~~----------Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~  364 (499)
T PLN02507        308 EAVGVELDKAGAVKVDEYSR----------TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQ  364 (499)
T ss_pred             hhhCcEECCCCcEecCCCCc----------CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCC
Confidence                    234555555444          4679999999998644 34899999999999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=1.6e-33  Score=283.02  Aligned_cols=291  Identities=21%  Similarity=0.256  Sum_probs=199.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++||+||||||||++||..+++.|.+|+|||+ +.+||+|.+.+|.|+|.+ .+. .+..++ +.+       .+.... 
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~~-------~~g~~~-   71 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFE-DAA-------GYGWTV-   71 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHh-hhH-------hcCcCC-
Confidence            48999999999999999999999999999998 579999999999999722 111 111111 001       111100 


Q ss_pred             CCCCCCCCCCHH-----------HHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHK-----------ELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                         ... -....           ++.++++...++.++.  +. ..++..++..            ...+. .++.    
T Consensus        72 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~-~g~~~~v~~~------------~v~v~-~~g~----  127 (446)
T TIGR01424        72 ---GKA-RFDWKKLLQKKDDEIARLSGLYKRLLANAGVE--LL-EGRARLVGPN------------TVEVL-QDGT----  127 (446)
T ss_pred             ---CCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EE-EEEEEEecCC------------EEEEe-cCCe----
Confidence               000 01111           2334445555555655  33 3356555432            33332 2222    


Q ss_pred             EEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          159 VEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                       ++.||+||||||  +.|..|++||.+..    ..+...... ...+++++|||+|.+|+|+|..+++.+.+|+++++.+
T Consensus       128 -~~~~d~lIiATG--s~p~~p~i~G~~~~----~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  199 (446)
T TIGR01424       128 -TYTAKKILIAVG--GRPQKPNLPGHELG----ITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE  199 (446)
T ss_pred             -EEEcCEEEEecC--CcCCCCCCCCccce----echHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence             689999999999  89999999987531    111111111 1236899999999999999999999999999999988


Q ss_pred             CcCccchh--------hhcc-CCCeEEcCceeEEecC--C-cEEEeCCCEEeeceEEEccCcccCCcCCC---------C
Q 044575          239 NISEGLSK--------VISK-HNNLHLHPQIDCLRED--G-RVTFVDGCWVTADTILYCTGYSYSFPFLD---------T  297 (454)
Q Consensus       239 ~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------~  297 (454)
                      .+.+.+.+        .+.+ .++++.+..|+++..+  + .+.+.+|+++++|.||+|+|++|+...+.         +
T Consensus       200 ~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~  279 (446)
T TIGR01424       200 LILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELND  279 (446)
T ss_pred             CCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECC
Confidence            76544322        2222 3578888889888642  2 45667888999999999999999987532         3


Q ss_pred             CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          298 KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       298 ~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +|.+.+|++.+          ++.|++|++||+.... ..+.|..||+.+|.++.|..
T Consensus       280 ~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~~  327 (446)
T TIGR01424       280 AGAIAVDEYSR----------TSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNN  327 (446)
T ss_pred             CCcEEeCCCCc----------cCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcCC
Confidence            45566666544          4579999999998654 34799999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.4e-33  Score=283.66  Aligned_cols=298  Identities=19%  Similarity=0.229  Sum_probs=202.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccc--cccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSV--YASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+||||||||++||..|++.|.+|+|||+++.+||+|.+.+|.|++.+....  +.....     ...|.+++.  
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~-----~~~~~~~~~--   76 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQ-----NPLYSSYRV--   76 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhh-----hhhhcccCC--
Confidence            45899999999999999999999999999999988999999999999876222111  111000     000111111  


Q ss_pred             CCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                            ....+..++.++           +....++.++.  +..+ ++..++..            .++|...++   .
T Consensus        77 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~~~------------~~~v~~~~g---~  132 (461)
T PRK05249         77 ------KLRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVDPH------------TVEVECPDG---E  132 (461)
T ss_pred             ------cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEecCC------------EEEEEeCCC---c
Confidence                  111233444433           33334444544  3333 33333321            556655432   2


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      ..++.||+||||||  +.|..|++++...  ..+.++...... ...+++|+|||+|.+|+|+|..+++.|.+|+++++.
T Consensus       133 ~~~~~~d~lviATG--s~p~~p~~~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~  207 (461)
T PRK05249        133 VETLTADKIVIATG--SRPYRPPDVDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR  207 (461)
T ss_pred             eEEEEcCEEEEcCC--CCCCCCCCCCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            34689999999999  8999887766432  123333332222 234689999999999999999999999999999999


Q ss_pred             CCcCccchh--------hhcc-CCCeEEcCceeEEecC--C-cEEEeCCCEEeeceEEEccCcccCCcCC--C-------
Q 044575          238 LNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G-RVTFVDGCWVTADTILYCTGYSYSFPFL--D-------  296 (454)
Q Consensus       238 ~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~-~v~~~dG~~i~~D~vI~atG~~~~~~~l--~-------  296 (454)
                      +.+.+.+++        .+.+ .++++.+..|+++..+  + .+++.+|+++++|.||+|+|++|+.+.+  .       
T Consensus       208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~  287 (461)
T PRK05249        208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEAD  287 (461)
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEec
Confidence            887554332        2222 3578888889988632  2 3556788899999999999999998754  2       


Q ss_pred             CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 ~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +.|.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       288 ~~G~i~vd~~~~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~  336 (461)
T PRK05249        288 SRGQLKVNENYQ----------TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEA  336 (461)
T ss_pred             CCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence            345566665544          4569999999988543 45789999999999999863

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=1.3e-33  Score=284.37  Aligned_cols=291  Identities=19%  Similarity=0.260  Sum_probs=198.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccc-cccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSV-YASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|.|++.+ .... ...++...+.  +.+.   .. 
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~--~g~~---~~-   75 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPG--YGFD---VT-   75 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHh--cCCC---CC-
Confidence            4589999999999999999999999999999985 89999999999998721 1111 1111110000  0110   00 


Q ss_pred             CCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                           . .-....++.++           +.+...+.++.  +..+ ++..++              ..+|++ ++.   
T Consensus        76 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~--------------~~~v~~-~g~---  128 (450)
T PRK06116         76 -----E-NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD--------------AHTVEV-NGE---  128 (450)
T ss_pred             -----C-CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--------------CCEEEE-CCE---
Confidence                 0 00112222222           22333334544  3333 344443              334555 322   


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                        ++.||+||||||  +.|+.|++||.+.    ..++....... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus       129 --~~~~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  199 (450)
T PRK06116        129 --RYTADHILIATG--GRPSIPDIPGAEY----GITSDGFFALE-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG  199 (450)
T ss_pred             --EEEeCEEEEecC--CCCCCCCCCCcce----eEchhHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence              689999999999  8999999998753    23333222221 23589999999999999999999999999999998


Q ss_pred             CCcCccchh--------hhcc-CCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCCC--------
Q 044575          238 LNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFLD--------  296 (454)
Q Consensus       238 ~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~--------  296 (454)
                      +.+.+.+.+        .+.+ .++++.++.|.++..+  +  .+.+.+|+++++|.||+|+|++|+.+.+.        
T Consensus       200 ~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~  279 (450)
T PRK06116        200 DAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKL  279 (450)
T ss_pred             CCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceE
Confidence            876443322        2322 3578888899998643  2  35667898999999999999999988532        


Q ss_pred             -CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCCC
Q 044575          297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                       ++|.+.+|++.+          ++.|++|++||+... ...+.|..||+.+|.++.|..
T Consensus       280 ~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  329 (450)
T PRK06116        280 NEKGYIIVDEYQN----------TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK  329 (450)
T ss_pred             CCCCcEecCCCCC----------cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence             345555655443          457999999999854 345799999999999998853

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=5.1e-33  Score=280.97  Aligned_cols=300  Identities=18%  Similarity=0.228  Sum_probs=201.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-ccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|+|++.+. +..........+. ...++.       
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~-~~g~~~-------   76 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPF-DDGLSA-------   76 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccc-cCCccc-------
Confidence            589999999999999999999999999999985 799999999999987221 1110000001110 001100       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhC-------CCc--cE-EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFG-------LRE--MI-RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE  160 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~-------~~~--~i-~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (454)
                        ..+ -++..++.++.++....+.       +..  .+ ....+|..++..            .|+|++.+++   ..+
T Consensus        77 --~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~------------~~~V~~~~g~---~~~  138 (468)
T PRK14694         77 --QAP-VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDER------------TLTVTLNDGG---EQT  138 (468)
T ss_pred             --CCC-ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCC------------EEEEEecCCC---eEE
Confidence              000 1234555555554433321       100  11 223355555432            7888886542   236


Q ss_pred             EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +.||+||||||  +.|+.|++||++...  .+++...... ...+++++|||+|++|+|+|..|++.+.+|+++.+. ++
T Consensus       139 ~~~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~  212 (468)
T PRK14694        139 VHFDRAFIGTG--ARPAEPPVPGLAETP--YLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RV  212 (468)
T ss_pred             EECCEEEEeCC--CCCCCCCCCCCCCCc--eEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CC
Confidence            89999999999  899999999986532  3333322111 123689999999999999999999999999999875 33


Q ss_pred             Ccc----c----hhhhcc-CCCeEEcCceeEEecCC-cEEE-eCCCEEeeceEEEccCcccCCcCCC--------CCCce
Q 044575          241 SEG----L----SKVISK-HNNLHLHPQIDCLREDG-RVTF-VDGCWVTADTILYCTGYSYSFPFLD--------TKGIV  301 (454)
Q Consensus       241 ~~~----~----~~~l~~-~~~i~~~~~v~~v~~~~-~v~~-~dG~~i~~D~vI~atG~~~~~~~l~--------~~g~i  301 (454)
                      .+.    +    .+.+.+ .++++.+..++++..++ .+.+ .++.++++|.||+|+|.+|+.+++.        ++|.+
T Consensus       213 l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i  292 (468)
T PRK14694        213 LSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI  292 (468)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeE
Confidence            222    2    222322 35788888899887543 2222 2455799999999999999988753        23456


Q ss_pred             eeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+|++..          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       293 ~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~  336 (468)
T PRK14694        293 RIDEHLQ----------TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD  336 (468)
T ss_pred             eeCCCcc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence            6665544          4579999999998654 44789999999999998763

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=2e-33  Score=281.91  Aligned_cols=289  Identities=18%  Similarity=0.249  Sum_probs=195.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc--ccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS--VYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|.|+|.+...  .+...+ ..       ..+.++. 
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~-------~~~g~~~-   71 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMH-DA-------ADYGFYQ-   71 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHh-HH-------hhcCccc-
Confidence            589999999999999999999999999999994 69999999999998722111  111111 00       0111110 


Q ss_pred             CCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                         ....-....++.++           +....++.++.  +..++.+.    .+           ..+|.+. +.    
T Consensus        72 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~----~~-----------~~~v~v~-~~----  126 (450)
T TIGR01421        72 ---NLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF----TK-----------DGTVEVN-GR----  126 (450)
T ss_pred             ---CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE----cc-----------CCEEEEC-CE----
Confidence               00001122333333           22333333444  44444321    11           2235442 21    


Q ss_pred             EEEEeCEEEEccCCCCCCCCC-CCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          159 VEEVFDAVVVATGHYSYPRLP-SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p-~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                       .+.||+||||||  +.|+.| ++||.+..    ..+..+..... .+++|+|||+|.+|+|+|..+++.|++||+++|.
T Consensus       127 -~~~~d~vIiAtG--s~p~~p~~i~g~~~~----~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~  198 (450)
T TIGR01421       127 -DYTAPHILIATG--GKPSFPENIPGAELG----TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH  198 (450)
T ss_pred             -EEEeCEEEEecC--CCCCCCCCCCCCcee----EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence             689999999999  899999 89987531    22222222211 3589999999999999999999999999999999


Q ss_pred             CCcCccchhh--------hc-cCCCeEEcCceeEEecC--C--cEEEeCC-CEEeeceEEEccCcccCCcCCC-------
Q 044575          238 LNISEGLSKV--------IS-KHNNLHLHPQIDCLRED--G--RVTFVDG-CWVTADTILYCTGYSYSFPFLD-------  296 (454)
Q Consensus       238 ~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~--~--~v~~~dG-~~i~~D~vI~atG~~~~~~~l~-------  296 (454)
                      +++.+.+++.        +. ..++++.+..|+++..+  +  .+++++| +.+++|.||+|+|++|++++|.       
T Consensus       199 ~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~  278 (450)
T TIGR01421       199 ERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIK  278 (450)
T ss_pred             CCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcE
Confidence            8775544322        22 23578888889988643  2  3667778 5689999999999999988642       


Q ss_pred             --CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                        ++|.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|.
T Consensus       279 ~~~~G~i~vd~~~~----------T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~  328 (450)
T TIGR01421       279 LNEKGQIIVDEYQN----------TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG  328 (450)
T ss_pred             ECCCCcEEeCCCCc----------CCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence              234555555443          4579999999988654 4589999999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=4.5e-34  Score=284.85  Aligned_cols=345  Identities=18%  Similarity=0.223  Sum_probs=225.8

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      +++++|||||||+||+.+|+.|.+.+.+|+|||++++.                  .|..+....               
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~------------------~~~~~l~~~---------------   54 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM------------------LFTPLLPQT---------------   54 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc------------------chhhhHHHh---------------
Confidence            34679999999999999999998778899999997742                  111110000               


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee--cC---CCeEEEEEeC
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE--KK---ADKVVEEVFD  164 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~--~~---~~~~~~~~~d  164 (454)
                          .......+++...+...++.++..   ....+|++|+....            +|++..  ..   .+...++.||
T Consensus        55 ----~~g~~~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~~------------~v~~~~~~~~~~~~~~g~~i~yD  115 (424)
T PTZ00318         55 ----TTGTLEFRSICEPVRPALAKLPNR---YLRAVVYDVDFEEK------------RVKCGVVSKSNNANVNTFSVPYD  115 (424)
T ss_pred             ----cccCCChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCCC------------EEEEecccccccccCCceEecCC
Confidence                000111244555555555555543   45679999987632            344411  10   0112368999


Q ss_pred             EEEEccCCCCCCCCCCCCCcCCcc--ceeE-EeecCC-----------CC-----CCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575          165 AVVVATGHYSYPRLPSIKGMDKWK--RKQM-HSHIYR-----------VP-----EPFRNEVVVVVGNSLSGQDISMELV  225 (454)
Q Consensus       165 ~vViAtG~~~~p~~p~i~G~~~~~--~~~~-~~~~~~-----------~~-----~~~~~k~vvVVG~G~sg~e~A~~l~  225 (454)
                      +||||||  +.|..|.+||..+..  ...+ +....+           .+     ...+.++|+|||+|++|+|+|.+|+
T Consensus       116 ~LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~  193 (424)
T PTZ00318        116 KLVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELA  193 (424)
T ss_pred             EEEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHH
Confidence            9999999  899999999975421  0000 000000           00     0112358999999999999999998


Q ss_pred             hh--------------cCeEEEecccCCcCccchhh--------hcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575          226 EV--------------AKEVHLSAKSLNISEGLSKV--------ISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTI  282 (454)
Q Consensus       226 ~~--------------~~~V~l~~r~~~~~~~~~~~--------l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v  282 (454)
                      +.              +.+|+++++.+.+.+.+.+.        +.+ .++++.+..|+++.++ .|+++||+++++|.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-~v~~~~g~~i~~d~v  272 (424)
T PTZ00318        194 DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-EVVLKDGEVIPTGLV  272 (424)
T ss_pred             HHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-EEEECCCCEEEccEE
Confidence            63              57899999988775544332        222 3578889999999766 588999999999999


Q ss_pred             EEccCcccCCcCC-------CCCCceeeCCCCcccccCcccCCCCCCCceEecccccc------cchhHHHHHHHHHHHH
Q 044575          283 LYCTGYSYSFPFL-------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL------IGFPFFESQAKWIAQL  349 (454)
Q Consensus       283 I~atG~~~~~~~l-------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~------~~~~~a~~qa~~~a~~  349 (454)
                      |+|+|.+|+ +++       +++|.|.||++++.         ++.|++|++||+...      ...+.|..||+++|++
T Consensus       273 i~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~---------~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~n  342 (424)
T PTZ00318        273 VWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRV---------KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKE  342 (424)
T ss_pred             EEccCCCCc-chhhhcCCcccCCCcEEeCCCccc---------CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHH
Confidence            999999998 443       23567777776542         346999999999853      2346899999999988


Q ss_pred             HcC----CC-CCCCHH---HHHHHHHHHHhhhhhcCCCCCcccccccHHHHHHHHH-HcCCCCchHHHHHHHHHHhhCCc
Q 044575          350 LSG----KR-TLPSWD---QMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYAD-QIGFPHLEEWRKGLCISALVNSD  420 (454)
Q Consensus       350 i~g----~~-~lp~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~-~~g~~~~~~~~~~l~~~~~~~~~  420 (454)
                      |.+    +. ..|+..   .++..++...+....        -.+...++.++++| .+++..++.|++++.  ++++|.
T Consensus       343 i~~~l~g~~~~~~~~~~~~g~~~~lG~~~av~~~--------~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~--~~~~w~  412 (424)
T PTZ00318        343 FNNELKGKPMSKPFVYRSLGSLAYLGNYSAIVQL--------GAFDLSGFKALLFWRSAYLTILGSWRSKLY--VLVNWA  412 (424)
T ss_pred             HHHHhcCCCCCCCCeecCCceEEEecCCceEEEc--------CCceEecHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence            754    32 233321   111111111000000        00124588899998 556677889999999  999999


Q ss_pred             cccccccCC
Q 044575          421 ANLETYRDS  429 (454)
Q Consensus       421 ~~~~~~r~~  429 (454)
                      +++++.|+.
T Consensus       413 ~~~~~~~~~  421 (424)
T PTZ00318        413 GTAIFGRDI  421 (424)
T ss_pred             HHHhcCCcc
Confidence            988888864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.8e-33  Score=280.77  Aligned_cols=298  Identities=19%  Similarity=0.199  Sum_probs=196.2

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-c-ccccccceecCCccccccCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-H-SSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      +.++||+||||||||++||..|++.|.+|+|||+.+.+||+|.+.+|.|++.+ . ...+..++. .......+..    
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~-~~~~g~~~~~----   76 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKA-LAEHGIVFGE----   76 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhh-hhhcCcccCC----
Confidence            34599999999999999999999999999999998889999999999998721 1 111111110 0000000000    


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFC-----------QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                              ......++.++.+...           +..++.  +.. .++..++.   .         ...|...++   
T Consensus        77 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~-g~a~~~~~---~---------~v~v~~~~g---  130 (471)
T PRK06467         77 --------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVN-GLGKFTGG---N---------TLEVTGEDG---  130 (471)
T ss_pred             --------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEccC---C---------EEEEecCCC---
Confidence                    0122344444443332           333443  322 23333221   1         333433222   


Q ss_pred             eEEEEEeCEEEEccCCCCCCC-CCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          157 KVVEEVFDAVVVATGHYSYPR-LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~~p~-~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                      ...++.||+||||||  +.|. .|.+++...   .++.+.+..... ..+++++|||+|++|+|+|..+++.|.+||+++
T Consensus       131 ~~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~  204 (471)
T PRK06467        131 KTTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVE  204 (471)
T ss_pred             ceEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence            234789999999999  8887 444554321   123232222221 235899999999999999999999999999999


Q ss_pred             ccCCcCccchh--------hhccCCCeEEcCceeEEecC--C-cEEEeCC----CEEeeceEEEccCcccCCcCCC----
Q 044575          236 KSLNISEGLSK--------VISKHNNLHLHPQIDCLRED--G-RVTFVDG----CWVTADTILYCTGYSYSFPFLD----  296 (454)
Q Consensus       236 r~~~~~~~~~~--------~l~~~~~i~~~~~v~~v~~~--~-~v~~~dG----~~i~~D~vI~atG~~~~~~~l~----  296 (454)
                      +.+++.+.+++        .+.+..+++++..|+++..+  + .+.+.++    +++++|.||+|+|++|+.+++.    
T Consensus       205 ~~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~  284 (471)
T PRK06467        205 MFDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKA  284 (471)
T ss_pred             cCCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhc
Confidence            99887554432        23233678888889888633  2 3444443    3589999999999999988642    


Q ss_pred             -----CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 -----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                           ++|.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       285 gl~~~~~G~I~Vd~~~~----------t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~  338 (471)
T PRK06467        285 GVEVDERGFIRVDKQCR----------TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKK  338 (471)
T ss_pred             CceECCCCcEeeCCCcc----------cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCC
Confidence                 345566666554          4579999999997543 45899999999999998853

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=4.5e-33  Score=279.27  Aligned_cols=296  Identities=20%  Similarity=0.222  Sum_probs=197.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-cc-ccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+||||||+|.+||..  +.|.+|+|||+ +.+||+|.+.+|+|+|.+. .. .+...+. .+.  ++..     .  
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~--~g~~-----~--   68 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIRE-AAR--LGVD-----A--   68 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHH-HHh--CCcc-----C--
Confidence            799999999999998876  46999999998 5799999999999998221 11 1111111 010  0000     0  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCC-ccEE----eCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLR-EMIR----FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~-~~i~----~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                        . ..-....++.++.+...+++.-. ....    .+..+..=.     ..+.+    ..+|++.++.     ++.||+
T Consensus        69 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-----a~~~~----~~~V~v~~g~-----~~~~d~  131 (451)
T PRK07846         69 --E-LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-----ARFIG----PKTLRTGDGE-----EITADQ  131 (451)
T ss_pred             --C-CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-----EEEec----CCEEEECCCC-----EEEeCE
Confidence              0 00124566666665555543111 0000    111111100     00000    4457765543     689999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS  245 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~  245 (454)
                      ||||||  +.|+.|++||.+..  ....+.+.... ...+++++|||+|++|+|+|..+++.|.+|+++.+.+.+.+.++
T Consensus       132 lViATG--s~p~~p~i~g~~~~--~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d  206 (451)
T PRK07846        132 VVIAAG--SRPVIPPVIADSGV--RYHTSDTIMRL-PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLD  206 (451)
T ss_pred             EEEcCC--CCCCCCCCCCcCCc--cEEchHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccC
Confidence            999999  89999999986532  11222221111 12458999999999999999999999999999999887754332


Q ss_pred             h--------hhccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC---------CCCceeeCC
Q 044575          246 K--------VISKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD---------TKGIVVVDD  305 (454)
Q Consensus       246 ~--------~l~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~v~~  305 (454)
                      +        .+....+++++..+++++.++   .+.+.+|+++++|.||+|+|++|+.+++.         ++|.+.+|+
T Consensus       207 ~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~  286 (451)
T PRK07846        207 DDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE  286 (451)
T ss_pred             HHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC
Confidence            2        223345678888898886443   35667888999999999999999998853         335555665


Q ss_pred             CCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                      +.+          ++.|++|++||+...+. .+.|..||++++.++.|.
T Consensus       287 ~~~----------Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  325 (451)
T PRK07846        287 YQR----------TSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP  325 (451)
T ss_pred             Ccc----------cCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence            544          56799999999987543 479999999999999875

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.1e-32  Score=278.52  Aligned_cols=294  Identities=16%  Similarity=0.152  Sum_probs=197.2

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc-c-ccccceecCCccccccCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS-S-VYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      |+.++||+||||||||++||..|++.|++|+|||+. .+||+|.+.+|+|+|.+.. . .+...+. ..  .+   +++.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~--~~---g~~~   74 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARR-AA--EY---GVSV   74 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHH-HH--hc---Cccc
Confidence            345699999999999999999999999999999985 7999999999999872211 1 1111110 00  00   1110


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHH-----------Hh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           87 VLKKGRDVRRFPGHKELWLYLKDFCQ-----------RF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                      +      ...-....++.++.++..+           +. ++.  +..++.+. +   +           ..+|++. + 
T Consensus        75 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~---~-----------~~~v~v~-~-  129 (463)
T PRK06370         75 G------GPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E---S-----------PNTVRVG-G-  129 (463)
T ss_pred             C------ccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c---c-----------CCEEEEC-c-
Confidence            0      0001233444444433322           22 333  33443321 1   1           2345542 2 


Q ss_pred             CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575          155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS  234 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~  234 (454)
                          .++.||+||||||  +.|+.|++||.+...  .+++....... ..+++|+|||+|.+|+|+|..+++.|.+|+++
T Consensus       130 ----~~~~~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli  200 (463)
T PRK06370        130 ----ETLRAKRIFINTG--ARAAIPPIPGLDEVG--YLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVI  200 (463)
T ss_pred             ----EEEEeCEEEEcCC--CCCCCCCCCCCCcCc--eEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence                1689999999999  899999999976522  23333322221 24689999999999999999999999999999


Q ss_pred             cccCCcCccch--------hhhcc-CCCeEEcCceeEEecCC---cEEEe--C-CCEEeeceEEEccCcccCCcCC--C-
Q 044575          235 AKSLNISEGLS--------KVISK-HNNLHLHPQIDCLREDG---RVTFV--D-GCWVTADTILYCTGYSYSFPFL--D-  296 (454)
Q Consensus       235 ~r~~~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~~~---~v~~~--d-G~~i~~D~vI~atG~~~~~~~l--~-  296 (454)
                      ++.+.+.+.+.        +.+.+ .++++.+..|.++..++   .+.+.  + ++++++|.||+|+|++|+.+.|  . 
T Consensus       201 ~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~  280 (463)
T PRK06370        201 ERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEA  280 (463)
T ss_pred             EcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchh
Confidence            99887754332        22222 35788888999987542   23332  2 4478999999999999998743  2 


Q ss_pred             ------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          297 ------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       297 ------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                            ++|.+.+|++.+          ++.|++|++||+...+. ...|..||+.+|+++.|.
T Consensus       281 ~g~~~~~~G~i~vd~~l~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~  334 (463)
T PRK06370        281 AGVETDARGYIKVDDQLR----------TTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG  334 (463)
T ss_pred             hCceECCCCcEeECcCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence                  345566666544          45799999999986544 368999999999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=3.6e-32  Score=262.17  Aligned_cols=282  Identities=17%  Similarity=0.217  Sum_probs=202.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+.+||+|||||||||+||..|++.|+++++||+. ..||.+.....                        +.++|    
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~------------------------~~~~~----   54 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE------------------------VENWP----   54 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce------------------------ECCCC----
Confidence            35689999999999999999999999999999964 67887753210                        00111    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         ..+...+..++.+++.++++.++..  +.++ +|.+|+....          .|+++... .     .+.||+||||
T Consensus        55 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~~----------~~~v~~~~-~-----~~~~d~vilA  112 (321)
T PRK10262         55 ---GDPNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQNR----------PFRLTGDS-G-----EYTCDALIIA  112 (321)
T ss_pred             ---CCCCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecCC----------eEEEEecC-C-----EEEECEEEEC
Confidence               1122345678899999999988765  5554 5777776432          67776432 1     5789999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc--ch--
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG--LS--  245 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~--~~--  245 (454)
                      ||  +.|+.|++||.+.+.+..+|...+.......+++|+|||+|.+|+|+|..|++.+++|+++.|.+.+...  +.  
T Consensus       113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~  190 (321)
T PRK10262        113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR  190 (321)
T ss_pred             CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence            99  8899999999877777778877776666678999999999999999999999999999999998765321  22  


Q ss_pred             --hhhccC-CCeEEcCceeEEecCC----cEEEeCC------CEEeeceEEEccCcccCCcCCC-----CCCceeeCCCC
Q 044575          246 --KVISKH-NNLHLHPQIDCLREDG----RVTFVDG------CWVTADTILYCTGYSYSFPFLD-----TKGIVVVDDDR  307 (454)
Q Consensus       246 --~~l~~~-~~i~~~~~v~~v~~~~----~v~~~dG------~~i~~D~vI~atG~~~~~~~l~-----~~g~i~v~~~~  307 (454)
                        +.+.+. ++++.+..++++.+++    .|++.++      +++++|.||+++|++|+..++.     ++|.+.+|+..
T Consensus       191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~  270 (321)
T PRK10262        191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI  270 (321)
T ss_pred             HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCC
Confidence              222233 4677888899997653    3666543      3688999999999999987643     23556666522


Q ss_pred             cccccCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHH
Q 044575          308 VGPLYEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQL  349 (454)
Q Consensus       308 ~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~  349 (454)
                      .    .. +..++.|++|++||+....  ....|..++..+|..
T Consensus       271 ~----~~-~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~  309 (321)
T PRK10262        271 H----GN-ATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD  309 (321)
T ss_pred             c----cc-ccccCCCCEEECeeccCCCcceEEEEehhHHHHHHH
Confidence            1    00 1124679999999998532  223455555555543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.4e-32  Score=276.36  Aligned_cols=296  Identities=20%  Similarity=0.196  Sum_probs=198.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-cc-ccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+||||||||++||..|++.|.+|+|||+.. +||+|.+.+|.|++.+. .. .+...+.        +..+.+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~--------~~~~g~~~   73 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARH--------SEDFGIKA   73 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHH--------HHhcCccc
Confidence            35899999999999999999999999999999976 99999999999987211 11 1111111        01111100


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFC-----------QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                           ........++.+|.++..           ++.++.  +..+ ++..++..            .++|...++  + 
T Consensus        74 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~~------------~~~v~~~~~--~-  130 (462)
T PRK06416         74 -----ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVDPN------------TVRVMTEDG--E-  130 (462)
T ss_pred             -----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEccCC------------EEEEecCCC--c-
Confidence                 011234566666644433           333443  3333 34333221            444443221  1 


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                       .++.||+||||||  +.|..|  ||.+.....+.++...... ...+++++|||+|++|+|+|..+++.|.+|+++++.
T Consensus       131 -~~~~~d~lViAtG--s~p~~~--pg~~~~~~~v~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~  204 (462)
T PRK06416        131 -QTYTAKNIILATG--SRPREL--PGIEIDGRVIWTSDEALNL-DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEAL  204 (462)
T ss_pred             -EEEEeCEEEEeCC--CCCCCC--CCCCCCCCeEEcchHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence             3689999999999  788654  5654322222233322221 124589999999999999999999999999999998


Q ss_pred             CCcCccchh--------hhc-cCCCeEEcCceeEEecCC---cEEEeCC---CEEeeceEEEccCcccCCcCCC--C---
Q 044575          238 LNISEGLSK--------VIS-KHNNLHLHPQIDCLREDG---RVTFVDG---CWVTADTILYCTGYSYSFPFLD--T---  297 (454)
Q Consensus       238 ~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~~---~v~~~dG---~~i~~D~vI~atG~~~~~~~l~--~---  297 (454)
                      +.+.+.+.+        .+. ..++++.+..|+++..++   .+.+.+|   +++++|.||+|+|++|+.+++.  .   
T Consensus       205 ~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl  284 (462)
T PRK06416        205 PRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGV  284 (462)
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCC
Confidence            887554332        222 235788888999987542   2445566   6789999999999999988752  2   


Q ss_pred             ---CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          298 ---KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       298 ---~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                         +|.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       285 ~~~~g~i~vd~~~~----------t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~  335 (462)
T PRK06416        285 KTDRGFIEVDEQLR----------TNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP  335 (462)
T ss_pred             eecCCEEeECCCCc----------cCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence               34455555443          4579999999998643 45789999999999999864

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.6e-32  Score=276.22  Aligned_cols=308  Identities=19%  Similarity=0.205  Sum_probs=198.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeC--------CCCCcccccCCCCCCCC-cccc-ccccceecCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQN--------HDVGGQWLYDPNTDQTE-VHSS-VYASLRLTSPREIM   79 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~--------~~~GG~w~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~   79 (454)
                      ..+||+||||||||..||..+++. |.+|+|||+.        ..+||+|.+.+|+|+|. ++.. .+...+.. ..  +
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~-~~--~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRES-AG--F   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHh-hc--c
Confidence            358999999999999999999997 8999999984        57999999999999982 2221 11111110 00  0


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec---C
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG--LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK---K  154 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~---~  154 (454)
                      ++..   .     ....-....++.++.+...++..  ....+.-...|.-+.-.   +.+.+    ..+|.+...   .
T Consensus        79 gi~~---~-----~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~---a~f~~----~~~v~V~~~~~~~  143 (486)
T TIGR01423        79 GWEF---D-----RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW---GALED----KNVVLVRESADPK  143 (486)
T ss_pred             Ceec---c-----CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE---EEEcc----CCEEEEeeccCCC
Confidence            1000   0     00001233444444444333210  00000000112211111   11111    334555421   1


Q ss_pred             CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhh---cCeE
Q 044575          155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV---AKEV  231 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~---~~~V  231 (454)
                      +....++.||+||||||  +.|..|++||.+..    ..+....... ..+++++|||+|++|+|+|..++.+   |.+|
T Consensus       144 ~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~~----~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~V  216 (486)
T TIGR01423       144 SAVKERLQAEHILLATG--SWPQMLGIPGIEHC----ISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKV  216 (486)
T ss_pred             CCcceEEECCEEEEecC--CCCCCCCCCChhhe----echhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeE
Confidence            11134789999999999  89999999997541    1111111111 2468999999999999999887765   8999


Q ss_pred             EEecccCCcCccchh--------hhc-cCCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCCC--
Q 044575          232 HLSAKSLNISEGLSK--------VIS-KHNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFLD--  296 (454)
Q Consensus       232 ~l~~r~~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~--  296 (454)
                      +++++.+++.+.+++        .+. ...+++.+..++++..+  +  .+.+.+|+++++|.||+|+|++|+..++.  
T Consensus       217 tli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~  296 (486)
T TIGR01423       217 TLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLD  296 (486)
T ss_pred             EEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCch
Confidence            999999887554433        232 23578888889988632  2  46677888999999999999999988643  


Q ss_pred             -------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          297 -------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       297 -------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                             ++|.+.+|+..+          ++.|++|++||+...+. .+.|..||+.++.++.|.
T Consensus       297 ~~gl~~~~~G~I~Vd~~l~----------Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~  351 (486)
T TIGR01423       297 KVGVELTKKGAIQVDEFSR----------TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN  351 (486)
T ss_pred             hhCceECCCCCEecCCCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence                   345566666544          45799999999986543 489999999999999875

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=1.5e-32  Score=279.03  Aligned_cols=302  Identities=16%  Similarity=0.195  Sum_probs=195.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-ccccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..+||+|||||+||++||..+++.|.+|+|||++ .+||+|.+.+|+|+|.+. .........+...  +++...     
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~--~Gi~~~-----  118 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRH--YGFDTQ-----  118 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHh--cCCCcc-----
Confidence            3689999999999999999999999999999985 799999999999998322 2211111011111  111000     


Q ss_pred             CCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeE-EEE-----E---EEcCCCccccCCcCCcEEEE
Q 044575           90 KGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTR-VEY-----V---GMLDCGELIIGNDLIKWVVK  149 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~-V~~-----v---~~~~~~~~~~~~~~~~~~v~  149 (454)
                         .   -.....+.+.           +.+..++.++.  +..+.. ..+     |   +..+......+ +. ..+|.
T Consensus       119 ---~---~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~-~~-~~~v~  188 (561)
T PTZ00058        119 ---F---SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESD-DD-EVTIV  188 (561)
T ss_pred             ---C---ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccc-cc-cceee
Confidence               0   0111222222           22333334443  322221 111     0   00000000000 00 22221


Q ss_pred             ------EeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHH
Q 044575          150 ------SKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISME  223 (454)
Q Consensus       150 ------~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~  223 (454)
                            ..++     .++.||+||||||  +.|..|++||.+.    .+.+..+....  .+++|+|||+|.+|+|+|..
T Consensus       189 ~~~~~~~~~g-----~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~  255 (561)
T PTZ00058        189 SAGVSQLDDG-----QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELINV  255 (561)
T ss_pred             eccceecCCC-----cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHH
Confidence                  1122     2689999999999  8999999999642    34444433222  26899999999999999999


Q ss_pred             HhhhcCeEEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecCC--c--EEEeCC-CEEeeceEEEccCcc
Q 044575          224 LVEVAKEVHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG--R--VTFVDG-CWVTADTILYCTGYS  289 (454)
Q Consensus       224 l~~~~~~V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~--~--v~~~dG-~~i~~D~vI~atG~~  289 (454)
                      +++.|++|+++++.+++.+.+++        .+.+ .++++.+..+.++.+++  .  +.+.++ +++++|.|++|+|++
T Consensus       256 l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        256 VNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             HHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCC
Confidence            99999999999998877554432        2222 35788888899887532  2  334454 468999999999999


Q ss_pred             cCCcCCC--------CCCceeeCCCCcccccCcccCCCCCCCceEeccccc-----------------------------
Q 044575          290 YSFPFLD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK-----------------------------  332 (454)
Q Consensus       290 ~~~~~l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~-----------------------------  332 (454)
                      |++.+|.        ++|.|.+|++++          ++.|++|++||+..                             
T Consensus       336 Pn~~~L~l~~~~~~~~~G~I~VDe~lq----------Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  405 (561)
T PTZ00058        336 PNTEDLNLKALNIKTPKGYIKVDDNQR----------TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTS  405 (561)
T ss_pred             CCccccCccccceecCCCeEEECcCCc----------cCCCCEEEeEeccCccccccccccccccccccccccccccccc
Confidence            9988764        245566666554          56799999999986                             


Q ss_pred             -----cc-chhHHHHHHHHHHHHHcCC
Q 044575          333 -----LI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       333 -----~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                           .. ..+.|..||+++|.++.|.
T Consensus       406 ~~~~~~~~la~~A~~~g~~aa~ni~g~  432 (561)
T PTZ00058        406 GESYYNVQLTPVAINAGRLLADRLFGP  432 (561)
T ss_pred             cccccCcCchHHHHHHHHHHHHHHhCC
Confidence                 22 2368999999999999885

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=1.5e-31  Score=273.00  Aligned_cols=277  Identities=19%  Similarity=0.217  Sum_probs=211.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+||||||||++||.+|++.|++++||++  .+||.|.....          .+              ++      
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~----------~~--------------~~------  257 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMG----------IE--------------NF------  257 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCc----------cc--------------cc------
Confidence            368999999999999999999999999999986  48998862110          00              00      


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        ....+..+.++.+++.+.++++++.  ++++++|.+|+..++          .|.|.+.++.     ++.||+||+||
T Consensus       258 --~~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~~----------~~~V~~~~g~-----~i~a~~vViAt  318 (517)
T PRK15317        258 --ISVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAAG----------LIEVELANGA-----VLKAKTVILAT  318 (517)
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCC----------eEEEEECCCC-----EEEcCEEEECC
Confidence              0011345688999999999999987  888999999987542          7888876554     68999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI  248 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l  248 (454)
                      |  +.|+.|++||.+.+.+..+|.....+...+++|+|+|||+|++|+|+|..|+..+++|+++.+.+.+..  .+.+.+
T Consensus       319 G--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l  396 (517)
T PRK15317        319 G--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKL  396 (517)
T ss_pred             C--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHH
Confidence            9  788889999987777777777655555556899999999999999999999999999999999877632  233334


Q ss_pred             cc--CCCeEEcCceeEEecCC----cEEEeC---CC--EEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccc
Q 044575          249 SK--HNNLHLHPQIDCLREDG----RVTFVD---GC--WVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPL  311 (454)
Q Consensus       249 ~~--~~~i~~~~~v~~v~~~~----~v~~~d---G~--~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~  311 (454)
                      .+  .++++.+..++++.+++    .+.+.+   |+  ++++|.|++|+|++|+++++.      ++|.+.+|+..+   
T Consensus       397 ~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~---  473 (517)
T PRK15317        397 RSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGA---  473 (517)
T ss_pred             hcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCC---
Confidence            32  45788888899987662    255543   43  488999999999999988865      234555554433   


Q ss_pred             cCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHH
Q 044575          312 YEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLL  350 (454)
Q Consensus       312 ~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i  350 (454)
                             ++.|++|++||+...+  ....|..++..+|..+
T Consensus       474 -------Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~  507 (517)
T PRK15317        474 -------TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSA  507 (517)
T ss_pred             -------CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHH
Confidence                   4579999999998643  2457777777777554

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.9e-31  Score=269.59  Aligned_cols=303  Identities=17%  Similarity=0.184  Sum_probs=194.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-c-cccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-S-SVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+||||||||++||..|++.|.+|+|||++ .+||+|.+.+|.|++.+. . ..+..+......  +...       
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~--~gi~-------   73 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKT--FGIS-------   73 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHh--cCCC-------
Confidence            489999999999999999999999999999984 799999999999987222 1 112221111110  0000       


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHh--CCCccEEe-CeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRF--GLREMIRF-NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~--~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                          .........+....+...++.  ++.  ..+ ...|..++...   .+.+ .. .+.|...++   ...++.||+|
T Consensus        74 ----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~g~~---~~~~-~~-~v~v~~~~g---~~~~~~~d~l  139 (466)
T PRK07818         74 ----GEVTFDYGAAFDRSRKVAEGRVKGVH--FLMKKNKITEIHGYG---TFTD-AN-TLEVDLNDG---GTETVTFDNA  139 (466)
T ss_pred             ----cCcccCHHHHHHHHHHHHHHHHHHHH--HHHHhCCCEEEEEEE---EEcC-CC-EEEEEecCC---CeeEEEcCEE
Confidence                001123334444433332221  110  001 11333333210   0000 00 334443222   2346899999


Q ss_pred             EEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh
Q 044575          167 VVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK  246 (454)
Q Consensus       167 ViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~  246 (454)
                      |||||  +.|..|  ||.+. .+.++.+..... ....+++|+|||+|.+|+|+|..+++.+.+|+++++.+++.+.+++
T Consensus       140 ViATG--s~p~~~--pg~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~  213 (466)
T PRK07818        140 IIATG--SSTRLL--PGTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDA  213 (466)
T ss_pred             EEeCC--CCCCCC--CCCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCH
Confidence            99999  888764  56432 222333322111 1224689999999999999999999999999999998877554332


Q ss_pred             --------hhc-cCCCeEEcCceeEEecCC---cEEEe--CCC--EEeeceEEEccCcccCCcCCC---------CCCce
Q 044575          247 --------VIS-KHNNLHLHPQIDCLREDG---RVTFV--DGC--WVTADTILYCTGYSYSFPFLD---------TKGIV  301 (454)
Q Consensus       247 --------~l~-~~~~i~~~~~v~~v~~~~---~v~~~--dG~--~i~~D~vI~atG~~~~~~~l~---------~~g~i  301 (454)
                              .+. ..++++.++.|+++..++   .+.+.  +|+  ++++|.||+|+|++|+.+.+.         ++|.+
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i  293 (466)
T PRK07818        214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAI  293 (466)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcE
Confidence                    222 235788899999997543   24454  674  688999999999999988532         34556


Q ss_pred             eeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCCC
Q 044575          302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+|++.+          ++.|++|++||+... ...+.|..||+.+|.++.|..
T Consensus       294 ~vd~~~~----------Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~  337 (466)
T PRK07818        294 AIDDYMR----------TNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE  337 (466)
T ss_pred             eeCCCcc----------cCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence            6665544          457999999999854 345799999999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=8.9e-32  Score=278.66  Aligned_cols=302  Identities=19%  Similarity=0.221  Sum_probs=196.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-ccccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..+||+||||||||++||..|++.|.+|+|||++ .+||+|.+.+|.|++.+. +..........+     +. +.++. 
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~-----~~-~g~~~-  168 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESP-----FD-GGIAA-  168 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhccc-----cc-CCccC-
Confidence            3689999999999999999999999999999996 899999999999987321 111111111111     00 01100 


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhC-------CCc--cE-EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFG-------LRE--MI-RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~-------~~~--~i-~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                         ..+ -...+.+.++.++...++.       +..  .+ .+..++..++.   .         .+.|...++   ...
T Consensus       169 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~---------~~~v~~~~g---~~~  229 (561)
T PRK13748        169 ---TVP-TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD---Q---------TLIVRLNDG---GER  229 (561)
T ss_pred             ---CCC-ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC---C---------EEEEEeCCC---ceE
Confidence               001 1234555555444333221       000  01 11223333321   1         566655433   234


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++.||+||||||  +.|.+|++||.+...  ..++..... ....+++++|||+|++|+|+|..+++.|++|+++.|...
T Consensus       230 ~~~~d~lviAtG--s~p~~p~i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  304 (561)
T PRK13748        230 VVAFDRCLIATG--ASPAVPPIPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTL  304 (561)
T ss_pred             EEEcCEEEEcCC--CCCCCCCCCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            689999999999  899999999976521  122221111 123468999999999999999999999999999998543


Q ss_pred             c---Cccch----hhhcc-CCCeEEcCceeEEecCC-cEEE-eCCCEEeeceEEEccCcccCCcCCC---------CCCc
Q 044575          240 I---SEGLS----KVISK-HNNLHLHPQIDCLREDG-RVTF-VDGCWVTADTILYCTGYSYSFPFLD---------TKGI  300 (454)
Q Consensus       240 ~---~~~~~----~~l~~-~~~i~~~~~v~~v~~~~-~v~~-~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~  300 (454)
                      +   ++.+.    +.+.+ .++++.+..++++..++ .+.+ .++.++++|.||+|+|++||..++.         ++|.
T Consensus       305 l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~  384 (561)
T PRK13748        305 FFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGA  384 (561)
T ss_pred             ccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCC
Confidence            2   12222    22322 35788888898886432 2322 2344799999999999999987642         3345


Q ss_pred             eeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       385 i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  429 (561)
T PRK13748        385 IVIDQGMR----------TSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD  429 (561)
T ss_pred             EeECCCcc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCC
Confidence            66665544          4679999999998654 34789999999999998753

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.3e-31  Score=271.07  Aligned_cols=304  Identities=17%  Similarity=0.173  Sum_probs=193.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc-ccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS-VYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..+||+|||||+||+++|..|++.|.+|+|||+.+.+||+|.+.+|.|++.+... .+.......+  .+   +++.   
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~--~~---g~~~---   86 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNP--FD---GVEA---   86 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcc--cc---Cccc---
Confidence            3589999999999999999999999999999998899999999999998732221 1111111111  01   1110   


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhC---CCccEEeCeEEEEE----EEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFG---LREMIRFNTRVEYV----GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV  162 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (454)
                         ..+. .....+.........++.   ....+..+..|.-+    ...+..         .+.|...++   ...++.
T Consensus        87 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~---------~v~v~~~~g---~~~~~~  150 (479)
T PRK14727         87 ---VAPS-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGN---------TLVVRLHDG---GERVLA  150 (479)
T ss_pred             ---CCCc-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCC---------EEEEEeCCC---ceEEEE
Confidence               0000 122333322222222110   00000111111111    112211         566665443   234689


Q ss_pred             eCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      ||+||||||  +.|..|++||.+...  ..++...... ...+++|+|||+|++|+|+|..+++.|++|+++.+. .+.+
T Consensus       151 ~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~  224 (479)
T PRK14727        151 ADRCLIATG--STPTIPPIPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLF  224 (479)
T ss_pred             eCEEEEecC--CCCCCCCCCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCC
Confidence            999999999  899999999975421  2222111111 123589999999999999999999999999999885 3322


Q ss_pred             cch--------hhhcc-CCCeEEcCceeEEecCC-cEEE-eCCCEEeeceEEEccCcccCCcCCC---------CCCcee
Q 044575          243 GLS--------KVISK-HNNLHLHPQIDCLREDG-RVTF-VDGCWVTADTILYCTGYSYSFPFLD---------TKGIVV  302 (454)
Q Consensus       243 ~~~--------~~l~~-~~~i~~~~~v~~v~~~~-~v~~-~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~  302 (454)
                      .++        +.+.+ .++++.+..++++..++ .+.+ .++.++++|.||+|+|+.|+..+|.         ++|.+.
T Consensus       225 ~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~  304 (479)
T PRK14727        225 REDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIV  304 (479)
T ss_pred             cchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEE
Confidence            222        22222 35777888888886332 2322 2344689999999999999988642         345566


Q ss_pred             eCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          303 VDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       303 v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +|+..+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       305 Vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~  347 (479)
T PRK14727        305 VNPAME----------TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGN  347 (479)
T ss_pred             ECCCee----------cCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCC
Confidence            666544          4579999999998654 35789999999999998863

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.1e-31  Score=271.63  Aligned_cols=306  Identities=18%  Similarity=0.167  Sum_probs=197.8

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      |...+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|+|++.+..  ..+..++....   +...   .
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~---~g~~---~   73 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASP---FGIS---V   73 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHh---cCcc---C
Confidence            445799999999999999999999999999999985 7999999999999873211  12222221100   0000   0


Q ss_pred             CCCCCCCCCCCCCHHHHH-------HHHH----HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           87 VLKKGRDVRRFPGHKELW-------LYLK----DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-------~yl~----~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                      .       .......++.       +++.    ...++.++.  +. ..++..++....     +.....++|.+.++  
T Consensus        74 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~-~g~a~~i~~~~~-----~~~~~~~~v~~~~g--  136 (472)
T PRK05976         74 S-------GPALDFAKVQERKDGIVDRLTKGVAALLKKGKID--VF-HGIGRILGPSIF-----SPMPGTVSVETETG--  136 (472)
T ss_pred             C-------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEeCCCCC-----cCCceEEEEEeCCC--
Confidence            0       0001222232       2232    223333544  33 345556654300     00000455555433  


Q ss_pred             CeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          156 DKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                       ...++.||+||||||  +.|+.|  ||........+++.+..... ..+++|+|||+|++|+|+|..|++.+.+|++++
T Consensus       137 -~~~~~~~d~lViATG--s~p~~~--p~~~~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~  210 (472)
T PRK05976        137 -ENEMIIPENLLIATG--SRPVEL--PGLPFDGEYVISSDEALSLE-TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVE  210 (472)
T ss_pred             -ceEEEEcCEEEEeCC--CCCCCC--CCCCCCCceEEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence             124789999999999  788654  33322111233433332222 235899999999999999999999999999999


Q ss_pred             ccCCcCccch--------hhhcc-CCCeEEcCceeEEec--CCcE---EEeCCC--EEeeceEEEccCcccCCcCCC---
Q 044575          236 KSLNISEGLS--------KVISK-HNNLHLHPQIDCLRE--DGRV---TFVDGC--WVTADTILYCTGYSYSFPFLD---  296 (454)
Q Consensus       236 r~~~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~--~~~v---~~~dG~--~i~~D~vI~atG~~~~~~~l~---  296 (454)
                      +.+.+.+.+.        +.+.+ .++++.++.|+++..  ++.+   .+.+|+  ++++|.||+|+|.+|+.+.+.   
T Consensus       211 ~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~  290 (472)
T PRK05976        211 AADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLEN  290 (472)
T ss_pred             ecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchh
Confidence            9887754432        22333 357888888999863  3322   334674  588999999999999987643   


Q ss_pred             -----CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 -----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                           ++|.+.+|+...          +..|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       291 ~~~~~~~g~i~Vd~~l~----------ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~  344 (472)
T PRK05976        291 TDIDVEGGFIQIDDFCQ----------TKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK  344 (472)
T ss_pred             cCceecCCEEEECCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence                 234455555443          3469999999998543 45789999999999998864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.8e-32  Score=274.09  Aligned_cols=298  Identities=20%  Similarity=0.222  Sum_probs=197.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCC-ccccc-cccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSSV-YASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+||||||||++||+.|++.|.+|+|||+ +.+||+|.+.+|.|++. ++... +...+ +       +..+.... 
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~-~-------~~~~gi~~-   72 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAK-H-------AEEFGIHA-   72 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHH-H-------HHhcCCCc-
Confidence            48999999999999999999999999999999 78999999999998862 11111 11111 0       11111111 


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccE-E--e-CeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMI-R--F-NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i-~--~-~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                          .....+..++.+++++..+++...  + .  + ...|.-+....   .+.+    .+++.+ ++.     ++.||+
T Consensus        73 ----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~g~~---~~~~----~~~v~v-~~~-----~~~~d~  133 (460)
T PRK06292         73 ----DGPKIDFKKVMARVRRERDRFVGG--VVEGLEKKPKIDKIKGTA---RFVD----PNTVEV-NGE-----RIEAKN  133 (460)
T ss_pred             ----CCCccCHHHHHHHHHHHHHHHhcc--hHHHHHhhCCCEEEEEEE---EEcc----CCEEEE-CcE-----EEEeCE
Confidence                113456778888887777655322  1 0  0 00111111000   0000    234444 222     689999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccce-eEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRK-QMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL  244 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~-~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~  244 (454)
                      ||||||  +.  .|.+||.....+. .+++..... ....+++++|||+|.+|+|+|..+++.|.+|+++++.+.+.+.+
T Consensus       134 lIiATG--s~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~  208 (460)
T PRK06292        134 IVIATG--SR--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE  208 (460)
T ss_pred             EEEeCC--CC--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch
Confidence            999999  55  4556676432222 222222211 12356899999999999999999999999999999988775433


Q ss_pred             hh--------hhccCCCeEEcCceeEEecCC--cEEE--eCC--CEEeeceEEEccCcccCCcCCC---------CCCce
Q 044575          245 SK--------VISKHNNLHLHPQIDCLREDG--RVTF--VDG--CWVTADTILYCTGYSYSFPFLD---------TKGIV  301 (454)
Q Consensus       245 ~~--------~l~~~~~i~~~~~v~~v~~~~--~v~~--~dG--~~i~~D~vI~atG~~~~~~~l~---------~~g~i  301 (454)
                      ++        .+.+..+++.+..|.+++.++  .+++  .+|  +++++|.||+|+|++|+.++|.         ++|.+
T Consensus       209 d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i  288 (460)
T PRK06292        209 DPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRP  288 (460)
T ss_pred             hHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcE
Confidence            22        232236778888999987543  3543  344  4688999999999999998532         34556


Q ss_pred             eeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                      .+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|.
T Consensus       289 ~vd~~~~----------ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~  331 (460)
T PRK06292        289 VVDEHTQ----------TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD  331 (460)
T ss_pred             eECCCcc----------cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence            6665544          4579999999998654 3479999999999999884

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3e-32  Score=275.48  Aligned_cols=296  Identities=19%  Similarity=0.218  Sum_probs=195.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-cc-ccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+||||||||++||..+++.|.+|+|||+.. +||+|.+.+|.|++.+. .. .+.....  +.  +.........  
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~--~~--~g~~~~~~~~--   73 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARK--PP--FGGLAATVAV--   73 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhc--cC--cccccCCCcc--
Confidence            689999999999999999999999999999865 99999999999987221 11 1111111  00  1100000000  


Q ss_pred             CCCCC-CCCCHHHHHHHHH-----HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575           91 GRDVR-RFPGHKELWLYLK-----DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD  164 (454)
Q Consensus        91 ~~~~~-~~~~~~~~~~yl~-----~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d  164 (454)
                        +.. .....+++..++.     ...+++++.  +..+ ++..++              ..+|.+.++    ...+.||
T Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~~--------------~~~v~v~~g----~~~~~~~  130 (463)
T TIGR02053        74 --DFGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFKD--------------PKTVKVDLG----REVRGAK  130 (463)
T ss_pred             --CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEcc--------------CCEEEEcCC----eEEEEeC
Confidence              000 0111223333322     333444544  3222 232221              344655432    1257899


Q ss_pred             EEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc
Q 044575          165 AVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL  244 (454)
Q Consensus       165 ~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~  244 (454)
                      +||||||  +.|+.|++||.+...  ++++....... ..+++++|||+|.+|+|+|..|++.|.+|+++++.+++.+.+
T Consensus       131 ~lIiATG--s~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~  205 (463)
T TIGR02053       131 RFLIATG--ARPAIPPIPGLKEAG--YLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE  205 (463)
T ss_pred             EEEEcCC--CCCCCCCCCCcccCc--eECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc
Confidence            9999999  899999999986542  33333322222 135899999999999999999999999999999988775443


Q ss_pred             hh--------hhcc-CCCeEEcCceeEEecCC---cEEEeC---CCEEeeceEEEccCcccCCcCC--C-------CCCc
Q 044575          245 SK--------VISK-HNNLHLHPQIDCLREDG---RVTFVD---GCWVTADTILYCTGYSYSFPFL--D-------TKGI  300 (454)
Q Consensus       245 ~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~d---G~~i~~D~vI~atG~~~~~~~l--~-------~~g~  300 (454)
                      ++        .+.+ .++++.++.|+++..++   .+.+.+   ++++++|.||+|+|++|+.+.|  .       ++|.
T Consensus       206 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~  285 (463)
T TIGR02053       206 EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGG  285 (463)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCc
Confidence            22        2222 35788888899887543   234432   3578999999999999998833  2       3455


Q ss_pred             eeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                      +.+|+..+          ++.|++|++||+...+. .+.|..||+.+|.++.+.
T Consensus       286 i~vd~~~~----------Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~  329 (463)
T TIGR02053       286 ILVDETLR----------TSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG  329 (463)
T ss_pred             EeECCCcc----------CCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence            66665444          45799999999987543 479999999999999886

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=5.3e-32  Score=272.01  Aligned_cols=288  Identities=16%  Similarity=0.206  Sum_probs=196.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+||||||||++||..|++.|.+|+|||+.+ .+||+|.+.+|.|++.+....    ..          ...+.   
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~----~~----------~~~~~---   65 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA----QQ----------HTDFV---   65 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh----cc----------CCCHH---
Confidence            4899999999999999999999999999999976 489999999998876211100    00          00000   


Q ss_pred             CCCCCCCCCHHHHHHHHHH-----HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           91 GRDVRRFPGHKELWLYLKD-----FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~-----~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                          ......+++.++++.     ..+..++.  +. ..++..++..            .+.|...++    ..++.||+
T Consensus        66 ----~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~-~g~~~~i~~~------------~~~v~~~~g----~~~~~~d~  122 (441)
T PRK08010         66 ----RAIQRKNEVVNFLRNKNFHNLADMPNID--VI-DGQAEFINNH------------SLRVHRPEG----NLEIHGEK  122 (441)
T ss_pred             ----HHHHHHHHHHHHHHHhHHHHHhhcCCcE--EE-EEEEEEecCC------------EEEEEeCCC----eEEEEeCE
Confidence                000111233344432     11111332  22 2344444321            556655432    12589999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS  245 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~  245 (454)
                      ||||||  +.|..|++||++...+ ++++......+ ..+++|+|||+|.+|+|+|..+++.+.+|+++++.+.+.+.+.
T Consensus       123 lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~  198 (441)
T PRK08010        123 IFINTG--AQTVVPPIPGITTTPG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRED  198 (441)
T ss_pred             EEEcCC--CcCCCCCCCCccCCCC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcC
Confidence            999999  8999999999865443 33333332222 2457999999999999999999999999999999887755433


Q ss_pred             h--------hhcc-CCCeEEcCceeEEecCC-cEEEe-CCCEEeeceEEEccCcccCCcCCC---------CCCceeeCC
Q 044575          246 K--------VISK-HNNLHLHPQIDCLREDG-RVTFV-DGCWVTADTILYCTGYSYSFPFLD---------TKGIVVVDD  305 (454)
Q Consensus       246 ~--------~l~~-~~~i~~~~~v~~v~~~~-~v~~~-dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~v~~  305 (454)
                      +        .+.+ .++++.+..|+++..++ .+.+. ++.++++|.|++|+|.+|+.+++.         ++|.+.+|+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~  278 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDK  278 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECC
Confidence            2        2333 35788888899987543 34332 334688999999999999987532         345566666


Q ss_pred             CCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                      +.+          ++.|++|++||+...+. .+.|..|++.++.++.|+
T Consensus       279 ~~~----------Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~  317 (441)
T PRK08010        279 YLH----------TTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE  317 (441)
T ss_pred             Ccc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence            544          45799999999997643 478999999999999885

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.2e-32  Score=280.09  Aligned_cols=291  Identities=20%  Similarity=0.244  Sum_probs=194.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEee---------CCCCCcccccCCCCCCCCccc-c-ccccceecCCccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ---------NHDVGGQWLYDPNTDQTEVHS-S-VYASLRLTSPREIMG   80 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~---------~~~~GG~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~   80 (454)
                      ++||+||||||||+.||..+++.|.+|+|||+         ...+||+|.+.+|+|+|.+.. . .+..++. ..     
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~-~~-----  152 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE-SR-----  152 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh-hh-----
Confidence            58999999999999999999999999999996         256999999999999983221 1 1111111 00     


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575           81 YTDFPFVLKKGRDVRRFPGHKELW-----------LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK  149 (454)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~  149 (454)
                        .+.+..    ....-.....+.           .++....++.++.  +. ..+++.++.              .+|.
T Consensus       153 --~~g~~~----~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i-~G~a~~vd~--------------~~V~  209 (558)
T PLN02546        153 --GFGWKY----ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVT--LI-EGRGKIVDP--------------HTVD  209 (558)
T ss_pred             --hcCccc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EE-EeEEEEccC--------------CEEE
Confidence              000000    000001222222           3333333333443  22 223333332              2344


Q ss_pred             EeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC
Q 044575          150 SKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK  229 (454)
Q Consensus       150 ~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~  229 (454)
                      + ++.     ++.||+||||||  +.|..|++||.+.    .+++...... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus       210 v-~G~-----~~~~D~LVIATG--s~p~~P~IpG~~~----v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~  276 (558)
T PLN02546        210 V-DGK-----LYTARNILIAVG--GRPFIPDIPGIEH----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKS  276 (558)
T ss_pred             E-CCE-----EEECCEEEEeCC--CCCCCCCCCChhh----ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            4 222     689999999999  9999999999753    2222221111 1246899999999999999999999999


Q ss_pred             eEEEecccCCcCccchhh--------hc-cCCCeEEcCceeEEec--CCcEE--EeCCCEEeeceEEEccCcccCCcCCC
Q 044575          230 EVHLSAKSLNISEGLSKV--------IS-KHNNLHLHPQIDCLRE--DGRVT--FVDGCWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       230 ~V~l~~r~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~--~~~v~--~~dG~~i~~D~vI~atG~~~~~~~l~  296 (454)
                      +|+++.+.+.+.+.+++.        +. ..++++.+..+.++..  ++.+.  +.+++.+.+|.||+|+|++|+..+|.
T Consensus       277 ~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~  356 (558)
T PLN02546        277 DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLG  356 (558)
T ss_pred             eEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCC
Confidence            999999988765544332        22 2357888888888863  33333  33444445899999999999988632


Q ss_pred             ---------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 ---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 ---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                               ++|.|.+|++.+          ++.|+||++||+.... ..+.|..||+.+|.++.|..
T Consensus       357 le~~gl~~d~~G~I~VD~~l~----------Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~  414 (558)
T PLN02546        357 LEEVGVKMDKNGAIEVDEYSR----------TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNE  414 (558)
T ss_pred             hhhcCCcCCCCCcEeECCCce----------eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence                     345666766554          4579999999998654 45899999999999999853

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=2.7e-31  Score=272.71  Aligned_cols=277  Identities=18%  Similarity=0.264  Sum_probs=204.4

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ...+||+||||||||++||..|++.|++|+|||++ .+||.+......                        .++|    
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i------------------------~~~p----   52 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEV------------------------VNYP----   52 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecccc------------------------ccCC----
Confidence            34589999999999999999999999999999995 688887632110                        0011    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                          .....+..++.+++.+.++++++.  + .+++|.+++..+.          .+.|.+.++      .+.+|+||||
T Consensus        53 ----g~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~~----------~~~V~~~~g------~~~a~~lVlA  109 (555)
T TIGR03143        53 ----GILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDGD----------IKTIKTARG------DYKTLAVLIA  109 (555)
T ss_pred             ----CCcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecCC----------EEEEEecCC------EEEEeEEEEC
Confidence                011234578889999999998876  4 4778988886432          466766432      5789999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhh
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKV  247 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~  247 (454)
                      ||  +.|+.|++||.+.+.+..++.+.......+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+.+.  ..+.+.
T Consensus       110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~  187 (555)
T TIGR03143       110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK  187 (555)
T ss_pred             CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence            99  88999999998766666666665555556688999999999999999999999999999999988652  222222


Q ss_pred             h-c-cCCCeEEcCceeEEecCCcE---EE---eCCCEE----eece----EEEccCcccCCcCCC------CCCceeeCC
Q 044575          248 I-S-KHNNLHLHPQIDCLREDGRV---TF---VDGCWV----TADT----ILYCTGYSYSFPFLD------TKGIVVVDD  305 (454)
Q Consensus       248 l-~-~~~~i~~~~~v~~v~~~~~v---~~---~dG~~i----~~D~----vI~atG~~~~~~~l~------~~g~i~v~~  305 (454)
                      + . ..++++.+..|+++..++.+   .+   .+|+..    ++|.    ||+|+|++|+..++.      ++|.+.+|+
T Consensus       188 ~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~  267 (555)
T TIGR03143       188 VKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNE  267 (555)
T ss_pred             HHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCC
Confidence            2 2 24578889999999765432   22   357653    2666    999999999988754      345566665


Q ss_pred             CCcccccCcccCCCCCCCceEecccccc--cchhHHHHHHHHHHHHH
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLL  350 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i  350 (454)
                      +..          ++.|++|++||+...  .....|..||+.+|.++
T Consensus       268 ~~~----------Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i  304 (555)
T TIGR03143       268 DME----------TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA  304 (555)
T ss_pred             ccc----------cCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence            544          457999999998632  23457888888888665

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=2.4e-31  Score=271.12  Aligned_cols=279  Identities=18%  Similarity=0.220  Sum_probs=208.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+||||||||++||.+|++.|++|+||+.  .+||.+.....          +.           .+..       
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~----------~~-----------~~~~-------  260 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG----------IE-----------NLIS-------  260 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC----------cc-----------cccc-------
Confidence            468999999999999999999999999999985  58988753210          00           0000       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                          ..+....++.+++.+.++++++.  ++++++|.+|+..++          .|.+++.++.     .+.||+||+||
T Consensus       261 ----~~~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~~----------~~~v~~~~g~-----~i~~d~lIlAt  319 (515)
T TIGR03140       261 ----VPYTTGSQLAANLEEHIKQYPID--LMENQRAKKIETEDG----------LIVVTLESGE-----VLKAKSVIVAT  319 (515)
T ss_pred             ----cCCCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecCC----------eEEEEECCCC-----EEEeCEEEECC
Confidence                11134578889999999888887  888999999986532          6778776554     68999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI  248 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l  248 (454)
                      |  +.|+.|++||...+.+...+.........+.+++|+|||+|++|+|+|..|+..+++|+++.+.+.+..  .+.+.+
T Consensus       320 G--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l  397 (515)
T TIGR03140       320 G--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKL  397 (515)
T ss_pred             C--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHH
Confidence            9  778889999976555555555444444445789999999999999999999999999999998877632  123334


Q ss_pred             cc--CCCeEEcCceeEEecCC----cEEEeCC-----CEEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccc
Q 044575          249 SK--HNNLHLHPQIDCLREDG----RVTFVDG-----CWVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPL  311 (454)
Q Consensus       249 ~~--~~~i~~~~~v~~v~~~~----~v~~~dG-----~~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~  311 (454)
                      .+  .++++.+..++++.+++    .|++.++     +++++|.||+|+|++|+++++.      ++|.+.+|++.+   
T Consensus       398 ~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~---  474 (515)
T TIGR03140       398 KSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGR---  474 (515)
T ss_pred             hcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCC---
Confidence            32  46788888999987552    3666543     3588999999999999988764      335566665544   


Q ss_pred             cCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHcC
Q 044575          312 YEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       312 ~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~g  352 (454)
                             ++.|++|++||+...+  ....|..||..+|..+..
T Consensus       475 -------Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       475 -------TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD  510 (515)
T ss_pred             -------CCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence                   4579999999998643  346788888888776543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=6.6e-31  Score=263.87  Aligned_cols=282  Identities=17%  Similarity=0.202  Sum_probs=192.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC-CCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-VGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~-~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+||||||||++||..|++.|.+|+|||+++. +||+|.+.+|.|++.+......              .       
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------~-------   61 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------N-------   61 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------C-------
Confidence            48999999999999999999999999999999864 7999999999887621110000              0       


Q ss_pred             CCCCCCCCCHHHHHHHHH-----------HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           91 GRDVRRFPGHKELWLYLK-----------DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                             ....++.++.+           +...+.++.  +..+ ++..++              ..+|.+..++  ...
T Consensus        62 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~~--------------~~~v~v~~~~--~~~  115 (438)
T PRK07251         62 -------LSFEQVMATKNTVTSRLRGKNYAMLAGSGVD--LYDA-EAHFVS--------------NKVIEVQAGD--EKI  115 (438)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--------------CCEEEEeeCC--CcE
Confidence                   01122222222           222333333  2222 222211              2345554321  123


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++.||+||||||  +.|+.|++||.+... .++++....... ..+++|+|||+|.+|+|+|..+++.+.+|+++++.+.
T Consensus       116 ~~~~d~vViATG--s~~~~p~i~G~~~~~-~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~  191 (438)
T PRK07251        116 ELTAETIVINTG--AVSNVLPIPGLADSK-HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             EEEcCEEEEeCC--CCCCCCCCCCcCCCC-cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            689999999999  889999999975432 233333322221 2468999999999999999999999999999999887


Q ss_pred             cCccchh--------hhcc-CCCeEEcCceeEEecCC-cE-EEeCCCEEeeceEEEccCcccCCcCCC---------CCC
Q 044575          240 ISEGLSK--------VISK-HNNLHLHPQIDCLREDG-RV-TFVDGCWVTADTILYCTGYSYSFPFLD---------TKG  299 (454)
Q Consensus       240 ~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~-~v-~~~dG~~i~~D~vI~atG~~~~~~~l~---------~~g  299 (454)
                      +.+...+        .+.+ ..+++.+..|+++..++ .+ ...+|+++++|.||+|+|++|+.+.+.         ++|
T Consensus       192 ~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g  271 (438)
T PRK07251        192 ILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERG  271 (438)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCC
Confidence            7543322        1222 35777888899887543 23 345678899999999999999987643         234


Q ss_pred             ceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575          300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+.+|+..+          ++.|++|++||+...+. .+.+..|++.++.++.|..
T Consensus       272 ~i~vd~~~~----------t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~  317 (438)
T PRK07251        272 AIKVDDYCQ----------TSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDG  317 (438)
T ss_pred             cEEECCCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence            555555443          45799999999986543 4788899999999988753

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.1e-31  Score=266.59  Aligned_cols=304  Identities=19%  Similarity=0.190  Sum_probs=189.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-cccccee-cCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRL-TSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~   88 (454)
                      .+||+||||||||++||..+++.|.+|+|||+++.+||+|.+.+|+|+|.+ ... .|..++. ....  +...      
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~--~gi~------   74 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAH--LGIE------   74 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhh--cCcc------
Confidence            489999999999999999999999999999987889999999999999822 111 1221111 0000  0000      


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                           ...-....++.+.....           .++.++.  +..+ +. ++  .+..         +..|...++   .
T Consensus        75 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~a-~~--~~~~---------~v~v~~~~g---~  131 (466)
T PRK06115         75 -----VKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKG-WG-RL--DGVG---------KVVVKAEDG---S  131 (466)
T ss_pred             -----ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EE-EE--ccCC---------EEEEEcCCC---c
Confidence                 00001122222222222           2222222  1111 11 11  1111         444443332   2


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      ..++.||+||||||  ++|.  .+||.+......+++...... ...+++|+|||+|.+|+|+|..+++.|++|+++++.
T Consensus       132 ~~~~~~d~lVIATG--s~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~  206 (466)
T PRK06115        132 ETQLEAKDIVIATG--SEPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL  206 (466)
T ss_pred             eEEEEeCEEEEeCC--CCCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            34689999999999  7774  356754222223433332221 124689999999999999999999999999999998


Q ss_pred             CCcCccchhh--------hc-cCCCeEEcCceeEEecC--C-cEEEe---CC--CEEeeceEEEccCcccCCcCCC-CCC
Q 044575          238 LNISEGLSKV--------IS-KHNNLHLHPQIDCLRED--G-RVTFV---DG--CWVTADTILYCTGYSYSFPFLD-TKG  299 (454)
Q Consensus       238 ~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~--~-~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~-~~g  299 (454)
                      +++.+.++..        +. ..++++.+..|+++..+  + .+.+.   +|  +++++|.||+|+|++|+...|. +..
T Consensus       207 ~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~  286 (466)
T PRK06115        207 DRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETV  286 (466)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccc
Confidence            8875544322        22 23578888899998743  2 23333   23  4688999999999999988653 111


Q ss_pred             ceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575          300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+.+++.... ...+ . .++.|++|++||+...+. .+.|..||+++|.++.|..
T Consensus       287 g~~~~~~G~~-vd~~-~-~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~  339 (466)
T PRK06115        287 GLETDKRGML-ANDH-H-RTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA  339 (466)
T ss_pred             cceeCCCCEE-ECCC-e-ecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            2233322110 0011 1 156799999999986543 4899999999999998864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=9.2e-32  Score=271.42  Aligned_cols=295  Identities=21%  Similarity=0.232  Sum_probs=190.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-----C---CCCcccccCCCCCCCCccccc--cccceecCCcccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-----H---DVGGQWLYDPNTDQTEVHSSV--YASLRLTSPREIMGY   81 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-----~---~~GG~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   81 (454)
                      .+||+||||||||+.+|..+++.|.+|++||+.     .   .+||+|.+.+|+|+|.+....  +...+ +..  .+++
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~-~~~--~~g~   78 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK-DSR--NYGW   78 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh-hhh--hcCc
Confidence            479999999999999999999999999999973     1   599999999999998322211  11111 000  0111


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           82 TDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-----------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      .   +.      ...-.....+.++.++..+++           ++.   .+..+..-++              ..+|.+
T Consensus        79 ~---~~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~---~i~G~a~f~~--------------~~~v~v  132 (484)
T TIGR01438        79 N---VE------ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN---YENAYAEFVD--------------KHRIKA  132 (484)
T ss_pred             c---cC------CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcC--------------CCEEEE
Confidence            0   00      000123344444444333332           222   1111111111              123444


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE  230 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~  230 (454)
                      .+.+ +...++.||+||||||  +.|+.|++||.+..   .+.+....... ...++++|||+|++|+|+|..+++.|.+
T Consensus       133 ~~~~-g~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~  205 (484)
T TIGR01438       133 TNKK-GKEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLD  205 (484)
T ss_pred             eccC-CCceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHhCCc
Confidence            3221 2233689999999999  89999999997542   12222222111 1347899999999999999999999999


Q ss_pred             EEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecC-C--cEEEeCCC---EEeeceEEEccCcccCCcCC
Q 044575          231 VHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED-G--RVTFVDGC---WVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       231 V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~---~i~~D~vI~atG~~~~~~~l  295 (454)
                      |+++.|. .+.+.+++        .+.+ .++++.+..+.++... +  .|++.+|+   ++++|.||+|+|++||+.+|
T Consensus       206 Vtli~~~-~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l  284 (484)
T TIGR01438       206 VTVMVRS-ILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKL  284 (484)
T ss_pred             EEEEEec-ccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcC
Confidence            9999984 44333322        2322 3477888877777632 2  35666663   78999999999999999875


Q ss_pred             C--C--------CCceeeCCCCcccccCcccCCCCCCCceEeccccc-c-cchhHHHHHHHHHHHHHcCC
Q 044575          296 D--T--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK-L-IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       296 ~--~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~-~-~~~~~a~~qa~~~a~~i~g~  353 (454)
                      .  .        .|.+.+|+..+          ++.|++|++||+.. . ...+.|..||+.+|+++.|.
T Consensus       285 ~l~~~gv~~~~~~G~I~Vd~~~~----------Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~  344 (484)
T TIGR01438       285 NLENVGVKINKKTGKIPADEEEQ----------TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG  344 (484)
T ss_pred             CcccccceecCcCCeEecCCCcc----------cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence            3  1        24455554433          45799999999874 2 34578999999999999874

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=8.6e-32  Score=272.89  Aligned_cols=314  Identities=18%  Similarity=0.181  Sum_probs=202.2

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--------CCCcccccCCCCCCCCcccc--ccccceecCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--------DVGGQWLYDPNTDQTEVHSS--VYASLRLTSPREIM   79 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--------~~GG~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   79 (454)
                      +..+||+||||||||++||..+++.|.+|+|||+..        .+||+|.+.+|.|+|.+...  .+...+....  .+
T Consensus         3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~--~~   80 (499)
T PTZ00052          3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ--MY   80 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh--cC
Confidence            335899999999999999999999999999999631        49999999999998722111  1111110000  01


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                      .+.           ...-....++.++++...++++..  +....++..|+.......+.+    .++|.+.+.+  ...
T Consensus        81 g~~-----------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~~----~~~v~v~~~~--~~~  141 (499)
T PTZ00052         81 GWK-----------TSSSFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLKD----EHTVSYGDNS--QEE  141 (499)
T ss_pred             CCC-----------CCCCcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEcc----CCEEEEeeCC--Cce
Confidence            110           000135577888888877766433  222222222222211110100    3456554321  223


Q ss_pred             EEEeCEEEEccCCCCCCCCCC-CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          160 EEVFDAVVVATGHYSYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+.||+||||||  +.|..|. +||.+..   .+.+....... ..+++++|||+|.+|+|+|..|++.|.+||++.+. 
T Consensus       142 ~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-  214 (499)
T PTZ00052        142 TITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSLS-KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-  214 (499)
T ss_pred             EEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-
Confidence            689999999999  8999884 8887542   12222221111 13479999999999999999999999999999875 


Q ss_pred             CcCccch--------hhhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCCC-CCCceeeCC
Q 044575          239 NISEGLS--------KVISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFLD-TKGIVVVDD  305 (454)
Q Consensus       239 ~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-~~g~i~v~~  305 (454)
                      .+.+.++        +.+.+ .++++.+..+.++... +  .+.+.+|+++++|.||+|+|++||.++|. +...+.+++
T Consensus       215 ~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~  294 (499)
T PTZ00052        215 IPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNK  294 (499)
T ss_pred             cccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECC
Confidence            3333332        22322 3577778777777532 2  46677899999999999999999998864 222344444


Q ss_pred             CCcccccCcccCCCCCCCceEeccccc-c-cchhHHHHHHHHHHHHHcCCC
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRK-L-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~-~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .........   .++.|++|++||+.. . ...+.|..||+.+|.+|.|..
T Consensus       295 ~G~ii~~~~---~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~  342 (499)
T PTZ00052        295 SNKIIAPND---CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQS  342 (499)
T ss_pred             CCCEeeCCC---cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCC
Confidence            322111111   256799999999874 2 345899999999999998753

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.7e-31  Score=267.50  Aligned_cols=280  Identities=18%  Similarity=0.250  Sum_probs=189.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|||||||+||++||+.|++.  +.+|+|||+++.++    |.+|.                          .|+-.  
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~--------------------------lp~~~--   49 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCA--------------------------LPYYI--   49 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCC--------------------------cchhh--
Confidence            3799999999999999999887  57999999987653    11110                          00000  


Q ss_pred             CCCCCCCCCHHHHHHH-HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLY-LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         .......++...+ ...+.++.++.  ++++++|++|+..            ..+|.+.++.++...++.||+||||
T Consensus        50 ---~~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~------------~~~v~~~~~~~~~~~~~~yd~lviA  112 (438)
T PRK13512         50 ---GEVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDE------------RQTVTVLNRKTNEQFEESYDKLILS  112 (438)
T ss_pred             ---cCccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECC------------CCEEEEEECCCCcEEeeecCEEEEC
Confidence               0001111222222 13444556776  7888999999876            3346665543233446789999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEee-cCCC-CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch--
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSH-IYRV-PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS--  245 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~-~~~~-~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~--  245 (454)
                      ||  +.|+.|++++...+....+... ..+. .....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+.+.  
T Consensus       113 tG--s~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~  190 (438)
T PRK13512        113 PG--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDAD  190 (438)
T ss_pred             CC--CCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHH
Confidence            99  8888886543211111000000 0000 0122468999999999999999999999999999999887654332  


Q ss_pred             ------hhhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCCCCcccc
Q 044575          246 ------KVISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPL  311 (454)
Q Consensus       246 ------~~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~  311 (454)
                            +.+.+ .++++.+..|+++++. .|++++|+++++|.|++|+|++|+.+++.       ++|.+.+|++.+   
T Consensus       191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~---  266 (438)
T PRK13512        191 MNQPILDELDKREIPYRLNEEIDAINGN-EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFE---  266 (438)
T ss_pred             HHHHHHHHHHhcCCEEEECCeEEEEeCC-EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcc---
Confidence                  22332 3478888999999754 58888999999999999999999988754       334555555443   


Q ss_pred             cCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          312 YEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       312 ~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                             ++.|++|++||+...           ...+.|..||+.+|+++.|..
T Consensus       267 -------t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~  313 (438)
T PRK13512        267 -------TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND  313 (438)
T ss_pred             -------cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCC
Confidence                   356999999999742           223468899999999999853

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-30  Score=244.48  Aligned_cols=260  Identities=24%  Similarity=0.302  Sum_probs=203.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      +.+||+|||||||||+||.++.+.+.+ ++|+|+ ...||......                     ..-.|++++    
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~---------------------~venypg~~----   55 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT---------------------DVENYPGFP----   55 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce---------------------eecCCCCCc----
Confidence            358999999999999999999999998 555555 55664433211                     111222222    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                            .-.+..++.+-+.+.+..++..  +.. ..|.+++...+          .|+|++.++      ++++++||||
T Consensus        56 ------~~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~~----------~F~v~t~~~------~~~ak~vIiA  110 (305)
T COG0492          56 ------GGILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEGG----------PFKVKTDKG------TYEAKAVIIA  110 (305)
T ss_pred             ------cCCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecCc----------eEEEEECCC------eEEEeEEEEC
Confidence                  2235688889999999988877  433 67777776532          477777654      4899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhh
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKV  247 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~  247 (454)
                      ||  ..++.|.+||..+|.++.+|.+..++. .+++|+|+|||||.||+|-|..|++.+++||+++|++.+..  .+.+.
T Consensus       111 tG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~  187 (305)
T COG0492         111 TG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVER  187 (305)
T ss_pred             cC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHH
Confidence            99  889999888877899999999999998 89999999999999999999999999999999999998844  34444


Q ss_pred             hccC--CCeEEcCceeEEecCC--cEEEeCC--C--EEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccccC
Q 044575          248 ISKH--NNLHLHPQIDCLREDG--RVTFVDG--C--WVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPLYE  313 (454)
Q Consensus       248 l~~~--~~i~~~~~v~~v~~~~--~v~~~dG--~--~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~~~  313 (454)
                      +.+.  +.++.+..|.++.+++  .|.+.+.  +  ++++|-++.++|+.|+..|+.      +.|.+.+|+...     
T Consensus       188 l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~-----  262 (305)
T COG0492         188 LKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEME-----  262 (305)
T ss_pred             HHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcc-----
Confidence            5443  5778889999998753  5778774  3  567999999999999988764      467777777654     


Q ss_pred             cccCCCCCCCceEeccccccc
Q 044575          314 HTFPPSLAPSLSFVGIPRKLI  334 (454)
Q Consensus       314 ~~~~~~~~p~l~~iG~~~~~~  334 (454)
                           ++.|++|++||+....
T Consensus       263 -----TsvpGifAaGDv~~~~  278 (305)
T COG0492         263 -----TSVPGIFAAGDVADKN  278 (305)
T ss_pred             -----cCCCCEEEeEeeccCc
Confidence                 6789999999998543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.98  E-value=5.7e-31  Score=266.40  Aligned_cols=301  Identities=19%  Similarity=0.245  Sum_probs=195.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEee------CCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ------NHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYT   82 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~------~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~   82 (454)
                      ..+||+||||||||++||.++++.|.+|+|||+      ...+||+|.+.+|.|++.+ ... .+..+............
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~   82 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD   82 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence            458999999999999999999999999999998      4679999999999987621 111 11111110000000000


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      ..+            ....++.+.           +..+.+..++.  + ...++..++...+          .++|.+.
T Consensus        83 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~g~~~~~~~~~~----------~~~v~v~  137 (475)
T PRK06327         83 GVK------------IDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--V-LKGRGSFVGKTDA----------GYEIKVT  137 (475)
T ss_pred             CCc------------cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEEEEEEecCCCC----------CCEEEEe
Confidence            000            112222222           22223333443  2 2345555554322          5677775


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeE
Q 044575          152 EKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV  231 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V  231 (454)
                      ..+   ..+++||+||||||  +.|+.|  |+.. +.+..++...........+++|+|||+|.+|+|+|..+++.+.+|
T Consensus       138 ~~~---~~~~~~d~lViATG--s~p~~~--p~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~V  209 (475)
T PRK06327        138 GED---ETVITAKHVIIATG--SEPRHL--PGVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEV  209 (475)
T ss_pred             cCC---CeEEEeCEEEEeCC--CCCCCC--CCCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence            321   12689999999999  788654  3322 222223322211111224689999999999999999999999999


Q ss_pred             EEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecCC---cEEEeCC----CEEeeceEEEccCcccCCcCC
Q 044575          232 HLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG---RVTFVDG----CWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       232 ~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~dG----~~i~~D~vI~atG~~~~~~~l  295 (454)
                      +++++.+.+.+.+++        .+.+ ..+++.++.|+++..++   .+.+.++    +++++|.|++|+|++|+.+++
T Consensus       210 tli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l  289 (475)
T PRK06327        210 TILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL  289 (475)
T ss_pred             EEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC
Confidence            999998877443322        2222 35788888999987542   3455553    468899999999999998854


Q ss_pred             C---------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          296 D---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       296 ~---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .         ++|.+.+|+...          ++.|++|++||+...+ ..+.|..|++.+|.++.|..
T Consensus       290 ~~~~~g~~~~~~G~i~vd~~~~----------Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~  348 (475)
T PRK06327        290 GLEAVGLKLDERGFIPVDDHCR----------TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK  348 (475)
T ss_pred             CcHhhCceeCCCCeEeECCCCc----------cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence            2         334555555443          4569999999998543 45789999999999998864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.98  E-value=9.2e-31  Score=264.93  Aligned_cols=294  Identities=17%  Similarity=0.208  Sum_probs=193.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc--ccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH--SSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+||||||||++||..|++.|.+|+|||+ +.+||+|.+.+|.|++.+.  ...+..++ +..       .+.+..  
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~-~~~-------~~g~~~--   70 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIK-HAK-------DYGIEV--   70 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHH-HHH-------hcCCCC--
Confidence            7999999999999999999999999999999 8899999999999986211  11222222 111       011000  


Q ss_pred             CCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           91 GRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                        . ....+...+.++.+..           .++.++.  +.. .++..++   ..         .+.+...++    ..
T Consensus        71 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~---~~---------~~~v~~~~g----~~  128 (461)
T TIGR01350        71 --E-NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVT--VIK-GEAKFLD---PG---------TVLVTGENG----EE  128 (461)
T ss_pred             --C-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEcc---CC---------EEEEecCCC----cE
Confidence              0 0112334444333332           2333433  222 2233222   11         455554322    13


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCC-CcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIK-GMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~-G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ++.||+||||||  +.|+.|++| +.   .+..+++..........+++|+|||+|.+|+|+|..+++.+.+|+++.+.+
T Consensus       129 ~~~~d~lVlAtG--~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  203 (461)
T TIGR01350       129 TLTAKNIIIATG--SRPRSLPGPFDF---DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD  203 (461)
T ss_pred             EEEeCEEEEcCC--CCCCCCCCCCCC---CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            689999999999  889888776 32   222222222111112245899999999999999999999999999999988


Q ss_pred             CcCccchhh--------hcc-CCCeEEcCceeEEecC-Cc--EEEeCC--CEEeeceEEEccCcccCCc--CCC------
Q 044575          239 NISEGLSKV--------ISK-HNNLHLHPQIDCLRED-GR--VTFVDG--CWVTADTILYCTGYSYSFP--FLD------  296 (454)
Q Consensus       239 ~~~~~~~~~--------l~~-~~~i~~~~~v~~v~~~-~~--v~~~dG--~~i~~D~vI~atG~~~~~~--~l~------  296 (454)
                      .+.+.+...        +.+ ..+++.+..|+++..+ +.  +.+.+|  +++++|.||+|+|+.|+.+  ++.      
T Consensus       204 ~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~  283 (461)
T TIGR01350       204 RILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVEL  283 (461)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceE
Confidence            775443322        222 3578888899988643 23  344567  4789999999999999988  332      


Q ss_pred             -CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                       +.|.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.++.
T Consensus       284 ~~~g~i~vd~~l~----------t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (461)
T TIGR01350       284 DERGRIVVDEYMR----------TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE  333 (461)
T ss_pred             CCCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence             335566665444          3469999999998643 45789999999999998864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.98  E-value=1.1e-30  Score=263.52  Aligned_cols=302  Identities=19%  Similarity=0.215  Sum_probs=197.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|+|||||++|+.+|..+++.|.+|++||++ .+||+|.+.+|+|+|.+ ... .+...+. ...  ++.   ....  
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~--~g~---~~~~--   72 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRR-AAE--LGI---RFID--   72 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHH-HHh--CCc---cccc--
Confidence            58999999999999999999999999999986 59999999999998722 111 1111111 000  000   0000  


Q ss_pred             CCCCCCCCCHHHHHHHH-----------HHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           91 GRDVRRFPGHKELWLYL-----------KDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                        ..........+.+++           .+.++++++.  +. ..++..++...+.       . ...|...++   ...
T Consensus        73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~-~g~~~~~~~~~~~-------~-~v~V~~~~g---~~~  136 (466)
T PRK07845         73 --DGEARVDLPAVNARVKALAAAQSADIRARLEREGVR--VI-AGRGRLIDPGLGP-------H-RVKVTTADG---GEE  136 (466)
T ss_pred             --CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EE-EEEEEEeecccCC-------C-EEEEEeCCC---ceE
Confidence              000011223333333           3333444544  33 3344443311111       0 455544332   223


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++.||+||||||  +.|..|+.++...  ..++++....... ..+++++|||+|.+|+|+|..|++.+.+|+++++.+.
T Consensus       137 ~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~  211 (466)
T PRK07845        137 TLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR  211 (466)
T ss_pred             EEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            689999999999  8888765444321  2234443332222 2358999999999999999999999999999999887


Q ss_pred             cCccchh--------hhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCC--C-------CC
Q 044575          240 ISEGLSK--------VISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFL--D-------TK  298 (454)
Q Consensus       240 ~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l--~-------~~  298 (454)
                      +.+.+..        .+.+ .++++.+..++++..+ +  .+.+.+|+++++|.||+|+|++|+.+.+  .       ++
T Consensus       212 ~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~  291 (466)
T PRK07845        212 VLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPS  291 (466)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCC
Confidence            7554332        2333 3577888888888532 2  3566789999999999999999998753  2       33


Q ss_pred             CceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          299 GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       299 g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.++.++.|..
T Consensus       292 G~i~Vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~  338 (466)
T PRK07845        292 GHITVDRVSR----------TSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEA  338 (466)
T ss_pred             CcEeECCCcc----------cCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCC
Confidence            4555555443          4579999999998654 45899999999999998864

>TIGR03452 mycothione_red mycothione reductase

Probab=99.98  E-value=2.2e-31  Score=267.26  Aligned_cols=290  Identities=18%  Similarity=0.197  Sum_probs=190.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc--ccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS--VYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++||+|||+||+|..||..  ..|.+|++||+ +.+||+|.+.+|+|+|.+...  .+...+. ...  +...     . 
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~--~g~~-----~-   69 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SAR--LGID-----A-   69 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHH-hhc--cCee-----C-
Confidence            5899999999999998654  46999999998 579999999999999832211  1111111 110  0000     0 


Q ss_pred             CCCCCCCCCCHHHHHHHHHH-HHHHh--------------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           90 KGRDVRRFPGHKELWLYLKD-FCQRF--------------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~-~~~~~--------------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                         . ..-....++.++... ..+..              ++.  +..++.+..    +           .++|.+.++.
T Consensus        70 ---~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~----~-----------~~~V~~~~g~  128 (452)
T TIGR03452        70 ---E-IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV----G-----------PRTLRTGDGE  128 (452)
T ss_pred             ---C-CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe----c-----------CCEEEECCCc
Confidence               0 001234555555433 22211              111  111111111    1           5567775443


Q ss_pred             CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575          155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS  234 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~  234 (454)
                           ++.||+||||||  +.|..|++++...  .....+.+..... ..+++++|||+|++|+|+|..+++.|.+|+++
T Consensus       129 -----~~~~d~lIiATG--s~p~~p~~~~~~~--~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli  198 (452)
T TIGR03452       129 -----EITGDQIVIAAG--SRPYIPPAIADSG--VRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTIV  198 (452)
T ss_pred             -----EEEeCEEEEEEC--CCCCCCCCCCCCC--CEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence                 689999999999  8998886433211  1122222211111 13689999999999999999999999999999


Q ss_pred             cccCCcCccchh--------hhccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC-------
Q 044575          235 AKSLNISEGLSK--------VISKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD-------  296 (454)
Q Consensus       235 ~r~~~~~~~~~~--------~l~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------  296 (454)
                      ++.+.+.+.+++        .+....+++++..|+++..++   .+.+.+|+++++|.||+|+|++|+.+++.       
T Consensus       199 ~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~  278 (452)
T TIGR03452       199 NRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVE  278 (452)
T ss_pred             EccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCee
Confidence            998876433322        223345678888899887432   35566888999999999999999998753       


Q ss_pred             --CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575          297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~  354 (454)
                        ++|.+.+|++.+          ++.|++|++||+...+. .+.|..||+.+|.++.|..
T Consensus       279 ~~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~  329 (452)
T TIGR03452       279 VDEDGRIKVDEYGR----------TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPN  329 (452)
T ss_pred             ECCCCcEeeCCCcc----------cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCCC
Confidence              234555555443          56799999999987644 4789999999999998753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=3e-31  Score=239.94  Aligned_cols=306  Identities=21%  Similarity=0.261  Sum_probs=213.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCC-ccccccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..+|.+|||||.+|+++|+..+..|.++.++|..-.+||+|.+.+|.|.+. +..+.|..       .+-.-.+|.|+. 
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~-------~~~da~~yG~~~-   90 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSE-------EMEDAKDYGFPI-   90 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhH-------HhhhhhhcCCcc-
Confidence            369999999999999999999999999999999779999999999999872 22222211       111122344443 


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                         ....-..+..+.+--..|..++ ++.+...-+..|.-|+-.   +.+.+..  .-.|...++.   ...+++++++|
T Consensus        91 ---~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~---a~f~~~~--~v~V~~~d~~---~~~Ytak~iLI  159 (478)
T KOG0405|consen   91 ---NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR---ARFVSPG--EVEVEVNDGT---KIVYTAKHILI  159 (478)
T ss_pred             ---ccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee---EEEcCCC--ceEEEecCCe---eEEEecceEEE
Confidence               1111123344444444444433 222222234444444321   1111111  4455555442   44689999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI  248 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l  248 (454)
                      |||  ++|.+|+|||.+.    .+.|..+.+.+++ .||++|||+|++|+|+|..++.+|.+++++.|.+..+..|++.+
T Consensus       160 AtG--g~p~~PnIpG~E~----gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i  232 (478)
T KOG0405|consen  160 ATG--GRPIIPNIPGAEL----GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMI  232 (478)
T ss_pred             EeC--CccCCCCCCchhh----ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHH
Confidence            999  9999999999865    4455555544444 48999999999999999999999999999999999888777766


Q ss_pred             ccC---------CCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCCC---------CCCceeeCCC
Q 044575          249 SKH---------NNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFLD---------TKGIVVVDDD  306 (454)
Q Consensus       249 ~~~---------~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~v~~~  306 (454)
                      +..         .+++..+.++++...  +  .+..+.|+...+|.++||+|+.|++.-|+         +.|.|.+|++
T Consensus       233 ~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeY  312 (478)
T KOG0405|consen  233 SDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEY  312 (478)
T ss_pred             HHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecc
Confidence            532         367788888877532  2  34455665555999999999999987654         4566777776


Q ss_pred             CcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g  352 (454)
                      ..          ++.|+++++||...-. ..|+|.+.+|-+|.-+.|
T Consensus       313 q~----------Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~  349 (478)
T KOG0405|consen  313 QN----------TNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG  349 (478)
T ss_pred             cc----------CCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence            65          6789999999998644 458999999999987766

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.98  E-value=3.8e-32  Score=244.69  Aligned_cols=194  Identities=42%  Similarity=0.620  Sum_probs=137.1

Q ss_pred             EEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcc---ccccCCCCC---CC
Q 044575           16 CVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPRE---IMGYTDFPF---VL   88 (454)
Q Consensus        16 vIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~   88 (454)
                      +||||||+||++|.+|++.|.+ ++|||+++.+||.|.......            ....|..   .+.+++++.   ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~   68 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYT------------RLHSPSFFSSDFGLPDFESFSFDD   68 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTT------------T-BSSSCCTGGSS--CCCHSCHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCC------------ccccCccccccccCCccccccccc
Confidence            7999999999999999999998 999999999999998532111            1111111   111111111   10


Q ss_pred             C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           89 K-KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        89 ~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                      . .......+++++++.+|++++++++++.  ++++++|++|++.++          .|+|++.++.     ++.+|+||
T Consensus        69 ~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~~----------~w~v~~~~~~-----~~~a~~VV  131 (203)
T PF13738_consen   69 SPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDGD----------GWTVTTRDGR-----TIRADRVV  131 (203)
T ss_dssp             HHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEETT----------TEEEEETTS------EEEEEEEE
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEecc----------EEEEEEEecc-----eeeeeeEE
Confidence            0 0002356789999999999999999998  999999999998854          7999998763     78899999


Q ss_pred             EccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          168 VATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|||.++.|++|.+|| ..+. ..+|+..+..+..+++|+|+|||+|.||+|+|..|++.+++|+++.|++.+
T Consensus       132 lAtG~~~~p~~p~~~g-~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  132 LATGHYSHPRIPDIPG-SAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             E---SSCSB---S-TT-GGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             EeeeccCCCCcccccc-cccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            9999888999999999 2222 788999999999999999999999999999999999999999999998754

...

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.97  E-value=1.1e-30  Score=268.78  Aligned_cols=323  Identities=19%  Similarity=0.159  Sum_probs=201.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-CCCCcccccCCCCCCCCc-cc-cccccceecCCccccccC--CCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-HDVGGQWLYDPNTDQTEV-HS-SVYASLRLTSPREIMGYT--DFPF   86 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-~~~GG~w~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~   86 (454)
                      +|||+|||||+||++||..+++.|.+|+|||+. ..+||+|.+.+|+|+|.+ .. ..+..++...-...++..  .||.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~  195 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN  195 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence            689999999999999999999999999999974 469999999999999821 11 122222211000011111  1110


Q ss_pred             CCCCC------CCCCCCCCHHHHHHHHHHHHHHhCCC--cc-----EEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           87 VLKKG------RDVRRFPGHKELWLYLKDFCQRFGLR--EM-----IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        87 ~~~~~------~~~~~~~~~~~~~~yl~~~~~~~~~~--~~-----i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                      .....      .....-.....+.++.+...+++.-.  ..     +..+.++..+....  +.+.+    ..+|++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a~f~~----~~~v~v~~~  269 (659)
T PTZ00153        196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--GHIVD----KNTIKSEKS  269 (659)
T ss_pred             cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--EEEec----CCeEEEccC
Confidence            00000      00011135566777766666553210  00     11112222332211  11111    223444311


Q ss_pred             CCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEE
Q 044575          154 KADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHL  233 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l  233 (454)
                        +  .++.||+||||||  +.|.+|++++.+..  .++.+.+....+ ..+++|+|||+|.+|+|+|..+++.|++||+
T Consensus       270 --g--~~i~ad~lIIATG--S~P~~P~~~~~~~~--~V~ts~d~~~l~-~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTL  340 (659)
T PTZ00153        270 --G--KEFKVKNIIIATG--STPNIPDNIEVDQK--SVFTSDTAVKLE-GLQNYMGIVGMGIIGLEFMDIYTALGSEVVS  340 (659)
T ss_pred             --C--EEEECCEEEEcCC--CCCCCCCCCCCCCC--cEEehHHhhhhh-hcCCceEEECCCHHHHHHHHHHHhCCCeEEE
Confidence              1  2689999999999  89998876654331  233333322111 2368999999999999999999999999999


Q ss_pred             ecccCCcCccchhh---------hc-cCCCeEEcCceeEEecCC---cEE--EeC-------C--------CEEeeceEE
Q 044575          234 SAKSLNISEGLSKV---------IS-KHNNLHLHPQIDCLREDG---RVT--FVD-------G--------CWVTADTIL  283 (454)
Q Consensus       234 ~~r~~~~~~~~~~~---------l~-~~~~i~~~~~v~~v~~~~---~v~--~~d-------G--------~~i~~D~vI  283 (454)
                      +++.+++.+.++..         +. ..++++.+..|+++..++   .+.  +.+       +        +++++|.||
T Consensus       341 Ie~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~Vl  420 (659)
T PTZ00153        341 FEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCL  420 (659)
T ss_pred             EeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEE
Confidence            99998875544332         22 335788888899887532   133  221       1        268899999


Q ss_pred             EccCcccCCcCCC--------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          284 YCTGYSYSFPFLD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       284 ~atG~~~~~~~l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                      +|||++|+++.|.        ++|.|.||++++.. ..   ..+..|++|++||+...+. .+.|..||+.++++|.|.
T Consensus       421 vAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs-~~---~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~  495 (659)
T PTZ00153        421 VATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVL-RE---DQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK  495 (659)
T ss_pred             EEECcccCCccCCchhcCCcccCCEEeECCCCCcC-CC---CCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence            9999999998753        23667777765521 00   0012589999999986543 489999999999999986

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.97  E-value=5.9e-30  Score=257.90  Aligned_cols=278  Identities=17%  Similarity=0.250  Sum_probs=190.7

Q ss_pred             cEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      +|||||||+||+++|..|++.+  .+|+|||+++.++    +.++.                          .|+.    
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~----~~~~~--------------------------~~~~----   47 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS----FGACG--------------------------LPYF----   47 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce----eecCC--------------------------CceE----
Confidence            6999999999999999999875  5999999987642    11110                          0000    


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                       ....+....++..+..+..++.++.  +.++++|++|+..+            ..|.+.+..++....+.||+||||||
T Consensus        48 -~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~------------~~v~~~~~~~~~~~~~~yd~lviAtG  112 (444)
T PRK09564         48 -VGGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN------------KTITVKNLKTGSIFNDTYDKLMIATG  112 (444)
T ss_pred             -eccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC------------CEEEEEECCCCCEEEecCCEEEECCC
Confidence             0011122234444444555666776  77899999998753            34555442112223345999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-c
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-G  243 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-~  243 (454)
                        +.|+.|++||.+..  .+.+...+.+.       ....+++|+|||+|++|+|+|..+.+.+++|+++.+.+.+.+ .
T Consensus       113 --~~~~~~~i~g~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~  188 (444)
T PRK09564        113 --ARPIIPPIKNINLE--NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDS  188 (444)
T ss_pred             --CCCCCCCCCCcCCC--CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchh
Confidence              89999999987532  12333222111       123568999999999999999999999999999998876533 2


Q ss_pred             ch----h----hhcc-CCCeEEcCceeEEecCCc--EEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCC
Q 044575          244 LS----K----VISK-HNNLHLHPQIDCLREDGR--VTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDD  305 (454)
Q Consensus       244 ~~----~----~l~~-~~~i~~~~~v~~v~~~~~--v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~  305 (454)
                      +.    +    .+.+ ..+++.+..|+++.+++.  ....++.++++|.+|+|+|+.|+.+++.       ++|.+.+|+
T Consensus       189 ~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~  268 (444)
T PRK09564        189 FDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDE  268 (444)
T ss_pred             cCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECC
Confidence            22    2    2222 247888899999875542  2334666899999999999999987654       345566666


Q ss_pred             CCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      ..+          ++.|++|++||+...           +..+.|..||+++|++|.|..
T Consensus       269 ~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~  318 (444)
T PRK09564        269 YGE----------TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH  318 (444)
T ss_pred             Ccc----------cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence            443          346999999999853           234689999999999999864

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=7.8e-30  Score=257.11  Aligned_cols=294  Identities=15%  Similarity=0.159  Sum_probs=191.9

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      +|+||||||||++||..+++.|.+|+|||+. .+||+|.+.+|+|+|.+..  ..+...+.. ..  +   +.+...   
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~-~~--~---g~~~~~---   71 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKA-NH--F---GITLPN---   71 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHH-Hh--c---CccccC---
Confidence            7999999999999999999999999999986 6999999999999883211  111111110 00  0   010000   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-----------hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575           92 RDVRRFPGHKELWLYLKDFCQR-----------FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE  160 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (454)
                        .......+.+..+..+..++           .++.   .+..++..++   ..         ...|...++    ..+
T Consensus        72 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~---~~---------~v~v~~~~~----~~~  130 (458)
T PRK06912         72 --GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET---DH---------RVRVEYGDK----EEV  130 (458)
T ss_pred             --CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc---CC---------EEEEeeCCC----cEE
Confidence              00112334555444443333           1222   1222333232   11         444443221    236


Q ss_pred             EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +.||+||||||  +.|+.|+++|.+..  .++++....... ..+++++|||+|++|+|+|..+.+.+.+|+++++.+.+
T Consensus       131 ~~~d~lviATG--s~p~~~p~~~~~~~--~v~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        131 VDAEQFIIAAG--SEPTELPFAPFDGK--WIINSKHAMSLP-SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             EECCEEEEeCC--CCCCCCCCCCCCCC--eEEcchHHhCcc-ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            89999999999  88887777765421  233333222211 23579999999999999999999999999999998877


Q ss_pred             Cccch--------hhhcc-CCCeEEcCceeEEecCC-cEEEe-CCC--EEeeceEEEccCcccCCcCCC--C------CC
Q 044575          241 SEGLS--------KVISK-HNNLHLHPQIDCLREDG-RVTFV-DGC--WVTADTILYCTGYSYSFPFLD--T------KG  299 (454)
Q Consensus       241 ~~~~~--------~~l~~-~~~i~~~~~v~~v~~~~-~v~~~-dG~--~i~~D~vI~atG~~~~~~~l~--~------~g  299 (454)
                      .+.+.        +.+.+ ..+++.+..|+++..++ .+.+. +|+  ++++|.||+|||++|+.+++.  .      ++
T Consensus       206 l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~  285 (458)
T PRK06912        206 LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNK  285 (458)
T ss_pred             CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCC
Confidence            54432        22332 35788888899987543 34443 443  588999999999999987642  1      11


Q ss_pred             ceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                      .+.+|++.+          ++.|++|++||+...+ ..+.|..|++.+|.++.|.
T Consensus       286 gi~Vd~~~~----------ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~  330 (458)
T PRK06912        286 GISVNEHMQ----------TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE  330 (458)
T ss_pred             CEEeCCCee----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence            244554433          3569999999998643 4578999999999999885

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.97  E-value=7.9e-30  Score=251.18  Aligned_cols=270  Identities=20%  Similarity=0.277  Sum_probs=190.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|||||||+||+++|+.|++.  +.+|+||++++..                  .|...  ..+.   .+         
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------------------~y~~~--~l~~---~~---------   50 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------------------EYNKP--DLSH---VF---------   50 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------------------CcCcC--cCcH---HH---------
Confidence            5899999999999999999886  4689999987632                  11000  0000   00         


Q ss_pred             CCCCCCCCCHHHHHH-HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWL-YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                          ......+++.. ...++++++++.  ++++++|++|+..            .++|++. +.     .+.||+||||
T Consensus        51 ----~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~------------~~~v~~~-~~-----~~~yd~LVlA  106 (377)
T PRK04965         51 ----SQGQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAE------------AQVVKSQ-GN-----QWQYDKLVLA  106 (377)
T ss_pred             ----hCCCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECC------------CCEEEEC-Ce-----EEeCCEEEEC
Confidence                00112234443 255677778877  7889999999875            4456643 22     6899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-  243 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-  243 (454)
                      ||  +.|..|++||.+.    .+......+     .....+++|+|||+|.+|+|+|..|++.+.+|+++++.+.+.+. 
T Consensus       107 TG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~  180 (377)
T PRK04965        107 TG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL  180 (377)
T ss_pred             CC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh
Confidence            99  8899999999754    222211111     11125689999999999999999999999999999998875332 


Q ss_pred             ----c----hhhhccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCCC-----CceeeCCC
Q 044575          244 ----L----SKVISKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDTK-----GIVVVDDD  306 (454)
Q Consensus       244 ----~----~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~-----g~i~v~~~  306 (454)
                          +    .+.+.+. .+++.+..|+++..++   .+.+.+|+++++|.||+|+|++|+.+++...     +.+.+|++
T Consensus       181 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~gi~vd~~  260 (377)
T PRK04965        181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSY  260 (377)
T ss_pred             CCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCCEEECCC
Confidence                1    1223322 4677788899987543   4678899999999999999999997764321     22555654


Q ss_pred             CcccccCcccCCCCCCCceEecccccc-----cchhHHHHHHHHHHHHHcCCC
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKL-----IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~-----~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      ..          ++.|++|++||+...     +.+..|..||+++|++|.|..
T Consensus       261 l~----------ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~  303 (377)
T PRK04965        261 LQ----------TSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN  303 (377)
T ss_pred             cc----------cCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence            43          456999999999743     224567899999999999964

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.97  E-value=1.2e-29  Score=251.35  Aligned_cols=274  Identities=15%  Similarity=0.170  Sum_probs=185.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .++|||||||+||++||..|++.|.  +|+||++++...    |..+                ..++....-   +..  
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~----------------~l~~~~~~~---~~~--   57 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERP----------------PLSKSMLLE---DSP--   57 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCC----------------CCCHHHHCC---CCc--
Confidence            3689999999999999999999876  899999976431    1100                000000000   000  


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         . ..+...       .++..+.++.  ++.++.|..|+..            ..+|.+.++.     ++.||+||||
T Consensus        58 ---~-~~~~~~-------~~~~~~~~i~--~~~g~~V~~id~~------------~~~v~~~~g~-----~~~yd~LViA  107 (396)
T PRK09754         58 ---Q-LQQVLP-------ANWWQENNVH--LHSGVTIKTLGRD------------TRELVLTNGE-----SWHWDQLFIA  107 (396)
T ss_pred             ---c-ccccCC-------HHHHHHCCCE--EEcCCEEEEEECC------------CCEEEECCCC-----EEEcCEEEEc
Confidence               0 000000       1223345666  7778899999875            4456666554     7899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-  243 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-  243 (454)
                      ||  +.|+.|++++...  ..++......+     .....+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.+. 
T Consensus       108 TG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        108 TG--AAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             cC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            99  8887776655322  11221111111     11124689999999999999999999999999999998876322 


Q ss_pred             ----chhh----hc-cCCCeEEcCceeEEecCC--cEEEeCCCEEeeceEEEccCcccCCcCCC-----CCCceeeCCCC
Q 044575          244 ----LSKV----IS-KHNNLHLHPQIDCLREDG--RVTFVDGCWVTADTILYCTGYSYSFPFLD-----TKGIVVVDDDR  307 (454)
Q Consensus       244 ----~~~~----l~-~~~~i~~~~~v~~v~~~~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-----~~g~i~v~~~~  307 (454)
                          +.+.    +. ..++++.+..|+++..++  .+.+.+|+++++|.||+|+|.+|+..++.     .++.+.+|++.
T Consensus       184 ~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~gi~vd~~~  263 (396)
T PRK09754        184 APPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDEAC  263 (396)
T ss_pred             cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcCCCEEECCCC
Confidence                2221    22 235788888999987543  35678999999999999999999977643     22446666655


Q ss_pred             cccccCcccCCCCCCCceEecccccc----------cchhHHHHHHHHHHHHHcCCC
Q 044575          308 VGPLYEHTFPPSLAPSLSFVGIPRKL----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       308 ~~~~~~~~~~~~~~p~l~~iG~~~~~----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +          ++.|++|++||+...          ..++.|..||+.+|++|.|..
T Consensus       264 ~----------ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~  310 (396)
T PRK09754        264 R----------TCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP  310 (396)
T ss_pred             c----------cCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence            4          456999999998732          235789999999999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.97  E-value=1.8e-29  Score=267.64  Aligned_cols=274  Identities=20%  Similarity=0.284  Sum_probs=195.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ++|||||+|+||+.+|..|++.    +++|+||+++++++    |.++              ..  +.   .+..     
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~--------------~L--~~---~~~~-----   55 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRV--------------HL--SS---YFSH-----   55 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCC--------------cc--hH---hHcC-----
Confidence            4899999999999999999864    47999999987642    1111              00  00   0000     


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                               ...+++.....++.++.++.  ++.+++|++|+..            ..+|.+.++.     ++.||+|||
T Consensus        56 ---------~~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~------------~~~V~~~~G~-----~i~yD~LVI  107 (847)
T PRK14989         56 ---------HTAEELSLVREGFYEKHGIK--VLVGERAITINRQ------------EKVIHSSAGR-----TVFYDKLIM  107 (847)
T ss_pred             ---------CCHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCC------------CcEEEECCCc-----EEECCEEEE
Confidence                     01133333334555667777  8888899999865            4567766554     789999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeec-CCC--CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-cc
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHI-YRV--PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-GL  244 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~-~~~--~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-~~  244 (454)
                      |||  +.|+.|++||.+......+++.. ...  .....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+ .+
T Consensus       108 ATG--s~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~l  185 (847)
T PRK14989        108 ATG--SYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQL  185 (847)
T ss_pred             CCC--CCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhc
Confidence            999  89999999998643211111111 000  0112468999999999999999999999999999999887643 22


Q ss_pred             --------hhhhcc-CCCeEEcCceeEEecCC-----cEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceee
Q 044575          245 --------SKVISK-HNNLHLHPQIDCLREDG-----RVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVV  303 (454)
Q Consensus       245 --------~~~l~~-~~~i~~~~~v~~v~~~~-----~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v  303 (454)
                              .+.+.+ .++++.+..++++..++     .+.+.||+++++|.||+|+|++|+..++.       ++|.|.|
T Consensus       186 d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~V  265 (847)
T PRK14989        186 DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVI  265 (847)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEE
Confidence                    223333 34788888899886432     47788999999999999999999987643       3466777


Q ss_pred             CCCCcccccCcccCCCCCCCceEeccccccc-----chhHHHHHHHHHHHHHcCCC
Q 044575          304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-----GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-----~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |++.+          ++.|++|++|++....     ....+..||+.+|.+|.|..
T Consensus       266 D~~l~----------Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~  311 (847)
T PRK14989        266 NDSCQ----------TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE  311 (847)
T ss_pred             CCCCc----------CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence            77665          5579999999998542     23567899999999999874

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.97  E-value=5.3e-29  Score=264.49  Aligned_cols=271  Identities=18%  Similarity=0.227  Sum_probs=193.0

Q ss_pred             EEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           15 VCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        15 VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      |||||||+||+++|.+|++.   +++|+|||+++.++    |.++              .  .+..   +.+        
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r~--------------~--L~~~---l~g--------   49 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNRI--------------L--LSSV---LQG--------   49 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----cccc--------------c--ccHH---HCC--------
Confidence            68999999999999999875   46999999988652    1110              0  0000   000        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                           -.+.+++.....++.++.++.  ++++++|++|+..            .++|++.++.     ++.||+||||||
T Consensus        50 -----~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~------------~k~V~~~~g~-----~~~yD~LVlATG  105 (785)
T TIGR02374        50 -----EADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTD------------QKQVITDAGR-----TLSYDKLILATG  105 (785)
T ss_pred             -----CCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECC------------CCEEEECCCc-----EeeCCEEEECCC
Confidence                 001123332334455666777  8889999999875            5567776654     789999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-c-
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-L-  244 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-~-  244 (454)
                        +.|+.|++||.+...  ++......+.     ....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+. + 
T Consensus       106 --s~p~~p~ipG~~~~~--v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld  181 (785)
T TIGR02374       106 --SYPFILPIPGADKKG--VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLD  181 (785)
T ss_pred             --CCcCCCCCCCCCCCC--EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcC
Confidence              899999999976422  1211111111     1124689999999999999999999999999999998876321 2 


Q ss_pred             -------hhhhccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeCCCCc
Q 044575          245 -------SKVISKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDDRV  308 (454)
Q Consensus       245 -------~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~~~  308 (454)
                             .+.+.+. ++++.+..++++..++   .|.++||+++++|.||+|+|++|+.+++..     ++.+.+|++.+
T Consensus       182 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd~~~~  261 (785)
T TIGR02374       182 QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQ  261 (785)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccCCCEEECCCcc
Confidence                   2223333 4788888888886543   478899999999999999999999876432     24566666554


Q ss_pred             ccccCcccCCCCCCCceEeccccccc-----chhHHHHHHHHHHHHHcCCC
Q 044575          309 GPLYEHTFPPSLAPSLSFVGIPRKLI-----GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       309 ~~~~~~~~~~~~~p~l~~iG~~~~~~-----~~~~a~~qa~~~a~~i~g~~  354 (454)
                                ++.|++|++|++....     .+..+..||+.+|.+|.|..
T Consensus       262 ----------Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~  302 (785)
T TIGR02374       262 ----------TSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE  302 (785)
T ss_pred             ----------cCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence                      4579999999997532     23457799999999999976

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.96  E-value=1.2e-28  Score=247.22  Aligned_cols=264  Identities=27%  Similarity=0.339  Sum_probs=181.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g------------------------------------  175 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG------------------------------------  175 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec------------------------------------
Confidence            46899999999999999999999999999999999899887632                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.....+...+.++.  +++++.|                  .+.+++.+.      ...||+|||||
T Consensus       176 ---ip~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v------------------~~~v~~~~~------~~~yd~viiAt  226 (449)
T TIGR01316       176 ---IPEFRLPKEIVVTEIKTLKKLGVT--FRMNFLV------------------GKTATLEEL------FSQYDAVFIGT  226 (449)
T ss_pred             ---CCCccCCHHHHHHHHHHHHhCCcE--EEeCCcc------------------CCcCCHHHH------HhhCCEEEEeC
Confidence               001111145555555556666766  6666543                  112333221      23699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC----------C----CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----------R----VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----------~----~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                      |. +.|+.|++||.+. .+ +++...+          .    ......+++|+|||+|.+|+|+|..+.+.|.+|+++.|
T Consensus       227 Ga-~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~  303 (449)
T TIGR01316       227 GA-GLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYR  303 (449)
T ss_pred             CC-CCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEee
Confidence            93 2688888998753 11 2222211          0    11234689999999999999999999999999999998


Q ss_pred             cCCcCc-----cchhhhccCCCeEEcCceeEEecC--C---cEEEe---------CC-----------CEEeeceEEEcc
Q 044575          237 SLNISE-----GLSKVISKHNNLHLHPQIDCLRED--G---RVTFV---------DG-----------CWVTADTILYCT  286 (454)
Q Consensus       237 ~~~~~~-----~~~~~l~~~~~i~~~~~v~~v~~~--~---~v~~~---------dG-----------~~i~~D~vI~at  286 (454)
                      ++....     .+..+..+.++++....+.++..+  +   .|.+.         +|           .++++|.||+|+
T Consensus       304 ~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~Ai  383 (449)
T TIGR01316       304 RTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAI  383 (449)
T ss_pred             cCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECC
Confidence            764311     111222334577777777777532  2   23333         23           258899999999


Q ss_pred             CcccCCcCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575          287 GYSYSFPFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       287 G~~~~~~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g  352 (454)
                      |+.|+..++..       +|.+.+|+...          ++.|++|++||+..++ ....|..||+.+|..|..
T Consensus       384 G~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       384 GNGSNPIMAETTRLKTSERGTIVVDEDQR----------TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             CCCCCchhhhccCcccCCCCeEEeCCCCc----------cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999876542       34455554332          4579999999998654 457899999999988743

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.96  E-value=2.5e-29  Score=230.34  Aligned_cols=316  Identities=16%  Similarity=0.168  Sum_probs=202.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cccccccccceec-CCccccccCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EVHSSVYASLRLT-SPREIMGYTDFPFV   87 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~   87 (454)
                      ..+||+|||+||+|..||..+++.|++.+++|++..+||+|.+.+|+|+|  +..|.+|+.+... ..+.....+...+ 
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~-  116 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL-  116 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec-
Confidence            46999999999999999999999999999999999999999999999998  4445555544431 1111111111111 


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFG--LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                                 ....+.....+.++++.  +...+. .-.|+.+.-   .+.+.+    ..+|+....+ +....+.+++
T Consensus       117 -----------dl~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG---~gsf~~----p~~V~v~k~d-g~~~ii~aKn  176 (506)
T KOG1335|consen  117 -----------DLQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKG---FGSFLD----PNKVSVKKID-GEDQIIKAKN  176 (506)
T ss_pred             -----------CHHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEee---eEeecC----CceEEEeccC-CCceEEeeee
Confidence                       22344444444443331  110011 112222221   111111    2234443322 3456889999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS  245 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~  245 (454)
                      +|||||  |  ..+++||+.--...++.|. -...-..-+++++|||+|.+|+|++.-..++|.+||+++--+.+.+.++
T Consensus       177 IiiATG--S--eV~~~PGI~IDekkIVSSt-gALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD  251 (506)
T KOG1335|consen  177 IIIATG--S--EVTPFPGITIDEKKIVSST-GALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD  251 (506)
T ss_pred             EEEEeC--C--ccCCCCCeEecCceEEecC-CccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence            999999  4  2344568754334444433 2222233458999999999999999999999999999998887755444


Q ss_pred             hhh--------cc-CCCeEEcCceeEEecCC----cEEEeC---C--CEEeeceEEEccCcccCCcCCCC-CCceeeCCC
Q 044575          246 KVI--------SK-HNNLHLHPQIDCLREDG----RVTFVD---G--CWVTADTILYCTGYSYSFPFLDT-KGIVVVDDD  306 (454)
Q Consensus       246 ~~l--------~~-~~~i~~~~~v~~v~~~~----~v~~~d---G--~~i~~D~vI~atG~~~~~~~l~~-~g~i~v~~~  306 (454)
                      ..+        .+ ...+.+++.+...+.++    .|.+.+   |  ++++||++++|+|++|-+.-|+- +-.+..|+.
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r  331 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKR  331 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccc
Confidence            332        22 24788888888877543    244433   3  35789999999999998776541 112222332


Q ss_pred             CcccccCcccCCCCCCCceEecccccccch-hHHHHHHHHHHHHHcCCC
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKLIGF-PFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~-~~a~~qa~~~a~~i~g~~  354 (454)
                      .+. .....|. +..|++|+|||+..++.+ +-||.|+..+...++|..
T Consensus       332 ~rv-~v~~~f~-t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~  378 (506)
T KOG1335|consen  332 GRV-IVNTRFQ-TKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH  378 (506)
T ss_pred             cce-ecccccc-ccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence            221 1122233 467999999999987765 799999999999998773

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.96  E-value=1.7e-29  Score=235.27  Aligned_cols=350  Identities=17%  Similarity=0.127  Sum_probs=229.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .++++|||+|+|++|.+.++.|...-++|+||+.++++--+|.    .|+.              +-+.           
T Consensus        53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----LpS~--------------~vGT-----------  103 (491)
T KOG2495|consen   53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----LPST--------------TVGT-----------  103 (491)
T ss_pred             CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----cCCc--------------cccc-----------
Confidence            3568999999999999999999999999999999987633333    2211              1000           


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC---CCeEEEEEeCEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK---ADKVVEEVFDAV  166 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~d~v  166 (454)
                              ..-+.+.+.+...+.+.+-. .-.+..+..+|++.            ..+|.++...   ...+..+.||||
T Consensus       104 --------ve~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~------------~k~V~~~s~t~~~~~~e~~i~YDyL  162 (491)
T KOG2495|consen  104 --------VELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPD------------NKKVHCRSLTADSSDKEFVIGYDYL  162 (491)
T ss_pred             --------eeehhhhhhHHHHhhccCCC-ceEEecccEeeccc------------ccEEEEeeeccCCCcceeeecccEE
Confidence                    11244556666666654432 12445666677765            3344444322   134568899999


Q ss_pred             EEccCCCCCCCCCCCCCcCCc---cceeEEeecC----------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhh
Q 044575          167 VVATGHYSYPRLPSIKGMDKW---KRKQMHSHIY----------------RVPEPFRNEVVVVVGNSLSGQDISMELVEV  227 (454)
Q Consensus       167 ViAtG~~~~p~~p~i~G~~~~---~~~~~~~~~~----------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~  227 (454)
                      |+|+|  +.++.+.+||..+.   ...+-++...                .+++..+--++||||||++|+|+|.+|++.
T Consensus       163 ViA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Df  240 (491)
T KOG2495|consen  163 VIAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADF  240 (491)
T ss_pred             EEecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHH
Confidence            99999  89999999998763   2222222222                111222334899999999999999999975


Q ss_pred             c--------------CeEEEecccCCcCccchhhhccC---------CCeEEcCceeEEecCCcEEEeCC----CEEeec
Q 044575          228 A--------------KEVHLSAKSLNISEGLSKVISKH---------NNLHLHPQIDCLREDGRVTFVDG----CWVTAD  280 (454)
Q Consensus       228 ~--------------~~V~l~~r~~~~~~~~~~~l~~~---------~~i~~~~~v~~v~~~~~v~~~dG----~~i~~D  280 (454)
                      -              .+||+++..+.+++.|++.+.++         .++..++.|..+.+.. ++.+++    ++|++-
T Consensus       241 i~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~-I~~~~~~g~~~~iPYG  319 (491)
T KOG2495|consen  241 IPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT-IHAKTKDGEIEEIPYG  319 (491)
T ss_pred             HHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE-EEEEcCCCceeeecce
Confidence            2              26999999998888887766543         3677778888886653 665544    468899


Q ss_pred             eEEEccCcccCCcC-------CCCCC--ceeeCCCCcccccCcccCCCCCCCceEecccccc----cchhHHHHHHHHHH
Q 044575          281 TILYCTGYSYSFPF-------LDTKG--IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIA  347 (454)
Q Consensus       281 ~vI~atG~~~~~~~-------l~~~g--~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a  347 (454)
                      +++|+||..|. |+       +++.+  .+.+|+.+++         .+.+|+|++|||...    ++.++|++||.|+|
T Consensus       320 ~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV---------~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLA  389 (491)
T KOG2495|consen  320 LLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRV---------KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLA  389 (491)
T ss_pred             EEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeec---------cCcCceEEeccccccccCccHHHHHHHHHHHHH
Confidence            99999999987 43       33455  6777887664         346789999999822    35579999999999


Q ss_pred             HHHcCCC---CCCCHHHHHHHHHHHHhhhhhcCCCCCcccc--------------------cccHHHHHHHHH-HcCCCC
Q 044575          348 QLLSGKR---TLPSWDQMMQSVKEFYHSRDVAGIPKHNTHD--------------------IANFEYCDRYAD-QIGFPH  403 (454)
Q Consensus       348 ~~i~g~~---~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~y~~~l~~-~~g~~~  403 (454)
                      +++.-..   .+|..+.+. ......+..+    +-++.|.                    ....+.+.++.| ...+..
T Consensus       390 k~fn~m~k~~~~~e~~~~r-~~~~~~~~f~----PF~Y~H~GalA~lG~ekaiAdl~~g~~~~~~G~~s~~lWrS~Yls~  464 (491)
T KOG2495|consen  390 KNFNKMGKGGNLPEGPSAR-LRGEGRHQFK----PFKYKHLGALAYLGREKAIADLPVGKMWVSAGGSSFWLWRSAYLSK  464 (491)
T ss_pred             HHHHHHhcccCCCccchhh-hhhhhhhccC----CcccccccceeeccccchhhcCccCCeeeeccchhhHHHHHHHHHH
Confidence            9885322   222211111 1111111111    1111111                    001245555555 666666


Q ss_pred             chHHHHHHHHHHhhCCccccccccCC
Q 044575          404 LEEWRKGLCISALVNSDANLETYRDS  429 (454)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~~~~r~~  429 (454)
                      ..+||+|.+  +..+|....++.||.
T Consensus       465 ~~S~R~R~l--V~~dW~~~~~fGRd~  488 (491)
T KOG2495|consen  465 LVSWRNRFL--VAIDWEKTFFFGRDS  488 (491)
T ss_pred             hhhhhhhee--eeeheeeeEEecccc
Confidence            678999999  999999888888885

>PRK12831 putative oxidoreductase; Provisional

Probab=99.96  E-value=1.7e-28  Score=246.40  Aligned_cols=268  Identities=22%  Similarity=0.284  Sum_probs=181.0

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ...++|+||||||||++||..|++.|++|+|||+.+.+||.+.+.                          ++.+.+   
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--------------------------ip~~~l---  188 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG--------------------------IPEFRL---  188 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec--------------------------CCCccC---
Confidence            346899999999999999999999999999999999999988642                          001111   


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                               +.+++..+..++++++++.  +++++.|..                  .+++.+..    ..+.||+||||
T Consensus       189 ---------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~------------------~v~~~~~~----~~~~~d~viiA  235 (464)
T PRK12831        189 ---------PKETVVKKEIENIKKLGVK--IETNVVVGK------------------TVTIDELL----EEEGFDAVFIG  235 (464)
T ss_pred             ---------CccHHHHHHHHHHHHcCCE--EEcCCEECC------------------cCCHHHHH----hccCCCEEEEe
Confidence                     1134666666777778877  777875521                  11121111    13469999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeec----------CC---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHI----------YR---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~----------~~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                      ||. ..|+.|++||.+...  ++....          +.   ......+++|+|||+|++|+|+|..+.+.|.+|+++.|
T Consensus       236 tGa-~~~~~l~ipG~~~~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r  312 (464)
T PRK12831        236 SGA-GLPKFMGIPGENLNG--VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR  312 (464)
T ss_pred             CCC-CCCCCCCCCCcCCcC--cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence            993 268888899875311  121111          11   11234689999999999999999999999999999998


Q ss_pred             cCCc--Cccc---hhhhccCCCeEEcCceeEEec--CCc---EEEe------------------CCC--EEeeceEEEcc
Q 044575          237 SLNI--SEGL---SKVISKHNNLHLHPQIDCLRE--DGR---VTFV------------------DGC--WVTADTILYCT  286 (454)
Q Consensus       237 ~~~~--~~~~---~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~------------------dG~--~i~~D~vI~at  286 (454)
                      +...  ....   .....+.++++....+.++..  ++.   |.+.                  +|+  ++++|.||+|+
T Consensus       313 ~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai  392 (464)
T PRK12831        313 RSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL  392 (464)
T ss_pred             cCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence            6542  2111   122234456777777777642  222   2221                  233  58899999999


Q ss_pred             CcccCCcCCCC--------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHc
Q 044575          287 GYSYSFPFLDT--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       287 G~~~~~~~l~~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~  351 (454)
                      |+.|+..++..        .|.+.+|+.        .+. ++.|++|++||+..++ ....|..||+.+|..|.
T Consensus       393 G~~p~~~~~~~~~gl~~~~~G~i~vd~~--------~~~-Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~  457 (464)
T PRK12831        393 GTSPNPLISSTTKGLKINKRGCIVADEE--------TGL-TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID  457 (464)
T ss_pred             CCCCChhhhcccCCceECCCCcEEECCC--------CCc-cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            99999876543        233444433        111 4579999999998654 34688889998887764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.96  E-value=3.8e-28  Score=255.81  Aligned_cols=265  Identities=22%  Similarity=0.266  Sum_probs=178.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||||++||..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~------------------------------------  581 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI------------------------------------  581 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee------------------------------------
Confidence            46899999999999999999999999999999999999987631                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++..+..+.....++.  +++++.| .++..                   +..     ...||+|||||
T Consensus       582 ---IP~~Rlp~evL~~die~l~~~GVe--~~~gt~V-di~le-------------------~L~-----~~gYDaVILAT  631 (1019)
T PRK09853        582 ---IPQFRIPAELIQHDIEFVKAHGVK--FEFGCSP-DLTVE-------------------QLK-----NEGYDYVVVAI  631 (1019)
T ss_pred             ---cccccccHHHHHHHHHHHHHcCCE--EEeCcee-EEEhh-------------------hhe-----eccCCEEEECc
Confidence               011111234455555566667876  8888766 22211                   111     34599999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC-----C-CCCCCCCCeEEEEcCCCCHHHHHHHHhhh-c-CeEEEecccCC-cC
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY-----R-VPEPFRNEVVVVVGNSLSGQDISMELVEV-A-KEVHLSAKSLN-IS  241 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~-----~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~-~~V~l~~r~~~-~~  241 (454)
                      |. ..|..+.+||.+.   .++++..+     . ......+++|+|||||++|+|+|..+.+. + ++|+++.|+.. ..
T Consensus       632 GA-~~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~M  707 (1019)
T PRK09853        632 GA-DKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEM  707 (1019)
T ss_pred             CC-CCCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccc
Confidence            94 2355566777542   12222211     1 11123589999999999999999998887 3 58999998763 22


Q ss_pred             c----cchhhhccCCCeEEcCceeEEecCCcEE-------------------EeCCCEEeeceEEEccCcccCCcCCCCC
Q 044575          242 E----GLSKVISKHNNLHLHPQIDCLREDGRVT-------------------FVDGCWVTADTILYCTGYSYSFPFLDTK  298 (454)
Q Consensus       242 ~----~~~~~l~~~~~i~~~~~v~~v~~~~~v~-------------------~~dG~~i~~D~vI~atG~~~~~~~l~~~  298 (454)
                      +    .+.+.+.+.++++....+.++..++.+.                   ..++.++++|.||+|+|.+|+.+++...
T Consensus       708 PA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~  787 (1019)
T PRK09853        708 PAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN  787 (1019)
T ss_pred             cccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhc
Confidence            2    2333334445666666666664333221                   1223468899999999999998876532


Q ss_pred             -------CceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCCC
Q 044575          299 -------GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       299 -------g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~~  355 (454)
                             |.+.+|+...          ++.|++|++||+..++ +...|..||+.+|++|.+...
T Consensus       788 GL~ld~~G~I~VDetlq----------Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        788 GIPLDKKGWPVVDANGE----------TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             CccccCCCCEEeCCCcc----------cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence                   3333433222          4569999999998544 457899999999999988654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.96  E-value=1.4e-27  Score=240.57  Aligned_cols=263  Identities=22%  Similarity=0.250  Sum_probs=180.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g------------------------------------  182 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG------------------------------------  182 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc------------------------------------
Confidence            45899999999999999999999999999999999998876531                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.+....++..+..+.++++++.  +++++.|..                  .+++.+.      ...||+||+||
T Consensus       183 ---ip~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~~------------------~v~~~~~------~~~~d~vvlAt  233 (457)
T PRK11749        183 ---IPEFRLPKDIVDREVERLLKLGVE--IRTNTEVGR------------------DITLDEL------RAGYDAVFIGT  233 (457)
T ss_pred             ---CCCccCCHHHHHHHHHHHHHcCCE--EEeCCEECC------------------ccCHHHH------HhhCCEEEEcc
Confidence               011112246667777777777776  777766521                  0111111      25799999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC----C----CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCc-
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----R----VPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNI-  240 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----~----~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~-  240 (454)
                      |. ..|+.+.+||.+. .+ +++...+    .    ......+++|+|||+|.+|+|+|..+.+.|. +|+++.|++.. 
T Consensus       234 Ga-~~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~  310 (457)
T PRK11749        234 GA-GLPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE  310 (457)
T ss_pred             CC-CCCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc
Confidence            94 2477777888653 11 2222221    0    0122368999999999999999999999987 89999986542 


Q ss_pred             Ccc----chhhhccCCCeEEcCceeEEecCC----cEEEe-------------------CCCEEeeceEEEccCcccCCc
Q 044575          241 SEG----LSKVISKHNNLHLHPQIDCLREDG----RVTFV-------------------DGCWVTADTILYCTGYSYSFP  293 (454)
Q Consensus       241 ~~~----~~~~l~~~~~i~~~~~v~~v~~~~----~v~~~-------------------dG~~i~~D~vI~atG~~~~~~  293 (454)
                      .+.    +..+....++++.+..+.++..++    .|++.                   +++++++|.||+|+|++|+..
T Consensus       311 ~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  390 (457)
T PRK11749        311 MPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPL  390 (457)
T ss_pred             CCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCch
Confidence            111    122223345788888888886443    15442                   223688999999999999966


Q ss_pred             CCC--------CCCceeeCC-CCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHc
Q 044575          294 FLD--------TKGIVVVDD-DRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       294 ~l~--------~~g~i~v~~-~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~  351 (454)
                      ++.        +.|.+.+|+ ...          ++.|++|++||+..+. ....|..||+.+|.+|.
T Consensus       391 l~~~~~gl~~~~~g~i~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~  448 (457)
T PRK11749        391 ILSTTPGLELNRWGTIIADDETGR----------TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH  448 (457)
T ss_pred             hhccccCccCCCCCCEEeCCCCCc----------cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence            543        234455554 222          4569999999998653 45688999999987764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.95  E-value=4.9e-27  Score=251.35  Aligned_cols=279  Identities=18%  Similarity=0.169  Sum_probs=185.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||||||+||..|++.|++|+|||+.+.+||...|.                                    
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------------------  348 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------------------  348 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------------------
Confidence            46899999999999999999999999999999999999997742                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.+...+..+..|+.  +++|+.|.                  ..+++.+..     ...||+|||||
T Consensus       349 ---IP~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG------------------~dit~~~l~-----~~~yDAV~LAt  400 (944)
T PRK12779        349 ---IPEFRLPNQLIDDVVEKIKLLGGR--FVKNFVVG------------------KTATLEDLK-----AAGFWKIFVGT  400 (944)
T ss_pred             ---CCCCcChHHHHHHHHHHHHhhcCe--EEEeEEec------------------cEEeHHHhc-----cccCCEEEEeC
Confidence               122333356666666777777877  77776542                  224443322     34699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC--------------C-CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY--------------R-VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~--------------~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                      |. ..|+.+++||.+. .+ +..+.++              . ......||+|+|||||.+|+|+|..+.+.|++|+++.
T Consensus       401 GA-~~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~  477 (944)
T PRK12779        401 GA-GLPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVY  477 (944)
T ss_pred             CC-CCCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            94 3688888998653 11 1111111              0 0112368999999999999999999999999999999


Q ss_pred             ccCCc-Ccc----chhhhccCCCeEEcCceeEEecC--C-cE---EE-----------------eCCC--EEeeceEEEc
Q 044575          236 KSLNI-SEG----LSKVISKHNNLHLHPQIDCLRED--G-RV---TF-----------------VDGC--WVTADTILYC  285 (454)
Q Consensus       236 r~~~~-~~~----~~~~l~~~~~i~~~~~v~~v~~~--~-~v---~~-----------------~dG~--~i~~D~vI~a  285 (454)
                      |++.. .+.    +.....+.++++....+.++..+  + .|   .+                 .+|+  ++++|.||+|
T Consensus       478 rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~A  557 (944)
T PRK12779        478 RRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMA  557 (944)
T ss_pred             ecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEc
Confidence            87532 111    22223344566666666666432  1 11   11                 1233  4889999999


Q ss_pred             cCcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCCCCC
Q 044575          286 TGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKRTLP  357 (454)
Q Consensus       286 tG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~~lp  357 (454)
                      +|+.|+..+......+.+++.......++.+. ++.|++|++||+..+. ....|..+++.+|..|...+.+.
T Consensus       558 iG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~-Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~  629 (944)
T PRK12779        558 LGNTANPIMKDAEPGLKTNKWGTIEVEKGSQR-TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT  629 (944)
T ss_pred             CCcCCChhhhhcccCceECCCCCEEECCCCCc-cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999864322211222232211111111122 4579999999999765 34688899999999987765543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.95  E-value=2.1e-27  Score=233.24  Aligned_cols=268  Identities=18%  Similarity=0.253  Sum_probs=179.7

Q ss_pred             cEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +|||||||+||+.+|++|+++   +.+|+|||+++..                  .|...   .|.       +      
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~------------------~~~~~---~~~-------~------   46 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT------------------PYSGM---LPG-------M------   46 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC------------------cccch---hhH-------H------
Confidence            599999999999999999754   6899999997642                  11110   000       0      


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         ...-...+++...+.++++++++.  +. ..+|++|+..            ..+|.+.++.     ++.||+|||||
T Consensus        47 ---~~g~~~~~~~~~~~~~~~~~~gv~--~~-~~~v~~id~~------------~~~V~~~~g~-----~~~yD~LviAt  103 (364)
T TIGR03169        47 ---IAGHYSLDEIRIDLRRLARQAGAR--FV-IAEATGIDPD------------RRKVLLANRP-----PLSYDVLSLDV  103 (364)
T ss_pred             ---HheeCCHHHhcccHHHHHHhcCCE--EE-EEEEEEEecc------------cCEEEECCCC-----cccccEEEEcc
Confidence               000012245555666777777776  44 4589999876            3467777654     68999999999


Q ss_pred             CCCCCCCCCCCCCcCCcccee--E-Eeec----CCC-CC-CCCCCeEEEEcCCCCHHHHHHHHhhh----c--CeEEEec
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQ--M-HSHI----YRV-PE-PFRNEVVVVVGNSLSGQDISMELVEV----A--KEVHLSA  235 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~--~-~~~~----~~~-~~-~~~~k~vvVVG~G~sg~e~A~~l~~~----~--~~V~l~~  235 (454)
                      |  +.|..|.+||..+.....  + +...    +.. .+ ...+++|+|||+|.+|+|+|..|++.    +  .+|+++ 
T Consensus       104 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-  180 (364)
T TIGR03169       104 G--STTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-  180 (364)
T ss_pred             C--CCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-
Confidence            9  899999999854311000  0 0000    000 00 12357999999999999999999863    2  489999 


Q ss_pred             ccCCcCccc--------hhhhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcC------CCCCCc
Q 044575          236 KSLNISEGL--------SKVISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPF------LDTKGI  300 (454)
Q Consensus       236 r~~~~~~~~--------~~~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~------l~~~g~  300 (454)
                      +.+.+.+.+        .+.+.+ .++++.+..++++..+ .|.+.+|+++++|.||+|+|.+|+..+      +++.|.
T Consensus       181 ~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~  259 (364)
T TIGR03169       181 AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGF  259 (364)
T ss_pred             eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCe
Confidence            445443222        222322 3578888889998655 588899999999999999999998322      123456


Q ss_pred             eeeCCCCcccccCcccCCCCCCCceEeccccccc------chhHHHHHHHHHHHHHc
Q 044575          301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI------GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~------~~~~a~~qa~~~a~~i~  351 (454)
                      +.+|+..+.         .+.|++|++||+....      ....|..||+.+|++|.
T Consensus       260 i~vd~~l~~---------~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~  307 (364)
T TIGR03169       260 LRVDPTLQS---------LSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR  307 (364)
T ss_pred             EEECCcccc---------CCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence            666664431         2469999999998432      23478899999988774

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.95  E-value=9.6e-27  Score=226.90  Aligned_cols=278  Identities=24%  Similarity=0.251  Sum_probs=180.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ...++|+|||||++|+++|..|++.|++|++||+.+.+||.+....                          ..+.    
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~--------------------------~~~~----   65 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI--------------------------PEFR----   65 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC--------------------------cccc----
Confidence            3467999999999999999999999999999999998888765210                          0000    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc--CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML--DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                              .+.+.+...+.++.++ ++.  ++.++.|..++..  ....        .|.......+   ...+.||+||
T Consensus        66 --------~~~~~~~~~~~~l~~~-~i~--~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~d~lv  123 (352)
T PRK12770         66 --------IPIERVREGVKELEEA-GVV--FHTRTKVCCGEPLHEEEGD--------EFVERIVSLE---ELVKKYDAVL  123 (352)
T ss_pred             --------cCHHHHHHHHHHHHhC-CeE--EecCcEEeecccccccccc--------ccccccCCHH---HHHhhCCEEE
Confidence                    1224455555555443 665  7778777655431  1100        2222111111   1136899999


Q ss_pred             EccCCCC-CCCCCCCCCcCCccceeEEe---------ecC--C---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe-E
Q 044575          168 VATGHYS-YPRLPSIKGMDKWKRKQMHS---------HIY--R---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-V  231 (454)
Q Consensus       168 iAtG~~~-~p~~p~i~G~~~~~~~~~~~---------~~~--~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~-V  231 (454)
                      ||||  + .|..|++||.+...  +..+         ..+  .   ....+.+++|+|||+|.+|+|+|..+...+.+ |
T Consensus       124 iAtG--s~~~~~~~ipg~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V  199 (352)
T PRK12770        124 IATG--TWKSRKLGIPGEDLPG--VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV  199 (352)
T ss_pred             EEeC--CCCCCcCCCCCccccC--ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence            9999  5 57888888875321  1111         101  1   11134579999999999999999999988886 9


Q ss_pred             EEecccCCcCcc----chhhhc-cCCCeEEcCceeEEecCCc---EEEe------------------C--CCEEeeceEE
Q 044575          232 HLSAKSLNISEG----LSKVIS-KHNNLHLHPQIDCLREDGR---VTFV------------------D--GCWVTADTIL  283 (454)
Q Consensus       232 ~l~~r~~~~~~~----~~~~l~-~~~~i~~~~~v~~v~~~~~---v~~~------------------d--G~~i~~D~vI  283 (454)
                      +++.|++.....    ..+.+. ..++++.+..+.++..++.   |.+.                  +  ++.+++|.||
T Consensus       200 tvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi  279 (352)
T PRK12770        200 YLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV  279 (352)
T ss_pred             EEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence            999987643211    112233 3356777777777764432   2221                  2  2468899999


Q ss_pred             EccCcccCCcCCCC--------CCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCC
Q 044575          284 YCTGYSYSFPFLDT--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       284 ~atG~~~~~~~l~~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~  353 (454)
                      +|+|++|+..+..+        .+.+.+|+...          +..|++|++||+... .....|..||+.+|.++...
T Consensus       280 ~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~----------t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~  348 (352)
T PRK12770        280 FAIGEIPTPPFAKECLGIELNRKGEIVVDEKHM----------TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEW  348 (352)
T ss_pred             ECcccCCCchhhhcccCceecCCCcEeeCCCcc----------cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999776443        23344444322          346999999998863 34578899999999877543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.95  E-value=9e-27  Score=247.71  Aligned_cols=265  Identities=23%  Similarity=0.265  Sum_probs=177.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||||++||..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g------------------------------------  473 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG------------------------------------  473 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec------------------------------------
Confidence            46899999999999999999999999999999988899887642                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.....+...++++.  +++++.|.                  ..+++.+..     ...||+|||||
T Consensus       474 ---ip~~rlp~~~~~~~~~~l~~~gv~--~~~~~~v~------------------~~v~~~~l~-----~~~ydavvlAt  525 (752)
T PRK12778        474 ---IPEFRLPKKIVDVEIENLKKLGVK--FETDVIVG------------------KTITIEELE-----EEGFKGIFIAS  525 (752)
T ss_pred             ---CCCCCCCHHHHHHHHHHHHHCCCE--EECCCEEC------------------CcCCHHHHh-----hcCCCEEEEeC
Confidence               011111134455555556667776  77776541                  112222221     35699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC----------C---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe-EEEecc
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----------R---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-VHLSAK  236 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----------~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~-V~l~~r  236 (454)
                      |. ..|+.|++||.+...  ++++.++          .   ......+++|+|||+|.+|+|+|..+.+.|.+ |+++.|
T Consensus       526 Ga-~~~~~l~ipG~~~~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r  602 (752)
T PRK12778        526 GA-GLPNFMNIPGENSNG--VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYR  602 (752)
T ss_pred             CC-CCCCCCCCCCCCCCC--cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeee
Confidence            94 268888899865311  2222211          1   11224689999999999999999999999887 999998


Q ss_pred             cCCc--Cccc---hhhhccCCCeEEcCceeEEec--CCc---EEEe---------C---------CC--EEeeceEEEcc
Q 044575          237 SLNI--SEGL---SKVISKHNNLHLHPQIDCLRE--DGR---VTFV---------D---------GC--WVTADTILYCT  286 (454)
Q Consensus       237 ~~~~--~~~~---~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~---------d---------G~--~i~~D~vI~at  286 (454)
                      ++..  ....   .....+.++++....+.++..  ++.   |.+.         +         |+  ++++|.||+|+
T Consensus       603 ~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~  682 (752)
T PRK12778        603 RSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV  682 (752)
T ss_pred             cCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECc
Confidence            7642  1111   122233346666666666642  221   2331         1         22  48899999999


Q ss_pred             CcccCCcCCCC--------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575          287 GYSYSFPFLDT--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       287 G~~~~~~~l~~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g  352 (454)
                      |+.|+..++..        .|.+.+|+...          ++.|++|++||+..++ ....|..|++.+|..|..
T Consensus       683 G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~----------Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        683 GVSPNPLVPSSIPGLELNRKGTIVVDEEMQ----------SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             CCCCCccccccccCceECCCCCEEeCCCCC----------CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999765432        23344443322          5679999999998654 457888999999887743

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.95  E-value=4.5e-26  Score=241.46  Aligned_cols=265  Identities=20%  Similarity=0.225  Sum_probs=172.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||||++||..|++.|++|+|||+++.+||...+.                   .                
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-------------------I----------------  580 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-------------------I----------------  580 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-------------------c----------------
Confidence            35799999999999999999999999999999999999987531                   0                


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                          +.|....+...+..+....+++.  +++++..                  ..++  ....     ...||+|||||
T Consensus       581 ----P~~rlp~e~l~~~ie~l~~~GVe--~~~g~~~------------------d~~v--e~l~-----~~gYDaVIIAT  629 (1012)
T TIGR03315       581 ----PEFRISAESIQKDIELVKFHGVE--FKYGCSP------------------DLTV--AELK-----NQGYKYVILAI  629 (1012)
T ss_pred             ----cccCCCHHHHHHHHHHHHhcCcE--EEEeccc------------------ceEh--hhhh-----cccccEEEECC
Confidence                01111134444444455556665  5554210                  1111  1111     34699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC----CC--CCCCCCCeEEEEcCCCCHHHHHHHHhhh-c-CeEEEecccCC-cC
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----RV--PEPFRNEVVVVVGNSLSGQDISMELVEV-A-KEVHLSAKSLN-IS  241 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----~~--~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~-~~V~l~~r~~~-~~  241 (454)
                      |. ..+..+.++|...   .++.+..+    ..  .....+++|+|||||.+|+|+|..+.+. | ++|+++.|+.. ..
T Consensus       630 GA-~~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~M  705 (1012)
T TIGR03315       630 GA-WKHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYM  705 (1012)
T ss_pred             CC-CCCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence            94 2344556777432   12222111    11  1124689999999999999999998886 6 58999998763 22


Q ss_pred             ----ccchhhhccCCCeEEcCceeEEecCCcEE-----------------EeCCC--EEeeceEEEccCcccCCcCCCC-
Q 044575          242 ----EGLSKVISKHNNLHLHPQIDCLREDGRVT-----------------FVDGC--WVTADTILYCTGYSYSFPFLDT-  297 (454)
Q Consensus       242 ----~~~~~~l~~~~~i~~~~~v~~v~~~~~v~-----------------~~dG~--~i~~D~vI~atG~~~~~~~l~~-  297 (454)
                          ..+.+.+.+.+++.....+.++.. +.++                 ..+|+  ++++|.||+|+|..|+..++.. 
T Consensus       706 pa~~eEl~~aleeGVe~~~~~~p~~I~~-g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~  784 (1012)
T TIGR03315       706 PASREELEEALEDGVDFKELLSPESFED-GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN  784 (1012)
T ss_pred             ccCHHHHHHHHHcCCEEEeCCceEEEEC-CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhc
Confidence                223333444455665555555542 2121                 12344  5789999999999999877542 


Q ss_pred             ------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCCC
Q 044575          298 ------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       298 ------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~~  355 (454)
                            .|.+.+|+..        .. ++.|++|++||+..++ ....|..||+.+|..|.++..
T Consensus       785 GL~ld~~G~I~VD~~~--------~~-Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~  840 (1012)
T TIGR03315       785 GIPLDEYGWPVVNQAT--------GE-TNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG  840 (1012)
T ss_pred             CcccCCCCCEEeCCCC--------Cc-cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence                  3444444321        11 4569999999997543 457899999999999987654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.94  E-value=3.5e-26  Score=238.60  Aligned_cols=262  Identities=22%  Similarity=0.270  Sum_probs=174.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g------------------------------------  235 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG------------------------------------  235 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec------------------------------------
Confidence            35799999999999999999999999999999999999988642                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.++..+.+.++++.  +++++.+. ++                 ++..+.      ...||+|||||
T Consensus       236 ---ip~~~~~~~~~~~~~~~l~~~Gv~--i~~~~~v~-~d-----------------v~~~~~------~~~~DaVilAt  286 (652)
T PRK12814        236 ---IPRFRLPESVIDADIAPLRAMGAE--FRFNTVFG-RD-----------------ITLEEL------QKEFDAVLLAV  286 (652)
T ss_pred             ---CCCCCCCHHHHHHHHHHHHHcCCE--EEeCCccc-Cc-----------------cCHHHH------HhhcCEEEEEc
Confidence               011112245555555566677776  67776441 11                 111111      22499999999


Q ss_pred             CCCCC-CCCCCCCCcCCccceeEEeecC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCc-Cc
Q 044575          171 GHYSY-PRLPSIKGMDKWKRKQMHSHIY-----RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNI-SE  242 (454)
Q Consensus       171 G~~~~-p~~p~i~G~~~~~~~~~~~~~~-----~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~-~~  242 (454)
                      |  +. +..+.+||.+. .+ ++....+     .......+++|+|||+|.+|+|+|..+.+.|. +|+++.|++.. .+
T Consensus       287 G--a~~~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp  362 (652)
T PRK12814        287 G--AQKASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP  362 (652)
T ss_pred             C--CCCCCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence            9  54 35667888653 22 2222111     11234578999999999999999999999875 69999987642 22


Q ss_pred             ----cchhhhccCCCeEEcCceeEEecC-CcE-----EEe---------------CCC--EEeeceEEEccCcccCCcCC
Q 044575          243 ----GLSKVISKHNNLHLHPQIDCLRED-GRV-----TFV---------------DGC--WVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       243 ----~~~~~l~~~~~i~~~~~v~~v~~~-~~v-----~~~---------------dG~--~i~~D~vI~atG~~~~~~~l  295 (454)
                          .+.+.+.+.++++....+.++..+ +.+     .+.               +|+  ++++|.||+|+|+.|+..++
T Consensus       363 a~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll  442 (652)
T PRK12814        363 ANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA  442 (652)
T ss_pred             CCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc
Confidence                233334455677777777666532 211     111               233  47899999999999998876


Q ss_pred             CC-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575          296 DT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL  350 (454)
Q Consensus       296 ~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i  350 (454)
                      ..       .|.+.+|+..        +. ++.|++|++||+...+ ....|..||+.+|.+|
T Consensus       443 ~~~gl~~~~~G~I~vd~~~--------~~-Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I  496 (652)
T PRK12814        443 EAAGIGTSRNGTVKVDPET--------LQ-TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI  496 (652)
T ss_pred             cccCccccCCCcEeeCCCC--------Cc-CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHH
Confidence            53       2344444321        11 4579999999998654 3467888888877654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.94  E-value=3.1e-25  Score=224.06  Aligned_cols=269  Identities=23%  Similarity=0.313  Sum_probs=171.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g------------------------------------  185 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG------------------------------------  185 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec------------------------------------
Confidence            45799999999999999999999999999999999999887631                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.....+.+.++++.  +++++.|.. +.                 ....      ....||+||+||
T Consensus       186 ---ip~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~~-----------------~~~~------~~~~~d~vvlAt  236 (471)
T PRK12810        186 ---IPDFKLEKEVIDRRIELMEAEGIE--FRTNVEVGK-DI-----------------TAEE------LLAEYDAVFLGT  236 (471)
T ss_pred             ---CCcccCCHHHHHHHHHHHHhCCcE--EEeCCEECC-cC-----------------CHHH------HHhhCCEEEEec
Confidence               011112244555555666777876  777776521 10                 0000      024699999999


Q ss_pred             CCCCC-CCCCCCCCcCCccceeEEee-------------cCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEec
Q 044575          171 GHYSY-PRLPSIKGMDKWKRKQMHSH-------------IYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSA  235 (454)
Q Consensus       171 G~~~~-p~~p~i~G~~~~~~~~~~~~-------------~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~  235 (454)
                      |  +. |+.+.+||.+. .+ +.+..             .+.......+++|+|||+|++|+|+|..+.+.+. +|+++.
T Consensus       237 G--a~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~  312 (471)
T PRK12810        237 G--AYKPRDLGIPGRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD  312 (471)
T ss_pred             C--CCCCCcCCCCCccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence            9  54 77778888653 11 11111             0111123468999999999999999998888875 799766


Q ss_pred             ccCCcCcc---------------chhhhccCCCeEEcCceeEEec-CCcE---EE-----eCC---------CEEeeceE
Q 044575          236 KSLNISEG---------------LSKVISKHNNLHLHPQIDCLRE-DGRV---TF-----VDG---------CWVTADTI  282 (454)
Q Consensus       236 r~~~~~~~---------------~~~~l~~~~~i~~~~~v~~v~~-~~~v---~~-----~dG---------~~i~~D~v  282 (454)
                      +.+.....               +.......++++....+.++.. ++.|   .+     .+|         .++++|.|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~V  392 (471)
T PRK12810        313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLV  392 (471)
T ss_pred             ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEE
Confidence            54432111               1112233457888888888863 3322   22     122         35889999


Q ss_pred             EEccCcccCCc-CCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575          283 LYCTGYSYSFP-FLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL  350 (454)
Q Consensus       283 I~atG~~~~~~-~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i  350 (454)
                      |+|+|.+|+.. ++...+ +.+++.......+..+. ++.|++|++||+..+. ....|..||+.+|..+
T Consensus       393 I~A~G~~p~~~~l~~~~g-l~~~~~g~i~vd~~~~~-Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i  460 (471)
T PRK12810        393 LLAMGFTGPEAGLLAQFG-VELDERGRVAAPDNAYQ-TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAI  460 (471)
T ss_pred             EECcCcCCCchhhccccC-cccCCCCCEEeCCCccc-CCCCCEEEccccCCCchhHHHHHHHHHHHHHHH
Confidence            99999999853 543211 22232211111101111 4579999999998654 3467888888887655

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.93  E-value=3.3e-25  Score=239.44  Aligned_cols=269  Identities=19%  Similarity=0.196  Sum_probs=176.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||||||+||..|++.|++|+|||+.+.+||...+.                                    
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------------------  472 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------------------  472 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------------------
Confidence            35799999999999999999999999999999999998876531                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.....+...++++.  +++++.|. .               .  ++.....    ....||+|||||
T Consensus       473 ---ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg-~---------------~--~~~~~l~----~~~~yDaViIAT  525 (1006)
T PRK12775        473 ---IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG-K---------------T--FTVPQLM----NDKGFDAVFLGV  525 (1006)
T ss_pred             ---CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC-C---------------c--cCHHHHh----hccCCCEEEEec
Confidence               112222356666666677778877  77775431 1               1  1111110    023599999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecC--------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEec
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIY--------------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSA  235 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~--------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~  235 (454)
                      |. ..|+.+++||.+. .+ +++..++              .......||+|+|||||++|+|+|..+.+.|. +|+++.
T Consensus       526 Ga-~~pr~l~IpG~~l-~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~  602 (1006)
T PRK12775        526 GA-GAPTFLGIPGEFA-GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVY  602 (1006)
T ss_pred             CC-CCCCCCCCCCcCC-CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            94 2588888998643 11 2222211              11223478999999999999999999999876 588888


Q ss_pred             ccCCcC-c-c---chhhhccCCCeEEcCceeEEec--CCc---EEEe-----------------CCC--EEeeceEEEcc
Q 044575          236 KSLNIS-E-G---LSKVISKHNNLHLHPQIDCLRE--DGR---VTFV-----------------DGC--WVTADTILYCT  286 (454)
Q Consensus       236 r~~~~~-~-~---~~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~-----------------dG~--~i~~D~vI~at  286 (454)
                      |+.... + .   +.....+.++++....+.++..  ++.   |.+.                 +|+  ++++|.||+|+
T Consensus       603 rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~Ai  682 (1006)
T PRK12775        603 RRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYAL  682 (1006)
T ss_pred             ecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECC
Confidence            765431 1 1   1122233456777777777642  232   2221                 222  58899999999


Q ss_pred             CcccCCcCCC--------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575          287 GYSYSFPFLD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL  350 (454)
Q Consensus       287 G~~~~~~~l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i  350 (454)
                      |+.|+..++.        +.|.+.+|+..+    .+.+. ++.|++|++||+..++ ....|..+++.+|..|
T Consensus       683 G~~p~~~~~~~~~gl~l~~~G~I~vd~~~v----~~~~~-Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I  750 (1006)
T PRK12775        683 GTKANPIITQSTPGLALNKWGNIAADDGKL----ESTQS-TNLPGVFAGGDIVTGGATVILAMGAGRRAARSI  750 (1006)
T ss_pred             CcCCChhhhhccCCcccCCCCcEEeCCCcc----ccCcC-CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHH
Confidence            9999976543        234455443111    11222 4679999999998654 3467888888888654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.7e-25  Score=188.86  Aligned_cols=266  Identities=20%  Similarity=0.259  Sum_probs=190.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC----CCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH----DVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~----~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      ..+|+|||+|||+.+||.++++...+.++||---    .+||+..                     +....-.|++||- 
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt---------------------TTT~veNfPGFPd-   65 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT---------------------TTTDVENFPGFPD-   65 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee---------------------eeeccccCCCCCc-
Confidence            4589999999999999999999999999999521    1233322                     1122233444432 


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                               -..+.++.+.+++.+.+|+..  | +-..|.+++....          .|++.+...      .+.+|.||
T Consensus        66 ---------gi~G~~l~d~mrkqs~r~Gt~--i-~tEtVskv~~ssk----------pF~l~td~~------~v~~~avI  117 (322)
T KOG0404|consen   66 ---------GITGPELMDKMRKQSERFGTE--I-ITETVSKVDLSSK----------PFKLWTDAR------PVTADAVI  117 (322)
T ss_pred             ---------ccccHHHHHHHHHHHHhhcce--e-eeeehhhccccCC----------CeEEEecCC------ceeeeeEE
Confidence                     235689999999999999987  4 4457888887643          677777543      68999999


Q ss_pred             EccCCCCCCCCCCCCCc-CC-ccceeEEeecCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--
Q 044575          168 VATGHYSYPRLPSIKGM-DK-WKRKQMHSHIYRVPEP--FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--  241 (454)
Q Consensus       168 iAtG~~~~p~~p~i~G~-~~-~~~~~~~~~~~~~~~~--~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--  241 (454)
                      +|||  +..+...+||. +. |..+.+.++..++...  |++|..+|||||-|++|-|..|...+++|++++|++.+.  
T Consensus       118 ~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs  195 (322)
T KOG0404|consen  118 LATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS  195 (322)
T ss_pred             Eecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH
Confidence            9999  66666667776 33 8888888888888765  899999999999999999999999999999999999873  


Q ss_pred             ccchhhhccCCC--eEEcCceeEEecCC----cEEEe---CC--CEEeeceEEEccCcccCCcCCCCCCceeeCCCCccc
Q 044575          242 EGLSKVISKHNN--LHLHPQIDCLREDG----RVTFV---DG--CWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGP  310 (454)
Q Consensus       242 ~~~~~~l~~~~~--i~~~~~v~~v~~~~----~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~  310 (454)
                      ..+.+...+..+  ++.+..+.+...++    .+.+.   .|  +.++++-++++.|-.|++.||+  |.+..|.+....
T Consensus       196 ~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~--gqve~d~~GYi~  273 (322)
T KOG0404|consen  196 KIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLK--GQVELDEDGYIV  273 (322)
T ss_pred             HHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhc--CceeeccCceEE
Confidence            334444444443  44444444443442    22222   23  4588999999999999999987  455555543322


Q ss_pred             ccCcccCCCCCCCceEeccccc
Q 044575          311 LYEHTFPPSLAPSLSFVGIPRK  332 (454)
Q Consensus       311 ~~~~~~~~~~~p~l~~iG~~~~  332 (454)
                      .-+.... ++.|++|+.||+.-
T Consensus       274 t~pgts~-TsvpG~FAAGDVqD  294 (322)
T KOG0404|consen  274 TRPGTSL-TSVPGVFAAGDVQD  294 (322)
T ss_pred             eccCccc-ccccceeeccccch
Confidence            2222222 46799999999873

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.7e-25  Score=200.75  Aligned_cols=320  Identities=16%  Similarity=0.191  Sum_probs=199.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC---C-----CCCcccccCCCCCCCCccccccccceecCCccccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN---H-----DVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYT   82 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~---~-----~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      -++|++|||||.+||+||++++..|.+|.++|--   +     .+||+|.+.+|+|.++++....-.-....+      .
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da------~   91 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDA------R   91 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHH------H
Confidence            3689999999999999999999999999999942   1     278999999999998655543221111111      1


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV  162 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (454)
                      .|.|...   +...-+.+..+.+-.++-....+-.-++.++.  ..|...+.-+.+.+    ..++...+.. ++...++
T Consensus        92 kyGW~~~---e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~----~h~I~at~~~-gk~~~~t  161 (503)
T KOG4716|consen   92 KYGWNVD---EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVD----PHKIKATNKK-GKERFLT  161 (503)
T ss_pred             hhCCCCc---cccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecc----cceEEEecCC-CceEEee
Confidence            1222220   11233456677777777666655432222222  22222222222222    3345554443 3466789


Q ss_pred             eCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--
Q 044575          163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI--  240 (454)
Q Consensus       163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~--  240 (454)
                      ++.+|||||  .+|+.|+|||..++   .+.|.+.......+| +.+|||+|+.|.|+|..|+.+|-.||+..|+-.+  
T Consensus       162 a~~fvIatG--~RPrYp~IpG~~Ey---~ITSDDlFsl~~~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG  235 (503)
T KOG4716|consen  162 AENFVIATG--LRPRYPDIPGAKEY---GITSDDLFSLPYEPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG  235 (503)
T ss_pred             cceEEEEec--CCCCCCCCCCceee---eecccccccccCCCC-ceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc
Confidence            999999999  99999999997664   344444433333345 4688999999999999999999999999997654  


Q ss_pred             -Cccchhhh----ccCC-CeEEc---CceeEEecCC-cEEEe---CCCE--EeeceEEEccCcccCCcCCC-CCCceeeC
Q 044575          241 -SEGLSKVI----SKHN-NLHLH---PQIDCLREDG-RVTFV---DGCW--VTADTILYCTGYSYSFPFLD-TKGIVVVD  304 (454)
Q Consensus       241 -~~~~~~~l----~~~~-~i~~~---~~v~~v~~~~-~v~~~---dG~~--i~~D~vI~atG~~~~~~~l~-~~g~i~v~  304 (454)
                       +..+.+.+    .+++ .+...   .+|+.+.... .|...   .++.  -++|.|+||.|+.+.+.-++ +.-.+.+|
T Consensus       236 FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n  315 (503)
T KOG4716|consen  236 FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTN  315 (503)
T ss_pred             ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeec
Confidence             23333322    2232 33333   3344443322 22222   2332  34999999999998876544 22334444


Q ss_pred             CCCcccccCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHcCC
Q 044575          305 DDRVGPLYEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       305 ~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~g~  353 (454)
                      +..- ..--+-+..++.|.+|++||....-  ..|+|.+.+|.+|+.+-+.
T Consensus       316 ~ks~-KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~g  365 (503)
T KOG4716|consen  316 EKSG-KIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAG  365 (503)
T ss_pred             ccCC-ccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcC
Confidence            3221 1111222335689999999987542  3489999999999766443

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.93  E-value=6.6e-25  Score=208.66  Aligned_cols=249  Identities=21%  Similarity=0.296  Sum_probs=183.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+.++|||+|++|..|+.++++.|.  +++++-+...+                  .|.  +...|+.....        
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~------------------pyd--r~~Ls~~~~~~--------  125 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL------------------PYD--RARLSKFLLTV--------  125 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC------------------ccc--chhcccceeec--------
Confidence            4689999999999999999999985  78888765432                  111  11111111100        


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                                .+.+.....++.+..+++  ..+++.|++++..            ..+|.+.+++     .+.|++||||
T Consensus       126 ----------~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~------------~K~l~~~~Ge-----~~kys~LilA  176 (478)
T KOG1336|consen  126 ----------GEGLAKRTPEFYKEKGIE--LILGTSVVKADLA------------SKTLVLGNGE-----TLKYSKLIIA  176 (478)
T ss_pred             ----------cccccccChhhHhhcCce--EEEcceeEEeecc------------ccEEEeCCCc-----eeecceEEEe
Confidence                      011111223355666777  8899999999977            5668888776     8999999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCC--------CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPE--------PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~--------~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      ||  +.|+.|++||.+...   ++  .+++.+        .-.++.|+|||+|.+|+|+|.+|...+.+||++++.+.+.
T Consensus       177 TG--s~~~~l~~pG~~~~n---v~--~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~  249 (478)
T KOG1336|consen  177 TG--SSAKTLDIPGVELKN---VF--YLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL  249 (478)
T ss_pred             ec--CccccCCCCCccccc---ee--eeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccch
Confidence            99  899999999987322   22  222221        1236789999999999999999999999999999998874


Q ss_pred             cc---------chhhhccC-CCeEEcCceeEEecC--C---cEEEeCCCEEeeceEEEccCcccCCcCCC------CCCc
Q 044575          242 EG---------LSKVISKH-NNLHLHPQIDCLRED--G---RVTFVDGCWVTADTILYCTGYSYSFPFLD------TKGI  300 (454)
Q Consensus       242 ~~---------~~~~l~~~-~~i~~~~~v~~v~~~--~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~------~~g~  300 (454)
                      +.         +.+.+++. +++++.+.+.++.++  +   .|.+.||+++++|+||+++|.+|+++++.      +.|.
T Consensus       250 ~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~  329 (478)
T KOG1336|consen  250 PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGG  329 (478)
T ss_pred             hhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCC
Confidence            42         22333333 478888988888643  2   57889999999999999999999999876      5678


Q ss_pred             eeeCCCCcccccCcccCCCCCCCceEeccccccc
Q 044575          301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI  334 (454)
Q Consensus       301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~  334 (454)
                      |.||+..+          +..|++|++||+...+
T Consensus       330 i~V~~~f~----------t~~~~VyAiGDva~fp  353 (478)
T KOG1336|consen  330 IKVDEFFQ----------TSVPNVYAIGDVATFP  353 (478)
T ss_pred             Eeehhcee----------eccCCcccccceeecc
Confidence            88888766          4579999999988653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.93  E-value=9.2e-25  Score=218.90  Aligned_cols=216  Identities=19%  Similarity=0.271  Sum_probs=157.1

Q ss_pred             HHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE--eCEEEEccCCCCCCCCCCCCCcC
Q 044575          108 KDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV--FDAVVVATGHYSYPRLPSIKGMD  185 (454)
Q Consensus       108 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~d~vViAtG~~~~p~~p~i~G~~  185 (454)
                      +++.+++++.  ++++++|++|+..            .++|.+.+..++.  ++.  ||+||||||  +.|+.|.+||++
T Consensus        51 ~~~~~~~gv~--~~~~~~V~~id~~------------~~~v~~~~~~~~~--~~~~~yd~lIiATG--~~p~~~~i~G~~  112 (427)
T TIGR03385        51 EVFIKKRGID--VKTNHEVIEVNDE------------RQTVVVRNNKTNE--TYEESYDYLILSPG--ASPIVPNIEGIN  112 (427)
T ss_pred             HHHHHhcCCe--EEecCEEEEEECC------------CCEEEEEECCCCC--EEecCCCEEEECCC--CCCCCCCCCCcC
Confidence            4455777877  7789999999865            3445555432122  455  999999999  899999999975


Q ss_pred             CccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Cccch--------hhhc
Q 044575          186 KWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEGLS--------KVIS  249 (454)
Q Consensus       186 ~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~~~--------~~l~  249 (454)
                      .-  ...+.......       ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+ .+.+.        +.+.
T Consensus       113 ~~--~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~  190 (427)
T TIGR03385       113 LD--IVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELK  190 (427)
T ss_pred             CC--CEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHH
Confidence            21  12222111100       1235689999999999999999999999999999998765 23222        2233


Q ss_pred             c-CCCeEEcCceeEEecCCc-EEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCCCCcccccCcccCCCC
Q 044575          250 K-HNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPLYEHTFPPSL  320 (454)
Q Consensus       250 ~-~~~i~~~~~v~~v~~~~~-v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~~~~~~~~~~  320 (454)
                      + .++++.+..|+++..++. +++.+|+++++|.||+|+|++|+.+++.       ++|.+.+|+..+          ++
T Consensus       191 ~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------t~  260 (427)
T TIGR03385       191 KHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQ----------TS  260 (427)
T ss_pred             HcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcE----------eC
Confidence            3 357888889999976654 3778899999999999999999987754       345677766544          34


Q ss_pred             CCCceEecccccc-----------cchhHHHHHHHHHHHHHcCC
Q 044575          321 APSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       321 ~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~  353 (454)
                      .|++|++||+...           +..+.|..||+++|++|.|.
T Consensus       261 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~  304 (427)
T TIGR03385       261 VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN  304 (427)
T ss_pred             CCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence            6999999998742           23468999999999999986

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.93  E-value=4.2e-24  Score=215.07  Aligned_cols=266  Identities=21%  Similarity=0.293  Sum_probs=176.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||+|+++|..|++.|++|+++|+.+.+||.+.+.                                    
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g------------------------------------  183 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG------------------------------------  183 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec------------------------------------
Confidence            45799999999999999999999999999999999999987631                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++..+..+.++++++.  +++++.|..-                  +...+.      ...||+||+||
T Consensus       184 ---ip~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~~------------------~~~~~~------~~~~D~vilAt  234 (467)
T TIGR01318       184 ---IPSFKLDKAVLSRRREIFTAMGIE--FHLNCEVGRD------------------ISLDDL------LEDYDAVFLGV  234 (467)
T ss_pred             ---CccccCCHHHHHHHHHHHHHCCCE--EECCCEeCCc------------------cCHHHH------HhcCCEEEEEe
Confidence               011111246666777777888877  7778766210                  111111      23699999999


Q ss_pred             CCCCCC-CCCCCCCcCCccceeEEeec-----------C---C--CCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEE
Q 044575          171 GHYSYP-RLPSIKGMDKWKRKQMHSHI-----------Y---R--VPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVH  232 (454)
Q Consensus       171 G~~~~p-~~p~i~G~~~~~~~~~~~~~-----------~---~--~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~  232 (454)
                      |  +.+ ..+++||.+...  +.+...           .   .  ......+++|+|||+|.+|+|.|..+.+.| ++||
T Consensus       235 G--a~~~~~~~i~g~~~~g--V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vt  310 (467)
T TIGR01318       235 G--TYRSMRGGLPGEDAPG--VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVT  310 (467)
T ss_pred             C--CCCCCcCCCCCcCCCC--cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence            9  554 345677765411  111100           0   0  011246799999999999999999999988 4799


Q ss_pred             EecccCCc-Cc----cchhhhccCCCeEEcCceeEEec--CCc---EEEe---------C---------C--CEEeeceE
Q 044575          233 LSAKSLNI-SE----GLSKVISKHNNLHLHPQIDCLRE--DGR---VTFV---------D---------G--CWVTADTI  282 (454)
Q Consensus       233 l~~r~~~~-~~----~~~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~---------d---------G--~~i~~D~v  282 (454)
                      ++.|++.. .+    .+.+...+.++++.+..+.++..  ++.   |++.         +         |  .++++|.|
T Consensus       311 vv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~V  390 (467)
T TIGR01318       311 CAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVV  390 (467)
T ss_pred             EEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEE
Confidence            99987653 11    22223334457777877777753  222   2231         1         2  25789999


Q ss_pred             EEccCcccCC-cCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHc
Q 044575          283 LYCTGYSYSF-PFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLS  351 (454)
Q Consensus       283 I~atG~~~~~-~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~  351 (454)
                      |+|+|++|+. .++..       .|.+.+|+.     |...+. ++.|++|++||+..+.. ...|..||+.+|.++.
T Consensus       391 i~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~-----~~~~~~-T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~  462 (467)
T TIGR01318       391 IMAFGFQPHAMPWLAGHGITLDSWGRIITGDV-----SYLPYQ-TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL  462 (467)
T ss_pred             EECCcCCCCccccccccCccCCCCCCEEeCCc-----cccCcc-CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999984 44432       234444421     111122 34699999999986553 3678999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.93  E-value=2.4e-24  Score=224.43  Aligned_cols=263  Identities=22%  Similarity=0.272  Sum_probs=171.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~------------------------------------  325 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG------------------------------------  325 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec------------------------------------
Confidence            46789999999999999999999999999999999998876532                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.+...+++.....+..+++++.  +++++.|.. +                 +.....      ...||+||+||
T Consensus       326 ---i~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~-----------------~~~~~~------~~~yD~vilAt  376 (604)
T PRK13984        326 ---IPSYRLPDEALDKDIAFIEALGVK--IHLNTRVGK-D-----------------IPLEEL------REKHDAVFLST  376 (604)
T ss_pred             ---CCcccCCHHHHHHHHHHHHHCCcE--EECCCEeCC-c-----------------CCHHHH------HhcCCEEEEEc
Confidence               001111144444445566777776  777776631 0                 000111      24699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCC---------CC-CCCCCCeEEEEcCCCCHHHHHHHHhhhcC------eEEEe
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYR---------VP-EPFRNEVVVVVGNSLSGQDISMELVEVAK------EVHLS  234 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~---------~~-~~~~~k~vvVVG~G~sg~e~A~~l~~~~~------~V~l~  234 (454)
                      |. ..|+.+++||.+...  +++...+.         .. ....+++|+|||||.+|+|+|..+++.+.      +|+++
T Consensus       377 Ga-~~~r~l~i~G~~~~g--v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~  453 (604)
T PRK13984        377 GF-TLGRSTRIPGTDHPD--VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT  453 (604)
T ss_pred             Cc-CCCccCCCCCcCCcC--eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence            94 236778888875321  12211110         01 11246899999999999999999998753      68886


Q ss_pred             cccCC---cCc---cchhhhccCCCeEEcCceeEEec-CC---cEEEe--------CC-----------CEEeeceEEEc
Q 044575          235 AKSLN---ISE---GLSKVISKHNNLHLHPQIDCLRE-DG---RVTFV--------DG-----------CWVTADTILYC  285 (454)
Q Consensus       235 ~r~~~---~~~---~~~~~l~~~~~i~~~~~v~~v~~-~~---~v~~~--------dG-----------~~i~~D~vI~a  285 (454)
                      .....   +..   .+.+...+.++++....+.++.. ++   .|.+.        +|           .++++|.||+|
T Consensus       454 ~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~a  533 (604)
T PRK13984        454 SLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEA  533 (604)
T ss_pred             ccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEe
Confidence            43211   111   12222334456666665655542 22   12221        12           36889999999


Q ss_pred             cCcccCCcCCCC---------CCceeeCCCCcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHc
Q 044575          286 TGYSYSFPFLDT---------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       286 tG~~~~~~~l~~---------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~  351 (454)
                      +|++|+.++|..         +|.+.+|++..          ++.|++|++||+...+....|..+|+.+|..|.
T Consensus       534 iG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~----------Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        534 IGQAPDYSYLPEELKSKLEFVRGRILTNEYGQ----------TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGID  598 (604)
T ss_pred             eCCCCChhhhhhhhccCccccCCeEEeCCCCc----------cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHH
Confidence            999999877642         24455554433          457999999999977666678889999887764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.93  E-value=6.6e-24  Score=230.75  Aligned_cols=283  Identities=16%  Similarity=0.168  Sum_probs=189.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+|||||||||+||.+|++.|++|+|||+++.+||.+.+...                                  
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~----------------------------------  207 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE----------------------------------  207 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc----------------------------------
Confidence            3579999999999999999999999999999999999998763210                                  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE-Ee-------ec-CCCeEEE
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK-SK-------EK-KADKVVE  160 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~-~~-------~~-~~~~~~~  160 (454)
                        ..+. .+..++...+.+.+..+ ++.  +..+++|..+.....          -..+. ..       .+ ..+...+
T Consensus       208 --~~~g-~~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~~----------v~~v~~~~~~~~~~~~~~~~~~~~~  272 (985)
T TIGR01372       208 --TIDG-KPAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHNT----------VGALERVTDHLDAPPKGVPRERLWR  272 (985)
T ss_pred             --ccCC-ccHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCCe----------EEEEEEeeeccccccCCccccceEE
Confidence              0000 11133322232323333 354  777888888753210          00010 00       00 0011236


Q ss_pred             EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEe---ecC-CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEec
Q 044575          161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHS---HIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHLSA  235 (454)
Q Consensus       161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~---~~~-~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~  235 (454)
                      +.||+||||||  +.++.|++||.+. .+. +..   ..+ .......+++|+|||+|++|+|+|..|++.| ..|++++
T Consensus       273 i~a~~VILATG--a~~r~~pipG~~~-pgV-~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~  348 (985)
T TIGR01372       273 IRAKRVVLATG--AHERPLVFANNDR-PGV-MLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIID  348 (985)
T ss_pred             EEcCEEEEcCC--CCCcCCCCCCCCC-CCc-EEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEc
Confidence            88999999999  8889888998654 221 111   111 1122346899999999999999999999999 5688988


Q ss_pred             ccCCcCccchhhhccC-CCeEEcCceeEEecCC---cEEEe----CCCEEeeceEEEccCcccCCcCCCCCC-ceeeCCC
Q 044575          236 KSLNISEGLSKVISKH-NNLHLHPQIDCLREDG---RVTFV----DGCWVTADTILYCTGYSYSFPFLDTKG-IVVVDDD  306 (454)
Q Consensus       236 r~~~~~~~~~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~----dG~~i~~D~vI~atG~~~~~~~l~~~g-~i~v~~~  306 (454)
                      +.+.+.+.+.+.+.+. ++++.+..+.++..++   .|++.    ++++++||.|++++|++|+..++...+ .+..|+.
T Consensus       349 ~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~  428 (985)
T TIGR01372       349 ARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAA  428 (985)
T ss_pred             cCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccc
Confidence            8776655555555444 5788888888887654   35555    456789999999999999988765433 3333432


Q ss_pred             CcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHc
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~  351 (454)
                      ..  .+   .+.++.|++|++|++........|..+++.+|..++
T Consensus       429 ~~--~~---~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       429 IA--AF---LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAAA  468 (985)
T ss_pred             cC--ce---ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHH
Confidence            21  11   112446999999999877777788899998887664

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.92  E-value=5.9e-24  Score=222.83  Aligned_cols=268  Identities=20%  Similarity=0.282  Sum_probs=173.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+.                                    
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g------------------------------------  369 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG------------------------------------  369 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec------------------------------------
Confidence            45899999999999999999999999999999999999987642                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.....+.++++++.  +++++.|..                .  ++....      ...||+||+||
T Consensus       370 ---ip~~~l~~~~~~~~~~~~~~~Gv~--~~~~~~v~~----------------~--i~~~~~------~~~~DavilAt  420 (654)
T PRK12769        370 ---IPAFKLDKSLLARRREIFSAMGIE--FELNCEVGK----------------D--ISLESL------LEDYDAVFVGV  420 (654)
T ss_pred             ---CCCccCCHHHHHHHHHHHHHCCeE--EECCCEeCC----------------c--CCHHHH------HhcCCEEEEeC
Confidence               011111245555556666777876  777776521                0  111111      23699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEee--------------cCCC-C-CCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEE
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSH--------------IYRV-P-EPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHL  233 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~--------------~~~~-~-~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l  233 (454)
                      |+ ..+..+.+||.+. .|. +...              .+.. + ....+++|+|||+|.+|+|+|..+.+.|. +|++
T Consensus       421 Ga-~~~~~l~i~g~~~-~Gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~  497 (654)
T PRK12769        421 GT-YRSMKAGLPNEDA-PGV-YDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTC  497 (654)
T ss_pred             CC-CCCCCCCCCCCCC-CCe-EEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            95 2344556677543 111 1100              0000 1 12468999999999999999999888875 7999


Q ss_pred             ecccCCc-Ccc----chhhhccCCCeEEcCceeEEec--CCc---EEEe---------C---------CC--EEeeceEE
Q 044575          234 SAKSLNI-SEG----LSKVISKHNNLHLHPQIDCLRE--DGR---VTFV---------D---------GC--WVTADTIL  283 (454)
Q Consensus       234 ~~r~~~~-~~~----~~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~---------d---------G~--~i~~D~vI  283 (454)
                      +.|++.. .+.    +.....+.++++....+.++..  ++.   |.+.         +         |+  ++++|.||
T Consensus       498 i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi  577 (654)
T PRK12769        498 AYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVI  577 (654)
T ss_pred             eEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEE
Confidence            9987653 221    2222233456777777777742  232   2331         1         22  58899999


Q ss_pred             EccCcccCC-cCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcC
Q 044575          284 YCTGYSYSF-PFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSG  352 (454)
Q Consensus       284 ~atG~~~~~-~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g  352 (454)
                      +|+|+.|+. .++..       +|.+.+|+..      +.+..++.|++|++||+..++. ...|..||+.+|..|..
T Consensus       578 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~------~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        578 MAFGFNPHGMPWLESHGVTVDKWGRIIADVES------QYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             ECccCCCCccccccccCCcCCCCCCEEeCCCc------ccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999984 34432       2333333210      0111245799999999986654 46889999999987753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.91  E-value=3.9e-23  Score=215.67  Aligned_cols=268  Identities=18%  Similarity=0.237  Sum_probs=175.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||+||++|..|++.|++|+|||+.+.+||.|.+.                                    
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g------------------------------------  352 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG------------------------------------  352 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc------------------------------------
Confidence            46899999999999999999999999999999999999998752                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.+...+.+..+++.  ++++++|..   .               ++..+.      ...||+||+||
T Consensus       353 ---ip~~~l~~~~~~~~~~~~~~~Gv~--~~~~~~v~~---~---------------~~~~~l------~~~~DaV~lat  403 (639)
T PRK12809        353 ---IPPFKLDKTVLSQRREIFTAMGID--FHLNCEIGR---D---------------ITFSDL------TSEYDAVFIGV  403 (639)
T ss_pred             ---CCcccCCHHHHHHHHHHHHHCCeE--EEcCCccCC---c---------------CCHHHH------HhcCCEEEEeC
Confidence               011111145556566677777876  777776521   0               111111      23699999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEe-----------ecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEE
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHS-----------HIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHL  233 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~-----------~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l  233 (454)
                      |+ ..+..+.+||.+. .+ +++.           .....     .....+|+|+|||+|.+|+|.|..+.+.| ++||+
T Consensus       404 Ga-~~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~  480 (639)
T PRK12809        404 GT-YGMMRADLPHEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC  480 (639)
T ss_pred             CC-CCCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            95 2344556777543 11 1110           00000     12346899999999999999999988887 58999


Q ss_pred             ecccCCc-Ccc----chhhhccCCCeEEcCceeEEec--CCcE---EE---e------C---------CC--EEeeceEE
Q 044575          234 SAKSLNI-SEG----LSKVISKHNNLHLHPQIDCLRE--DGRV---TF---V------D---------GC--WVTADTIL  283 (454)
Q Consensus       234 ~~r~~~~-~~~----~~~~l~~~~~i~~~~~v~~v~~--~~~v---~~---~------d---------G~--~i~~D~vI  283 (454)
                      +.|++.. .+.    +.....+.++++....+.++..  ++.|   .+   .      +         |+  ++++|.||
T Consensus       481 v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi  560 (639)
T PRK12809        481 AYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLI  560 (639)
T ss_pred             eeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEE
Confidence            9987644 121    2222234457777777777752  2222   11   1      1         22  57899999


Q ss_pred             EccCcccCC-cCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcC
Q 044575          284 YCTGYSYSF-PFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSG  352 (454)
Q Consensus       284 ~atG~~~~~-~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g  352 (454)
                      +|+|++|+. .++..       .|.+.+|+..     ...+. ++.|++|++||+..++. ...|..||+.+|+.|..
T Consensus       561 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-----~~~~~-Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        561 MAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG-----YLPTQ-THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             ECcCCCCCccccccccCcccCCCCCEEeCCCc-----ccCcc-cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999874 44432       2334443211     01112 45799999999986654 36788999999877653

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.91  E-value=6.6e-23  Score=207.18  Aligned_cols=268  Identities=23%  Similarity=0.265  Sum_probs=165.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||++|+++|..|++.|++|+|||+.+.+||...+.                                     
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-------------------------------------  185 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-------------------------------------  185 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-------------------------------------
Confidence            4799999999999999999999999999999999888876531                                     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                        .+.|....++.....+.++.+++.  +++++.|.. +                 +... .     ....||+||+|||
T Consensus       186 --ip~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~-----------------~~~~-~-----~~~~~d~VilAtG  237 (485)
T TIGR01317       186 --IPNMKLDKAIVDRRIDLLSAEGID--FVTNTEIGV-D-----------------ISAD-E-----LKEQFDAVVLAGG  237 (485)
T ss_pred             --CCCccCCHHHHHHHHHHHHhCCCE--EECCCEeCC-c-----------------cCHH-H-----HHhhCCEEEEccC
Confidence              011111234555555566667876  777776631 1                 0000 0     1346999999999


Q ss_pred             CCCC-CCCCCCCCcCCccceeEEeec--------CC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEe
Q 044575          172 HYSY-PRLPSIKGMDKWKRKQMHSHI--------YR-------VPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHLS  234 (454)
Q Consensus       172 ~~~~-p~~p~i~G~~~~~~~~~~~~~--------~~-------~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~  234 (454)
                        +. |..+.+||.+. .+. .....        ..       ......+|+|+|||+|.+|+|+|..+.+.+ ++|+++
T Consensus       238 --a~~~~~l~i~G~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv  313 (485)
T TIGR01317       238 --ATKPRDLPIPGREL-KGI-HYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQF  313 (485)
T ss_pred             --CCCCCcCCCCCcCC-CCc-EeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence              55 78888888653 211 11100        00       011246899999999999999988777765 579999


Q ss_pred             cccCCcCcc---------c------hhhhcc----CC--CeEEcCceeEEecC--Cc---EEE--------eCC------
Q 044575          235 AKSLNISEG---------L------SKVISK----HN--NLHLHPQIDCLRED--GR---VTF--------VDG------  274 (454)
Q Consensus       235 ~r~~~~~~~---------~------~~~l~~----~~--~i~~~~~v~~v~~~--~~---v~~--------~dG------  274 (454)
                      ++.+.....         +      ...+.+    .+  .++....+.++..+  +.   |.+        .+|      
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~  393 (485)
T TIGR01317       314 EIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVE  393 (485)
T ss_pred             EecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcccee
Confidence            877654211         1      011111    11  12334455555432  21   221        123      


Q ss_pred             ---C--EEeeceEEEccCcc-cCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHH
Q 044575          275 ---C--WVTADTILYCTGYS-YSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIA  347 (454)
Q Consensus       275 ---~--~i~~D~vI~atG~~-~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a  347 (454)
                         +  ++++|.||+|+|.. |+.+++...| +..+............. ++.|++|++||+..+. ....|..||+.+|
T Consensus       394 ~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~g-l~~~~~G~i~~~~~~~~-Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA  471 (485)
T TIGR01317       394 IPGSEEVFEADLVLLAMGFVGPEQILLDDFG-VKKTRRGNISAGYDDYS-TSIPGVFAAGDCRRGQSLIVWAINEGRKAA  471 (485)
T ss_pred             cCCceEEEECCEEEEccCcCCCccccccccC-cccCCCCCEEecCCCce-ECCCCEEEeeccCCCcHHHHHHHHHHHHHH
Confidence               2  58899999999996 8877765322 22222211111111112 4579999999998654 3457888888887


Q ss_pred             HHH
Q 044575          348 QLL  350 (454)
Q Consensus       348 ~~i  350 (454)
                      ..+
T Consensus       472 ~~i  474 (485)
T TIGR01317       472 AAV  474 (485)
T ss_pred             HHH
Confidence            654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.9e-23  Score=189.45  Aligned_cols=264  Identities=19%  Similarity=0.228  Sum_probs=199.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+||||||||-+||.+.+++|.+.-++-  +++||+-.-+-                        ....|      
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~------------------------~IENf------  257 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTM------------------------GIENF------  257 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecccc------------------------chhhe------
Confidence            35999999999999999999999999877764  35888755221                        11000      


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        -...+..+.++..-++.-.++|.+.  +..-.+.+++.+....      .+ -..|++.++.     .+.++.|||||
T Consensus       258 --Isv~~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~------~~-l~ev~l~nGa-----vLkaktvIlst  321 (520)
T COG3634         258 --ISVPETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVE------GG-LIEVELANGA-----VLKARTVILAT  321 (520)
T ss_pred             --eccccccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCC------Cc-cEEEEecCCc-----eeccceEEEec
Confidence              0112234567888888888888877  5445566777664321      11 6789998886     88999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--Cccchhhh
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI--SEGLSKVI  248 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~--~~~~~~~l  248 (454)
                      |  ++.+-.++||.++|..+....|..++...|+||+|+|||||+||+|.|..|+.....||+++-.+.+  +.-+.+.+
T Consensus       322 G--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl  399 (520)
T COG3634         322 G--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKL  399 (520)
T ss_pred             C--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHH
Confidence            9  7888888999999988888888889999999999999999999999999999999999999877766  22233333


Q ss_pred             cc--CCCeEEcCceeEEecCC----cEEEeC---CCE--EeeceEEEccCcccCCcCCC------CCCceeeCCCCcccc
Q 044575          249 SK--HNNLHLHPQIDCLREDG----RVTFVD---GCW--VTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPL  311 (454)
Q Consensus       249 ~~--~~~i~~~~~v~~v~~~~----~v~~~d---G~~--i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~  311 (454)
                      ..  ++.++.+...+++..++    .+.+.|   |++  ++-+-|++-.|-.||+.||.      +.|-|.+|...-   
T Consensus       400 ~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~---  476 (520)
T COG3634         400 RSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGE---  476 (520)
T ss_pred             hcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCC---
Confidence            33  24677888888888774    244443   443  45677999999999999975      456677776554   


Q ss_pred             cCcccCCCCCCCceEeccccccc
Q 044575          312 YEHTFPPSLAPSLSFVGIPRKLI  334 (454)
Q Consensus       312 ~~~~~~~~~~p~l~~iG~~~~~~  334 (454)
                             ++.|++|+.|++...+
T Consensus       477 -------TsvpGvFAAGD~T~~~  492 (520)
T COG3634         477 -------TNVPGVFAAGDCTTVP  492 (520)
T ss_pred             -------cCCCceeecCcccCCc
Confidence                   5679999999998653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.91  E-value=2.2e-24  Score=207.19  Aligned_cols=216  Identities=20%  Similarity=0.272  Sum_probs=129.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccccCCCCCCCCcccccccc-ceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS-LRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+|+++||.||++|+.|..|.+.+ .++..||+++  ...|+-.-..+...+..+.... .....|..-++|-.|-....
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~--~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP--SFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S--S--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC--CCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            479999999999999999999886 8999999876  4456643322322222222222 12222322222211110000


Q ss_pred             C----CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           90 K----GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        90 ~----~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                      .    -.....+|++.++.+|+++.+++++..  ++++++|++|+...+..     .. .|.|++.+. ++...++.+++
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~-----~~-~~~V~~~~~-~g~~~~~~ar~  150 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGD-----ED-LFRVTTRDS-DGDGETYRARN  150 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETT-----EE-EEEEEEEET-TS-EEEEEESE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCC-----cc-EEEEEEeec-CCCeeEEEeCe
Confidence            0    001245689999999999999998854  89999999999886431     01 599999763 35566899999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhhhcC--eEEEecccCCc
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP--EPFRNEVVVVVGNSLSGQDISMELVEVAK--EVHLSAKSLNI  240 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~--~~~~~k~vvVVG~G~sg~e~A~~l~~~~~--~V~l~~r~~~~  240 (454)
                      ||||||  ..|.+|..-........++|+.+|...  ...++++|+|||||.||.|++..|.+.+.  +|+|+.|++.+
T Consensus       151 vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  151 VVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             EEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             EEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            999999  899998532211123679999887432  35677999999999999999999999865  89999999876

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.90  E-value=1.3e-22  Score=202.13  Aligned_cols=161  Identities=22%  Similarity=0.272  Sum_probs=110.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHH--cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~--~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..++|+||||||||++||..|++  .|++|+|||+.+.+||.+.+.-                                 
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv---------------------------------   71 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV---------------------------------   71 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc---------------------------------
Confidence            45789999999999999999987  6999999999999999877420                                 


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                           .+.++....+...+.++....++.  ++.|..|-                  ..+++.+.      ...||+|||
T Consensus        72 -----aP~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg------------------~dvtl~~L------~~~yDaVIl  120 (491)
T PLN02852         72 -----APDHPETKNVTNQFSRVATDDRVS--FFGNVTLG------------------RDVSLSEL------RDLYHVVVL  120 (491)
T ss_pred             -----CCCcchhHHHHHHHHHHHHHCCeE--EEcCEEEC------------------ccccHHHH------hhhCCEEEE
Confidence                 122233355666666766665554  44454441                  11222221      236999999


Q ss_pred             ccCCCCCC-CCCCCCCcCCccceeEEeecC----------CC--CCCCCCCeEEEEcCCCCHHHHHHHHhhh--------
Q 044575          169 ATGHYSYP-RLPSIKGMDKWKRKQMHSHIY----------RV--PEPFRNEVVVVVGNSLSGQDISMELVEV--------  227 (454)
Q Consensus       169 AtG~~~~p-~~p~i~G~~~~~~~~~~~~~~----------~~--~~~~~~k~vvVVG~G~sg~e~A~~l~~~--------  227 (454)
                      |||  +.+ +.+.+||.+.- + ++...++          ..  .....+++|+|||+|++|+|+|..|.+.        
T Consensus       121 AtG--a~~~~~l~IpG~d~~-g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~td  196 (491)
T PLN02852        121 AYG--AESDRRLGIPGEDLP-G-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTD  196 (491)
T ss_pred             ecC--CCCCCCCCCCCCCCC-C-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccccccc
Confidence            999  554 66778886531 1 1222111          00  0123589999999999999999998764        


Q ss_pred             -------------cCeEEEecccCC
Q 044575          228 -------------AKEVHLSAKSLN  239 (454)
Q Consensus       228 -------------~~~V~l~~r~~~  239 (454)
                                   .++|+++.|+..
T Consensus       197 i~~~~l~~l~~~~~~~V~iv~RRg~  221 (491)
T PLN02852        197 IAEHALEALRGSSVRKVYLVGRRGP  221 (491)
T ss_pred             ccHHHHHHHhhCCCCEEEEEEcCCh
Confidence                         357999999875

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.90  E-value=9.9e-23  Score=210.38  Aligned_cols=262  Identities=24%  Similarity=0.295  Sum_probs=171.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||+||++|..|++.|++|++||+.+.+||.+.+.                                    
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g------------------------------------  179 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG------------------------------------  179 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec------------------------------------
Confidence            45799999999999999999999999999999999999987642                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEE-EEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV-EYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         .+.|.-..++.+.-.+.+.++++.  +.+++.+ .++...            .       .      ...||+||+|
T Consensus       180 ---ip~~~~~~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~------------~-------~------~~~~D~Vi~A  229 (564)
T PRK12771        180 ---IPAYRLPREVLDAEIQRILDLGVE--VRLGVRVGEDITLE------------Q-------L------EGEFDAVFVA  229 (564)
T ss_pred             ---CCCccCCHHHHHHHHHHHHHCCCE--EEeCCEECCcCCHH------------H-------H------HhhCCEEEEe
Confidence               011111134444444556667765  6666654 222110            0       0      1248999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc---
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIY-----RVPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI---  240 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~-----~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~---  240 (454)
                      ||.. .+..+.++|.+. .+. .+...+     .......+++|+|||+|.+|+|.+..+.+.+ ++|+++.|.+..   
T Consensus       230 tG~~-~~~~~~i~g~~~-~gv-~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~  306 (564)
T PRK12771        230 IGAQ-LGKRLPIPGEDA-AGV-LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP  306 (564)
T ss_pred             eCCC-CCCcCCCCCCcc-CCc-EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCC
Confidence            9942 233445676432 221 111111     1113446899999999999999999888887 779999887642   


Q ss_pred             --CccchhhhccCCCeEEcCceeEEecCC--c--E---EE------e-------CC--CEEeeceEEEccCcccCCcCCC
Q 044575          241 --SEGLSKVISKHNNLHLHPQIDCLREDG--R--V---TF------V-------DG--CWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       241 --~~~~~~~l~~~~~i~~~~~v~~v~~~~--~--v---~~------~-------dG--~~i~~D~vI~atG~~~~~~~l~  296 (454)
                        ...+.+.....++++....+.++..++  .  +   .+      .       +|  .++++|.||+|+|..|+.+++.
T Consensus       307 ~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~  386 (564)
T PRK12771        307 AHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE  386 (564)
T ss_pred             CCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh
Confidence              112223333445777777788875432  1  1   11      1       22  2688999999999999987776


Q ss_pred             C-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575          297 T-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL  350 (454)
Q Consensus       297 ~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i  350 (454)
                      .       .|.+.+|+..        +. ++.|++|++||+..++ ....|..||+.+|..|
T Consensus       387 ~~~gl~~~~G~i~vd~~~--------~~-ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i  439 (564)
T PRK12771        387 SVPGVEVGRGVVQVDPNF--------MM-TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI  439 (564)
T ss_pred             hccCcccCCCCEEeCCCC--------cc-CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence            3       2344444321        12 4579999999998644 4467888888887655

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.89  E-value=1.7e-22  Score=200.84  Aligned_cols=274  Identities=20%  Similarity=0.250  Sum_probs=194.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+++|||.|.+|..+..++++.   -++|++|-..+++                  -|...+...-        +     
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~------------------nY~Ri~Ls~v--------l-----   52 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP------------------NYNRILLSSV--------L-----   52 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc------------------cccceeeccc--------c-----
Confidence            5799999999999999999984   4699999887754                  1221111100        0     


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                           +.--+.+++.---.++.++.++.  ++.+.+|+.|++.            ..+|++..+.     .+.||+||+|
T Consensus        53 -----~~~~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~------------~k~V~t~~g~-----~~~YDkLilA  108 (793)
T COG1251          53 -----AGEKTAEDISLNRNDWYEENGIT--LYTGEKVIQIDRA------------NKVVTTDAGR-----TVSYDKLIIA  108 (793)
T ss_pred             -----CCCccHHHHhccchhhHHHcCcE--EEcCCeeEEeccC------------cceEEccCCc-----EeecceeEEe
Confidence                 00012345555556677888887  8899999999987            5678887776     8899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc----
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI----  240 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~----  240 (454)
                      ||  |.|++|++||.+.+.-...  ..+.+.     .....++.+|||||.-|+|.|..|.+.|-+|++++-.+.+    
T Consensus       109 TG--S~pfi~PiPG~~~~~v~~~--R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQ  184 (793)
T COG1251         109 TG--SYPFILPIPGSDLPGVFVY--RTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQ  184 (793)
T ss_pred             cC--ccccccCCCCCCCCCeeEE--ecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHh
Confidence            99  9999999999876442222  121111     0112355799999999999999999999999999988776    


Q ss_pred             -Ccc----chhhhccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeCCC
Q 044575          241 -SEG----LSKVISKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDD  306 (454)
Q Consensus       241 -~~~----~~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~  306 (454)
                       ++.    +...+.+. .+++++...+++...+   .+.|+||+.+++|.||+|+|++||..+-..     +-.|.+|+.
T Consensus       185 LD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~  264 (793)
T COG1251         185 LDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDY  264 (793)
T ss_pred             hhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeeccc
Confidence             111    22223333 3677777766665332   589999999999999999999999876321     224566776


Q ss_pred             CcccccCcccCCCCCCCceEeccccccc--ch---hHHHHHHHHHHHHHcCCCC
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKLI--GF---PFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~---~~a~~qa~~~a~~i~g~~~  355 (454)
                      .+          +++|++|++|.+....  .+   --+-.||+.+|.+++|...
T Consensus       265 mq----------TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~  308 (793)
T COG1251         265 MQ----------TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA  308 (793)
T ss_pred             cc----------ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence            66          6789999999887321  11   1344689999999988754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.86  E-value=6.6e-20  Score=171.27  Aligned_cols=323  Identities=17%  Similarity=0.222  Sum_probs=196.7

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccccCCCCCCCCccccccc-cceecCCccccccCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA-SLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   86 (454)
                      |++.+|++.||-||+.|+.|..|.+.+ .+...+||.+.  -.|+-....+...+..+... -.....|..-++|-+|-.
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~--F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~   79 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD--FSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH   79 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC--CCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence            445689999999999999999998875 78999999764  46765544444322222222 222233333333321111


Q ss_pred             CCCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE--EEEeecCCCeEEE
Q 044575           87 VLKK----GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV--VKSKEKKADKVVE  160 (454)
Q Consensus        87 ~~~~----~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~  160 (454)
                      ....    -.....++++.|+.+|+++.+.++   +.++|+++|.+|...+.+.        ...  +.+.++.     +
T Consensus        80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~--------~~~~~~~t~~~~-----~  143 (436)
T COG3486          80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDA--------VVRLFVVTANGT-----V  143 (436)
T ss_pred             HcchHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcc--------eeEEEEEcCCCc-----E
Confidence            0000    013356689999999999999988   3379999999885444321        222  3333332     7


Q ss_pred             EEeCEEEEccCCCCCCCCCCCCCcCCcc-ceeEEeecCCC-CCCCCCC-eEEEEcCCCCHHHHHHHHhhh----cCeEEE
Q 044575          161 EVFDAVVVATGHYSYPRLPSIKGMDKWK-RKQMHSHIYRV-PEPFRNE-VVVVVGNSLSGQDISMELVEV----AKEVHL  233 (454)
Q Consensus       161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~-~~~~~~~~~~~-~~~~~~k-~vvVVG~G~sg~e~A~~l~~~----~~~V~l  233 (454)
                      ++++.|||++|  ..|.+|+  -...+. ..++|+.+|.. ..+...| +|+|||+|.||.|+...|...    ..++.|
T Consensus       144 y~ar~lVlg~G--~~P~IP~--~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~w  219 (436)
T COG3486         144 YRARNLVLGVG--TQPYIPP--CFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNW  219 (436)
T ss_pred             EEeeeEEEccC--CCcCCCh--HHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCcccee
Confidence            89999999999  9999994  222222 47899998853 2233344 499999999999999998864    346899


Q ss_pred             ecccCCcCc-------------cchh------------hhcc------------------------------CCCeEEcC
Q 044575          234 SAKSLNISE-------------GLSK------------VISK------------------------------HNNLHLHP  258 (454)
Q Consensus       234 ~~r~~~~~~-------------~~~~------------~l~~------------------------------~~~i~~~~  258 (454)
                      +.|+..+.|             .+.+            ++.+                              ...+...+
T Consensus       220 itR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~  299 (436)
T COG3486         220 ITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLS  299 (436)
T ss_pred             eeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeecccc
Confidence            999987621             1100            0000                              01344566


Q ss_pred             ceeEEecCC--cEEEe-----C--CCEEeeceEEEccCcccCCc-CCC---------CCCceeeCCCCcccccCcccCCC
Q 044575          259 QIDCLREDG--RVTFV-----D--GCWVTADTILYCTGYSYSFP-FLD---------TKGIVVVDDDRVGPLYEHTFPPS  319 (454)
Q Consensus       259 ~v~~v~~~~--~v~~~-----d--G~~i~~D~vI~atG~~~~~~-~l~---------~~g~i~v~~~~~~~~~~~~~~~~  319 (454)
                      .|..++..+  .+.+.     +  .+++++|+||+||||+...| ||+         +.|...++.+...     .....
T Consensus       300 ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v-----~~~~~  374 (436)
T COG3486         300 EVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRV-----LWDGP  374 (436)
T ss_pred             ceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceee-----ecCCC
Confidence            777776443  23332     2  23678999999999997666 654         3344555443221     11001


Q ss_pred             CCCCceEeccccc-----ccchhHHHHHHHHHHHHHcCCCCCCC
Q 044575          320 LAPSLSFVGIPRK-----LIGFPFFESQAKWIAQLLSGKRTLPS  358 (454)
Q Consensus       320 ~~p~l~~iG~~~~-----~~~~~~a~~qa~~~a~~i~g~~~lp~  358 (454)
                      ....||+.|....     .+.+.++-.-|..++.-+.|+.+-|-
T Consensus       375 ~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~  418 (436)
T COG3486         375 GKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPV  418 (436)
T ss_pred             CcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCCCC
Confidence            1134565554331     12334555556666777788866443

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.76  E-value=1.7e-17  Score=173.51  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ...++|+||||||||++||..|++.|++|++||+.+..|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            34689999999999999999999999999999997655443

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.75  E-value=1.9e-17  Score=163.50  Aligned_cols=261  Identities=24%  Similarity=0.281  Sum_probs=163.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+||||||+||++|..|.+.|++|+++|+.+.+||...|.                                     
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-------------------------------------  165 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-------------------------------------  165 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-------------------------------------
Confidence            4899999999999999999999999999999999999998752                                     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                        .+.|....++.+...++.++.+++  ++.+++|-.                  .++....      ...||+|++|||
T Consensus       166 --IP~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~------------------~it~~~L------~~e~Dav~l~~G  217 (457)
T COG0493         166 --IPDFKLPKDILDRRLELLERSGVE--FKLNVRVGR------------------DITLEEL------LKEYDAVFLATG  217 (457)
T ss_pred             --CchhhccchHHHHHHHHHHHcCeE--EEEcceECC------------------cCCHHHH------HHhhCEEEEecc
Confidence              233344467777777788887865  777776631                  1222211      235799999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecC--------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecc
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIY--------------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAK  236 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~--------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r  236 (454)
                      . ..|+..++||.+.-.  +..+.+|              .......+|+|+|||+|.+++|++....+.|. +|+.+.+
T Consensus       218 ~-~~~~~l~i~g~d~~g--v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~  294 (457)
T COG0493         218 A-GKPRPLDIPGEDAKG--VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYR  294 (457)
T ss_pred             c-cCCCCCCCCCcCCCc--chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence            6 678878888875311  0011000              11122356999999999999999998888876 7888853


Q ss_pred             cCCc-----Cccchh--hh----ccCC---------CeEE--cCceeEEecCC--------------cEEEeCCC--EEe
Q 044575          237 SLNI-----SEGLSK--VI----SKHN---------NLHL--HPQIDCLREDG--------------RVTFVDGC--WVT  278 (454)
Q Consensus       237 ~~~~-----~~~~~~--~l----~~~~---------~i~~--~~~v~~v~~~~--------------~v~~~dG~--~i~  278 (454)
                      ...-     .+.+..  .+    .+..         .+..  +.+|..+.-..              .+-+ .|+  .++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v-~gs~~~~~  373 (457)
T COG0493         295 EDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV-IGTEKTDA  373 (457)
T ss_pred             ccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccc-cCceEEeh
Confidence            3222     000000  00    0000         1111  12333221000              0111 233  356


Q ss_pred             eceEEEccCcccCCcC---------CCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHH
Q 044575          279 ADTILYCTGYSYSFPF---------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQ  348 (454)
Q Consensus       279 ~D~vI~atG~~~~~~~---------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~  348 (454)
                      +|.|+.|+|+.++...         ++..|.+.+++...         .++.|++|+-|+...+. ..-.|..++|-+|+
T Consensus       374 aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak  444 (457)
T COG0493         374 ADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQ---------QTSIPGVFAGGDAVRGAALVVWAIAEGREAAK  444 (457)
T ss_pred             HHHHHHHhccCCCcccccccccccccCCCCceecccccc---------cccCCCeeeCceeccchhhhhhHHhhchHHHH
Confidence            9999999999987544         22345555555431         24568899999988742 33456666666665


Q ss_pred             HH
Q 044575          349 LL  350 (454)
Q Consensus       349 ~i  350 (454)
                      .+
T Consensus       445 ~i  446 (457)
T COG0493         445 AI  446 (457)
T ss_pred             hh
Confidence            44

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.75  E-value=6.9e-17  Score=165.15  Aligned_cols=288  Identities=21%  Similarity=0.236  Sum_probs=165.1

Q ss_pred             hhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCC
Q 044575            7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         7 ~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      +.....++|.|||+|||||+||..|-+.|+.|+|+||.+++||...|.                             .| 
T Consensus      1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-----------------------------ip- 1829 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-----------------------------IP- 1829 (2142)
T ss_pred             cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-----------------------------CC-
Confidence            334557899999999999999999999999999999999999998763                             11 


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           87 VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                               ..-...-+.+.--++..+-|++  +..|+++-+                  .|....-      .-.+|++
T Consensus      1830 ---------nmkldk~vv~rrv~ll~~egi~--f~tn~eigk------------------~vs~d~l------~~~~dai 1874 (2142)
T KOG0399|consen 1830 ---------NMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGK------------------HVSLDEL------KKENDAI 1874 (2142)
T ss_pred             ---------ccchhHHHHHHHHHHHHhhCce--EEeeccccc------------------cccHHHH------hhccCeE
Confidence                     1111133455555566666766  555555421                  1222211      3468999


Q ss_pred             EEccCCCCCCCCCCCCCcCC----ccceeEEee--------cCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe-EEE
Q 044575          167 VVATGHYSYPRLPSIKGMDK----WKRKQMHSH--------IYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-VHL  233 (454)
Q Consensus       167 ViAtG~~~~p~~p~i~G~~~----~~~~~~~~~--------~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~-V~l  233 (454)
                      |+|+|+ ..|+-.++||-+.    |.-..+|..        .--.....+||+|+|||||-+|-|+...-.++|.+ |--
T Consensus      1875 v~a~gs-t~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n 1953 (2142)
T KOG0399|consen 1875 VLATGS-TTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGN 1953 (2142)
T ss_pred             EEEeCC-CCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecc
Confidence            999996 5788778888764    211112211        11112345899999999999999998887777654 433


Q ss_pred             ecccCCc---------Cccchhhhc-c---------CC------CeE------------EcCceeEEe----cCCcEEEe
Q 044575          234 SAKSLNI---------SEGLSKVIS-K---------HN------NLH------------LHPQIDCLR----EDGRVTFV  272 (454)
Q Consensus       234 ~~r~~~~---------~~~~~~~l~-~---------~~------~i~------------~~~~v~~v~----~~~~v~~~  272 (454)
                      ++--+.+         -|.+...++ +         ++      .+.            ..-.+.+++    +.+...+.
T Consensus      1954 ~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ 2033 (2142)
T KOG0399|consen 1954 FELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMK 2033 (2142)
T ss_pred             eeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEE
Confidence            3222221         111111110 0         00      011            111122222    11223232


Q ss_pred             ----CCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCc-ccccCcccCCCCCCCceEecccccccch-----hHHHHH
Q 044575          273 ----DGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRV-GPLYEHTFPPSLAPSLSFVGIPRKLIGF-----PFFESQ  342 (454)
Q Consensus       273 ----dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~-~~~~~~~~~~~~~p~l~~iG~~~~~~~~-----~~a~~q  342 (454)
                          +.+.++||+||+|.||.-.-+-+.+...+..|.... ...++. |.. ..+.+|+.|+|+.+..+     +-....
T Consensus      2034 ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~-y~t-~v~~vfaagdcrrgqslvvwai~egrq~ 2111 (2142)
T KOG0399|consen 2034 EINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDS-YST-DVAKVFAAGDCRRGQSLVVWAIQEGRQA 2111 (2142)
T ss_pred             EcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCcc-ccc-cccceeecccccCCceEEEEEehhhhHH
Confidence                234588999999999984433333223333333111 112222 443 46999999999977543     233333


Q ss_pred             HHHHHHHHcCCCCCCCHHHH
Q 044575          343 AKWIAQLLSGKRTLPSWDQM  362 (454)
Q Consensus       343 a~~~a~~i~g~~~lp~~~~~  362 (454)
                      |+-+-..+.|.-.+|...+.
T Consensus      2112 a~~vd~~~~~~t~l~~~ggi 2131 (2142)
T KOG0399|consen 2112 ARQVDELMGGTTDLPGDGGI 2131 (2142)
T ss_pred             HHHHHHHhCCcccCCCCCch
Confidence            44444455666667765433

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.74  E-value=7.3e-17  Score=161.29  Aligned_cols=268  Identities=21%  Similarity=0.267  Sum_probs=172.9

Q ss_pred             EEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           15 VCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        15 VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      ++|||+|++|+++|..+++.  +.+++++.+.....    +..|.            +.......               
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~----~~~~~------------~~~~~~~~---------------   49 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS----YYRCP------------LSLYVGGG---------------   49 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC----CCCCc------------cchHHhcc---------------
Confidence            58999999999999999885  46888888765431    11110            00000000               


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                          ....+.+..... +....++.  +..+++|.+++..            ..+|.+.++      ++.||++|+||| 
T Consensus        50 ----~~~~~~~~~~~~-~~~~~~i~--~~~~~~v~~id~~------------~~~v~~~~g------~~~yd~LvlatG-  103 (415)
T COG0446          50 ----IASLEDLRYPPR-FNRATGID--VRTGTEVTSIDPE------------NKVVLLDDG------EIEYDYLVLATG-  103 (415)
T ss_pred             ----cCCHHHhcccch-hHHhhCCE--EeeCCEEEEecCC------------CCEEEECCC------cccccEEEEcCC-
Confidence                000011111111 11344555  7888999999876            445666654      678999999999 


Q ss_pred             CCCCCCCCCCCcCCccceeEEeecCCCCCCC-----CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc---
Q 044575          173 YSYPRLPSIKGMDKWKRKQMHSHIYRVPEPF-----RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL---  244 (454)
Q Consensus       173 ~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~-----~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~---  244 (454)
                       +.|..++  +.  ................+     ..++++|||+|+.|+|+|..+.+.|.+|++++..+++.+.+   
T Consensus       104 -a~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~  178 (415)
T COG0446         104 -ARPRPPP--IS--DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDP  178 (415)
T ss_pred             -CcccCCC--cc--ccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhH
Confidence             8888775  11  11111111111111111     13799999999999999999999999999999998885443   


Q ss_pred             --hhh----hccC-CCeEEcCceeEEecCCc------EEEeCCCEEeeceEEEccCcccCCcCCCC--------CCceee
Q 044575          245 --SKV----ISKH-NNLHLHPQIDCLREDGR------VTFVDGCWVTADTILYCTGYSYSFPFLDT--------KGIVVV  303 (454)
Q Consensus       245 --~~~----l~~~-~~i~~~~~v~~v~~~~~------v~~~dG~~i~~D~vI~atG~~~~~~~l~~--------~g~i~v  303 (454)
                        .+.    +..+ ++++.+..+.++.....      +...++..+++|.++.++|.+|+..+...        .|.+.+
T Consensus       179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v  258 (415)
T COG0446         179 EVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLV  258 (415)
T ss_pred             HHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEE
Confidence              222    2333 35778888888875431      57788999999999999999998554332        234555


Q ss_pred             CCCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCC
Q 044575          304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~  353 (454)
                      |+....        . ..+++|++|++...           ..++.+..|++.++.++.+.
T Consensus       259 ~~~~~~--------~-~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~  310 (415)
T COG0446         259 DERGGT--------S-KDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA  310 (415)
T ss_pred             cccccc--------C-CCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence            554441        1 25788888885532           22458888999999998875

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.73  E-value=3.6e-16  Score=153.43  Aligned_cols=44  Identities=32%  Similarity=0.443  Sum_probs=39.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHH-HcCCcEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELR-KEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~-~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      ..++|+||||||||++||.+|+ +.|++|+|||+.+.+||.+++.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            3578999999999999999875 5699999999999999999863

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.71  E-value=3.8e-16  Score=144.17  Aligned_cols=164  Identities=24%  Similarity=0.316  Sum_probs=106.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      ...++|||||+||||+.+|..|+++  +++|.|+|+.+.++|..+|.-.                               
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-------------------------------   66 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-------------------------------   66 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-------------------------------
Confidence            3457999999999999999999984  6899999999988888775411                               


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                             |+.|.-..+..-+.+.+++....  +.-|.+|                  .-.+++..-      +-.||.||
T Consensus        67 -------PDHpEvKnvintFt~~aE~~rfs--f~gNv~v------------------G~dvsl~eL------~~~ydavv  113 (468)
T KOG1800|consen   67 -------PDHPEVKNVINTFTKTAEHERFS--FFGNVKV------------------GRDVSLKEL------TDNYDAVV  113 (468)
T ss_pred             -------CCCcchhhHHHHHHHHhhccceE--EEeccee------------------cccccHHHH------hhcccEEE
Confidence                   11111123334444445543322  2223332                  111233221      44699999


Q ss_pred             EccCCCCCCCCCCCCCcCCccceeEEeec----CC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhh---------
Q 044575          168 VATGHYSYPRLPSIKGMDKWKRKQMHSHI----YR-------VPEPFRNEVVVVVGNSLSGQDISMELVEV---------  227 (454)
Q Consensus       168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~----~~-------~~~~~~~k~vvVVG~G~sg~e~A~~l~~~---------  227 (454)
                      ||.|+ ..++..+|||.+. .+ ++.+..    |.       ..-++.+.+|+|||.|+.++|+|..|...         
T Consensus       114 LaYGa-~~dR~L~IPGe~l-~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TD  190 (468)
T KOG1800|consen  114 LAYGA-DGDRRLDIPGEEL-SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTD  190 (468)
T ss_pred             EEecC-CCCcccCCCCccc-cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccC
Confidence            99996 5678889999763 11 111111    11       12245688999999999999999988742         


Q ss_pred             -------------cCeEEEecccCCc
Q 044575          228 -------------AKEVHLSAKSLNI  240 (454)
Q Consensus       228 -------------~~~V~l~~r~~~~  240 (454)
                                   -++|+++.|+...
T Consensus       191 i~~~aL~~L~~s~VkdV~lvgRRgp~  216 (468)
T KOG1800|consen  191 IPKLALNLLKRSNVKDVKLVGRRGPL  216 (468)
T ss_pred             CcHHHHhhhhcCCcceEEEEeccCcc
Confidence                         1369999998765

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.63  E-value=2.4e-13  Score=131.24  Aligned_cols=203  Identities=20%  Similarity=0.274  Sum_probs=132.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcccccc--CCCC--
Q 044575           13 KNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGY--TDFP--   85 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--   85 (454)
                      ++|+|||+|++|+.+|.+|.+.   ...|.|||+.+.+|+..-|....+          ..+.|+|..-|+.  +|.|  
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p----------~~~lNv~a~~mS~~~pD~p~~   71 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEP----------EHLLNVPAARMSAFAPDIPQD   71 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCc----------hhhhccccccccccCCCCchH
Confidence            6899999999999999999986   224999999999998888765433          2333444433332  2211  


Q ss_pred             -----------C--CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC----ccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575           86 -----------F--VLKKGRDVRRFPGHKELWLYLKDFCQRFGLR----EMIRFNTRVEYVGMLDCGELIIGNDLIKWVV  148 (454)
Q Consensus        86 -----------~--~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~----~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v  148 (454)
                                 .  +...+.+...|+++.-+-+|+.++...+-..    ......++++++.+.++..        .|.+
T Consensus        72 F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~--------~~~~  143 (474)
T COG4529          72 FVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAG--------GYLV  143 (474)
T ss_pred             HHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCc--------eEEE
Confidence                       0  1111236788999999999998887765211    1233456667766664332        7888


Q ss_pred             EEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCC---CCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575          149 KSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP---EPFRNEVVVVVGNSLSGQDISMELV  225 (454)
Q Consensus       149 ~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~---~~~~~k~vvVVG~G~sg~e~A~~l~  225 (454)
                      +..++.     +..+|-+|+|||+ +.|..+. -..+......+.+..|...   .-..+.+|+|+|+|.+-+|....+.
T Consensus       144 ~~~~g~-----~~~ad~~Vlatgh-~~~~~~~-~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~  216 (474)
T COG4529         144 TTADGP-----SEIADIIVLATGH-SAPPADP-AARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLR  216 (474)
T ss_pred             ecCCCC-----eeeeeEEEEeccC-CCCCcch-hhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHh
Confidence            888776     7789999999996 3333222 1111111222333333221   1123457999999999999999999


Q ss_pred             hhcC--eEEEecccCCc
Q 044575          226 EVAK--EVHLSAKSLNI  240 (454)
Q Consensus       226 ~~~~--~V~l~~r~~~~  240 (454)
                      +.|.  .||+++|+...
T Consensus       217 ~~gh~g~It~iSRrGl~  233 (474)
T COG4529         217 RRGHKGPITAISRRGLV  233 (474)
T ss_pred             ccCCccceEEEeccccc
Confidence            9764  59999998743

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.62  E-value=8.8e-16  Score=142.98  Aligned_cols=296  Identities=15%  Similarity=0.228  Sum_probs=172.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCC-----
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTD-----   83 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   83 (454)
                      .+...+|||+|.+..++++..+..  +.+|.+|...+.+                    ++++.-.++++..+.|     
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepel--------------------PYmRPPLSKELW~~~dpn~~k  236 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL--------------------PYMRPPLSKELWWYGDPNSAK  236 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccC--------------------cccCCCcchhceecCCCChhh
Confidence            345689999999999999888765  5688888866543                    1111111111111111     


Q ss_pred             -CCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           84 -FPFVLKKGR-------DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        84 -~~~~~~~~~-------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                       +.|....|.       ....|.+.+++-...     +=|+.  +..+.+|.+|+..            ...|+++++. 
T Consensus       237 ~lrfkqwsGkeRsiffepd~FfvspeDLp~~~-----nGGvA--vl~G~kvvkid~~------------d~~V~LnDG~-  296 (659)
T KOG1346|consen  237 KLRFKQWSGKERSIFFEPDGFFVSPEDLPKAV-----NGGVA--VLRGRKVVKIDEE------------DKKVILNDGT-  296 (659)
T ss_pred             heeecccCCccceeEecCCcceeChhHCcccc-----cCceE--EEeccceEEeecc------------cCeEEecCCc-
Confidence             111111111       112233333322111     11333  5667788888765            4568888876 


Q ss_pred             CeEEEEEeCEEEEccCCCCCCCCCC-CCCcC-CccceeEEeecCCCCCCC--------CCCeEEEEcCCCCHHHHHHHHh
Q 044575          156 DKVVEEVFDAVVVATGHYSYPRLPS-IKGMD-KWKRKQMHSHIYRVPEPF--------RNEVVVVVGNSLSGQDISMELV  225 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~p~~p~-i~G~~-~~~~~~~~~~~~~~~~~~--------~~k~vvVVG~G~sg~e~A~~l~  225 (454)
                          ++.||+++||||  ..|+-.+ +.... +...++.   .|+.+.+|        .-++|.|||+|..|.|+|+.|.
T Consensus       297 ----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit---~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~  367 (659)
T KOG1346|consen  297 ----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKIT---YFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLK  367 (659)
T ss_pred             ----EeehhheeeecC--cCcccchhhhhcCHHhhhhee---EEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHH
Confidence                899999999999  8887543 22111 1111221   12222222        2378999999999999999999


Q ss_pred             hh----cCeEEEecccCCc-Cccchhhh---------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCc
Q 044575          226 EV----AKEVHLSAKSLNI-SEGLSKVI---------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       226 ~~----~~~V~l~~r~~~~-~~~~~~~l---------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~  288 (454)
                      +.    |.+|+-+...... ..-+.+.+         ...+.++.+..|+.+....   .+.++||.++..|+||.|+|-
T Consensus       368 rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~  447 (659)
T KOG1346|consen  368 RKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE  447 (659)
T ss_pred             HhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence            74    5677776554332 11122222         2224667777777664322   577889999999999999999


Q ss_pred             ccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc----------hhHHHHHHHHHHHHHcCCCCCCC
Q 044575          289 SYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG----------FPFFESQAKWIAQLLSGKRTLPS  358 (454)
Q Consensus       289 ~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~----------~~~a~~qa~~~a~~i~g~~~lp~  358 (454)
                      .||.++... +.+.+|...-+-........  ..|+|+.|+..+...          +-.|...+|.+..+|+|..+ |.
T Consensus       448 ePN~ela~~-sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak-py  523 (659)
T KOG1346|consen  448 EPNSELAEA-SGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK-PY  523 (659)
T ss_pred             CCchhhccc-ccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceecccccccccC-Cc
Confidence            999887654 45666664432111112221  268888888765321          22455567777777777543 44


Q ss_pred             H
Q 044575          359 W  359 (454)
Q Consensus       359 ~  359 (454)
                      .
T Consensus       524 ~  524 (659)
T KOG1346|consen  524 K  524 (659)
T ss_pred             c
Confidence            3

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.57  E-value=2.1e-14  Score=135.03  Aligned_cols=150  Identities=25%  Similarity=0.371  Sum_probs=107.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCC---ccccc----cC--
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSP---REIMG----YT--   82 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~--   82 (454)
                      .+||+|||||||||.||..+++.|.+|+|||+.+.+|-.....+....+..++..+..+..+.|   +.+.+    |.  
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~   82 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE   82 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence            4799999999999999999999999999999999987444333333333333344555566666   22221    11  


Q ss_pred             -------CCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575           83 -------DFPFVLKKGRDVRRFPG---HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE  152 (454)
Q Consensus        83 -------~~~~~~~~~~~~~~~~~---~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~  152 (454)
                             .+......+.....||.   ...+.+-+..-+++.++.  ++++++|.+|+..+.          .+.+.+.+
T Consensus        83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~~----------~f~l~t~~  150 (408)
T COG2081          83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDDS----------GFRLDTSS  150 (408)
T ss_pred             HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecCc----------eEEEEcCC
Confidence                   11111112234455554   668888888889999998  999999999998863          78898888


Q ss_pred             cCCCeEEEEEeCEEEEccCCCCCCCC
Q 044575          153 KKADKVVEEVFDAVVVATGHYSYPRL  178 (454)
Q Consensus       153 ~~~~~~~~~~~d~vViAtG~~~~p~~  178 (454)
                      +.     ++.+|.||||||..|.|.+
T Consensus       151 g~-----~i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         151 GE-----TVKCDSLILATGGKSWPKL  171 (408)
T ss_pred             CC-----EEEccEEEEecCCcCCCCC
Confidence            75     7999999999997777754

>PRK09897 hypothetical protein; Provisional

Probab=99.57  E-value=4.3e-14  Score=142.87  Aligned_cols=198  Identities=20%  Similarity=0.297  Sum_probs=119.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecC-----CccccccCCC-
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS-----PREIMGYTDF-   84 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-   84 (454)
                      ++|+||||||+|+++|.+|.+.+  .+|+|||++..+|..+.|....++.        .+..|.     |.....|..+ 
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~--------~L~~N~~~~~~p~~~~~f~~Wl   73 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSK--------MMLANIASIEIPPIYCTYLEWL   73 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChH--------HHHhcccccccCCChHHHHHHh
Confidence            58999999999999999998864  5899999998899655544322111        001110     0000111111 


Q ss_pred             -----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCCccEEeCeEEEEEEEcCCCccccCCcCCcE
Q 044575           85 -----------PFVLKKGRDVRRFPGHKELWLYLKDFCQRF-------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKW  146 (454)
Q Consensus        85 -----------~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~  146 (454)
                                 .... .......|+++..+-+|+++..+.+       +....++.+++|++|+..++          .|
T Consensus        74 ~~~~~~~~~~~g~~~-~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~----------g~  142 (534)
T PRK09897         74 QKQEDSHLQRYGVKK-ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA----------GV  142 (534)
T ss_pred             hhhhHHHHHhcCCcc-eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC----------EE
Confidence                       0000 0002346888887777777765543       21223566889999987643          68


Q ss_pred             EEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCc-cceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575          147 VVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKW-KRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELV  225 (454)
Q Consensus       147 ~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~-~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~  225 (454)
                      .|++.+++    ..+.+|+||+|||+ ..|..+  ++...+ ....  ...  ......+.+|+|+|.|.|++|++..|.
T Consensus       143 ~V~t~~gg----~~i~aD~VVLAtGh-~~p~~~--~~~~~yi~~pw--~~~--~~~~i~~~~V~I~GtGLt~iD~v~~Lt  211 (534)
T PRK09897        143 MLATNQDL----PSETFDLAVIATGH-VWPDEE--EATRTYFPSPW--SGL--MEAKVDACNVGIMGTSLSGLDAAMAVA  211 (534)
T ss_pred             EEEECCCC----eEEEcCEEEECCCC-CCCCCC--hhhccccCCCC--cch--hhcCCCCCeEEEECCCHHHHHHHHHHH
Confidence            88775431    16789999999996 233322  111111 0000  000  011224689999999999999999988


Q ss_pred             hhc---------------------CeEEEecccCCc
Q 044575          226 EVA---------------------KEVHLSAKSLNI  240 (454)
Q Consensus       226 ~~~---------------------~~V~l~~r~~~~  240 (454)
                      ..+                     .+|++++|+..+
T Consensus       212 ~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~  247 (534)
T PRK09897        212 IQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGIL  247 (534)
T ss_pred             hcCCceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence            552                     268888887653

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.57  E-value=1.7e-15  Score=135.79  Aligned_cols=153  Identities=27%  Similarity=0.331  Sum_probs=87.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRD   93 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (454)
                      ||+|||||+||++||.+|++.+.+++++|+.+..+....            ..+.......                   
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~------------~~~~~~~~~~-------------------   49 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG------------CIPSPLLVEI-------------------   49 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS------------HHHHHHHHHH-------------------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc------------cccccccccc-------------------
Confidence            699999999999999999999999999988764321100            0000000000                   


Q ss_pred             CCCCCCHHHHH--H--HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           94 VRRFPGHKELW--L--YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        94 ~~~~~~~~~~~--~--yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         ........  +  .+.+...+.++.  +.++++|.+|+.....-   . .. .+.+.....  +...++.||+||||
T Consensus        50 ---~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~---~-~~-~~~~~~~~~--~~~~~~~~d~lviA  117 (201)
T PF07992_consen   50 ---APHRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPESKRV---V-CP-AVTIQVVET--GDGREIKYDYLVIA  117 (201)
T ss_dssp             ---HHHHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEESTTEE---E-ET-CEEEEEEET--TTEEEEEEEEEEEE
T ss_pred             ---cccccccccccccccccccccceEE--Eeecccccccccccccc---c-cC-cccceeecc--CCceEecCCeeeec
Confidence               00000111  0  222222445655  66889999998765310   0 00 122322221  23458999999999


Q ss_pred             cCCCCCCCCCCCCCcCC--ccceeEEeecCCCCCCCCCCeEEEEc
Q 044575          170 TGHYSYPRLPSIKGMDK--WKRKQMHSHIYRVPEPFRNEVVVVVG  212 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~--~~~~~~~~~~~~~~~~~~~k~vvVVG  212 (454)
                      ||  +.|+.|.+||.+.  +.....++..+...... .++|+|||
T Consensus       118 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~v~VvG  159 (201)
T PF07992_consen  118 TG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLES-PKRVAVVG  159 (201)
T ss_dssp             ST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSST-TSEEEEES
T ss_pred             Cc--cccceeecCCCccccccccccccccccccccc-cccccccc
Confidence            99  8899999999732  11223333333222222 34999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=121.47  Aligned_cols=154  Identities=17%  Similarity=0.292  Sum_probs=94.5

Q ss_pred             cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      +.+|||||.||.+||..|+..  ..+|+++..++.+-.+-+                                       
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn---------------------------------------   41 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN---------------------------------------   41 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh---------------------------------------
Confidence            368999999999999999986  568999988653311111                                       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCcc------EEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREM------IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~------i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                              ...+.+    |.++|++++.      -.|..-+.+|...+..         ...+.+.++.     .+.|++
T Consensus        42 --------~~~i~~----ylekfdv~eq~~~elg~~f~~~~~~v~~~~s~---------ehci~t~~g~-----~~ky~k   95 (334)
T KOG2755|consen   42 --------YQKIGQ----YLEKFDVKEQNCHELGPDFRRFLNDVVTWDSS---------EHCIHTQNGE-----KLKYFK   95 (334)
T ss_pred             --------HHHHHH----HHHhcCccccchhhhcccHHHHHHhhhhhccc---------cceEEecCCc-----eeeEEE
Confidence                    022333    3333433310      0111112222222211         4567777776     889999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |++|||  .+|..- .+|.+.   +++--++-...     ...+.|.|+|+|.|-+++|++.++...  .|+|....+.+
T Consensus        96 KOG~tg--~kPklq-~E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~~I  167 (334)
T KOG2755|consen   96 LCLCTG--YKPKLQ-VEGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDEGI  167 (334)
T ss_pred             EEEecC--CCccee-ecCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecchhh
Confidence            999999  888754 233221   12222221111     123679999999999999999999876  68887776655

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.45  E-value=7.3e-14  Score=137.12  Aligned_cols=148  Identities=35%  Similarity=0.520  Sum_probs=81.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC--------cccccCC-CCCCCCcc-------ccccccceecCCc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG--------GQWLYDP-NTDQTEVH-------SSVYASLRLTSPR   76 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G--------G~w~~~~-~~~~~~~~-------~~~~~~~~~~~~~   76 (454)
                      |||+|||||||||.||..|++.|.+|+|+||++.+|        |.|+.++ ........       ..+...+....+.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            689999999999999999999999999999999986        6676654 21111000       0011111111111


Q ss_pred             ccccc---CCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           77 EIMGY---TDFPFVLKKGRDVRRFP---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        77 ~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      .+..|   -+.+...  ..+...||   ...++.+-|...+++.++.  ++++++|.+|...++.         .|.|.+
T Consensus        81 d~~~ff~~~Gv~~~~--~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~---------~f~v~~  147 (409)
T PF03486_consen   81 DLIAFFEELGVPTKI--EEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDG---------VFGVKT  147 (409)
T ss_dssp             HHHHHHHHTT--EEE---STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTE---------EEEEEE
T ss_pred             HHHHHHHhcCCeEEE--cCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCc---------eeEeec
Confidence            11111   1122211  11223333   4567888888888999988  9999999999887653         588888


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYPRL  178 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p~~  178 (454)
                      .+..     ++.+|+||||||..+.|..
T Consensus       148 ~~~~-----~~~a~~vILAtGG~S~p~~  170 (409)
T PF03486_consen  148 KNGG-----EYEADAVILATGGKSYPKT  170 (409)
T ss_dssp             TTTE-----EEEESEEEE----SSSGGG
T ss_pred             cCcc-----cccCCEEEEecCCCCcccc
Confidence            4333     7899999999997665543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.44  E-value=9.8e-12  Score=118.68  Aligned_cols=41  Identities=41%  Similarity=0.669  Sum_probs=38.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      .++++|||||+|||+||+.|++.|++|+++||++.+||...
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma  164 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA  164 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence            47899999999999999999999999999999999999854

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.37  E-value=1e-11  Score=106.28  Aligned_cols=131  Identities=30%  Similarity=0.379  Sum_probs=90.0

Q ss_pred             EEECcChHHHHHHHHHHHc-----CCcEEEEeeCCCC-CcccccCCCCCCCCccccccccceecCCccccccC-CCC---
Q 044575           16 CVIGAGPSGLVAARELRKE-----GHRVVVLEQNHDV-GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYT-DFP---   85 (454)
Q Consensus        16 vIIGaG~aGl~aA~~l~~~-----g~~v~vie~~~~~-GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---   85 (454)
                      +|||+|++|++++.+|.+.     ..+|+|||+++.- |+.|...           ..+....|++...|... +-|   
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~-----------~~~~~llN~~a~~~s~~~~~~~~~   69 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPD-----------QPPSHLLNTPADQMSLFPDDPGDD   69 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCC-----------CChHHhhcccccccccccccCCCC
Confidence            5999999999999999887     4699999996552 3456532           12344555555555442 211   


Q ss_pred             CC---CC------CCCCCCCCCCHHHHHHHHHHHHHHhC--CCc---cEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           86 FV---LK------KGRDVRRFPGHKELWLYLKDFCQRFG--LRE---MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        86 ~~---~~------~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~---~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      |.   ..      .......|+++..+-+||+++.+..-  +..   ....+.+|++|+..++          .|.|.+.
T Consensus        70 f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~----------~~~v~~~  139 (156)
T PF13454_consen   70 FVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDD----------GYRVVTA  139 (156)
T ss_pred             HHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCC----------cEEEEEC
Confidence            10   00      11245689999999999998887642  211   1234678899888754          6888887


Q ss_pred             ecCCCeEEEEEeCEEEEccCC
Q 044575          152 EKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~  172 (454)
                      ++.     .+.||+||+|||+
T Consensus       140 ~g~-----~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  140 DGQ-----SIRADAVVLATGH  155 (156)
T ss_pred             CCC-----EEEeCEEEECCCC
Confidence            775     7899999999995

>PRK06847 hypothetical protein; Provisional

Probab=99.28  E-value=1.7e-10  Score=113.83  Aligned_cols=149  Identities=23%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCCCCC---------CCcc-ccccccceecCCc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPNTDQ---------TEVH-SSVYASLRLTSPR   76 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~~~~---------~~~~-~~~~~~~~~~~~~   76 (454)
                      .+.+||+|||||++|+++|..|++.|++|+|+|+++.+..   .....+..-.         .... ...........+.
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD   81 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence            4457999999999999999999999999999999875321   1000000000         0000 0000000000000


Q ss_pred             cccccCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           77 EIMGYTDFPFVLKKGR--DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                      .. .+..++.+...+.  .......+.++.+++.+.+.+.++.  ++++++|++++..++          .+.|.+.++.
T Consensus        82 g~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~~~v~~~~g~  148 (375)
T PRK06847         82 GT-LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDDD----------GVTVTFSDGT  148 (375)
T ss_pred             CC-EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcCC----------EEEEEEcCCC
Confidence            00 0001111000000  1112356788899999988888876  899999999986543          6777776654


Q ss_pred             CCeEEEEEeCEEEEccCCCCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p  176 (454)
                           ++.+|.||+|+|.++..
T Consensus       149 -----~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        149 -----TGRYDLVVGADGLYSKV  165 (375)
T ss_pred             -----EEEcCEEEECcCCCcch
Confidence                 68999999999965543

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.26  E-value=4.1e-11  Score=110.59  Aligned_cols=148  Identities=26%  Similarity=0.305  Sum_probs=87.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceec-CCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLT-SPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   89 (454)
                      .+||+||||||+|++||..|++.|.+|+|+||+..+|| .|....          .+...... ....++..-+.++...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~----------~~~~~~~~~~~~~~l~~~gi~~~~~   90 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGM----------LFSKIVVEKPAHEILDEFGIRYEDE   90 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCc----------ceecccccchHHHHHHHCCCCeeec
Confidence            58999999999999999999999999999999998864 453211          11111000 0011111122333220


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                      .  .........++.+.+.+.+.+.++.  +.+++.|.++...++...+.+-.. .|......+......++.++.||.|
T Consensus        91 ~--~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~-~~~~v~~~g~~~d~~~i~Ak~VVdA  165 (254)
T TIGR00292        91 G--DGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVI-NWSAIELAGLHVDPLTQRSRVVVDA  165 (254)
T ss_pred             c--CceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEe-CCccccccCCCCCCEEEEcCEEEEe
Confidence            0  1011234568888888888888877  889999999887554200000000 1111111111112357899999999


Q ss_pred             cCCCC
Q 044575          170 TGHYS  174 (454)
Q Consensus       170 tG~~~  174 (454)
                      ||+.+
T Consensus       166 TG~~a  170 (254)
T TIGR00292       166 TGHDA  170 (254)
T ss_pred             ecCCc
Confidence            99643

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.25  E-value=1.1e-10  Score=105.85  Aligned_cols=258  Identities=18%  Similarity=0.200  Sum_probs=139.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ++++|+|||||.+|+++|..+.++ +. +|.|+|..++                  +.|....+-+-.+++.+..-.-+ 
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~------------------HyYQPgfTLvGgGl~~l~~srr~-   98 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED------------------HYYQPGFTLVGGGLKSLDSSRRK-   98 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh------------------cccCcceEEeccchhhhhhccCc-
Confidence            568999999999999999998776 44 8999998764                  34544444444444433221100 


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                          -....|...   .++++.+++|+-.                           +-+|.+++++     ++.|||+||
T Consensus        99 ----~a~liP~~a---~wi~ekv~~f~P~---------------------------~N~v~t~gg~-----eIsYdylvi  139 (446)
T KOG3851|consen   99 ----QASLIPKGA---TWIKEKVKEFNPD---------------------------KNTVVTRGGE-----EISYDYLVI  139 (446)
T ss_pred             ----ccccccCCc---HHHHHHHHhcCCC---------------------------cCeEEccCCc-----EEeeeeEee
Confidence                011112111   2334444444322                           4456677666     899999999


Q ss_pred             ccCCCCCCCCCCCCCcCC-ccce---eEEeec-----CCCCCC---------CCCCeEEEEcCCCCHHHHHHHHhh-hcC
Q 044575          169 ATGHYSYPRLPSIKGMDK-WKRK---QMHSHI-----YRVPEP---------FRNEVVVVVGNSLSGQDISMELVE-VAK  229 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~-~~~~---~~~~~~-----~~~~~~---------~~~k~vvVVG~G~sg~e~A~~l~~-~~~  229 (454)
                      |+|.  .-+.-.|+|+.+ +..+   ...|-.     |.....         |++-.|=.-|+-.-.+-++..+-+ .|.
T Consensus       140 A~Gi--ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gv  217 (446)
T KOG3851|consen  140 AMGI--QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGV  217 (446)
T ss_pred             eeec--eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCc
Confidence            9994  444444556433 1111   011110     111111         233334444665556666665444 343


Q ss_pred             --eEEEecccCCc--------CccchhhhccC-CCeEEcCceeEEecCC-cEEEeC----CC--EEeeceEEEccCccc-
Q 044575          230 --EVHLSAKSLNI--------SEGLSKVISKH-NNLHLHPQIDCLREDG-RVTFVD----GC--WVTADTILYCTGYSY-  290 (454)
Q Consensus       230 --~V~l~~r~~~~--------~~~~~~~l~~~-~~i~~~~~v~~v~~~~-~v~~~d----G~--~i~~D~vI~atG~~~-  290 (454)
                        ++.++......        ...+.+.+++. ..+..+..+.++..++ ..+|++    |.  +++++++-...-..+ 
T Consensus       218 Rd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p  297 (446)
T KOG3851|consen  218 RDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP  297 (446)
T ss_pred             cccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh
Confidence              35555443322        22233333322 2444445555554333 333432    54  466888877666553 


Q ss_pred             ----CCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccch
Q 044575          291 ----SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF  336 (454)
Q Consensus       291 ----~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~  336 (454)
                          +.++.+..|++.||.....        ....||+|.||||.+.++.
T Consensus       298 e~l~~s~~adktGfvdVD~~TlQ--------s~kypNVFgiGDc~n~Pns  339 (446)
T KOG3851|consen  298 EVLANSDLADKTGFVDVDQSTLQ--------SKKYPNVFGIGDCMNLPNS  339 (446)
T ss_pred             hhhhcCcccCcccceecChhhhc--------cccCCCceeeccccCCCch
Confidence                3455667788888864331        1346999999999987654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.22  E-value=1.1e-10  Score=108.07  Aligned_cols=142  Identities=27%  Similarity=0.225  Sum_probs=85.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc-cccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ-WLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+||||||||++||.+|++.|++|+|+|++..+||. |......+.......         ....+.--+.++....
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~---------~~~~l~~~gv~~~~~~   95 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEE---------ADEILDEFGIRYKEVE   95 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHH---------HHHHHHHCCCCceeec
Confidence            589999999999999999999999999999999988764 321100000000000         0000111122222100


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe------ecCCCeEEEEEeC
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK------EKKADKVVEEVFD  164 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~d  164 (454)
                        .......+.++...|.+.+.+.++.  ++++++|.++...+++.        -+-+.+.      .+......++.++
T Consensus        96 --~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~--------V~Gvv~~~~~v~~~g~~~~~~~i~Ak  163 (257)
T PRK04176         96 --DGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPR--------VAGVVINWTPVEMAGLHVDPLTIEAK  163 (257)
T ss_pred             --CcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCc--------EEEEEEccccccccCCCCCcEEEEcC
Confidence              1111235577888888888888887  88999999987654310        1222221      1111123478999


Q ss_pred             EEEEccCCCC
Q 044575          165 AVVVATGHYS  174 (454)
Q Consensus       165 ~vViAtG~~~  174 (454)
                      +||+|||+++
T Consensus       164 ~VI~ATG~~a  173 (257)
T PRK04176        164 AVVDATGHDA  173 (257)
T ss_pred             EEEEEeCCCc
Confidence            9999999754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.19  E-value=1.5e-10  Score=110.09  Aligned_cols=140  Identities=24%  Similarity=0.237  Sum_probs=85.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Ccccc------ccccceecCCccccccCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EVHSS------VYASLRLTSPREIMGYTDF   84 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~   84 (454)
                      +||+|||||++|+++|..|++.|.+|+|||+.+..+..+......+..  .+...      .........+..-.  ...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~   78 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDS--VEI   78 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcE--EEe
Confidence            589999999999999999999999999999998765433211111100  00000      00000000000000  001


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575           85 PFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD  164 (454)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d  164 (454)
                      +.+.    ......++.++.+.+.+.+.+.++.  ++++++|+++...++          .+.+.+..+    ..++++|
T Consensus        79 ~~~~----~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~~----------~~~~~~~~~----~~~~~a~  138 (295)
T TIGR02032        79 PIET----ELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHDD----------RVVVIVRGG----EGTVTAK  138 (295)
T ss_pred             ccCC----CcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeCC----------EEEEEEcCc----cEEEEeC
Confidence            1110    1122356788889999999888877  889999999877643          444544322    2268999


Q ss_pred             EEEEccCCCC
Q 044575          165 AVVVATGHYS  174 (454)
Q Consensus       165 ~vViAtG~~~  174 (454)
                      +||+|+|.++
T Consensus       139 ~vv~a~G~~s  148 (295)
T TIGR02032       139 IVIGADGSRS  148 (295)
T ss_pred             EEEECCCcch
Confidence            9999999644

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.17  E-value=5.3e-10  Score=111.94  Aligned_cols=143  Identities=19%  Similarity=0.263  Sum_probs=82.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCC------cccccc----
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSP------REIMGY----   81 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----   81 (454)
                      .+||+||||||||++||..|++.|++|+|+||.+.+|......+......+ ...++.+....|      ...+.+    
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~-e~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL-EHIIPGFADSAPVERLITHEKLAFMTEK   83 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH-HHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence            589999999999999999999999999999998876532111100000000 000000000000      000000    


Q ss_pred             --CCCCCCCC--CCCCCCCC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           82 --TDFPFVLK--KGRDVRRF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        82 --~~~~~~~~--~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                        ..+.+...  .......| ..+.++.++|.+.+++.++.  +..+++|+++...++          .+.+...++.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~g----------~v~~v~~~g~--  149 (428)
T PRK10157         84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRDG----------KVVGVEADGD--  149 (428)
T ss_pred             CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeCC----------EEEEEEcCCc--
Confidence              00011100  00011122 45778888999999888887  888999999876532          3333333332  


Q ss_pred             eEEEEEeCEEEEccCC
Q 044575          157 KVVEEVFDAVVVATGH  172 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~  172 (454)
                         ++.+|.||+|+|.
T Consensus       150 ---~i~A~~VI~A~G~  162 (428)
T PRK10157        150 ---VIEAKTVILADGV  162 (428)
T ss_pred             ---EEECCEEEEEeCC
Confidence               6899999999994

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.16  E-value=5e-10  Score=110.94  Aligned_cols=144  Identities=20%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-CC---CCcccccC---C-CCCCCCccccccccceecCCccccccCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-HD---VGGQWLYD---P-NTDQTEVHSSVYASLRLTSPREIMGYTDF   84 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-~~---~GG~w~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (454)
                      +||+||||||||+++|+.|++.|++|+|+|+. +.   .||.....   . ..+.... ...+.......|.........
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLI-DRRVTQMRMISPSRVPIKVTI   79 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHH-hhhcceeEEEcCCCceeeecc
Confidence            58999999999999999999999999999997 22   12211100   0 0000000 011111222222110000011


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec---CCCeEEEE
Q 044575           85 PFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK---KADKVVEE  161 (454)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~  161 (454)
                      +...    .......+..+.++|.+.+.+.++.  +. .++|+++...++          .+.|++.++   .+++..++
T Consensus        80 ~~~~----~~~~~~~r~~fd~~L~~~a~~~G~~--v~-~~~v~~v~~~~~----------~~~v~~~~~~~~~~~~~~~i  142 (388)
T TIGR02023        80 PSED----GYVGMVRREVFDSYLRERAQKAGAE--LI-HGLFLKLERDRD----------GVTLTYRTPKKGAGGEKGSV  142 (388)
T ss_pred             CCCC----CceEeeeHHHHHHHHHHHHHhCCCE--EE-eeEEEEEEEcCC----------eEEEEEEeccccCCCcceEE
Confidence            1000    1111267888999999999888876  54 446888876543          677777642   11223478


Q ss_pred             EeCEEEEccCCCC
Q 044575          162 VFDAVVVATGHYS  174 (454)
Q Consensus       162 ~~d~vViAtG~~~  174 (454)
                      ++|.||.|+|.++
T Consensus       143 ~a~~VI~AdG~~S  155 (388)
T TIGR02023       143 EADVVIGADGANS  155 (388)
T ss_pred             EeCEEEECCCCCc
Confidence            9999999999655

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.14  E-value=5.2e-10  Score=110.97  Aligned_cols=136  Identities=19%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc--ccCCCCCCCCccccccccceecCCcccc--ccCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW--LYDPNTDQTEVHSSVYASLRLTSPREIM--GYTDFPFVLK   89 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   89 (454)
                      ||+|||||+||+++|..|++.|++|+|+|+++.+|+.+  .........    ........+.-....  .+.+.+... 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-   75 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSD----LGLADCVEHVWPDVYEYRFPKQPRKL-   75 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhh----hchhhHHhhcCCCceEEecCCcchhc-
Confidence            79999999999999999999999999999998887642  221110000    000000000000000  001110000 


Q ss_pred             CCCCCC-CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           90 KGRDVR-RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        90 ~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                         ..+ ....+..+.+++.+.+.+.++.  + +.++|..+...+..         .|.|++.++.     ++++|.||.
T Consensus        76 ---~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~---------~~~v~~~~g~-----~~~a~~VI~  135 (388)
T TIGR01790        76 ---GTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVA---------LSTVYCAGGQ-----RIQARLVID  135 (388)
T ss_pred             ---CCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCc---------eeEEEeCCCC-----EEEeCEEEE
Confidence               111 1156788889998888877764  4 46688888765333         6888876654     789999999


Q ss_pred             ccCCCC
Q 044575          169 ATGHYS  174 (454)
Q Consensus       169 AtG~~~  174 (454)
                      |+|..+
T Consensus       136 A~G~~s  141 (388)
T TIGR01790       136 ARGFGP  141 (388)
T ss_pred             CCCCch
Confidence            999544

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.13  E-value=3.7e-10  Score=112.03  Aligned_cols=143  Identities=21%  Similarity=0.220  Sum_probs=87.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccccc----ceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS----LRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   87 (454)
                      .+||+||||||||.+||+.|++.|++|+|+|+.+.+|..-..........+. .....    +........+.+..-...
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~-~l~~~~~~~i~~~v~~~~~~~~~~~~~   81 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALE-ELIPDFDEEIERKVTGARIYFPGEKVA   81 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHH-HhCCCcchhhheeeeeeEEEecCCceE
Confidence            4899999999999999999999999999999999887643221111000000 00000    001111111111100000


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           88 LKKGRDVRRF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        88 ~~~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                      ... .....| ..+..+.++|...+++.+..  +..+++|..+...++          ...+.+..++    .++.+++|
T Consensus        82 ~~~-~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~~----------~~~~~~~~~~----~e~~a~~v  144 (396)
T COG0644          82 IEV-PVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIREDD----------GVVVGVRAGD----DEVRAKVV  144 (396)
T ss_pred             Eec-CCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeCC----------cEEEEEEcCC----EEEEcCEE
Confidence            000 001122 35678888999999999988  999999999988765          3444444332    47899999


Q ss_pred             EEccCC
Q 044575          167 VVATGH  172 (454)
Q Consensus       167 ViAtG~  172 (454)
                      |.|+|.
T Consensus       145 I~AdG~  150 (396)
T COG0644         145 IDADGV  150 (396)
T ss_pred             EECCCc
Confidence            999994

>PRK06834 hypothetical protein; Provisional

Probab=99.12  E-value=7.7e-10  Score=112.39  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=84.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC----CccccccccceecC--------Ccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT----EVHSSVYASLRLTS--------PREIM   79 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~   79 (454)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.....-.........    +-....++.+....        .....
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL   82 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence            4799999999999999999999999999999986421000000000000    00000111111000        00001


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                      .+.+++...    ..........+.+.|.+.+++.++.  ++++++|++++..++          .+.+++.++.     
T Consensus        83 ~~~~~~~~~----~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~~----------~v~v~~~~g~-----  141 (488)
T PRK06834         83 DISDFPTRH----NYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDDT----------GVDVELSDGR-----  141 (488)
T ss_pred             ccccCCCCC----CccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCC----------eEEEEECCCC-----
Confidence            111111000    1112235567888888888888876  999999999987643          5667665432     


Q ss_pred             EEEeCEEEEccCCCC
Q 044575          160 EEVFDAVVVATGHYS  174 (454)
Q Consensus       160 ~~~~d~vViAtG~~~  174 (454)
                      ++++|+||.|.|.+|
T Consensus       142 ~i~a~~vVgADG~~S  156 (488)
T PRK06834        142 TLRAQYLVGCDGGRS  156 (488)
T ss_pred             EEEeCEEEEecCCCC
Confidence            789999999999554

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.10  E-value=5.8e-10  Score=96.41  Aligned_cols=144  Identities=25%  Similarity=0.308  Sum_probs=85.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceecCCcc-ccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLTSPRE-IMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   89 (454)
                      ..||+|+|||||||+||++|++.|++|+|||++..+|| .|.--          -+++.+..+.|.. ...--+.++.. 
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG----------mlf~~iVv~~~a~~iL~e~gI~ye~-   98 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG----------MLFNKIVVREEADEILDEFGIRYEE-   98 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc----------cccceeeecchHHHHHHHhCCccee-
Confidence            46999999999999999999999999999999999876 46422          2233333322221 11111222221 


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           90 KGRDVRRF--PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        90 ~~~~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                         ....|  ....++..-+..-+-..+.+  |...+.|.+|-..++. .+.+--- .|+.....+-.-....+++++||
T Consensus        99 ---~e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~-rVaGvVv-NWt~V~~~~lhvDPl~i~a~~Vv  171 (262)
T COG1635          99 ---EEDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDP-RVAGVVV-NWTPVQMAGLHVDPLTIRAKAVV  171 (262)
T ss_pred             ---cCCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCC-ceEEEEE-ecchhhhcccccCcceeeEEEEE
Confidence               11111  23345555555555555655  7888889888766552 1111111 45544433221223478999999


Q ss_pred             EccCCC
Q 044575          168 VATGHY  173 (454)
Q Consensus       168 iAtG~~  173 (454)
                      -||||-
T Consensus       172 DaTGHd  177 (262)
T COG1635         172 DATGHD  177 (262)
T ss_pred             eCCCCc
Confidence            999974

>TIGR00275 flavoprotein, HI0933 family

Probab=99.10  E-value=5.8e-10  Score=110.58  Aligned_cols=141  Identities=28%  Similarity=0.433  Sum_probs=87.2

Q ss_pred             EEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc---c----cc--------ccceecCCccccc
Q 044575           16 CVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS---S----VY--------ASLRLTSPREIMG   80 (454)
Q Consensus        16 vIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~---~----~~--------~~~~~~~~~~~~~   80 (454)
                      +|||||+||++||..|++.|.+|+|+|+++.+|+.+...+.........   .    .|        ..+....+...+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            6999999999999999999999999999999887654433211110000   0    00        0000000111111


Q ss_pred             c-C--CCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           81 Y-T--DFPFVLKKGRDVRRFP---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        81 ~-~--~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                      + .  +.++...  .....||   ...++.+.+.+.+++.++.  ++++++|.++...+.          .|.|++. +.
T Consensus        81 ~~~~~Gv~~~~~--~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~~----------~~~v~~~-~~  145 (400)
T TIGR00275        81 FFESLGLELKVE--EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDDN----------GFGVETS-GG  145 (400)
T ss_pred             HHHHcCCeeEEe--cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCC----------eEEEEEC-Cc
Confidence            0 0  1111110  0112232   3578888999999888887  899999999976432          6777663 22


Q ss_pred             CCeEEEEEeCEEEEccCCCCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p  176 (454)
                           ++.+|+||+|||.++.|
T Consensus       146 -----~i~ad~VIlAtG~~s~p  162 (400)
T TIGR00275       146 -----EYEADKVILATGGLSYP  162 (400)
T ss_pred             -----EEEcCEEEECCCCcccC
Confidence                 67899999999976654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.09  E-value=1.8e-09  Score=111.52  Aligned_cols=153  Identities=23%  Similarity=0.216  Sum_probs=88.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc---ccCCCC---------CCCCcc-ccccccceecCCc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW---LYDPNT---------DQTEVH-SSVYASLRLTSPR   76 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w---~~~~~~---------~~~~~~-~~~~~~~~~~~~~   76 (454)
                      ...+||+||||||+|+++|..|++.|++|+|||+.+.+....   ...+..         ...... .............
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   87 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK   87 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence            456899999999999999999999999999999987653221   111000         000000 0000011110000


Q ss_pred             --cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           77 --EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                        ....+.. +.....+........+.++.++|.+.+.++ ++.  ++++++|++++..++          .++|++.+.
T Consensus        88 g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~~----------~v~v~~~~~  154 (538)
T PRK06183         88 GRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDDD----------GVTVTLTDA  154 (538)
T ss_pred             CCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcCC----------eEEEEEEcC
Confidence              1111110 000000001112235567778888877765 666  999999999987654          667777642


Q ss_pred             CCCeEEEEEeCEEEEccCCCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      + ++..++++|+||.|.|.+|.-
T Consensus       155 ~-G~~~~i~ad~vVgADG~~S~v  176 (538)
T PRK06183        155 D-GQRETVRARYVVGCDGANSFV  176 (538)
T ss_pred             C-CCEEEEEEEEEEecCCCchhH
Confidence            2 334578999999999965543

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.09  E-value=8.2e-10  Score=109.55  Aligned_cols=148  Identities=19%  Similarity=0.154  Sum_probs=82.7

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc--ccccCCCC-------C--CCCc-cccccccceecCCcc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG--QWLYDPNT-------D--QTEV-HSSVYASLRLTSPRE   77 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG--~w~~~~~~-------~--~~~~-~~~~~~~~~~~~~~~   77 (454)
                      ++.+||+|||||++|+++|..|++.|++|+|||+.+..+.  .+...+..       .  .... ....+..+....+..
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g   84 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG   84 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence            3457999999999999999999999999999999865421  11110000       0  0000 000011111100000


Q ss_pred             -cccc--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           78 -IMGY--TDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        78 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                       ....  ..+..............++..+.+.+.+.+.+++..  .+++++|++++..++          .|+|++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~----------~~~v~~~~g~  152 (388)
T PRK07494         85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRED----------EVTVTLADGT  152 (388)
T ss_pred             CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcCC----------eEEEEECCCC
Confidence             0000  000000000000111245667777777777766433  477999999976543          6788776543


Q ss_pred             CCeEEEEEeCEEEEccCCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~  174 (454)
                           ++++|.||.|+|.++
T Consensus       153 -----~~~a~~vI~AdG~~S  167 (388)
T PRK07494        153 -----TLSARLVVGADGRNS  167 (388)
T ss_pred             -----EEEEeEEEEecCCCc
Confidence                 789999999999654

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.08  E-value=6.4e-10  Score=108.62  Aligned_cols=148  Identities=23%  Similarity=0.200  Sum_probs=85.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc----ccccCCCC------C--CCCcccc---ccccceecCC--
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG----QWLYDPNT------D--QTEVHSS---VYASLRLTSP--   75 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG----~w~~~~~~------~--~~~~~~~---~~~~~~~~~~--   75 (454)
                      +||+|||||++|+++|..|++.|++|+|||+++....    ........      .  .......   ..........  
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   81 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS   81 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence            6899999999999999999999999999999876421    10000000      0  0000000   0000000000  


Q ss_pred             ------ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575           76 ------REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK  149 (454)
Q Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~  149 (454)
                            .......++....  .........+.++.+.|.+.+++.++.  ++++++|.+++...+          ..++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~~----------~~~~~  147 (356)
T PF01494_consen   82 DSRIWVENPQIREDMEIDT--KGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDDD----------GVTVV  147 (356)
T ss_dssp             TSEEEEEEEEEEEECHSTS--GSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEETT----------EEEEE
T ss_pred             Cccceeeecccceeeeccc--cCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeeccccccccc----------ccccc
Confidence                  0000000000000  001112245678999999999988866  999999999887654          55666


Q ss_pred             EeecCCCeEEEEEeCEEEEccCCCC
Q 044575          150 SKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       150 ~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +.+..++...++++|.||.|.|.+|
T Consensus       148 ~~~~~~g~~~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  148 VRDGEDGEEETIEADLVVGADGAHS  172 (356)
T ss_dssp             EEETCTCEEEEEEESEEEE-SGTT-
T ss_pred             cccccCCceeEEEEeeeecccCccc
Confidence            6666556667899999999999655

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.07  E-value=1.6e-09  Score=106.53  Aligned_cols=149  Identities=21%  Similarity=0.310  Sum_probs=90.8

Q ss_pred             cEEEECcChHHHHHHHHH--HHcCCcEEEEeeCCCC--Cc--ccccCCCCCCC--CccccccccceecCCccccccCCCC
Q 044575           14 NVCVIGAGPSGLVAAREL--RKEGHRVVVLEQNHDV--GG--QWLYDPNTDQT--EVHSSVYASLRLTSPREIMGYTDFP   85 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l--~~~g~~v~vie~~~~~--GG--~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   85 (454)
                      ||+|||||+||+++|.+|  .+.|.+|+|||+++..  ..  +|.+.......  ..-...|.......+.......+++
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            799999999999999999  6679999999998776  22  34433221110  0111122222222221111111111


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           86 FVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                      +         .......+.+++.+.+...+ .  +.++++|.+|+..+.          .+.|++.++.     +++++.
T Consensus        81 Y---------~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~~----------~~~v~~~~g~-----~i~a~~  133 (374)
T PF05834_consen   81 Y---------CMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETGD----------GVLVVLADGR-----TIRARV  133 (374)
T ss_pred             e---------EEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecCc----------eEEEEECCCC-----EEEeeE
Confidence            1         12567888888888777333 2  688999999987754          5677777765     899999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCcccee
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQ  191 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~  191 (454)
                      ||-|+|.  .+......+...|.|..
T Consensus       134 VvDa~g~--~~~~~~~~~~Q~f~G~~  157 (374)
T PF05834_consen  134 VVDARGP--SSPKARPLGLQHFYGWE  157 (374)
T ss_pred             EEECCCc--ccccccccccceeEEEE
Confidence            9999994  32222223444444433

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08244 hypothetical protein; Provisional

Probab=99.06  E-value=2.5e-09  Score=109.45  Aligned_cols=144  Identities=20%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCCCCC---------CCcc-ccccccceecCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPNTDQ---------TEVH-SSVYASLRLTSPREIM   79 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~   79 (454)
                      +||+||||||+|+++|..|++.|++|+||||.+...-   .....+..-.         .... ................
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            7899999999999999999999999999999865310   0000000000         0000 0000000000000001


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                      .+...+..    .......++..+.+.|.+.+++.++.  ++++++|++++..++          ..++++.+.+ + ..
T Consensus        83 ~~~~~~~~----~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v~v~~~~~~-g-~~  144 (493)
T PRK08244         83 DFSALDTS----SNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDGD----------GVEVVVRGPD-G-LR  144 (493)
T ss_pred             CcccCCCC----CCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcCC----------eEEEEEEeCC-c-cE
Confidence            11110000    01112245677888888888887876  899999999976543          5566665422 2 24


Q ss_pred             EEEeCEEEEccCCCC
Q 044575          160 EEVFDAVVVATGHYS  174 (454)
Q Consensus       160 ~~~~d~vViAtG~~~  174 (454)
                      ++++|+||.|.|..|
T Consensus       145 ~i~a~~vVgADG~~S  159 (493)
T PRK08244        145 TLTSSYVVGADGAGS  159 (493)
T ss_pred             EEEeCEEEECCCCCh
Confidence            689999999999655

>PLN02463 lycopene beta cyclase

Probab=99.05  E-value=1.3e-09  Score=108.85  Aligned_cols=137  Identities=20%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC-----CcccccCCCCCCCCccccccccceecCCccccccCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-----GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~-----GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      .+||+||||||||+++|..|++.|++|+|+|+++..     .|.|...-  .    .....+.+....+.....+.+...
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l--~----~lgl~~~l~~~w~~~~v~~~~~~~  101 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEF--E----ALGLLDCLDTTWPGAVVYIDDGKK  101 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHH--H----HCCcHHHHHhhCCCcEEEEeCCCC
Confidence            589999999999999999999999999999996532     23332100  0    000000000011111110100000


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           87 VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                      .. .. ..-....+.++.+++.+.+...++.  + ..++|.+|+..++          .+.|++.++.     ++.+|.|
T Consensus       102 ~~-~~-~~y~~V~R~~L~~~Ll~~~~~~GV~--~-~~~~V~~I~~~~~----------~~~V~~~dG~-----~i~A~lV  161 (447)
T PLN02463        102 KD-LD-RPYGRVNRKKLKSKMLERCIANGVQ--F-HQAKVKKVVHEES----------KSLVVCDDGV-----KIQASLV  161 (447)
T ss_pred             cc-cc-CcceeEEHHHHHHHHHHHHhhcCCE--E-EeeEEEEEEEcCC----------eEEEEECCCC-----EEEcCEE
Confidence            00 00 0111246778888888888777765  4 3578999887543          6778877654     7899999


Q ss_pred             EEccCCCC
Q 044575          167 VVATGHYS  174 (454)
Q Consensus       167 ViAtG~~~  174 (454)
                      |.|+|..+
T Consensus       162 I~AdG~~s  169 (447)
T PLN02463        162 LDATGFSR  169 (447)
T ss_pred             EECcCCCc
Confidence            99999543

>PRK10015 oxidoreductase; Provisional

Probab=99.05  E-value=3.4e-09  Score=106.01  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=81.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccccc------ceecCCccccccC---
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS------LRLTSPREIMGYT---   82 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---   82 (454)
                      .+||+||||||||++||..|++.|++|+||||.+.+|..-...+......+. ...+.      +........+.+.   
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~   83 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLE-AIIPGFAASAPVERKVTREKISFLTEE   83 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHH-HHcccccccCCccccccceeEEEEeCC
Confidence            5899999999999999999999999999999988764321100000000000 00000      0000111111110   


Q ss_pred             ---CCCCCCCCC--CCCCCC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           83 ---DFPFVLKKG--RDVRRF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        83 ---~~~~~~~~~--~~~~~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                         ..++.....  .....| ..+..+.++|.+.+++.++.  +..+++|+.+...++          ++.....++   
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~~----------~v~~v~~~~---  148 (429)
T PRK10015         84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREGN----------KVTGVQAGD---  148 (429)
T ss_pred             CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCC----------EEEEEEeCC---
Confidence               001110000  001122 35677788888888888877  888999999876532          443222222   


Q ss_pred             eEEEEEeCEEEEccCCC
Q 044575          157 KVVEEVFDAVVVATGHY  173 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~  173 (454)
                        .++.+|.||+|+|..
T Consensus       149 --~~i~A~~VI~AdG~~  163 (429)
T PRK10015        149 --DILEANVVILADGVN  163 (429)
T ss_pred             --eEEECCEEEEccCcc
Confidence              268999999999943

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.05  E-value=7.8e-10  Score=110.75  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=82.7

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC-----cccccCCCCCCCCccccccccceec-CC--------
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG-----GQWLYDPNTDQTEVHSSVYASLRLT-SP--------   75 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G-----G~w~~~~~~~~~~~~~~~~~~~~~~-~~--------   75 (454)
                      ...+||+|||||++|+++|..|++.|++|+|||+.+...     ......+..-..+-.-.+++.+... .+        
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   95 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD   95 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence            446899999999999999999999999999999987642     1111111000000000000000000 00        


Q ss_pred             ---ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           76 ---REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                         .....+.......   ........+..+.+.|.+.+... ++.  ++++++|++++..++          .+.|++.
T Consensus        96 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~~----------~~~v~~~  160 (415)
T PRK07364         96 ADYPGVVKFQPTDLGT---EALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQD----------AATVTLE  160 (415)
T ss_pred             CCCCceeeeccccCCC---CccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCC----------eeEEEEc
Confidence               0001111000000   00011123456667776666554 455  788999999976543          5667765


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCCC
Q 044575          152 EKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      +++  ...++++|.||.|.|.+|.
T Consensus       161 ~~~--~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        161 IEG--KQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             cCC--cceEEeeeEEEEeCCCCch
Confidence            422  2236899999999996553

>PRK06184 hypothetical protein; Provisional

Probab=99.05  E-value=2.7e-09  Score=109.42  Aligned_cols=149  Identities=16%  Similarity=0.135  Sum_probs=83.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCC------------CCcc-ccccccceecCCcc-
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQ------------TEVH-SSVYASLRLTSPRE-   77 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~------------~~~~-~~~~~~~~~~~~~~-   77 (454)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.+.-.-.-....+.            .... ...+.......+.. 
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   82 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS   82 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence            479999999999999999999999999999998764211000000000            0000 00011111000000 


Q ss_pred             ccccCCCCCCCC-CCC--CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           78 IMGYTDFPFVLK-KGR--DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        78 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                      ............ ...  ......++..+.+.|.+.+.+.++.  ++++++|++++..++          .+++++....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~~----------~v~v~~~~~~  150 (502)
T PRK06184         83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDAD----------GVTARVAGPA  150 (502)
T ss_pred             EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcCC----------cEEEEEEeCC
Confidence            000000000000 000  0111234566777788888777776  999999999986643          5566654322


Q ss_pred             CCeEEEEEeCEEEEccCCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~  174 (454)
                        ...++++|+||.|+|.+|
T Consensus       151 --~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        151 --GEETVRARYLVGADGGRS  168 (502)
T ss_pred             --CeEEEEeCEEEECCCCch
Confidence              123789999999999655

>PRK07045 putative monooxygenase; Reviewed

Probab=99.04  E-value=2.7e-09  Score=105.84  Aligned_cols=148  Identities=20%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC---CcccccCCCCCCC---------Ccc--ccccccceecCCc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV---GGQWLYDPNTDQT---------EVH--SSVYASLRLTSPR   76 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~---GG~w~~~~~~~~~---------~~~--~~~~~~~~~~~~~   76 (454)
                      ..+||+||||||+|+++|..|++.|++|+|+|+.+.+   ++.-...++....         ...  ......+......
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   83 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK   83 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence            3479999999999999999999999999999998864   1211111110000         000  0001111110000


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           77 EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                      ....  .+++............++.++.+.+.+.+... ++.  ++++++|++++..+++.        .+.|+..++. 
T Consensus        84 ~~~~--~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~--------~~~v~~~~g~-  150 (388)
T PRK07045         84 ELIA--SLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGT--------VTSVTLSDGE-  150 (388)
T ss_pred             cEEE--EecCCccccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCc--------EEEEEeCCCC-
Confidence            0000  01111100001111245667777776665433 454  89999999998765431        3466665543 


Q ss_pred             CeEEEEEeCEEEEccCCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~  175 (454)
                          ++.+|.||.|.|.+|.
T Consensus       151 ----~~~~~~vIgADG~~S~  166 (388)
T PRK07045        151 ----RVAPTVLVGADGARSM  166 (388)
T ss_pred             ----EEECCEEEECCCCChH
Confidence                7899999999996653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.03  E-value=1.9e-09  Score=107.14  Aligned_cols=144  Identities=13%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC----cc-cccCCCCCCC---Cccccccccc-----------e
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG----GQ-WLYDPNTDQT---EVHSSVYASL-----------R   71 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G----G~-w~~~~~~~~~---~~~~~~~~~~-----------~   71 (454)
                      ..+||+||||||+|+++|..|+++|++|+|||+.+...    +. -......+..   +-.-.+++.+           .
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR   84 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence            45899999999999999999999999999999976432    10 0000000000   0000011111           0


Q ss_pred             ecCC--ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575           72 LTSP--REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK  149 (454)
Q Consensus        72 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~  149 (454)
                      ....  .....+.......   ........+..+.+.+.+.+++.++.  +.++++|++++..++          .++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~----------~v~v~  149 (392)
T PRK08773         85 VWDAGGGGELGFDADTLGR---EQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDAD----------RVRLR  149 (392)
T ss_pred             EEeCCCCceEEechhccCC---CcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecCC----------eEEEE
Confidence            0000  0001111000000   00111234567788888888877776  889999999986543          67777


Q ss_pred             EeecCCCeEEEEEeCEEEEccCCCC
Q 044575          150 SKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       150 ~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +.++.     ++.+|.||.|+|.++
T Consensus       150 ~~~g~-----~~~a~~vV~AdG~~S  169 (392)
T PRK08773        150 LDDGR-----RLEAALAIAADGAAS  169 (392)
T ss_pred             ECCCC-----EEEeCEEEEecCCCc
Confidence            66543     689999999999544

>PRK06126 hypothetical protein; Provisional

Probab=99.03  E-value=6.2e-09  Score=107.89  Aligned_cols=152  Identities=15%  Similarity=0.165  Sum_probs=85.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-cccccccce---------------e-
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLR---------------L-   72 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~---------------~-   72 (454)
                      .++|+||||||+|+++|..|++.|++|+|||+.+.+.-.-.-....+..  .+ ...+++.+.               . 
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            5799999999999999999999999999999986432100000000000  00 000000000               0 


Q ss_pred             cCCcccccc--CCC----CCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccC
Q 044575           73 TSPREIMGY--TDF----PFVLK-----KGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIG  140 (454)
Q Consensus        73 ~~~~~~~~~--~~~----~~~~~-----~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~  140 (454)
                      .....+..+  ...    ..+..     .........++..+.+.|.+.+.+. ++.  ++++++|++++..++      
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~------  158 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDAD------  158 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECCC------
Confidence            000000000  000    00000     0000112245566777888877765 566  999999999987643      


Q ss_pred             CcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          141 NDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                          ..++++.+..++...++.+|+||.|.|.+|.
T Consensus       159 ----~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        159 ----GVTATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             ----eEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence                5566665533344567899999999996553

>PRK06185 hypothetical protein; Provisional

Probab=99.02  E-value=3.2e-09  Score=106.01  Aligned_cols=147  Identities=18%  Similarity=0.230  Sum_probs=83.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC-----cccccCC-----CCC-CCCcc---ccccccceecCCc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG-----GQWLYDP-----NTD-QTEVH---SSVYASLRLTSPR   76 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G-----G~w~~~~-----~~~-~~~~~---~~~~~~~~~~~~~   76 (454)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+...     ..+....     ... ...+.   ......+......
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~   84 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG   84 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence            45899999999999999999999999999999976431     1110000     000 00000   0001111110011


Q ss_pred             c---ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575           77 E---IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE  152 (454)
Q Consensus        77 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~  152 (454)
                      .   ...+...+.+.    ....+.++.++.+.+.+.+.+. ++.  +.++++|+++...++.         ...|++..
T Consensus        85 ~~~~~~~~~~~~~~~----~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~---------v~~v~~~~  149 (407)
T PRK06185         85 RTVTLADFSRLPTPY----PYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGR---------VTGVRART  149 (407)
T ss_pred             eEEEecchhhcCCCC----CcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCE---------EEEEEEEc
Confidence            0   11111111110    1122356678888888877665 555  8889999999876432         22244433


Q ss_pred             cCCCeEEEEEeCEEEEccCCCC
Q 044575          153 KKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       153 ~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+ + ..++.+|.||.|+|.++
T Consensus       150 ~~-g-~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        150 PD-G-PGEIRADLVVGADGRHS  169 (407)
T ss_pred             CC-C-cEEEEeCEEEECCCCch
Confidence            21 1 23689999999999655

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.01  E-value=3.9e-09  Score=104.24  Aligned_cols=84  Identities=17%  Similarity=0.071  Sum_probs=59.0

Q ss_pred             EEEcCCCCHHHHH-HHHh----hhcCeEEEecccCCcCccc------hhhhc-cCCCeEEcCceeEEecC-CcE---EEe
Q 044575          209 VVVGNSLSGQDIS-MELV----EVAKEVHLSAKSLNISEGL------SKVIS-KHNNLHLHPQIDCLRED-GRV---TFV  272 (454)
Q Consensus       209 vVVG~G~sg~e~A-~~l~----~~~~~V~l~~r~~~~~~~~------~~~l~-~~~~i~~~~~v~~v~~~-~~v---~~~  272 (454)
                      +|++.+.+|+|.+ ..++    ++|.+|+++.+.++..+.+      .+.+. ..+++..+..|.+++.+ +.+   ...
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~  298 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR  298 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee
Confidence            7789999999999 5554    4699999998887764442      23332 23478888889888633 222   233


Q ss_pred             CCC--EEeeceEEEccCcccCC
Q 044575          273 DGC--WVTADTILYCTGYSYSF  292 (454)
Q Consensus       273 dG~--~i~~D~vI~atG~~~~~  292 (454)
                      +|+  .+++|.||+|||..++.
T Consensus       299 ~g~~~~i~AD~VVLAtGrf~s~  320 (422)
T PRK05329        299 NHGDIPLRARHFVLATGSFFSG  320 (422)
T ss_pred             CCceEEEECCEEEEeCCCcccC
Confidence            454  47799999999987553

>PRK07190 hypothetical protein; Provisional

Probab=99.01  E-value=3.6e-09  Score=107.41  Aligned_cols=146  Identities=18%  Similarity=0.125  Sum_probs=83.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-ccccccccee----------cCCccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLRL----------TSPREI   78 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~~----------~~~~~~   78 (454)
                      .+||+||||||+|+++|..|++.|.+|+|||+.+.....-.-....+..  .+ ....++.+..          ......
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~   84 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF   84 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence            4799999999999999999999999999999987643110000000000  00 0000000000          000000


Q ss_pred             cccCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           79 MGYTDFPFVLKKGRDV--RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        79 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                      ......-+....+...  ....+...+.+.|.+.+.+.++.  ++++++|++++..++          .+.+++.++.  
T Consensus        85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~~----------~v~v~~~~g~--  150 (487)
T PRK07190         85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQA----------GCLTTLSNGE--  150 (487)
T ss_pred             EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCC----------eeEEEECCCc--
Confidence            0000000000000001  11234567777888888888877  999999999987654          4556554432  


Q ss_pred             eEEEEEeCEEEEccCCCC
Q 044575          157 KVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~  174 (454)
                         ++++++||.|+|.+|
T Consensus       151 ---~v~a~~vVgADG~~S  165 (487)
T PRK07190        151 ---RIQSRYVIGADGSRS  165 (487)
T ss_pred             ---EEEeCEEEECCCCCH
Confidence               789999999999554

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.01  E-value=2.8e-09  Score=95.10  Aligned_cols=137  Identities=27%  Similarity=0.383  Sum_probs=80.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccc-----------------ccceecCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVY-----------------ASLRLTSP   75 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~-----------------~~~~~~~~   75 (454)
                      .+|+|||+|++|++||..|++.|.+|+||||...+||..-.........-+...|                 ..+..--.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~   81 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT   81 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence            4699999999999999999999999999999999998754332211100000000                 01111111


Q ss_pred             ccccccCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           76 REIMGYTDFPFVLKKGRDV--RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                      ..+..|.+-..+.. +.+.  ..-|.-..+.+|+..     ++.  +.++++|+.|.+.++          .|++.++++
T Consensus        82 ~~~~~~~~~~~~~~-~d~~pyvg~pgmsalak~LAt-----dL~--V~~~~rVt~v~~~~~----------~W~l~~~~g  143 (331)
T COG3380          82 PAVWTFTGDGSPPR-GDEDPYVGEPGMSALAKFLAT-----DLT--VVLETRVTEVARTDN----------DWTLHTDDG  143 (331)
T ss_pred             ccccccccCCCCCC-CCCCccccCcchHHHHHHHhc-----cch--hhhhhhhhhheecCC----------eeEEEecCC
Confidence            11122221111110 0011  111233334443322     444  789999999988743          899999765


Q ss_pred             CCCeEEEEEeCEEEEccC
Q 044575          154 KADKVVEEVFDAVVVATG  171 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG  171 (454)
                      ..    ...+|.||||.=
T Consensus       144 ~~----~~~~d~vvla~P  157 (331)
T COG3380         144 TR----HTQFDDVVLAIP  157 (331)
T ss_pred             Cc----ccccceEEEecC
Confidence            41    567999999986

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.00  E-value=5.9e-09  Score=103.44  Aligned_cols=147  Identities=21%  Similarity=0.218  Sum_probs=82.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc---------ccccccceecCCccccccCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH---------SSVYASLRLTSPREIMGYTD   83 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~   83 (454)
                      +||+||||||||++||..|++.|++|+|+|+....+..|.  .+.+...+.         ...........|.....  +
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg--~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~--~   76 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCG--GAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAV--D   76 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCcc--ccccHhhHhhccCchhHHHhhhceeEEecCCceEE--E
Confidence            4899999999999999999999999999999765443321  111111000         00011111111111000  0


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC----CCeEE
Q 044575           84 FPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK----ADKVV  159 (454)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~  159 (454)
                      +.... ..........+..+.++|.+.+.+.++.  +..+ ++.++......      .. .+.|++....    .++..
T Consensus        77 ~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~------~~-~~~v~~~~~~~~~~~g~~~  145 (398)
T TIGR02028        77 IGRTL-KEHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADA------DD-PYTLHYISSDSGGPSGTRC  145 (398)
T ss_pred             eccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCC------Cc-eEEEEEeeccccccCCCcc
Confidence            00000 0001111257788889999999988887  6555 46666532211      01 5667654221    12234


Q ss_pred             EEEeCEEEEccCCCC
Q 044575          160 EEVFDAVVVATGHYS  174 (454)
Q Consensus       160 ~~~~d~vViAtG~~~  174 (454)
                      ++++|.||.|+|..|
T Consensus       146 ~i~a~~VIgADG~~S  160 (398)
T TIGR02028       146 TLEVDAVIGADGANS  160 (398)
T ss_pred             EEEeCEEEECCCcch
Confidence            789999999999433

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.00  E-value=1.2e-09  Score=108.32  Aligned_cols=141  Identities=12%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc--------ccccCCCCCC---------CCc--cccccccceecC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG--------QWLYDPNTDQ---------TEV--HSSVYASLRLTS   74 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG--------~w~~~~~~~~---------~~~--~~~~~~~~~~~~   74 (454)
                      ||+|||||+||+++|..|++.|++|+|+|+.+.++-        .....+..-.         ...  ....+..+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            699999999999999999999999999999976421        1111100000         000  000011111111


Q ss_pred             Cc--cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           75 PR--EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      ..  ..+.+   +.............++.++.+.|.+.+.+.+ +.  ++++++|++++..++          .+.++..
T Consensus        81 ~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~~----------~~~v~~~  145 (385)
T TIGR01988        81 GGSFGALHF---DADEIGLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHSD----------HVELTLD  145 (385)
T ss_pred             CCCCceEEe---chhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecCC----------eeEEEEC
Confidence            10  00011   1000000001112456778888888777765 55  889999999986543          6777776


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCC
Q 044575          152 EKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ++.     ++.+|.||.|.|.++
T Consensus       146 ~g~-----~~~~~~vi~adG~~S  163 (385)
T TIGR01988       146 DGQ-----QLRARLLVGADGANS  163 (385)
T ss_pred             CCC-----EEEeeEEEEeCCCCC
Confidence            554     689999999999655

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02697 lycopene epsilon cyclase

Probab=98.99  E-value=3.4e-09  Score=107.61  Aligned_cols=135  Identities=19%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC---cccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG---GQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G---G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .+||+||||||||+++|..|++.|++|+|+|+...+.   |.|...-  ...    ...+.+....+.....+.+.....
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l--~~l----gl~~~i~~~w~~~~v~~~~~~~~~  181 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEF--KDL----GLEDCIEHVWRDTIVYLDDDKPIM  181 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHH--Hhc----CcHHHHHhhcCCcEEEecCCceee
Confidence            5899999999999999999999999999999864432   3443110  000    000000000000001011100000


Q ss_pred             CCCCCCCC--CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE-EEeecCCCeEEEEEeCE
Q 044575           89 KKGRDVRR--FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV-KSKEKKADKVVEEVFDA  165 (454)
Q Consensus        89 ~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~d~  165 (454)
                          ....  ...+..+.+.+.+.+.+.++.  + ++++|++|...++          .+.+ ...++.     ++.+|.
T Consensus       182 ----~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~~----------~~~vv~~~dG~-----~i~A~l  239 (529)
T PLN02697        182 ----IGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEASD----------GLRLVACEDGR-----VIPCRL  239 (529)
T ss_pred             ----ccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcCC----------cEEEEEEcCCc-----EEECCE
Confidence                0111  256778888888888777775  4 6789999876543          4443 333333     789999


Q ss_pred             EEEccCCCC
Q 044575          166 VVVATGHYS  174 (454)
Q Consensus       166 vViAtG~~~  174 (454)
                      ||+|+|..+
T Consensus       240 VI~AdG~~S  248 (529)
T PLN02697        240 ATVASGAAS  248 (529)
T ss_pred             EEECCCcCh
Confidence            999999755

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.99  E-value=3.3e-09  Score=105.74  Aligned_cols=140  Identities=19%  Similarity=0.226  Sum_probs=83.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCC----CC-----------CCcc--ccccccceec
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNT----DQ-----------TEVH--SSVYASLRLT   73 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~----~~-----------~~~~--~~~~~~~~~~   73 (454)
                      +||+||||||+|+++|..|++.|  ++|+|||+.+....  ...++.    +.           +.+.  ......+...
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~--~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   79 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW--SRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT   79 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC--CCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence            78999999999999999999985  99999999764210  000000    00           0000  0000000000


Q ss_pred             CCc-------cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcE
Q 044575           74 SPR-------EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKW  146 (454)
Q Consensus        74 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~  146 (454)
                      ...       ..+.+..   ....+........+.++.+.|.+.+.+.++.  ++++++|++++..++          .+
T Consensus        80 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v  144 (403)
T PRK07333         80 DSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRDE----------GV  144 (403)
T ss_pred             eCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCC----------EE
Confidence            000       0011100   0000001112356788889998888887877  889999999986543          67


Q ss_pred             EEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          147 VVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       147 ~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .|++.++.     ++.+|.||.|+|.++
T Consensus       145 ~v~~~~g~-----~~~ad~vI~AdG~~S  167 (403)
T PRK07333        145 TVTLSDGS-----VLEARLLVAADGARS  167 (403)
T ss_pred             EEEECCCC-----EEEeCEEEEcCCCCh
Confidence            77766543     689999999999544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.99  E-value=3.2e-10  Score=98.70  Aligned_cols=144  Identities=24%  Similarity=0.304  Sum_probs=74.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc-cccCCCCCCCCccccccccceecCCcc-ccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ-WLYDPNTDQTEVHSSVYASLRLTSPRE-IMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~-w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   88 (454)
                      ..+||+||||||+||+||+.|++.|++|++||++..+||. |.--          .++.....+.+.. +..--+.++..
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg----------~lf~~iVVq~~a~~iL~elgi~y~~   85 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG----------MLFNKIVVQEEADEILDELGIPYEE   85 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C----------TT---EEEETTTHHHHHHHT---EE
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc----------cccchhhhhhhHHHHHHhCCceeEE
Confidence            3589999999999999999999999999999999999864 5422          2333333332211 11111222221


Q ss_pred             CCCCCCC-CC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           89 KKGRDVR-RF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        89 ~~~~~~~-~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                          ... .| ....++...|-.-+-+-+..  |...+.|+++-..++. .+.+--- .|+.....+-.-....+++++|
T Consensus        86 ----~~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~-rV~GvVi-NWt~V~~~glHvDPl~i~ak~V  157 (230)
T PF01946_consen   86 ----YGDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDD-RVAGVVI-NWTPVEMAGLHVDPLTIRAKVV  157 (230)
T ss_dssp             -----SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSC-EEEEEEE-EEHHHHTT--T-B-EEEEESEE
T ss_pred             ----eCCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCC-eEEEEEE-EehHHhHhhcCCCcceEEEeEE
Confidence                111 11 24456666665555555665  7778889888766531 1110000 2221111111112358999999


Q ss_pred             EEccCC
Q 044575          167 VVATGH  172 (454)
Q Consensus       167 ViAtG~  172 (454)
                      |-||||
T Consensus       158 iDaTGH  163 (230)
T PF01946_consen  158 IDATGH  163 (230)
T ss_dssp             EE---S
T ss_pred             EeCCCC
Confidence            999997

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.99  E-value=3.1e-09  Score=105.76  Aligned_cols=148  Identities=20%  Similarity=0.134  Sum_probs=82.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCCCCCCCCccccccccceec-CCccccccC-----
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDPNTDQTEVHSSVYASLRLT-SPREIMGYT-----   82 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----   82 (454)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+.++-.   ....+..-..+-.-..++.+... .+...+.+.     
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            478999999999999999999999999999998765421   00000000000000000000000 000000000     


Q ss_pred             ----CCCCCCCC--CCCCC-CCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           83 ----DFPFVLKK--GRDVR-RFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        83 ----~~~~~~~~--~~~~~-~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                          ..+.....  ....+ ....+.++.+.|.+.+.+.+ +.  ++++++|++++..++          .++++..++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~----------~v~v~~~~g~  151 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDGD----------GVTVFDQQGN  151 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCCC----------ceEEEEcCCC
Confidence                00100000  00001 12456777777777776554 54  788999999986432          5667766543


Q ss_pred             CCeEEEEEeCEEEEccCCCCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p  176 (454)
                           ++.+|.||.|.|.++..
T Consensus       152 -----~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        152 -----RWTGDALIGCDGVKSVV  168 (396)
T ss_pred             -----EEecCEEEECCCcChHH
Confidence                 68999999999965544

>PRK07538 hypothetical protein; Provisional

Probab=98.98  E-value=1.9e-08  Score=100.67  Aligned_cols=152  Identities=22%  Similarity=0.164  Sum_probs=83.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC---cccccCCCCCCCCccccccccc----------eecCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG---GQWLYDPNTDQTEVHSSVYASL----------RLTSPREIM   79 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G---G~w~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   79 (454)
                      +||+|||||++|+++|..|++.|++|+|||+.+.+.   ......+..-..+-.-.+++.+          ....+....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~   80 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR   80 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence            379999999999999999999999999999987542   1111111000000000001110          000000000


Q ss_pred             ccCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           80 GYTDFPFVLKKGRDVRR-FPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                      -+. .+.....+...+. ..++.++.+.|.+.+.+ .+. ..++++++|++++..++          ...+.+.++..+.
T Consensus        81 ~~~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~~----------~~~~~~~~~~~g~  148 (413)
T PRK07538         81 IWS-EPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDAD----------VTVVFLGDRAGGD  148 (413)
T ss_pred             Eee-ccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecCC----------ceEEEEeccCCCc
Confidence            000 0000000001111 24677777777766543 342 23899999999986543          3445555443334


Q ss_pred             EEEEEeCEEEEccCCCCCC
Q 044575          158 VVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p  176 (454)
                      ..++++|.||-|.|.+|.-
T Consensus       149 ~~~~~adlvIgADG~~S~v  167 (413)
T PRK07538        149 LVSVRGDVLIGADGIHSAV  167 (413)
T ss_pred             cceEEeeEEEECCCCCHHH
Confidence            4578999999999976643

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.97  E-value=4e-09  Score=104.71  Aligned_cols=144  Identities=19%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccC-CCCCC-------------CCcc--ccccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYD-PNTDQ-------------TEVH--SSVYASL   70 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~-~~~~~-------------~~~~--~~~~~~~   70 (454)
                      +.+||+|||||++|+++|..|++.|++|+|||+.+..    ++.+... .....             ....  ...+..+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL   83 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence            4589999999999999999999999999999997531    1100000 00000             0000  0000010


Q ss_pred             eec-CCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575           71 RLT-SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV  148 (454)
Q Consensus        71 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v  148 (454)
                      ... .......+.......   ........+..+.+.|.+.++.. ++.  +.++++|+++...++          .|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~---~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~----------~~~v  148 (391)
T PRK08020         84 ETWEWETAHVVFDAAELKL---PELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDDD----------GWEL  148 (391)
T ss_pred             EEEeCCCCeEEecccccCC---CccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcCC----------eEEE
Confidence            000 000001111000000   00001134567777777766655 655  778999999876543          6778


Q ss_pred             EEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          149 KSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       149 ~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ++.++.     ++++|.||.|.|.+|
T Consensus       149 ~~~~g~-----~~~a~~vI~AdG~~S  169 (391)
T PRK08020        149 TLADGE-----EIQAKLVIGADGANS  169 (391)
T ss_pred             EECCCC-----EEEeCEEEEeCCCCc
Confidence            776553     789999999999655

>PRK08013 oxidoreductase; Provisional

Probab=98.96  E-value=7.5e-09  Score=103.03  Aligned_cols=147  Identities=20%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---c-cccC--CCCCCC---Cccccccccceec--CCccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---Q-WLYD--PNTDQT---EVHSSVYASLRLT--SPREIMG   80 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~-w~~~--~~~~~~---~~~~~~~~~~~~~--~~~~~~~   80 (454)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.+.-   . ....  ...+..   +-.-.+++.+...  .+...+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            47999999999999999999999999999999875321   0 0000  000000   0000011111000  0000000


Q ss_pred             c------CCCCCCCC-CCCCC-CCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           81 Y------TDFPFVLK-KGRDV-RRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        81 ~------~~~~~~~~-~~~~~-~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      +      ....+... .+... .....+..+.+.|.+.+... ++.  ++++++|++++..++          ..+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~----------~v~v~~~  150 (400)
T PRK08013         83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGEN----------EAFLTLK  150 (400)
T ss_pred             EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCC----------eEEEEEc
Confidence            0      00001100 00000 11245677778887777665 455  889999999976543          5667766


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCCC
Q 044575          152 EKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ++.     ++++|.||-|.|.+|.
T Consensus       151 ~g~-----~i~a~lvVgADG~~S~  169 (400)
T PRK08013        151 DGS-----MLTARLVVGADGANSW  169 (400)
T ss_pred             CCC-----EEEeeEEEEeCCCCcH
Confidence            554     7899999999996553

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.95  E-value=8e-09  Score=103.07  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=81.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc----ccCCC----CCCC---Ccccccccccee--cCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW----LYDPN----TDQT---EVHSSVYASLRL--TSPREIM   79 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w----~~~~~----~~~~---~~~~~~~~~~~~--~~~~~~~   79 (454)
                      +||+|||||++|+++|..|++.|++|+|||+.+...+..    ...+.    .+..   +-.-.+++.+..  ..+...+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            699999999999999999999999999999976211100    00000    0000   000001111110  0010000


Q ss_pred             ccC------CCCCCCCC-CC-CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           80 GYT------DFPFVLKK-GR-DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        80 ~~~------~~~~~~~~-~~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      .+.      ...+.... .. .......+..+.+.+.+.+.+.++.  ++++++|++++..++          .|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v~v~~~  150 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSGD----------DWLLTLA  150 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcCC----------eEEEEEC
Confidence            000      00011000 00 0011234556666666666666665  888999999986543          6778776


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCCC
Q 044575          152 EKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ++.     ++.+|.||.|.|.+|.
T Consensus       151 ~g~-----~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        151 DGR-----QLRAPLVVAADGANSA  169 (405)
T ss_pred             CCC-----EEEeCEEEEecCCCch
Confidence            654     7899999999996654

>PRK11445 putative oxidoreductase; Provisional

Probab=98.95  E-value=2.2e-08  Score=97.86  Aligned_cols=146  Identities=18%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCC---C---Ccc-cccc-ccceecCCccccccCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQ---T---EVH-SSVY-ASLRLTSPREIMGYTDF   84 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~---~---~~~-~~~~-~~~~~~~~~~~~~~~~~   84 (454)
                      +||+||||||||+++|..|++. ++|+|+|+.+..+-.-...+|...   .   .+. -... .......+. .+.....
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~~   79 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKTI   79 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeEe
Confidence            6999999999999999999999 999999998753200000011100   0   000 0000 000000000 0000000


Q ss_pred             CCCCC-CCCCCCC--CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE
Q 044575           85 PFVLK-KGRDVRR--FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE  161 (454)
Q Consensus        85 ~~~~~-~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (454)
                      .+... .......  -..+.++.+.+.+.. ..++.  +++++.|.+++..++          .|.|+....  +...++
T Consensus        80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~~----------~~~v~~~~~--g~~~~i  144 (351)
T PRK11445         80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWREDD----------GYHVIFRAD--GWEQHI  144 (351)
T ss_pred             cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcCC----------EEEEEEecC--CcEEEE
Confidence            00000 0000111  256677777777643 44555  888999999986543          677776432  223368


Q ss_pred             EeCEEEEccCCCCC
Q 044575          162 VFDAVVVATGHYSY  175 (454)
Q Consensus       162 ~~d~vViAtG~~~~  175 (454)
                      ++|+||.|+|..|.
T Consensus       145 ~a~~vV~AdG~~S~  158 (351)
T PRK11445        145 TARYLVGADGANSM  158 (351)
T ss_pred             EeCEEEECCCCCcH
Confidence            99999999996553

>PRK09126 hypothetical protein; Provisional

Probab=98.95  E-value=2.8e-09  Score=105.88  Aligned_cols=34  Identities=38%  Similarity=0.681  Sum_probs=32.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            7899999999999999999999999999999875

>PRK07588 hypothetical protein; Provisional

Probab=98.95  E-value=4.8e-09  Score=104.18  Aligned_cols=145  Identities=18%  Similarity=0.098  Sum_probs=81.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC---CcccccCCCCCC---------CCc-cccccccceecCCc--c
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV---GGQWLYDPNTDQ---------TEV-HSSVYASLRLTSPR--E   77 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~---GG~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~--~   77 (454)
                      .||+|||||++|+++|..|++.|++|+|+|+.+..   |..|...+..-.         ... .......+......  .
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~   80 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR   80 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence            37999999999999999999999999999998754   222222111000         000 00001111110000  0


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           78 IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                      ...+....+....+ ......++.++.+.|.+.... ++.  ++++++|++++..++          .++|++.++.   
T Consensus        81 ~~~~~~~~~~~~~g-~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~~----------~v~v~~~~g~---  143 (391)
T PRK07588         81 KADLNVDSFRRMVG-DDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHRD----------GVRVTFERGT---  143 (391)
T ss_pred             EEEecHHHccccCC-CceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECCC----------eEEEEECCCC---
Confidence            01111000000000 000124556666666554332 344  899999999987643          6778877654   


Q ss_pred             EEEEEeCEEEEccCCCCCC
Q 044575          158 VVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p  176 (454)
                        ++.+|.||.|.|.+|.-
T Consensus       144 --~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        144 --PRDFDLVIGADGLHSHV  160 (391)
T ss_pred             --EEEeCEEEECCCCCccc
Confidence              67899999999965543

>PRK06753 hypothetical protein; Provisional

Probab=98.95  E-value=5.9e-09  Score=102.85  Aligned_cols=139  Identities=21%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCCCCCCC-----Cc-----cccccccceecCCccccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDPNTDQT-----EV-----HSSVYASLRLTSPREIMG   80 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~   80 (454)
                      +|+|||||++|+++|..|++.|++|+|+|+++.+.-.   ....+..-..     ..     .......+....+... .
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~   80 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L   80 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence            7999999999999999999999999999998865311   1100000000     00     0000011111111000 0


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575           81 YTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE  160 (454)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (454)
                      +...++..  + ......++..+.+.|.+.+..  .  .++++++|++|+..++          .++|++.++.     +
T Consensus        81 ~~~~~~~~--~-~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~  138 (373)
T PRK06753         81 LNKVKLKS--N-TLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENETD----------KVTIHFADGE-----S  138 (373)
T ss_pred             Eeeccccc--C-CccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecCC----------cEEEEECCCC-----E
Confidence            00111110  0 111224667777777665542  2  3889999999986533          6778776654     6


Q ss_pred             EEeCEEEEccCCCCC
Q 044575          161 EVFDAVVVATGHYSY  175 (454)
Q Consensus       161 ~~~d~vViAtG~~~~  175 (454)
                      +.+|.||.|.|.+|.
T Consensus       139 ~~~~~vigadG~~S~  153 (373)
T PRK06753        139 EAFDLCIGADGIHSK  153 (373)
T ss_pred             EecCEEEECCCcchH
Confidence            799999999996553

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.94  E-value=1.5e-08  Score=76.09  Aligned_cols=71  Identities=23%  Similarity=0.301  Sum_probs=60.6

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRD   93 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (454)
                      +|+|||||+.|+.+|..|++.|.+|+++++++.+...                                           
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-------------------------------------------   37 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-------------------------------------------   37 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence            5899999999999999999999999999998754211                                           


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCC
Q 044575           94 VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC  134 (454)
Q Consensus        94 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~  134 (454)
                           -.+++..++.+..++.++.  +++++.|.+++..++
T Consensus        38 -----~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~   71 (80)
T PF00070_consen   38 -----FDPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGD   71 (80)
T ss_dssp             -----SSHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETT
T ss_pred             -----cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCC
Confidence                 1167888889999988988  999999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.94  E-value=1e-08  Score=101.78  Aligned_cols=144  Identities=19%  Similarity=0.095  Sum_probs=81.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCC--CCCC--Ccc-cccccccee--cCCcccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPN--TDQT--EVH-SSVYASLRL--TSPREIMGY   81 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~--~~~~--~~~-~~~~~~~~~--~~~~~~~~~   81 (454)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+....   .|.....  .+..  .+. ...++.+..  ..+...+.+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   84 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV   84 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence            47999999999999999999999999999999876532   2211000  0000  000 000010000  000000000


Q ss_pred             C-----CCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575           82 T-----DFPFVLKKGRDVR---RFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE  152 (454)
Q Consensus        82 ~-----~~~~~~~~~~~~~---~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~  152 (454)
                      .     .+.+.... ...+   ....+..+.+.|.+.+++.+ +.  +. +++|+++...++          .+.|++.+
T Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~~----------~~~v~~~~  150 (388)
T PRK07608         85 FGDAHARLHFSAYQ-AGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDPD----------AATLTLAD  150 (388)
T ss_pred             EECCCceeEeeccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecCC----------eEEEEECC
Confidence            0     00000000 0011   11346678888877777765 54  55 888998875543          67777765


Q ss_pred             cCCCeEEEEEeCEEEEccCCCC
Q 044575          153 KKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       153 ~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +.     ++.+|+||.|+|.++
T Consensus       151 g~-----~~~a~~vI~adG~~S  167 (388)
T PRK07608        151 GQ-----VLRADLVVGADGAHS  167 (388)
T ss_pred             CC-----EEEeeEEEEeCCCCc
Confidence            53     689999999999654

>PLN02661 Putative thiazole synthesis

Probab=98.92  E-value=8.8e-09  Score=97.86  Aligned_cols=142  Identities=19%  Similarity=0.255  Sum_probs=78.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..||+|||||++|++||..|++. |++|+|||++..+|| .|..........+..+         ....+.--+.++.. 
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~---------a~e~LeElGV~fd~-  161 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKP---------AHLFLDELGVPYDE-  161 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccH---------HHHHHHHcCCCccc-
Confidence            57999999999999999999976 899999999988876 5532111000000000         00011111233322 


Q ss_pred             CCCCCCCCC---CHHHHHHHHHHHHH-HhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC---eEEEEE
Q 044575           90 KGRDVRRFP---GHKELWLYLKDFCQ-RFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD---KVVEEV  162 (454)
Q Consensus        90 ~~~~~~~~~---~~~~~~~yl~~~~~-~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~  162 (454)
                         . ..|.   +..++...|.+.+. +.++.  +..++.|.++...++.  +.+--. .|.....++...   ....+.
T Consensus       162 ---~-dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~gr--VaGVVv-nw~~v~~~~~~~s~~dp~~I~  232 (357)
T PLN02661        162 ---Q-ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDR--VGGVVT-NWALVAQNHDTQSCMDPNVME  232 (357)
T ss_pred             ---C-CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCE--EEEEEe-ecchhhhccCCCCccceeEEE
Confidence               1 1121   22344445554443 34565  7888888888765321  110000 244333332211   234689


Q ss_pred             eCEEEEccCC
Q 044575          163 FDAVVVATGH  172 (454)
Q Consensus       163 ~d~vViAtG~  172 (454)
                      +++||+|||+
T Consensus       233 AkaVVlATGh  242 (357)
T PLN02661        233 AKVVVSSCGH  242 (357)
T ss_pred             CCEEEEcCCC
Confidence            9999999995

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.92  E-value=1e-08  Score=102.21  Aligned_cols=33  Identities=36%  Similarity=0.596  Sum_probs=31.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      .+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            479999999999999999999999999999986

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.91  E-value=1.7e-08  Score=104.54  Aligned_cols=147  Identities=19%  Similarity=0.280  Sum_probs=84.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCCCC---------CCCCcccc-cccccee-cCCc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDPNT---------DQTEVHSS-VYASLRL-TSPR   76 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~~~---------~~~~~~~~-~~~~~~~-~~~~   76 (454)
                      ..+||+||||||+|+++|..|++.|++|+|||+++.+...   +...+..         ........ .+..... ....
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~  101 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE  101 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence            4579999999999999999999999999999998765321   1111000         00000000 0000000 0001


Q ss_pred             cccccCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           77 EIMGYTDFPFVLKKGRDVRRF--PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                      ....+.   .....+...+.+  .+...+.++|.+.+.++ ++.  ++++++|++++..++          .+++++.+.
T Consensus       102 ~~~~~~---~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~----------~v~v~~~~~  166 (547)
T PRK08132        102 EVYRFD---LLPEPGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHDD----------GVTLTVETP  166 (547)
T ss_pred             eEEEec---CCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcCC----------EEEEEEECC
Confidence            111111   100000011111  35567778888877765 455  899999999987643          566665532


Q ss_pred             CCCeEEEEEeCEEEEccCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~  174 (454)
                      + + ..++.+|+||.|.|.++
T Consensus       167 ~-g-~~~i~ad~vVgADG~~S  185 (547)
T PRK08132        167 D-G-PYTLEADWVIACDGARS  185 (547)
T ss_pred             C-C-cEEEEeCEEEECCCCCc
Confidence            2 1 23689999999999655

>PRK07236 hypothetical protein; Provisional

Probab=98.91  E-value=9.5e-09  Score=101.83  Aligned_cols=147  Identities=21%  Similarity=0.203  Sum_probs=77.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      .++|+|||||++|+++|..|++.|++|+|+|+.+..    |+.....+..-..+-............+...+.+.+..-.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            479999999999999999999999999999998642    1111000000000000000000000001000111010000


Q ss_pred             CCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           88 LKKGRDV-RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        88 ~~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                      ....... .....+..+.+.|.+   .+. ...++++++|++++..++          .++|+..++.     ++.+|.|
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~~~ad~v  146 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDGD----------RVTARFADGR-----RETADLL  146 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecCC----------eEEEEECCCC-----EEEeCEE
Confidence            0000000 112234444444432   222 123899999999986543          6778777654     7899999


Q ss_pred             EEccCCCCCCC
Q 044575          167 VVATGHYSYPR  177 (454)
Q Consensus       167 ViAtG~~~~p~  177 (454)
                      |.|.|.+|.-+
T Consensus       147 IgADG~~S~vR  157 (386)
T PRK07236        147 VGADGGRSTVR  157 (386)
T ss_pred             EECCCCCchHH
Confidence            99999766443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.91  E-value=1.5e-08  Score=100.21  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC--C--CcccccC--CCCCCC---Ccccccccccee-----------
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD--V--GGQWLYD--PNTDQT---EVHSSVYASLRL-----------   72 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~--~--GG~w~~~--~~~~~~---~~~~~~~~~~~~-----------   72 (454)
                      +||+||||||+|+++|..|++.|++|+|||+.+.  .  .|.+...  ...+..   +-.-.+++.+..           
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            7999999999999999999999999999998751  1  1110000  000000   000001111110           


Q ss_pred             -cCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           73 -TSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                       ........+.......   ........+..+...|.+-+... ++.  ++++++|++++..++          ..+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~---~~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~~----------~~~v~~  148 (384)
T PRK08849         84 WEHPECRTRFHSDELNL---DQLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSAE----------GNRVTL  148 (384)
T ss_pred             EeCCCceEEecccccCC---CccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcCC----------eEEEEE
Confidence             0000000111000000   00011123445555555544443 444  888999999987643          567777


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      .++.     ++++|.||.|+|.+|.
T Consensus       149 ~~g~-----~~~~~lvIgADG~~S~  168 (384)
T PRK08849        149 ESGA-----EIEAKWVIGADGANSQ  168 (384)
T ss_pred             CCCC-----EEEeeEEEEecCCCch
Confidence            7654     7899999999996554

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.89  E-value=1.8e-08  Score=99.76  Aligned_cols=144  Identities=19%  Similarity=0.206  Sum_probs=86.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-C---CCcccccCC-------CCC--CCCc--cccccccceecCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-D---VGGQWLYDP-------NTD--QTEV--HSSVYASLRLTSPR   76 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~---~GG~w~~~~-------~~~--~~~~--~~~~~~~~~~~~~~   76 (454)
                      .+||+||||||+|+++|..|++.|++|+|||+.+ .   .|-.-...+       ...  ....  ....+.........
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            3789999999999999999999999999999972 2   110000000       000  0000  00011111111100


Q ss_pred             -cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe-ec
Q 044575           77 -EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK-EK  153 (454)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~-~~  153 (454)
                       ....+.......   .......++.++..-|.+.+...+ +.  +.++++|+.++..++          ..++++. ++
T Consensus        82 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~~----------~v~v~l~~dG  146 (387)
T COG0654          82 RRLLIFDAAELGR---GALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDGD----------GVTVTLSFDG  146 (387)
T ss_pred             ceeEEecccccCC---CcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcCC----------ceEEEEcCCC
Confidence             011111111110   012223567888899988888765 56  899999999998764          5567777 54


Q ss_pred             CCCeEEEEEeCEEEEccCCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      .     ++.+|.||-|-|.+|.
T Consensus       147 ~-----~~~a~llVgADG~~S~  163 (387)
T COG0654         147 E-----TLDADLLVGADGANSA  163 (387)
T ss_pred             c-----EEecCEEEECCCCchH
Confidence            3     8999999999996653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.88  E-value=4.7e-10  Score=112.25  Aligned_cols=141  Identities=19%  Similarity=0.149  Sum_probs=37.3

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc------cccccccceecCCccccccCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV------HSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      ||||||||+||++||..+++.|.+|+|||+.+.+||.............      ....+..+....    ......+.+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~----~~~~~~~~~   76 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL----RARGGYPQE   76 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH----hhhcccccc
Confidence            7999999999999999999999999999999999998765443211100      000111111100    000000000


Q ss_pred             CCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           88 LKKGRDV-RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        88 ~~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                      ... ... ......+.+...+.+.+.+.++.  +.+++.|.++...+..         -+.|++.+.. + ..++.++.+
T Consensus        77 ~~~-~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~---------i~~V~~~~~~-g-~~~i~A~~~  142 (428)
T PF12831_consen   77 DRY-GWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGR---------ITGVIVETKS-G-RKEIRAKVF  142 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-ccccccccccccccccccccccccccc--cccccccccccccccc---------cccccccccc-c-ccccccccc
Confidence            000 000 01233355566777777777888  9999999999876533         4556665432 2 458899999


Q ss_pred             EEccCC
Q 044575          167 VVATGH  172 (454)
Q Consensus       167 ViAtG~  172 (454)
                      |-|||-
T Consensus       143 IDaTG~  148 (428)
T PF12831_consen  143 IDATGD  148 (428)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            999993

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.88  E-value=1.6e-08  Score=100.09  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=80.9

Q ss_pred             cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCccccc----CCCCCCC---Cccccccccceec-CCccccccCC-
Q 044575           14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLY----DPNTDQT---EVHSSVYASLRLT-SPREIMGYTD-   83 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~----~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~-   83 (454)
                      ||+||||||+|+++|..|++.| ++|+|+|+.+...-.-..    ....+..   +-.-.+++.+... .+.....+.+ 
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            6999999999999999999999 999999998653210000    0000000   0000000000000 0000000000 


Q ss_pred             -----CCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           84 -----FPFVLK-KGRDVRRF-PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        84 -----~~~~~~-~~~~~~~~-~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                           ..+... .+.....| ..+.++.+.|.+.+... ++.  ++++++|+++...++          .++|++.++. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~~----------~~~v~~~~g~-  147 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQD----------YVRVTLDNGQ-  147 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcCC----------eEEEEECCCC-
Confidence                 000000 00000111 45677888888877763 666  888999999986543          6777776543 


Q ss_pred             CeEEEEEeCEEEEccCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~  174 (454)
                          ++.+|.||.|.|.++
T Consensus       148 ----~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       148 ----QLRAKLLIAADGANS  162 (382)
T ss_pred             ----EEEeeEEEEecCCCh
Confidence                689999999999655

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.87  E-value=2.1e-08  Score=101.91  Aligned_cols=153  Identities=25%  Similarity=0.258  Sum_probs=83.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC--CCcccccCCC------CCCCCc---cc--cccccce-----
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD--VGGQWLYDPN------TDQTEV---HS--SVYASLR-----   71 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~--~GG~w~~~~~------~~~~~~---~~--~~~~~~~-----   71 (454)
                      +...||||||+|++|++||.++++.|.+|+||||.+.  .||.-.....      ......   .+  ..+..+.     
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG   81 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence            3458999999999999999999999999999999874  5553221110      000000   00  0000000     


Q ss_pred             -----------ecCCcccccc--CCCCCCCCC-CC----CCCC-C-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575           72 -----------LTSPREIMGY--TDFPFVLKK-GR----DVRR-F-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM  131 (454)
Q Consensus        72 -----------~~~~~~~~~~--~~~~~~~~~-~~----~~~~-~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~  131 (454)
                                 .+.+...-.+  .+.++.... +.    .... + .....+...+.+.+++.++.  ++++++|+++..
T Consensus        82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~  159 (466)
T PRK08274         82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALEL  159 (466)
T ss_pred             CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEe
Confidence                       0000000000  111111100 00    0000 0 12456777888888888887  999999999986


Q ss_pred             cCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+..         -.-|...+. ++....+.++.||+|||.+.
T Consensus       160 ~~g~---------v~gv~~~~~-~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        160 DDGR---------FVGARAGSA-AGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             cCCe---------EEEEEEEcc-CCceEEEECCEEEECCCCCC
Confidence            4321         223433221 23344678999999999654

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.86  E-value=2.1e-08  Score=99.76  Aligned_cols=146  Identities=17%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCccc-ccCCCCCC------CCc-cccccccceecC-Ccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQW-LYDPNTDQ------TEV-HSSVYASLRLTS-PREIM   79 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w-~~~~~~~~------~~~-~~~~~~~~~~~~-~~~~~   79 (454)
                      .+||+||||||+|+++|..|++.   |++|+|||+....+-.. .+..+...      ..+ .-.+++.+.... +...+
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   82 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI   82 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence            47999999999999999999998   99999999953111000 00000000      000 000111110000 00000


Q ss_pred             ccCC---C---CCCC-CCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           80 GYTD---F---PFVL-KKGRDVR-RFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        80 ~~~~---~---~~~~-~~~~~~~-~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      .+.+   .   .+.. ..+.... ....+.++.+.+.+.+... ++.  ++++++|+++...++          .|.|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~~----------~~~v~~  150 (395)
T PRK05732         83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQG----------SVRVTL  150 (395)
T ss_pred             EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcCC----------eEEEEE
Confidence            0000   0   0000 0000000 1133456666666655543 454  788999999876543          677877


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .++.     .+.+|+||.|.|.++
T Consensus       151 ~~g~-----~~~a~~vI~AdG~~S  169 (395)
T PRK05732        151 DDGE-----TLTGRLLVAADGSHS  169 (395)
T ss_pred             CCCC-----EEEeCEEEEecCCCh
Confidence            6553     689999999999644

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.86  E-value=2.5e-08  Score=101.55  Aligned_cols=39  Identities=28%  Similarity=0.488  Sum_probs=35.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGG   49 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG   49 (454)
                      ..+||+|||||+||+.||..+++.|.+|+++|++. .+|+
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence            35899999999999999999999999999999974 5664

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.84  E-value=3.3e-08  Score=99.74  Aligned_cols=150  Identities=25%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccccCCC---C-CC----------C-------Ccc-------c
Q 044575           14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPN---T-DQ----------T-------EVH-------S   64 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~~~~---~-~~----------~-------~~~-------~   64 (454)
                      ||||||||.||++||.++++.| .+|+|+||.+..||.-.....   . .+          .       .+.       .
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            7999999999999999999999 999999999887765322110   0 00          0       000       0


Q ss_pred             cccccceecCCcc--ccccCCCCCCC-----CCCC--CC-----CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEE
Q 044575           65 SVYASLRLTSPRE--IMGYTDFPFVL-----KKGR--DV-----RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG  130 (454)
Q Consensus        65 ~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~--~~-----~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~  130 (454)
                      .....+..+.+..  .+. .+.++..     ..+.  ..     .......++.+.+.+.+++.++.  ++++++|+++.
T Consensus        81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~  157 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI  157 (439)
T ss_pred             HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence            0000000000000  000 0111110     0000  00     11134567888999999988887  99999999998


Q ss_pred             EcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ..+++.        .+.|.+.+.+ +....+.+|.||+|||.++.
T Consensus       158 ~~~~g~--------v~Gv~~~~~~-g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       158 QDDQGT--------VVGVVVKGKG-KGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             ECCCCc--------EEEEEEEeCC-CeEEEEecceEEEecCCCCC
Confidence            754321        2334444322 33445789999999996554

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.84  E-value=6.4e-08  Score=99.04  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=36.2

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      |++.+||+|||||..|+++|+.|++.|++|+|||+++..+|
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G   43 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA   43 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            45669999999999999999999999999999999765433

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.83  E-value=3.9e-08  Score=98.76  Aligned_cols=147  Identities=22%  Similarity=0.270  Sum_probs=82.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC----CCcccccC----CCCCCCCccccccccceecCCccccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD----VGGQWLYD----PNTDQTEVHSSVYASLRLTSPREIMGYT   82 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~----~GG~w~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ..+||+||||||||++||..|++.|++|+|+|+...    .||.....    -..+..... .....++...|....  .
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~-~~i~~~~~~~p~~~~--v  114 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIID-RKVTKMKMISPSNVA--V  114 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHH-HHhhhheEecCCceE--E
Confidence            368999999999999999999999999999999753    12211000    000000000 000111111111100  0


Q ss_pred             CCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC----C
Q 044575           83 DFPFVLKKGRDVRRF---PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK----A  155 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~---~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~----~  155 (454)
                      +++...    ....|   ..++.+.++|.+.+.+.|..  ++.+ ++.+++.....      ++ .+.|++.+..    +
T Consensus       115 ~~~~~~----~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~------~~-~~~v~~~~~~~~~~~  180 (450)
T PLN00093        115 DIGKTL----KPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDP------NG-PYVIHYTSYDSGSGA  180 (450)
T ss_pred             EecccC----CCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCC------CC-cEEEEEEeccccccC
Confidence            000000    01122   57888999999999888876  5544 57777643211      01 5667665420    1


Q ss_pred             CeEEEEEeCEEEEccCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~  174 (454)
                      ++..++++|.||.|+|.+|
T Consensus       181 g~~~~v~a~~VIgADG~~S  199 (450)
T PLN00093        181 GTPKTLEVDAVIGADGANS  199 (450)
T ss_pred             CCccEEEeCEEEEcCCcch
Confidence            2234789999999999544

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.83  E-value=3e-08  Score=99.19  Aligned_cols=140  Identities=17%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcc---cccCCCCCCCCcccccccccee---cCCc--c--ccccC
Q 044575           14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ---WLYDPNTDQTEVHSSVYASLRL---TSPR--E--IMGYT   82 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~---w~~~~~~~~~~~~~~~~~~~~~---~~~~--~--~~~~~   82 (454)
                      +|+|||||++|+++|..|++.| .+|+|||+.+.++..   ....++.-..+-...+.+.+..   ..+.  .  .+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 599999998875421   1111110000000000000000   0000  0  00000


Q ss_pred             --------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575           83 --------DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK  154 (454)
Q Consensus        83 --------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~  154 (454)
                              ......  + ....-..+.++.+.|.+.+.  .  ..++++++|++|+..++          .|+|+..++.
T Consensus        82 ~~~~~~~~~~~~~~--~-~~~~~i~R~~l~~~L~~~~~--~--~~v~~~~~v~~i~~~~~----------~~~v~~~~g~  144 (414)
T TIGR03219        82 NGSDASYLGATIAP--G-VGQSSVHRADFLDALLKHLP--E--GIASFGKRATQIEEQAE----------EVQVLFTDGT  144 (414)
T ss_pred             ecCccceeeeeccc--c-CCcccCCHHHHHHHHHHhCC--C--ceEEcCCEEEEEEecCC----------cEEEEEcCCC
Confidence                    000000  0 00112355666666665442  1  23789999999987543          7888887654


Q ss_pred             CCeEEEEEeCEEEEccCCCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~  175 (454)
                           ++.+|.||.|.|.+|.
T Consensus       145 -----~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       145 -----EYRCDLLIGADGIKSA  160 (414)
T ss_pred             -----EEEeeEEEECCCccHH
Confidence                 6899999999997664

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.83  E-value=4.2e-08  Score=96.18  Aligned_cols=144  Identities=15%  Similarity=0.209  Sum_probs=82.9

Q ss_pred             cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc--ccccCCCCCCCC-------ccccccccceecCCccccccC
Q 044575           14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG--QWLYDPNTDQTE-------VHSSVYASLRLTSPREIMGYT   82 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG--~w~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ||+|||||+||+++|..|++.  |++|+++|+.+.+||  +|.+........       +-...|.......+.      
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~------   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK------   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcc------
Confidence            799999999999999999987  999999999988887  465543211110       011122222211111      


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV  162 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (454)
                       .....  + .........++.+++.+.+   +..  +.++++|.+++..            .  |++.++.     ++.
T Consensus        75 -~~~~l--~-~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~~~------------~--v~l~dg~-----~~~  126 (370)
T TIGR01789        75 -YRRKL--K-TAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLDAD------------G--VDLAPGT-----RIN  126 (370)
T ss_pred             -hhhhc--C-CCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEeCC------------E--EEECCCC-----EEE
Confidence             10000  0 0011234566666664332   333  7778899988321            4  4445554     789


Q ss_pred             eCEEEEccCCCCCCCCCCCCCcCCccceeEE
Q 044575          163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMH  193 (454)
Q Consensus       163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~  193 (454)
                      +|.||-|.|..  +..+...|...|.|....
T Consensus       127 A~~VI~A~G~~--s~~~~~~~~Q~f~G~~~r  155 (370)
T TIGR01789       127 ARSVIDCRGFK--PSAHLKGGFQVFLGREMR  155 (370)
T ss_pred             eeEEEECCCCC--CCccccceeeEEEEEEEE
Confidence            99999999954  322222455555544433

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.82  E-value=3.4e-08  Score=97.39  Aligned_cols=141  Identities=13%  Similarity=0.147  Sum_probs=81.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC-------CcccccCCCCCCC-----C---cc--ccccccceecCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-------GGQWLYDPNTDQT-----E---VH--SSVYASLRLTSP   75 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~-------GG~w~~~~~~~~~-----~---~~--~~~~~~~~~~~~   75 (454)
                      .||+|||||++|+++|..|++.|++|+|+|+.+..       +......+..-..     .   +.  ...+..+....+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            58999999999999999999999999999986321       1111111000000     0   00  000111111000


Q ss_pred             c--cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575           76 R--EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE  152 (454)
Q Consensus        76 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~  152 (454)
                      .  ....+..   ..  .........+.++.+.|.+-+...+ +.  ++++++|+++...++          .+.|.+.+
T Consensus        82 ~g~~~~~~~~---~~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~----------~v~v~~~~  144 (374)
T PRK06617         82 KASEILDLRN---DA--DAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHND----------YSIIKFDD  144 (374)
T ss_pred             CCceEEEecC---CC--CCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcCC----------eEEEEEcC
Confidence            0  0111111   00  0001122467788888888777664 44  778999999876543          56676643


Q ss_pred             cCCCeEEEEEeCEEEEccCCCCCC
Q 044575          153 KKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       153 ~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                       .     ++++|.||.|.|.+|.-
T Consensus       145 -~-----~~~adlvIgADG~~S~v  162 (374)
T PRK06617        145 -K-----QIKCNLLIICDGANSKV  162 (374)
T ss_pred             -C-----EEeeCEEEEeCCCCchh
Confidence             1     78999999999976644

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.80  E-value=3.8e-08  Score=99.10  Aligned_cols=154  Identities=16%  Similarity=0.165  Sum_probs=81.5

Q ss_pred             CcEEEECcChHHHHHHHHHHH----cCCcEEEEeeCCCCCcc---cc-----cCCC----CCCC---Cccccccccceec
Q 044575           13 KNVCVIGAGPSGLVAARELRK----EGHRVVVLEQNHDVGGQ---WL-----YDPN----TDQT---EVHSSVYASLRLT   73 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~----~g~~v~vie~~~~~GG~---w~-----~~~~----~~~~---~~~~~~~~~~~~~   73 (454)
                      +||+||||||+|+++|..|++    .|++|+|||+++...-.   +.     +...    .+..   +-...+++.+...
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            589999999999999999998    79999999995422100   00     0000    0000   0000011111100


Q ss_pred             --CCccccccC------CCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhC---CCccEEeCeEEEEEEEcCCCccccCC
Q 044575           74 --SPREIMGYT------DFPFVLKKGRD-VRRFPGHKELWLYLKDFCQRFG---LREMIRFNTRVEYVGMLDCGELIIGN  141 (454)
Q Consensus        74 --~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~~  141 (454)
                        .+...+.+.      ...++...+.. .....++..+.+.|.+.+.+.+   +.  ++++++|++++......   +.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~---~~  155 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYP---ND  155 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccc---cC
Confidence              000000000      00111100000 1112456778888887777664   44  88999999997531000   00


Q ss_pred             cCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575          142 DLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      +....+|++.++.     ++++|.||.|.|.+|.-
T Consensus       156 ~~~~v~v~~~~g~-----~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       156 NSNWVHITLSDGQ-----VLYTKLLIGADGSNSNV  185 (437)
T ss_pred             CCCceEEEEcCCC-----EEEeeEEEEecCCCChh
Confidence            0005667776554     78999999999966543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06996 hypothetical protein; Provisional

Probab=98.80  E-value=4.9e-08  Score=97.11  Aligned_cols=143  Identities=13%  Similarity=0.079  Sum_probs=82.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcC----CcEEEEeeCCCCCcccccCCCC---CCC--------Cccc--ccccccee
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEG----HRVVVLEQNHDVGGQWLYDPNT---DQT--------EVHS--SVYASLRL   72 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g----~~v~vie~~~~~GG~w~~~~~~---~~~--------~~~~--~~~~~~~~   72 (454)
                      ...+||+||||||+|+++|..|++.|    .+|+|+|+.+... ........   +..        .+..  ..+.....
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~-~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~   87 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA-SANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV   87 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc-CCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence            44689999999999999999999987    4799999975321 00000000   000        0000  00001100


Q ss_pred             cC--C--ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575           73 TS--P--REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV  148 (454)
Q Consensus        73 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v  148 (454)
                      ..  .  .......++..+     ......++.++.+.|.+.+...++.  +.+++++++++...+          .+++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~-----~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~~----------~v~v  150 (398)
T PRK06996         88 SQRGHFGRTLIDRDDHDVP-----ALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDAD----------GVTL  150 (398)
T ss_pred             ecCCCCceEEecccccCCC-----cCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecCC----------eEEE
Confidence            00  0  000111111111     0011245678888888888877765  888999999876543          6777


Q ss_pred             EEeecCCCeEEEEEeCEEEEccCC
Q 044575          149 KSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus       149 ~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      +..+++ + ..++++|+||.|.|.
T Consensus       151 ~~~~~~-g-~~~i~a~lvIgADG~  172 (398)
T PRK06996        151 ALGTPQ-G-ARTLRARIAVQAEGG  172 (398)
T ss_pred             EECCCC-c-ceEEeeeEEEECCCC
Confidence            766542 1 247899999999993

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.80  E-value=9.9e-08  Score=97.65  Aligned_cols=40  Identities=33%  Similarity=0.576  Sum_probs=37.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ..+||||||+|.||++||..+++.|.+|+||||.+.+||.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~   99 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN   99 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence            4689999999999999999999999999999999888774

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.80  E-value=3.3e-08  Score=98.47  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC---CcccccCCCCCCCCccccccccceec-CCccccccCC-C---
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV---GGQWLYDPNTDQTEVHSSVYASLRLT-SPREIMGYTD-F---   84 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~---GG~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~---   84 (454)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+.+   |......+..-..+-.-.+++.+... .+...+.+.+ .   
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            68999999999999999999999999999998764   22211111100000000001110000 0000000000 0   


Q ss_pred             -----CCCC-CCCCCCCCC--CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           85 -----PFVL-KKGRDVRRF--PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        85 -----~~~~-~~~~~~~~~--~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                           .+.. ........|  .++.++.+.|.+.+.+. ++.  ++++++|++++..++          .+++++.++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~~----------~v~v~~~~~~~  150 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTGN----------SITATIIRTNS  150 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCCC----------ceEEEEEeCCC
Confidence                 0000 000001112  35677888887766553 455  899999999976533          56676654321


Q ss_pred             CeEEEEEeCEEEEccCCCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~p  176 (454)
                        ..++.+|.||-|.|.+|.-
T Consensus       151 --~~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        151 --VETVSAAYLIACDGVWSML  169 (400)
T ss_pred             --CcEEecCEEEECCCccHhH
Confidence              1267899999999976644

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.80  E-value=7.5e-09  Score=74.70  Aligned_cols=37  Identities=51%  Similarity=0.681  Sum_probs=34.5

Q ss_pred             EECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        17 IIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      |||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence            8999999999999999999999999999999999874

...

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.79  E-value=2.3e-07  Score=94.40  Aligned_cols=145  Identities=19%  Similarity=0.257  Sum_probs=93.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+.                                    |      
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il------------------------------------~------  217 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL------------------------------------P------  217 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC------------------------------------C------
Confidence            4789999999999999999999999999999976430                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+++...++         +.. +...++   ...++.||.||+|+
T Consensus       218 ----~--~~~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~---------~~~~~~~~~g---~~~~i~~D~vi~a~  277 (472)
T PRK05976        218 ----T--EDAELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDG---------GVLIVAEHNG---EEKTLEADKVLVSV  277 (472)
T ss_pred             ----c--CCHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCC---------CEEEEEEeCC---ceEEEEeCEEEEee
Confidence                0  0155667777777778887  8999999999752111         222 222222   23468999999999


Q ss_pred             CCCCCCCCCCCCCcCC-----ccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575          171 GHYSYPRLPSIKGMDK-----WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELV  225 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~-----~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~  225 (454)
                      |  ..|+...+ +++.     -.+.+. ...+.   +...++|-++|....+.+++....
T Consensus       278 G--~~p~~~~l-~l~~~~~~~~~g~i~-Vd~~l---~ts~~~IyAiGD~~~~~~~~~~A~  330 (472)
T PRK05976        278 G--RRPNTEGI-GLENTDIDVEGGFIQ-IDDFC---QTKERHIYAIGDVIGEPQLAHVAM  330 (472)
T ss_pred             C--CccCCCCC-CchhcCceecCCEEE-ECCCc---ccCCCCEEEeeecCCCcccHHHHH
Confidence            9  78876532 1111     111111 11111   112367899998765554444333

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.79  E-value=5e-08  Score=96.85  Aligned_cols=149  Identities=20%  Similarity=0.168  Sum_probs=79.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC------CcccccCCCC------C--CCCcc-ccccccceecCCcc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV------GGQWLYDPNT------D--QTEVH-SSVYASLRLTSPRE   77 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~------GG~w~~~~~~------~--~~~~~-~~~~~~~~~~~~~~   77 (454)
                      +||+||||||+|+++|..|++.|++|+|+|+.+..      ++.....+..      .  ..... ..............
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            68999999999999999999999999999998741      1111000000      0  00000 00000010000000


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           78 IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                      ..   .++++...+.......++.++.+.+.+.+...++.  ++++++|++++..+..         .-.|++...  ++
T Consensus        83 ~~---~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~---------~~~V~~~~~--G~  146 (392)
T PRK08243         83 RH---RIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSD---------RPYVTYEKD--GE  146 (392)
T ss_pred             EE---EeccccccCCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCC---------ceEEEEEcC--Ce
Confidence            00   11111100000001123445555555555556666  8999999998752222         334555321  33


Q ss_pred             EEEEEeCEEEEccCCCCCCC
Q 044575          158 VVEEVFDAVVVATGHYSYPR  177 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~  177 (454)
                      ..++++|+||-|.|.+|.-+
T Consensus       147 ~~~i~ad~vVgADG~~S~vR  166 (392)
T PRK08243        147 EHRLDCDFIAGCDGFHGVSR  166 (392)
T ss_pred             EEEEEeCEEEECCCCCCchh
Confidence            45789999999999766443

>PRK07121 hypothetical protein; Validated

Probab=98.78  E-value=5.9e-08  Score=99.19  Aligned_cols=41  Identities=39%  Similarity=0.579  Sum_probs=37.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      ...||||||+|.||++||.++++.|.+|+|+||.+..||.-
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            36899999999999999999999999999999998877643

>PRK05868 hypothetical protein; Validated

Probab=98.77  E-value=4.4e-08  Score=96.44  Aligned_cols=35  Identities=34%  Similarity=0.436  Sum_probs=32.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      +||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            58999999999999999999999999999998764

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.77  E-value=4.3e-08  Score=95.72  Aligned_cols=59  Identities=29%  Similarity=0.316  Sum_probs=45.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .....+...+.+.+++.|+.  ++.+++|.+|+..+.          +|+ |.+.++      .+.+|+||+|+|.++
T Consensus       144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~----------~v~gv~~~~g------~i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDGG----------RVTGVRTSDG------EIRADRVVLAAGAWS  203 (358)
T ss_dssp             EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEETT----------EEEEEEETTE------EEEECEEEE--GGGH
T ss_pred             ccccchhhhhHHHHHHhhhh--ccccccccchhhccc----------cccccccccc------ccccceeEecccccc
Confidence            34678889999999999988  999999999998754          677 777654      589999999999643

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.77  E-value=2e-07  Score=94.73  Aligned_cols=103  Identities=24%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+.                                    |.     
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------------------------~~-----  208 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------------------------------PG-----  208 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC------------------------------------CC-----
Confidence            4689999999999999999999999999999976431                                    00     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+..++.++.  ++++++|.+|+..++          ...+...++   ...++.+|.||+|+|
T Consensus       209 -------~~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~----------~v~v~~~~g---~~~~i~~D~vi~a~G  266 (461)
T TIGR01350       209 -------EDAEVSKVVAKALKKKGVK--ILTNTKVTAVEKNDD----------QVVYENKGG---ETETLTGEKVLVAVG  266 (461)
T ss_pred             -------CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCC----------EEEEEEeCC---cEEEEEeCEEEEecC
Confidence                   0145666777777777877  899999999976532          444544332   133689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       267 --~~p~~~  272 (461)
T TIGR01350       267 --RKPNTE  272 (461)
T ss_pred             --CcccCC
Confidence              777765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.76  E-value=1.5e-07  Score=93.65  Aligned_cols=105  Identities=27%  Similarity=0.339  Sum_probs=83.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+..|..+++.|.+|+|+|+.+.+                                    .|..    
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i------------------------------------Lp~~----  212 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI------------------------------------LPGE----  212 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC------------------------------------CCcC----
Confidence            468999999999999999999999999999998764                                    1111    


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                              .+++.+.+.+..++.++.  ++++++|..++..++          .-.+++.++..+   ++++|+|++|+|
T Consensus       213 --------D~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~~----------~v~v~~~~g~~~---~~~ad~vLvAiG  269 (454)
T COG1249         213 --------DPEISKELTKQLEKGGVK--ILLNTKVTAVEKKDD----------GVLVTLEDGEGG---TIEADAVLVAIG  269 (454)
T ss_pred             --------CHHHHHHHHHHHHhCCeE--EEccceEEEEEecCC----------eEEEEEecCCCC---EEEeeEEEEccC
Confidence                    178899999988886676  899999999987643          345566554322   678999999999


Q ss_pred             CCCCCCCCCC
Q 044575          172 HYSYPRLPSI  181 (454)
Q Consensus       172 ~~~~p~~p~i  181 (454)
                        .+|++..+
T Consensus       270 --R~Pn~~~L  277 (454)
T COG1249         270 --RKPNTDGL  277 (454)
T ss_pred             --CccCCCCC
Confidence              88887744

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.76  E-value=1.9e-07  Score=97.85  Aligned_cols=157  Identities=15%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccccCCCCCCC------------Ccc-------ccccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYDPNTDQT------------EVH-------SSVYA   68 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~~~~~~~~~------------~~~-------~~~~~   68 (454)
                      |.+..||+||||||+||++|..|++. |.+|+|||+.+..--.-.-....+..            ...       ...|.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~  108 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK  108 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence            45678999999999999999999995 99999999986431000000000000            000       00010


Q ss_pred             cceecCCccccc---cCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCC
Q 044575           69 SLRLTSPREIMG---YTDFPFVLKKGRDVR-RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLI  144 (454)
Q Consensus        69 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~  144 (454)
                      ... .....+..   +.+.+...   ...+ ...++..+.+.|.+.+.+.+....++++++|++++..++.      .. 
T Consensus       109 ~~~-~~~~~i~r~~~~~~~~~~~---~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~------~~-  177 (634)
T PRK08294        109 PDP-ADPSTIVRTGRVQDTEDGL---SEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEG------EY-  177 (634)
T ss_pred             CCC-ccccceeccccccccCCCC---CCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCC------CC-
Confidence            000 00000000   00000000   0011 1234566778888877776643237889999999866421      01 


Q ss_pred             cEEEEEeecC---CCeEEEEEeCEEEEccCCCCCC
Q 044575          145 KWVVKSKEKK---ADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       145 ~~~v~~~~~~---~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      ..+|++.+.+   ++...++++|+||-|-|.+|.-
T Consensus       178 ~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V  212 (634)
T PRK08294        178 PVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV  212 (634)
T ss_pred             CEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence            4667776431   2334588999999999966543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=8.8e-08  Score=99.77  Aligned_cols=48  Identities=23%  Similarity=0.340  Sum_probs=38.8

Q ss_pred             CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575            1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus         1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ||+.+. ......||||||||.||++||.++++.|.+|+|+||....+|
T Consensus         2 ~~~~~~-~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g   49 (598)
T PRK09078          2 MMSAYK-IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS   49 (598)
T ss_pred             Cccccc-ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence            675542 123468999999999999999999999999999999865444

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.75  E-value=1.6e-07  Score=94.10  Aligned_cols=151  Identities=28%  Similarity=0.325  Sum_probs=84.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC------C-CCC------C---------------Ccccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP------N-TDQ------T---------------EVHSS   65 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~------~-~~~------~---------------~~~~~   65 (454)
                      ||||||+|.||++||.++++.|.+|+|+||.+..||.-.+..      . ...      +               .....
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD   80 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence            799999999999999999999999999999998777433221      0 000      0               00000


Q ss_pred             ccccceecCCcccccc--CCCCCCC---------CCC---CC------C-----CCCCCHHHHHHHHHHHHHHhCCCccE
Q 044575           66 VYASLRLTSPREIMGY--TDFPFVL---------KKG---RD------V-----RRFPGHKELWLYLKDFCQRFGLREMI  120 (454)
Q Consensus        66 ~~~~~~~~~~~~~~~~--~~~~~~~---------~~~---~~------~-----~~~~~~~~~~~yl~~~~~~~~~~~~i  120 (454)
                      +...+..+.+..+-.+  .+.++..         ..+   ..      .     ........+...+.+.+++.++.  +
T Consensus        81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~--i  158 (417)
T PF00890_consen   81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVD--I  158 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEE--E
T ss_pred             hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCee--e
Confidence            0000000000000000  0111111         000   00      0     11225678889999999999977  9


Q ss_pred             EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          121 RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       121 ~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      +++++|+++...+..         ---|...+..++....+.++.||+|||.+..
T Consensus       159 ~~~~~~~~Li~e~g~---------V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  159 RFNTRVTDLITEDGR---------VTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             EESEEEEEEEEETTE---------EEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             eccceeeeEEEeCCc---------eeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            999999999886432         2334445334466778999999999996654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.73  E-value=1e-07  Score=93.15  Aligned_cols=63  Identities=25%  Similarity=0.279  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      ...++...+.+.++..+..  +++|++|+.|++..++         .+.+.+.+++   .. ++++.||.|.|.++.+
T Consensus       151 ~~~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg---------~~~~~~~~g~---~~-~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         151 DPGELTRALAEEAQANGVE--LRLNTEVTGIEKQSDG---------VFVLNTSNGE---ET-LEAKFVINAAGLYADP  213 (429)
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCc---------eEEEEecCCc---EE-EEeeEEEECCchhHHH
Confidence            3456666666667777887  9999999999998753         3555555543   22 8999999999987644

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.72  E-value=8e-08  Score=95.24  Aligned_cols=149  Identities=19%  Similarity=0.140  Sum_probs=77.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC------CcccccCCCCCCCCcccccccccee-cCCcccccc----
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV------GGQWLYDPNTDQTEVHSSVYASLRL-TSPREIMGY----   81 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~------GG~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----   81 (454)
                      +||+|||||++|+++|..|++.|++|+|||+.+..      |......+.. ..+-...+++.+.. ..+...+.+    
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~-~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTV-DLLREAGVDERMDREGLVHEGTEIAFDG   81 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHH-HHHHHCCChHHHHhcCceecceEEeeCC
Confidence            68999999999999999999999999999998741      1111100000 00000000111000 000000000    


Q ss_pred             --CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           82 --TDFPFVLKKGRDVRR-FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        82 --~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                        ..+++..... .... ......+.+-|.+.+...+..  ++++.+++.+...+..         ...|++...  +..
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~---------~~~V~~~~~--g~~  147 (390)
T TIGR02360        82 QRFRIDLKALTG-GKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGD---------RPYVTFERD--GER  147 (390)
T ss_pred             EEEEEeccccCC-CceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCC---------ccEEEEEEC--CeE
Confidence              0111111000 0000 112345556666666666655  7888887777543322         445666421  223


Q ss_pred             EEEEeCEEEEccCCCCCC
Q 044575          159 VEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p  176 (454)
                      .++++|.||-|.|.+|.-
T Consensus       148 ~~i~adlvIGADG~~S~V  165 (390)
T TIGR02360       148 HRLDCDFIAGCDGFHGVS  165 (390)
T ss_pred             EEEEeCEEEECCCCchhh
Confidence            468899999999976643

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.71  E-value=2.1e-08  Score=75.31  Aligned_cols=68  Identities=29%  Similarity=0.500  Sum_probs=55.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh--------hc-cCCCeEEcCceeEEecCC-c--EEEeCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV--------IS-KHNNLHLHPQIDCLREDG-R--VTFVDG  274 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~~-~--v~~~dG  274 (454)
                      +|+|||||++|+|+|..|++.+++|+++++++.+.+.+++.        +. ..++++.+..++++..++ .  |+++||
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            68999999999999999999999999999999986544332        22 235889999999997554 2  778776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.70  E-value=5e-07  Score=91.72  Aligned_cols=105  Identities=23%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  209 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP------------------------------------------  209 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC------------------------------------------
Confidence            36899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+|+..++          ...+.+.++  +...++.+|.||+|+|
T Consensus       210 ----~--~~~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~----------~v~v~~~~g--g~~~~i~~D~vi~a~G  269 (462)
T PRK06416        210 ----G--EDKEISKLAERALKKRGIK--IKTGAKAKKVEQTDD----------GVTVTLEDG--GKEETLEADYVLVAVG  269 (462)
T ss_pred             ----c--CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCC----------EEEEEEEeC--CeeEEEEeCEEEEeeC
Confidence                0  0146667777777778887  999999999986532          455555543  2234789999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+...
T Consensus       270 --~~p~~~~  276 (462)
T PRK06416        270 --RRPNTEN  276 (462)
T ss_pred             --CccCCCC
Confidence              7777653

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.70  E-value=2.1e-07  Score=95.29  Aligned_cols=62  Identities=18%  Similarity=0.107  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          101 KELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       101 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ..+...+...+.+.|..  +..+++|+++...++          .|.|++.++. ++..++.++.||.|+|.++.
T Consensus       155 ~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~~----------~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        155 ARLVVLNALDAAERGAT--ILTRTRCVSARREGG----------LWRVETRDAD-GETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHHHHHHHHHHHCCCE--EecCcEEEEEEEcCC----------EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence            44445555667777877  888999999887532          6788877754 45567899999999997653

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.70  E-value=1.9e-07  Score=94.60  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      +||+|||||.||++||..+++.|.+|+|+||....
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~   36 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK   36 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            68999999999999999999999999999997643

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.67  E-value=2.4e-07  Score=92.05  Aligned_cols=36  Identities=33%  Similarity=0.582  Sum_probs=33.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG   48 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G   48 (454)
                      +||+|||||.+|+++|.+|++.  |.+|+|+|+.+.+|
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~   40 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA   40 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence            6999999999999999999998  99999999987554

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.67  E-value=5.3e-07  Score=90.93  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG   48 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G   48 (454)
                      ..+||||||||.+|+++|..|++.  +.+|+|+||.+.+|
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            457999999999999999999998  89999999955655

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.66  E-value=3e-07  Score=92.71  Aligned_cols=100  Identities=24%  Similarity=0.296  Sum_probs=76.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  195 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------------------------------------  195 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence            468999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++...+.+..++.++.  +.++++|++|+..+.          ...+.. ++.     ++.||.||+|+|
T Consensus       196 -------~~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~~----------~v~v~~-~g~-----~i~~D~viva~G  250 (438)
T PRK07251        196 -------EEPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDGD----------QVLVVT-EDE-----TYRFDALLYATG  250 (438)
T ss_pred             -------CCHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecCC----------EEEEEE-CCe-----EEEcCEEEEeeC
Confidence                   0145667777778888887  889999999986432          333332 222     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       251 --~~p~~~  256 (438)
T PRK07251        251 --RKPNTE  256 (438)
T ss_pred             --CCCCcc
Confidence              788764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.66  E-value=4.2e-07  Score=90.83  Aligned_cols=35  Identities=31%  Similarity=0.569  Sum_probs=32.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      +||+|||||..|+++|.+|++.|.+|+|+|+++.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            58999999999999999999999999999998754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.66  E-value=8.5e-07  Score=89.84  Aligned_cols=102  Identities=16%  Similarity=0.227  Sum_probs=76.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------  207 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------------------------------  207 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------------------------------
Confidence            46899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+++..+.          ...+.  ..  +...++.||.||+|+|
T Consensus       208 ----~--~d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~~----------~v~~~--~~--g~~~~i~~D~vivA~G  265 (458)
T PRK06912        208 ----G--EDEDIAHILREKLENDGVK--IFTGAALKGLNSYKK----------QALFE--YE--GSIQEVNAEFVLVSVG  265 (458)
T ss_pred             ----c--ccHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcCC----------EEEEE--EC--CceEEEEeCEEEEecC
Confidence                0  0156777777778888888  899999999975421          23332  21  2233689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       266 --~~p~~~  271 (458)
T PRK06912        266 --RKPRVQ  271 (458)
T ss_pred             --CccCCC
Confidence              788765

>PRK06116 glutathione reductase; Validated

Probab=98.65  E-value=4e-07  Score=92.13  Aligned_cols=102  Identities=19%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  204 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------  204 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence            47899999999999999999999999999998763210                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  +.++++|.+++..+++         ...+.+.++.     ++.+|.||+|+|
T Consensus       205 ----~--~~~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g---------~~~v~~~~g~-----~i~~D~Vv~a~G  262 (450)
T PRK06116        205 ----G--FDPDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADG---------SLTLTLEDGE-----TLTVDCLIWAIG  262 (450)
T ss_pred             ----c--cCHHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCc---------eEEEEEcCCc-----EEEeCEEEEeeC
Confidence                0  0146667777778888887  8999999999865432         3566665543     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       263 --~~p~~~  268 (450)
T PRK06116        263 --REPNTD  268 (450)
T ss_pred             --CCcCCC
Confidence              777765

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.64  E-value=2.1e-07  Score=97.10  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=33.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~   47 (454)
                      ..||+|||||.||++||..+++.  |.+|+|+||.+..
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            47999999999999999999998  9999999998753

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.64  E-value=2.8e-07  Score=90.98  Aligned_cols=35  Identities=34%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .+||+|||||+.|+++|.+|++.|++|+|+|+...
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            47999999999999999999999999999999764

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.64  E-value=1.3e-07  Score=94.83  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=34.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ..+||||||+|.||++||.++. .|.+|+|+||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            3479999999999999999984 79999999998876653

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.64  E-value=2.3e-07  Score=95.63  Aligned_cols=155  Identities=23%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC--------CCCCCC------Cccc-------ccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--------PNTDQT------EVHS-------SVYAS   69 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~--------~~~~~~------~~~~-------~~~~~   69 (454)
                      ...||+|||+|.||++||..+++.|.+|+|+||....||.-.+.        +...+.      .+..       .....
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~   94 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS   94 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            46899999999999999999999999999999988765422111        000000      0000       00000


Q ss_pred             ceecCCccccc--cCCCCCCCCC----------CCCC--CC----CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575           70 LRLTSPREIMG--YTDFPFVLKK----------GRDV--RR----FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM  131 (454)
Q Consensus        70 ~~~~~~~~~~~--~~~~~~~~~~----------~~~~--~~----~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~  131 (454)
                      +..+.+..+-.  -.+.+|....          +...  ..    -.++.++.+.|.+.+++.++.  +..++.|+++..
T Consensus        95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~  172 (541)
T PRK07804         95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLT  172 (541)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEE
Confidence            00001100000  0122222100          0000  00    124677888888888888876  888999999876


Q ss_pred             cCCCccccCCcCCcEEEEEee---cCCCeEEEEEeCEEEEccCCCCC
Q 044575          132 LDCGELIIGNDLIKWVVKSKE---KKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      .+++.        -.-+...+   +..+....+.++.||+|||.++.
T Consensus       173 ~~~g~--------v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        173 DGTGA--------VAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             cCCCe--------EEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            53210        11233321   11122346889999999997553

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=2.1e-07  Score=97.39  Aligned_cols=37  Identities=46%  Similarity=0.493  Sum_probs=34.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG   48 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G   48 (454)
                      ..||+|||||.||++||..+++.|.+|+|+||....|
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            4799999999999999999999999999999987554

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.63  E-value=1.5e-06  Score=88.54  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  220 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------  220 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++...+.+..++.++.  +.++++|.+|+..+.          ...+...+++ +...++.+|.|++|+|
T Consensus       221 ----~--~d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~----------~v~v~~~~~~-g~~~~i~~D~vl~a~G  281 (475)
T PRK06327        221 ----A--ADEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGGK----------GVSVAYTDAD-GEAQTLEVDKLIVSIG  281 (475)
T ss_pred             ----c--CCHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcCC----------EEEEEEEeCC-CceeEEEcCEEEEccC
Confidence                0  0145666677777777877  899999999986532          3445544432 3334789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       282 --~~p~~~  287 (475)
T PRK06327        282 --RVPNTD  287 (475)
T ss_pred             --CccCCC
Confidence              788765

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.63  E-value=3.7e-07  Score=90.15  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=78.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------  179 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------------------------------  179 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------------------------------
Confidence            3478999999999999999999999999999987643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                            + ...++..++.+..++.++.  +.++++|.+++..+.          .+.+.+.++.     ++.+|.||+|+
T Consensus       180 ------~-~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~D~vI~a~  235 (377)
T PRK04965        180 ------L-MPPEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTDS----------GIRATLDSGR-----SIEVDAVIAAA  235 (377)
T ss_pred             ------h-CCHHHHHHHHHHHHhCCCE--EEECCeEEEEEccCC----------EEEEEEcCCc-----EEECCEEEECc
Confidence                  0 0145566777777888887  888999999876432          5677776554     78999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       236 G--~~p~~  241 (377)
T PRK04965        236 G--LRPNT  241 (377)
T ss_pred             C--CCcch
Confidence            9  66654

>PRK12839 hypothetical protein; Provisional

Probab=98.63  E-value=3.5e-07  Score=94.67  Aligned_cols=47  Identities=30%  Similarity=0.497  Sum_probs=41.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP   55 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~   55 (454)
                      +....||+|||+|.+|++||..+++.|.+|+|||+.+.+||.+....
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~   51 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSG   51 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccC
Confidence            34568999999999999999999999999999999988888765543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.62  E-value=2.7e-07  Score=95.85  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=34.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ..||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g   44 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS   44 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            47999999999999999999999999999999866544

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.62  E-value=4.1e-07  Score=89.94  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.++..++.  +..+++|++++..++          .+.|++.++      ++.+|+||+|+|.++
T Consensus       143 ~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~~----------~~~v~~~~~------~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       143 YAEKALRALQELAEAHGAT--VRDGTKVVEIEPTEL----------LVTVKTTKG------SYQANKLVVTAGAWT  200 (380)
T ss_pred             cHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecCC----------eEEEEeCCC------EEEeCEEEEecCcch
Confidence            4456777777778878877  888999999986532          566665432      688999999999654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.62  E-value=3.3e-07  Score=95.37  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=34.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ..||+|||+|.||++||..+++.|.+|+||||....+|
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g   49 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS   49 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            57999999999999999999999999999999765444

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.62  E-value=7e-07  Score=90.58  Aligned_cols=106  Identities=22%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..+++.|.+|+++|+.+.+..                                          
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------------  211 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------------  211 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------------
Confidence            47899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+++.+..++.++.  ++++++|.+++..++          ...+.+....++...++.+|.||+|+|
T Consensus       212 ----~--~d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~----------~v~v~~~~~~~g~~~~i~~D~vi~a~G  273 (466)
T PRK06115        212 ----G--TDTETAKTLQKALTKQGMK--FKLGSKVTGATAGAD----------GVSLTLEPAAGGAAETLQADYVLVAIG  273 (466)
T ss_pred             ----C--CCHHHHHHHHHHHHhcCCE--EEECcEEEEEEEcCC----------eEEEEEEEcCCCceeEEEeCEEEEccC
Confidence                0  0145667777777777887  899999999976432          444544422112234689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       274 --~~pn~~  279 (466)
T PRK06115        274 --RRPYTQ  279 (466)
T ss_pred             --Cccccc
Confidence              777654

>TIGR02053 MerA mercuric reductase

Probab=98.61  E-value=7.4e-07  Score=90.53  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=78.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  204 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-----------------------------------------  204 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------------------------------------
Confidence            378999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++...+.+..++.++.  +.++++|.+++..++          ...+++...+  ...++.+|.||+|+|
T Consensus       205 -------~d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~----------~~~v~~~~~~--~~~~i~~D~ViiA~G  263 (463)
T TIGR02053       205 -------EEPEISAAVEEALAEEGIE--VVTSAQVKAVSVRGG----------GKIITVEKPG--GQGEVEADELLVATG  263 (463)
T ss_pred             -------cCHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcCC----------EEEEEEEeCC--CceEEEeCEEEEeEC
Confidence                   0145667777777778887  899999999986532          4455554321  123689999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+...
T Consensus       264 --~~p~~~~  270 (463)
T TIGR02053       264 --RRPNTDG  270 (463)
T ss_pred             --CCcCCCC
Confidence              7887653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.61  E-value=7.6e-07  Score=83.41  Aligned_cols=152  Identities=20%  Similarity=0.289  Sum_probs=113.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||.-||..+.-..+.|.+||++|-.+++|+...                                       
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------------  251 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------------  251 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence            47899999999999999999999999999999988876632                                       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                               .|+..-.++..++.++.  +.++++|..+++..++         ...|++.+..+++..++++|.|.+|+|
T Consensus       252 ---------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg---------~v~i~ve~ak~~k~~tle~DvlLVsiG  311 (506)
T KOG1335|consen  252 ---------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDG---------PVEIEVENAKTGKKETLECDVLLVSIG  311 (506)
T ss_pred             ---------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCC---------ceEEEEEecCCCceeEEEeeEEEEEcc
Confidence                     57777788888888888  8999999999988765         677888877767788999999999999


Q ss_pred             CCCCCCCCCCCCcCC------ccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC
Q 044575          172 HYSYPRLPSIKGMDK------WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK  229 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~------~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~  229 (454)
                        .+|..-.+ |++.      +.+++.-...+..    .--++-.||--.-|--+|...-+.|.
T Consensus       312 --RrP~t~GL-gle~iGi~~D~r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeegI  368 (506)
T KOG1335|consen  312 --RRPFTEGL-GLEKIGIELDKRGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEGI  368 (506)
T ss_pred             --CcccccCC-Chhhcccccccccceeccccccc----cCCceEEecccCCcchhhhhhhhhch
Confidence              77776532 2221      2233332222211    12367778877777777776666553

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.61  E-value=5.4e-07  Score=91.48  Aligned_cols=101  Identities=24%  Similarity=0.219  Sum_probs=78.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                    .     
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~-----  213 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------F-----  213 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------c-----
Confidence            47899999999999999999999999999999764310                                    0     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++...+.+..++.++.  +.++++|++++..++          .+.+++.++.     ++.+|.||+|+|
T Consensus       214 -------~d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~D~vi~a~G  269 (461)
T PRK05249        214 -------LDDEISDALSYHLRDSGVT--IRHNEEVEKVEGGDD----------GVIVHLKSGK-----KIKADCLLYANG  269 (461)
T ss_pred             -------CCHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeCC----------eEEEEECCCC-----EEEeCEEEEeec
Confidence                   1156677777777777887  888999999986432          5556654443     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       270 --~~p~~~  275 (461)
T PRK05249        270 --RTGNTD  275 (461)
T ss_pred             --CCcccc
Confidence              777764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.61  E-value=4e-07  Score=90.49  Aligned_cols=100  Identities=25%  Similarity=0.270  Sum_probs=77.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.+..                                        
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------  183 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----------------------------------------  183 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------------------------------------
Confidence            4789999999999999999999999999999876431110                                        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+++.+..++.++.  ++++++|.+++. + .         ...+.+.++.     ++.+|.||+|+|
T Consensus       184 -------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~---------~~~v~l~~g~-----~i~aD~Vv~a~G  238 (396)
T PRK09754        184 -------APPPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-E---------KVELTLQSGE-----TLQADVVIYGIG  238 (396)
T ss_pred             -------cCHHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-C---------EEEEEECCCC-----EEECCEEEECCC
Confidence                   0145667777777788887  889999999875 2 1         4556666554     689999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        ..|+.
T Consensus       239 --~~pn~  243 (396)
T PRK09754        239 --ISAND  243 (396)
T ss_pred             --CChhh
Confidence              67764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.60  E-value=5e-07  Score=93.68  Aligned_cols=36  Identities=36%  Similarity=0.534  Sum_probs=33.2

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            345899999999999999999999999999999975

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.60  E-value=1.8e-06  Score=87.71  Aligned_cols=105  Identities=26%  Similarity=0.289  Sum_probs=78.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.                                           
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------  208 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------------------  208 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence            3689999999999999999999999999999876431                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.  ...++...+.+..++.++.  +.++++|.+++..+.          ...+.+... ++...++.+|.||+|+|
T Consensus       209 ---~~--~d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~~-~g~~~~i~~D~vi~a~G  270 (466)
T PRK07818        209 ---PN--EDAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNGS----------KVTVTVSKK-DGKAQELEADKVLQAIG  270 (466)
T ss_pred             ---Cc--cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCC----------eEEEEEEec-CCCeEEEEeCEEEECcC
Confidence               00  0145667777777888888  999999999976432          344554421 12234689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       271 --~~pn~~  276 (466)
T PRK07818        271 --FAPRVE  276 (466)
T ss_pred             --cccCCC
Confidence              777765

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=4.7e-07  Score=93.84  Aligned_cols=152  Identities=18%  Similarity=0.124  Sum_probs=83.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc--------cccCCC--CCCCCcc---------------ccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPN--TDQTEVH---------------SSV   66 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~--------w~~~~~--~~~~~~~---------------~~~   66 (454)
                      ..||||||+|.||++||..+++.|.+|+|+||.+..+|.        +.....  .+.+...               ...
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   84 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA   84 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence            479999999999999999999999999999998655442        211000  0110000               000


Q ss_pred             cccceecCCccc--cccCCCCCCCCC----------CCCCC--CC---CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEE
Q 044575           67 YASLRLTSPREI--MGYTDFPFVLKK----------GRDVR--RF---PGHKELWLYLKDFCQRFGLREMIRFNTRVEYV  129 (454)
Q Consensus        67 ~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~--~~---~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v  129 (454)
                      ...+..+.+..+  +.--+.+|....          +...+  .+   ..+..+...+.+.+...++.  +.+++.++++
T Consensus        85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L  162 (566)
T PRK06452         85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL  162 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence            000011111100  000123332100          00000  01   13566777777777766776  8889999998


Q ss_pred             EEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ...+..         -.-|...+..++....+.++.||||||.++
T Consensus       163 i~~~g~---------v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        163 VTDNKK---------VVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             EEECCE---------EEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            764321         112334333334455789999999999665

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.60  E-value=2.7e-07  Score=95.24  Aligned_cols=44  Identities=27%  Similarity=0.465  Sum_probs=40.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP   55 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~   55 (454)
                      ..+||||||+| +|++||..+++.|.+|+|+||.+.+||...+..
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g   58 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG   58 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence            46899999999 899999999999999999999999999887765

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.60  E-value=3e-07  Score=95.64  Aligned_cols=36  Identities=33%  Similarity=0.463  Sum_probs=32.9

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ||+|||+|.||++||..+++.|.+|+|+||....||
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g   36 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS   36 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            799999999999999999999999999999875543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.59  E-value=6.6e-07  Score=90.44  Aligned_cols=42  Identities=31%  Similarity=0.479  Sum_probs=38.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~   52 (454)
                      +.++|+|||||.|||+||.+|.+.    |.+|+|+|+.+.+||...
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            357999999999999999999985    679999999999999764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.59  E-value=6.8e-07  Score=90.24  Aligned_cols=101  Identities=22%  Similarity=0.212  Sum_probs=77.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..+++.|.+|+++++.+.+..                                          
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------  203 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------------  203 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------------
Confidence            46899999999999999999999999999998763200                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  +.++++|.+++..++          ...+.+.++.     ++.+|.||+|+|
T Consensus       204 ----~--~d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~D~viva~G  260 (446)
T TIGR01424       204 ----G--FDDDMRALLARNMEGRGIR--IHPQTSLTSITKTDD----------GLKVTLSHGE-----EIVADVVLFATG  260 (446)
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCC----------eEEEEEcCCc-----EeecCEEEEeeC
Confidence                0  0156667777777888887  889999999976432          4456554443     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       261 --~~pn~~  266 (446)
T TIGR01424       261 --RSPNTK  266 (446)
T ss_pred             --CCcCCC
Confidence              777654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.58  E-value=2.9e-07  Score=89.01  Aligned_cols=127  Identities=19%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEE-eeCCCCCcccccCCCCCCC-------------Cccccc-----cccc---e
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVL-EQNHDVGGQWLYDPNTDQT-------------EVHSSV-----YASL---R   71 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vi-e~~~~~GG~w~~~~~~~~~-------------~~~~~~-----~~~~---~   71 (454)
                      ||+|||||.||..||..+++.|.+|+|+ .+.+.+|..    .|.|+.             .+.+.+     ...+   .
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~----~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~   76 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM----SCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM   76 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc----cchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence            7999999999999999999999999999 455555432    222220             000000     0000   0


Q ss_pred             ecCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           72 LTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      .|..+.   +...        ....-..+..+.+++++.++.. ++.   ..+.+|++|...++.         -+-|.+
T Consensus        77 lN~skG---pav~--------a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~~~---------v~GV~~  133 (392)
T PF01134_consen   77 LNRSKG---PAVH--------ALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVENGK---------VKGVVT  133 (392)
T ss_dssp             ESTTS----GGCT--------EEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECTTE---------EEEEEE
T ss_pred             ccccCC---CCcc--------chHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecCCe---------EEEEEe
Confidence            111100   0000        0111245678888888888763 343   357899999876543         455666


Q ss_pred             eecCCCeEEEEEeCEEEEccCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      .++.     .+.+|.||+|||.
T Consensus       134 ~~g~-----~~~a~~vVlaTGt  150 (392)
T PF01134_consen  134 KDGE-----EIEADAVVLATGT  150 (392)
T ss_dssp             TTSE-----EEEECEEEE-TTT
T ss_pred             CCCC-----EEecCEEEEeccc
Confidence            6554     7899999999993

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.58  E-value=4.3e-07  Score=95.17  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=33.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG   48 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G   48 (454)
                      ..||+|||||.||++||..+++.|.+|+|+||...+|
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4799999999999999999999999999999876654

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.57  E-value=6e-07  Score=91.02  Aligned_cols=65  Identities=22%  Similarity=0.223  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  ++++++|++++..+++         .|.+++.+..++...++.+|+||+|+|.++
T Consensus       176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~---------~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDG---------SWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCC---------eEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            4456667777777777877  9999999999875433         688876543223334689999999999765

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.57  E-value=4.7e-07  Score=94.57  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC--------CCCCCCCcccc---------------ccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--------PNTDQTEVHSS---------------VYA   68 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~--------~~~~~~~~~~~---------------~~~   68 (454)
                      ..||+|||+|.||++||..+++.|.+|+|+||....||.....        ...+.+.....               ...
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~  108 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ  108 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            5799999999999999999999999999999987655432111        00011100000               000


Q ss_pred             cceecCCcccccc--CCCCCCCCC---------CCCC-----------CC---CCCHHHHHHHHHHHHHHhCCCccEEeC
Q 044575           69 SLRLTSPREIMGY--TDFPFVLKK---------GRDV-----------RR---FPGHKELWLYLKDFCQRFGLREMIRFN  123 (454)
Q Consensus        69 ~~~~~~~~~~~~~--~~~~~~~~~---------~~~~-----------~~---~~~~~~~~~yl~~~~~~~~~~~~i~~~  123 (454)
                      .+..+.+..+-.+  -+.+|....         +...           ..   -.++..+...|.+.+.+.++.  +..+
T Consensus       109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~  186 (617)
T PTZ00139        109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFIE  186 (617)
T ss_pred             HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEec
Confidence            0000011100000  122221100         0000           00   014568888888888888877  8899


Q ss_pred             eEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575          124 TRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       124 ~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      +.++++...+++.        -.-|...+..++....+.++.||+|||.+...
T Consensus       187 ~~~~~Li~~~~g~--------v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        187 YFALDLIMDEDGE--------CRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             eEEEEEEECCCCE--------EEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence            9999977532220        11133323223455678999999999976543

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.57  E-value=6.1e-07  Score=93.80  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=86.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc--------cccCCCCCCCCc---------------cccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTDQTEV---------------HSSVYA   68 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~--------w~~~~~~~~~~~---------------~~~~~~   68 (454)
                      ..||+|||+|.||++||..+++.|.+|+|+||....||.        +......+.+..               ......
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~  129 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ  129 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence            579999999999999999999999999999998765543        211110011000               000000


Q ss_pred             cceecCCcccccc--CCCCCCCCC---------CCC-----------CCCC---CCHHHHHHHHHHHHHHhCCCccEEeC
Q 044575           69 SLRLTSPREIMGY--TDFPFVLKK---------GRD-----------VRRF---PGHKELWLYLKDFCQRFGLREMIRFN  123 (454)
Q Consensus        69 ~~~~~~~~~~~~~--~~~~~~~~~---------~~~-----------~~~~---~~~~~~~~yl~~~~~~~~~~~~i~~~  123 (454)
                      .+..+.+..+-.+  -+.+|....         +..           ...+   .++..+...|.+.+.+.++.  +..+
T Consensus       130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~  207 (635)
T PLN00128        130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVE  207 (635)
T ss_pred             HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEe
Confidence            1111111111111  123332100         000           0000   14567778888877777776  8889


Q ss_pred             eEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575          124 TRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       124 ~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      +.++++...+++.        -.-|...+..++....+.++.||+|||.+...
T Consensus       208 ~~~~~Li~~~~g~--------v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        208 YFALDLIMDSDGA--------CQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             eEEEEEEEcCCCE--------EEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            9998876542221        11233333223445678999999999976543

>PRK06370 mercuric reductase; Validated

Probab=98.57  E-value=1.1e-06  Score=89.27  Aligned_cols=104  Identities=21%  Similarity=0.264  Sum_probs=78.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------------------------------------  209 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------------------------------------  209 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence            478999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+++.+..++.++.  +.++++|.+++..++          ...+.+...+  ...++.+|.||+|+|
T Consensus       210 -------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~----------~~~v~~~~~~--~~~~i~~D~Vi~A~G  268 (463)
T PRK06370        210 -------EDEDVAAAVREILEREGID--VRLNAECIRVERDGD----------GIAVGLDCNG--GAPEITGSHILVAVG  268 (463)
T ss_pred             -------cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------EEEEEEEeCC--CceEEEeCEEEECcC
Confidence                   0145667777778888887  899999999986532          3344443211  123689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       269 --~~pn~~  274 (463)
T PRK06370        269 --RVPNTD  274 (463)
T ss_pred             --CCcCCC
Confidence              777764

>PLN02985 squalene monooxygenase

Probab=98.56  E-value=1.6e-06  Score=88.65  Aligned_cols=36  Identities=36%  Similarity=0.584  Sum_probs=33.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+...
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            468999999999999999999999999999999753

>TIGR00551 nadB L-aspartate oxidase

Probab=98.56  E-value=5.1e-07  Score=92.10  Aligned_cols=149  Identities=22%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC------CCCCC--------Ccccc-------ccccce
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP------NTDQT--------EVHSS-------VYASLR   71 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~------~~~~~--------~~~~~-------~~~~~~   71 (454)
                      .||+|||+|.||++||..+++.|. |+|+||.+..||.-.+..      ..+.+        .+...       ....+.
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   81 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV   81 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence            699999999999999999999997 999999876554322110      00000        00000       000000


Q ss_pred             ecCCcccccc--CCCCCCCC----------CCCCCCC-----CCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcC
Q 044575           72 LTSPREIMGY--TDFPFVLK----------KGRDVRR-----FPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLD  133 (454)
Q Consensus        72 ~~~~~~~~~~--~~~~~~~~----------~~~~~~~-----~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~  133 (454)
                      .+.+..+-.+  -+.+|...          .+...+.     -.++..+...|.+.+++ .++.  +.+++.|+++...+
T Consensus        82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~~  159 (488)
T TIGR00551        82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIET  159 (488)
T ss_pred             HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeeccC
Confidence            0000000000  12222210          0000000     11456788888887776 4776  89999999987543


Q ss_pred             CCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      +.         -.-|...+.  +....+.++.||+|||.++.
T Consensus       160 g~---------v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       160 GR---------VVGVWVWNR--ETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             CE---------EEEEEEEEC--CcEEEEEcCEEEECCCcccC
Confidence            21         122334332  22346899999999997654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08275 putative oxidoreductase; Provisional

Probab=98.56  E-value=4.6e-07  Score=93.81  Aligned_cols=153  Identities=16%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC-cccccC--C----CCC-CCC---------------ccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG-GQWLYD--P----NTD-QTE---------------VHSSV   66 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G-G~w~~~--~----~~~-~~~---------------~~~~~   66 (454)
                      .+||+|||||.||++||..+++.  |.+|+|+||.+..+ |.....  .    ..+ ...               .....
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~   88 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA   88 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence            47999999999999999999987  68999999987532 221110  0    000 000               00000


Q ss_pred             cccceecCCcccccc--CCCCCCCC-CC-------CCCC----CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc
Q 044575           67 YASLRLTSPREIMGY--TDFPFVLK-KG-------RDVR----RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML  132 (454)
Q Consensus        67 ~~~~~~~~~~~~~~~--~~~~~~~~-~~-------~~~~----~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~  132 (454)
                      ...+..+.+..+-.+  .+.++... .+       ....    ....+..+.+.|.+.+++.++.  +.+++.|+++...
T Consensus        89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~  166 (554)
T PRK08275         89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVL--ITNRIMATRLLTD  166 (554)
T ss_pred             HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEc
Confidence            000000000000000  11222110 00       0000    1124667888888888888877  8999999998764


Q ss_pred             CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          133 DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +++.        -.-|...+..++....+.++.||+|||.++
T Consensus       167 ~~g~--------v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        167 ADGR--------VAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             CCCe--------EEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            2220        111222222223345688999999999654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.56  E-value=4.3e-07  Score=94.36  Aligned_cols=45  Identities=29%  Similarity=0.468  Sum_probs=39.8

Q ss_pred             hhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575            7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus         7 ~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      ..+....||||||+|.||++||..+++.|.+|+|+||.+..||..
T Consensus         6 ~~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835          6 QNFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CCccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            345567899999999999999999999999999999998888753

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.55  E-value=3.9e-07  Score=92.32  Aligned_cols=34  Identities=32%  Similarity=0.632  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~   45 (454)
                      ..||+|||||..|+++|.+|++.  |.+|+|+|++.
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            57999999999999999999998  89999999864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.55  E-value=6.1e-07  Score=95.09  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=32.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      +||+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~  295 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP  295 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            69999999999999999999999999999997544

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.55  E-value=9.1e-07  Score=89.31  Aligned_cols=103  Identities=18%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+..                                          
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------  203 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------------  203 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------------
Confidence            47899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .+  ..++.+.+.+..+..++.  +++++.|.+|+....+         ...+.+.++    ...+.+|.||+|+|
T Consensus       204 ----~~--d~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~---------~~~v~~~~g----~~~i~~D~vi~a~G  262 (450)
T TIGR01421       204 ----SF--DSMISETITEEYEKEGIN--VHKLSKPVKVEKTVEG---------KLVIHFEDG----KSIDDVDELIWAIG  262 (450)
T ss_pred             ----cc--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCc---------eEEEEECCC----cEEEEcCEEEEeeC
Confidence                00  145667777777777887  8999999999864321         244555433    12689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       263 --~~pn~~  268 (450)
T TIGR01421       263 --RKPNTK  268 (450)
T ss_pred             --CCcCcc
Confidence              777765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.55  E-value=5.7e-07  Score=90.97  Aligned_cols=62  Identities=21%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHH----hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQR----FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~----~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++    .+..-.++++++|++|+..++.         .|.|++.++      ++.+|+||+|+|.++
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~---------~~~V~T~~G------~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDS---------LYKIHTNRG------EIRARFVVVSACGYS  273 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCC---------eEEEEECCC------EEEeCEEEECcChhH
Confidence            445666666666766    5633238899999999876443         688877643      689999999999766


Q ss_pred             C
Q 044575          175 Y  175 (454)
Q Consensus       175 ~  175 (454)
                      .
T Consensus       274 ~  274 (497)
T PTZ00383        274 L  274 (497)
T ss_pred             H
Confidence            3

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.55  E-value=8.5e-07  Score=90.36  Aligned_cols=145  Identities=18%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceec-------CCccccccCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT-------SPREIMGYTDFP   85 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~   85 (454)
                      +||+|||||+||+.+|..+++.|.+|+|+|+....+|.+...+..... ....+...+..-       .......|....
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~-a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln   79 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGP-AKGILVKEIDALGGLMGKAADKAGLQFRVLN   79 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCcccccccc-ccchhhhhhhcccchHHHHHHhhceeheecc
Confidence            589999999999999999999999999999975444332211111000 000000000000       000000011110


Q ss_pred             CCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEe
Q 044575           86 FVLKKGR-DVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVF  163 (454)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (454)
                      ....+.. ....-..+..+...+++.+++. ++.   .+...|+.+...+++.        ...|.+.++.     .+.+
T Consensus        80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~--------V~GV~t~~G~-----~I~A  143 (617)
T TIGR00136        80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDE--------IKGVVTQDGL-----KFRA  143 (617)
T ss_pred             cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCc--------EEEEEECCCC-----EEEC
Confidence            0000000 0011234556677777777766 343   3456777775542211        3456665543     7899


Q ss_pred             CEEEEccCCCC
Q 044575          164 DAVVVATGHYS  174 (454)
Q Consensus       164 d~vViAtG~~~  174 (454)
                      |.||+|||.+.
T Consensus       144 d~VILATGtfL  154 (617)
T TIGR00136       144 KAVIITTGTFL  154 (617)
T ss_pred             CEEEEccCccc
Confidence            99999999653

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.55  E-value=6.1e-07  Score=92.63  Aligned_cols=35  Identities=29%  Similarity=0.512  Sum_probs=32.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .+||+|||||..|+++|+.|++.|++|+|||+.+-
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~   40 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI   40 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            48999999999999999999999999999999653

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=3.9e-07  Score=94.70  Aligned_cols=38  Identities=26%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG   49 (454)
                      ..||+|||||.||++||..+++.  |.+|+|+||....||
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg   42 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS   42 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence            36999999999999999999987  489999999876554

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.54  E-value=9e-08  Score=102.55  Aligned_cols=110  Identities=23%  Similarity=0.298  Sum_probs=61.6

Q ss_pred             cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCC---CcccccCCCCCCCC--ccccccccceecC-Cccc--cccCC
Q 044575           14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDV---GGQWLYDPNTDQTE--VHSSVYASLRLTS-PREI--MGYTD   83 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~---GG~w~~~~~~~~~~--~~~~~~~~~~~~~-~~~~--~~~~~   83 (454)
                      +|+||||||||+++|..|++.  |++|+|+|+++..   |......+..-..+  ........+..+. ....  +.+.+
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG   81 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence            799999999999999999998  8999999998753   33222221110000  0000000000000 0000  00000


Q ss_pred             CCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEE
Q 044575           84 FPFVLKKGRDVRRF--PGHKELWLYLKDFCQRFGLREMIRFNTRVEYV  129 (454)
Q Consensus        84 ~~~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v  129 (454)
                      .....    ....|  ..+.++.+.|.+.+.+.++.  ++++++|.++
T Consensus        82 ~~~~~----~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i  123 (765)
T PRK08255         82 RRIRS----GGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDD  123 (765)
T ss_pred             EEEEE----CCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCch
Confidence            00000    11112  56789999999999988877  8889887654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=7.3e-07  Score=92.81  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ..||+|||||.||++||.++++. .+|+|+||....+|
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            47999999999999999999876 89999999765444

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.53  E-value=9.8e-07  Score=88.68  Aligned_cols=100  Identities=21%  Similarity=0.293  Sum_probs=75.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||++|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~-------------------------------------------  173 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL-------------------------------------------  173 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC-------------------------------------------
Confidence            4789999999999999999999999999999876320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                        .+.  ...++..++.+..++.++.  +.++++|.+|+..+           .. +...++.     ++.||.||+|+|
T Consensus       174 --~~~--~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~-----------~~-v~~~~g~-----~i~~D~vi~a~G  230 (427)
T TIGR03385       174 --NKL--FDEEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE-----------RV-KVFTSGG-----VYQADMVILATG  230 (427)
T ss_pred             --ccc--cCHHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC-----------CE-EEEcCCC-----EEEeCEEEECCC
Confidence              000  0146667778888888888  88899999987532           32 3444443     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+.+
T Consensus       231 --~~p~~~  236 (427)
T TIGR03385       231 --IKPNSE  236 (427)
T ss_pred             --ccCCHH
Confidence              677654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.53  E-value=9.4e-07  Score=91.97  Aligned_cols=45  Identities=33%  Similarity=0.488  Sum_probs=40.1

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      ...+||+|||+|.+|+++|..++++|.+|+||||++.+||.....
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~   54 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS   54 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccccc
Confidence            346899999999999999999999999999999998888875544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.52  E-value=4.5e-07  Score=93.72  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC-CCcccccCC------CCCCCCc---------------ccccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-VGGQWLYDP------NTDQTEV---------------HSSVYAS   69 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~-~GG~w~~~~------~~~~~~~---------------~~~~~~~   69 (454)
                      ..||+|||+|.||++||..+ +.|.+|+|+||... .||.-....      ..+.+..               .......
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~   85 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI   85 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence            47999999999999999999 89999999999764 444321110      0000000               0000000


Q ss_pred             ceecCCcccccc--CCCCCCCCC-C------CCCCCC--------CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc
Q 044575           70 LRLTSPREIMGY--TDFPFVLKK-G------RDVRRF--------PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML  132 (454)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~~-~------~~~~~~--------~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~  132 (454)
                      +..+.+..+-.+  -+.+|.... +      .....+        .++.++...|.+.+.+.++.  +.+++.|+++...
T Consensus        86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~  163 (543)
T PRK06263         86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVD  163 (543)
T ss_pred             HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEe
Confidence            001111100000  122222100 0      000011        13567888888878777777  8999999998765


Q ss_pred             CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          133 DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ++..        -.-+...+..++....+.++.||+|||.+.
T Consensus       164 ~~~~--------v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        164 ENRE--------VIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             CCcE--------EEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            3210        111222221223345788999999999655

>PLN02507 glutathione reductase

Probab=98.52  E-value=1.4e-06  Score=89.05  Aligned_cols=101  Identities=21%  Similarity=0.161  Sum_probs=78.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..+++.|.+|+++++.+.+.                                           
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------------------  239 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------------------  239 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------------------
Confidence            4689999999999999999999999999999876320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.  ...++.+.+.+..++.++.  ++++++|.+++..++          ...+...++.     ++.+|.|++|+|
T Consensus       240 ---~~--~d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~~----------~~~v~~~~g~-----~i~~D~vl~a~G  297 (499)
T PLN02507        240 ---RG--FDDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTEG----------GIKVITDHGE-----EFVADVVLFATG  297 (499)
T ss_pred             ---cc--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCC----------eEEEEECCCc-----EEEcCEEEEeec
Confidence               00  1156777788888888887  899999999976432          4445544332     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       298 --~~pn~~  303 (499)
T PLN02507        298 --RAPNTK  303 (499)
T ss_pred             --CCCCCC
Confidence              777765

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=1.1e-06  Score=91.40  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ..||||||+|.||++||.++++.|.+|+|+||....||
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            35999999999999999999999999999999876543

>PRK07846 mycothione reductase; Reviewed

Probab=98.51  E-value=1.3e-06  Score=88.20  Aligned_cols=101  Identities=16%  Similarity=0.168  Sum_probs=73.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------------  203 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------------------------------------------  203 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..+ .++.  ++++++|.+++..+.          ...+.+.++.     ++.+|.||+|+|
T Consensus       204 ----~--~d~~~~~~l~~l~~-~~v~--i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~i~~D~vl~a~G  259 (451)
T PRK07846        204 ----H--LDDDISERFTELAS-KRWD--VRLGRNVVGVSQDGS----------GVTLRLDDGS-----TVEADVLLVATG  259 (451)
T ss_pred             ----c--cCHHHHHHHHHHHh-cCeE--EEeCCEEEEEEEcCC----------EEEEEECCCc-----EeecCEEEEEEC
Confidence                0  01445555555443 3555  888999999976432          3445554433     689999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+...
T Consensus       260 --~~pn~~~  266 (451)
T PRK07846        260 --RVPNGDL  266 (451)
T ss_pred             --CccCccc
Confidence              7887654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.51  E-value=1.6e-06  Score=88.05  Aligned_cols=104  Identities=25%  Similarity=0.277  Sum_probs=75.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|.+.|.+|++||+.+.+..                                          
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------------------------------------------  211 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------------------------------------------  211 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------------------------------------------
Confidence            36899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+++.+..++. +.  +.++++|.+++..++          ...++..+++ +...++.+|.||+|+|
T Consensus       212 ----~--~d~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~~----------~~~v~~~~~~-~~~~~i~~D~vi~a~G  271 (471)
T PRK06467        212 ----A--ADKDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKED----------GIYVTMEGKK-APAEPQRYDAVLVAVG  271 (471)
T ss_pred             ----c--CCHHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcCC----------EEEEEEEeCC-CcceEEEeCEEEEeec
Confidence                0  0145666666665554 55  888999999876532          4455554432 2234689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        .+|+..
T Consensus       272 --~~pn~~  277 (471)
T PRK06467        272 --RVPNGK  277 (471)
T ss_pred             --ccccCC
Confidence              788765

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.50  E-value=1.5e-06  Score=88.14  Aligned_cols=100  Identities=20%  Similarity=0.224  Sum_probs=77.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      ++++|||+|+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------------  214 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------------------  214 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------------------
Confidence            6899999999999999999999999999998764310                                           


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                         .  ...++..++.+..++.++.  +.++++|.+++..++          ...+.+.++.     ++.+|.||+|+| 
T Consensus       215 ---~--~d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~----------~~~v~~~~g~-----~l~~D~vl~a~G-  271 (466)
T PRK07845        215 ---G--EDADAAEVLEEVFARRGMT--VLKRSRAESVERTGD----------GVVVTLTDGR-----TVEGSHALMAVG-  271 (466)
T ss_pred             ---C--CCHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeCC----------EEEEEECCCc-----EEEecEEEEeec-
Confidence               0  0145667788888888887  888999999975432          4455554433     689999999999 


Q ss_pred             CCCCCCC
Q 044575          173 YSYPRLP  179 (454)
Q Consensus       173 ~~~p~~p  179 (454)
                       ..|+..
T Consensus       272 -~~pn~~  277 (466)
T PRK07845        272 -SVPNTA  277 (466)
T ss_pred             -CCcCCC
Confidence             777765

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.50  E-value=9.1e-07  Score=89.08  Aligned_cols=97  Identities=18%  Similarity=0.243  Sum_probs=75.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-----------------------------------------  186 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-----------------------------------------  186 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-----------------------------------------
Confidence            368999999999999999999999999999987643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+..++.++.  ++++++|.+++..              .|++.++.     ++.+|.|++|+|
T Consensus       187 -------~d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~--------------~v~~~~g~-----~~~~D~vl~a~G  238 (438)
T PRK13512        187 -------MDADMNQPILDELDKREIP--YRLNEEIDAINGN--------------EVTFKSGK-----VEHYDMIIEGVG  238 (438)
T ss_pred             -------cCHHHHHHHHHHHHhcCCE--EEECCeEEEEeCC--------------EEEECCCC-----EEEeCEEEECcC
Confidence                   0146667777777888887  8899999998621              25554443     678999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       239 --~~pn~~  244 (438)
T PRK13512        239 --THPNSK  244 (438)
T ss_pred             --CCcChH
Confidence              777754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.49  E-value=2e-06  Score=86.04  Aligned_cols=40  Identities=30%  Similarity=0.461  Sum_probs=36.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      +.+||+|||||..|+.+|+.++..|++|+|+|+.+--.|+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT   50 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT   50 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence            6799999999999999999999999999999998875554

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.48  E-value=2.7e-06  Score=86.37  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          100 HKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       100 ~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ...+.+.+.+.+++.+ +.  +.++++|++++..+++         .|.|++.+..++...++.+|+||+|+|.++.
T Consensus       182 ~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg---------~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        182 FGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDG---------SWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCC---------CEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            3466666777777665 56  8999999999876543         5888776422222235899999999997653

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=5.6e-07  Score=93.67  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC---CcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG---HRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g---~~v~vie~~~~~GG~   50 (454)
                      ..||+|||||.||++||..+++.|   .+|+|+||....||.
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~   46 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH   46 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence            479999999999999999999998   899999998766553

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=1.6e-07  Score=94.66  Aligned_cols=42  Identities=50%  Similarity=0.726  Sum_probs=39.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +.++|+|||||.|||+||++|.+.|++|+|+|.++++||...
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence            467999999999999999999999999999999999999855

>TIGR03452 mycothione_red mycothione reductase

Probab=98.45  E-value=2.2e-06  Score=86.57  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=73.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|++|++.+.+...                                         
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----------------------------------------  207 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----------------------------------------  207 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence            478999999999999999999999999999987643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++...+.++.+ .++.  ++++++|.+++..+.          ...+++.++.     ++.+|.|++|+|
T Consensus       208 -------~d~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~~----------~v~v~~~~g~-----~i~~D~vl~a~G  262 (452)
T TIGR03452       208 -------LDEDISDRFTEIAK-KKWD--IRLGRNVTAVEQDGD----------GVTLTLDDGS-----TVTADVLLVATG  262 (452)
T ss_pred             -------cCHHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcCC----------eEEEEEcCCC-----EEEcCEEEEeec
Confidence                   01445555555443 3555  888999999986432          4455554433     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       263 --~~pn~~  268 (452)
T TIGR03452       263 --RVPNGD  268 (452)
T ss_pred             --cCcCCC
Confidence              777764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.45  E-value=2.6e-06  Score=85.97  Aligned_cols=100  Identities=21%  Similarity=0.293  Sum_probs=76.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      ..+|+|||+|+.|+..|..|++.|.+|+++++.+.+.                                           
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------  194 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------------------  194 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------------------
Confidence            4689999999999999999999999999999875331                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.+  ..++...+.+.+++.++.  ++++++|.+|+..+.          ...+...++      ++.+|.|++|+|
T Consensus       195 ---~~~--~~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~----------~v~v~~~~g------~i~~D~vl~a~G  251 (441)
T PRK08010        195 ---PRE--DRDIADNIATILRDQGVD--IILNAHVERISHHEN----------QVQVHSEHA------QLAVDALLIASG  251 (441)
T ss_pred             ---CCc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------EEEEEEcCC------eEEeCEEEEeec
Confidence               000  156667777788888888  889999999986532          444443221      578999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       252 --~~pn~~  257 (441)
T PRK08010        252 --RQPATA  257 (441)
T ss_pred             --CCcCCC
Confidence              777764

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.45  E-value=1.5e-06  Score=82.26  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=69.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc------CCcEEEEeeCCCCCcccccCCCCCCC----Ccccc--ccccceecCCccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDVGGQWLYDPNTDQT----EVHSS--VYASLRLTSPREI   78 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~------g~~v~vie~~~~~GG~w~~~~~~~~~----~~~~~--~~~~~~~~~~~~~   78 (454)
                      ...||||||||||||+||.+|++.      ..+|+|+||...+||.-....+....    +++.-  .-..+.+.+.++-
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~  154 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK  154 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence            468999999999999999999874      46899999999999875443332211    00000  0001111111111


Q ss_pred             ccc----CCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcC
Q 044575           79 MGY----TDFPFVLK--KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD  133 (454)
Q Consensus        79 ~~~----~~~~~~~~--~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~  133 (454)
                      +.|    ..+|.|..  -.+...-..+-.++.++|-+.++.++++  |.-+..+..|-..+
T Consensus       155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~e  213 (621)
T KOG2415|consen  155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDE  213 (621)
T ss_pred             eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcC
Confidence            221    11222210  0012222246678999999999999988  55555555554443

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.45  E-value=1.6e-06  Score=85.24  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=31.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4899999999999999999999999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.45  E-value=4.3e-06  Score=86.58  Aligned_cols=44  Identities=34%  Similarity=0.505  Sum_probs=38.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      ...||+|||+|++|++||..+++.|.+|+||||.+.+||.....
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~   49 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS   49 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccccc
Confidence            35899999999999999999999999999999998888754443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.44  E-value=2.6e-06  Score=86.47  Aligned_cols=102  Identities=22%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++|+|||||+.|+.+|..+...   |.+|+|+++.+.+..                                       
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~---------------------------------------  227 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR---------------------------------------  227 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc---------------------------------------
Confidence            47899999999999999766544   899999998764310                                       


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                             .  -..++.+.+.+..++.++.  +++++.|.+++..+++         ...+.+.++.     ++.+|.||+
T Consensus       228 -------~--~d~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~---------~~~v~~~~g~-----~i~~D~vl~  282 (486)
T TIGR01423       228 -------G--FDSTLRKELTKQLRANGIN--IMTNENPAKVTLNADG---------SKHVTFESGK-----TLDVDVVMM  282 (486)
T ss_pred             -------c--cCHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCc---------eEEEEEcCCC-----EEEcCEEEE
Confidence                   0  0156777788888888887  8999999999865332         3345554433     689999999


Q ss_pred             ccCCCCCCCCC
Q 044575          169 ATGHYSYPRLP  179 (454)
Q Consensus       169 AtG~~~~p~~p  179 (454)
                      |+|  ..|+..
T Consensus       283 a~G--~~Pn~~  291 (486)
T TIGR01423       283 AIG--RVPRTQ  291 (486)
T ss_pred             eeC--CCcCcc
Confidence            999  777764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.44  E-value=2.1e-06  Score=86.77  Aligned_cols=101  Identities=28%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  186 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------------------  186 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc------------------------------------------
Confidence            47899999999999999999999999999998653200                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         ..+  ..++.+++.+.+++.++.  ++++++|.+++..+ .         ...+... +.     ++.+|.||+|+|
T Consensus       187 ---~~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~---------~~~v~~~-~~-----~i~~d~vi~a~G  243 (444)
T PRK09564        187 ---DSF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-K---------VEGVVTD-KG-----EYEADVVIVATG  243 (444)
T ss_pred             ---hhc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-c---------EEEEEeC-CC-----EEEcCEEEECcC
Confidence               000  157778888888888887  88999999996432 1         2333332 22     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+.+
T Consensus       244 --~~p~~~  249 (444)
T PRK09564        244 --VKPNTE  249 (444)
T ss_pred             --CCcCHH
Confidence              677643

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.44  E-value=1.7e-06  Score=89.56  Aligned_cols=42  Identities=50%  Similarity=0.788  Sum_probs=37.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--CCCccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--DVGGQW   51 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--~~GG~w   51 (454)
                      ....||||||+|.|||+||..+++.|.+|+|+||.+  ..||.-
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            345899999999999999999999999999999998  677753

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.44  E-value=1.6e-06  Score=90.43  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             EEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575           15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG   48 (454)
Q Consensus        15 VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G   48 (454)
                      |+|||+|.||++||..+++.|.+|+|+||.+.++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            6999999999999999999999999999987443

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.43  E-value=2.1e-06  Score=83.52  Aligned_cols=131  Identities=24%  Similarity=0.367  Sum_probs=90.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHc-------------CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKE-------------GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIM   79 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~-------------g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+|+|+|||+.|+..|-+|.+.             ..+|+|+|+.+.+                                
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------------------------------  203 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------------------------------  203 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------------------------------
Confidence            4799999999999999998653             1389999998765                                


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                          .|.            ..+++..|.+++.++.|++  +.+++.|++|+..              .|++.+++   . 
T Consensus       204 ----Lp~------------~~~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~--------------~v~~~~g~---~-  247 (405)
T COG1252         204 ----LPM------------FPPKLSKYAERALEKLGVE--VLLGTPVTEVTPD--------------GVTLKDGE---E-  247 (405)
T ss_pred             ----ccC------------CCHHHHHHHHHHHHHCCCE--EEcCCceEEECCC--------------cEEEccCC---e-
Confidence                111            1168889999999999999  9999999999865              26666654   1 


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCc-cceeEEeecCCCCCCCCCCeEEEEcCC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKW-KRKQMHSHIYRVPEPFRNEVVVVVGNS  214 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~-~~~~~~~~~~~~~~~~~~k~vvVVG~G  214 (454)
                      ++.++.+|=|+|....|..-.+-|.+.- .|++.-......+.   -..|-++|--
T Consensus       248 ~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~---~~~IFa~GD~  300 (405)
T COG1252         248 EIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPG---HPDIFAAGDC  300 (405)
T ss_pred             eEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCC---CCCeEEEecc
Confidence            5999999999995444433343234322 34544443333332   2457777753

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.42  E-value=3.8e-06  Score=85.30  Aligned_cols=104  Identities=25%  Similarity=0.266  Sum_probs=75.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  207 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-----------------------------------------  207 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence            478999999999999999999999999999997643110                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+..++. +.  ++++++|.+++..+..         ..+++..++   ...++.+|.||+|+|
T Consensus       208 -------~d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~---------~v~~~~~~~---~~~~i~~D~vi~a~G  265 (460)
T PRK06292        208 -------EDPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDE---------KVEELEKGG---KTETIEADYVLVATG  265 (460)
T ss_pred             -------hhHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCc---------eEEEEEcCC---ceEEEEeCEEEEccC
Confidence                   0145666777766666 66  8899999999764321         223322222   234689999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+...
T Consensus       266 --~~p~~~~  272 (460)
T PRK06292        266 --RRPNTDG  272 (460)
T ss_pred             --CccCCCC
Confidence              7887763

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.41  E-value=1.4e-06  Score=89.23  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=33.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ..||+|||+|.||++||..+++ |.+|+|+||.+..||.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~   40 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN   40 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence            4699999999999999999976 8999999998876654

>PRK07208 hypothetical protein; Provisional

Probab=98.41  E-value=2.9e-07  Score=93.93  Aligned_cols=43  Identities=51%  Similarity=0.682  Sum_probs=39.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +..++|+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~   44 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISR   44 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            3457999999999999999999999999999999999999875

>PTZ00058 glutathione reductase; Provisional

Probab=98.40  E-value=4.2e-06  Score=86.13  Aligned_cols=103  Identities=16%  Similarity=0.229  Sum_probs=76.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+.                                           
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------------------  273 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------------------  273 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------------------
Confidence            5789999999999999999999999999999976431                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.+  .+++.+.+.+..++.++.  +.+++.|.+|+..+..         ...+...++    ..++.+|.|++|+|
T Consensus       274 ---~~~--d~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~---------~v~v~~~~~----~~~i~aD~VlvA~G  333 (561)
T PTZ00058        274 ---RKF--DETIINELENDMKKNNIN--IITHANVEEIEKVKEK---------NLTIYLSDG----RKYEHFDYVIYCVG  333 (561)
T ss_pred             ---ccC--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCC---------cEEEEECCC----CEEEECCEEEECcC
Confidence               000  156667777777778887  8999999999865322         233433322    12689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       334 --r~Pn~~  339 (561)
T PTZ00058        334 --RSPNTE  339 (561)
T ss_pred             --CCCCcc
Confidence              677754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.40  E-value=1.1e-05  Score=84.13  Aligned_cols=40  Identities=48%  Similarity=0.596  Sum_probs=37.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      ..||||||+|++|++||..+++.|.+|+|+||.+.+||.-
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence            5799999999999999999999999999999999888753

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.40  E-value=2.8e-06  Score=87.93  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=38.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      .+||||||+|.+|++||..+++.|.+|+|||+.+..||.....
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s   48 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS   48 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceecee
Confidence            5799999999999999999999999999999998888875444

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.40  E-value=2.5e-06  Score=89.30  Aligned_cols=39  Identities=28%  Similarity=0.436  Sum_probs=34.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ..+||+|||||..|.++|..|++.|++|+|||+.+..+|
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            458999999999999999999999999999999854333

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.39  E-value=9.4e-07  Score=81.13  Aligned_cols=42  Identities=31%  Similarity=0.525  Sum_probs=39.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      +|++|||||.+|+..|..|++.|.+|.|+||++++||.|.-.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde   43 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE   43 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence            799999999999999999999999999999999999998754

>PLN02815 L-aspartate oxidase

Probab=98.39  E-value=1.8e-06  Score=89.46  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=34.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      ..||||||+|.||++||..+++.| +|+|+||.+..||
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            479999999999999999999999 9999999887665

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.39  E-value=2.4e-06  Score=88.68  Aligned_cols=39  Identities=26%  Similarity=0.367  Sum_probs=34.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~   50 (454)
                      ..||+|||||.||++||..+++.  |.+|+|+||....||.
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~   43 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH   43 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence            47999999999999999999987  5799999998776654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.38  E-value=3.5e-07  Score=93.04  Aligned_cols=42  Identities=48%  Similarity=0.631  Sum_probs=39.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      .+||||||||++||+||..|+++|++|+|+||++.+||..+.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t   44 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRART   44 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEE
Confidence            489999999999999999999999999999999999997764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.38  E-value=2.1e-06  Score=89.32  Aligned_cols=39  Identities=21%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~   50 (454)
                      ..||+|||||.||++||..+++.  |.+|+|+||....||.
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~   44 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH   44 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence            47999999999999999999987  4799999998766654

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.38  E-value=5.6e-06  Score=82.93  Aligned_cols=34  Identities=32%  Similarity=0.567  Sum_probs=31.7

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      ||+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~   35 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP   35 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence            7999999999999999999999999999997544

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.37  E-value=3.6e-06  Score=84.00  Aligned_cols=101  Identities=32%  Similarity=0.463  Sum_probs=78.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+++||||+|+.|+.+|..|++.|++|+++|+.+.+++...                                       
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------  176 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------  176 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence            37999999999999999999999999999999887644321                                       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE--EEEeecCCCeEEEEEeCEEEEc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV--VKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~vViA  169 (454)
                            .  .++.+.+.+..+.+++.  ++++..+..|+...+.         ...  +...++.     .+.+|.++++
T Consensus       177 ------~--~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~-----~~~~d~~~~~  232 (415)
T COG0446         177 ------D--PEVAEELAELLEKYGVE--LLLGTKVVGVEGKGNT---------LVVERVVGIDGE-----EIKADLVIIG  232 (415)
T ss_pred             ------h--HHHHHHHHHHHHHCCcE--EEeCCceEEEEcccCc---------ceeeEEEEeCCc-----EEEeeEEEEe
Confidence                  0  46677888888888877  8899999999876532         111  3333333     7899999999


Q ss_pred             cCCCCCCC
Q 044575          170 TGHYSYPR  177 (454)
Q Consensus       170 tG~~~~p~  177 (454)
                      +|  ..|+
T Consensus       233 ~g--~~p~  238 (415)
T COG0446         233 PG--ERPN  238 (415)
T ss_pred             ec--cccc
Confidence            99  7775

>PRK14727 putative mercuric reductase; Provisional

Probab=98.37  E-value=5.5e-06  Score=84.43  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+..|..|++.|.+|+++++.. +   +                                        
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~---l----------------------------------------  223 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L---L----------------------------------------  223 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C---C----------------------------------------
Confidence            3689999999999999999999999999998742 1   0                                        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +  ....++.+.+.+..++.++.  +.++++|.+++..++          .+.+...++      ++.+|.||+|+|
T Consensus       224 ---~--~~d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~----------~~~v~~~~g------~i~aD~VlvA~G  280 (479)
T PRK14727        224 ---F--REDPLLGETLTACFEKEGIE--VLNNTQASLVEHDDN----------GFVLTTGHG------ELRAEKLLISTG  280 (479)
T ss_pred             ---C--cchHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeCC----------EEEEEEcCC------eEEeCEEEEccC
Confidence               0  01146677788888888887  888999999976432          455544321      578999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       281 --~~pn~~  286 (479)
T PRK14727        281 --RHANTH  286 (479)
T ss_pred             --CCCCcc
Confidence              777764

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.36  E-value=1.7e-06  Score=88.75  Aligned_cols=41  Identities=32%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575            1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus         1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ||.++.   ....||+|||+|.||++||.+++  +.+|+|+||.+.
T Consensus         1 ~~~~~~---~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          1 MMEDLR---ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CCcccc---CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            665543   34589999999999999999996  569999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.35  E-value=3.4e-06  Score=88.70  Aligned_cols=37  Identities=30%  Similarity=0.333  Sum_probs=33.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG   48 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G   48 (454)
                      ..||||||||.||++||.++++.|.+|+|+||.+..+
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            4799999999999999999999999999999977644

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.35  E-value=3.5e-06  Score=86.94  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ..||||||+|.||++||..+++. .+|+|+||....||.
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            47999999999999999999886 899999998876663

>PRK14694 putative mercuric reductase; Provisional

Probab=98.34  E-value=6.9e-06  Score=83.51  Aligned_cols=99  Identities=21%  Similarity=0.273  Sum_probs=74.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.. +-                                    +      
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l------------------------------------~------  214 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL------------------------------------S------  214 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC------------------------------------C------
Confidence            4689999999999999999999999999998632 10                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++...+.+..++.++.  ++++++|.+++..+.          ...+... ++     ++.+|.||+|+|
T Consensus       215 ----~--~~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~~----------~~~v~~~-~~-----~i~~D~vi~a~G  270 (468)
T PRK14694        215 ----Q--EDPAVGEAIEAAFRREGIE--VLKQTQASEVDYNGR----------EFILETN-AG-----TLRAEQLLVATG  270 (468)
T ss_pred             ----C--CCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------EEEEEEC-CC-----EEEeCEEEEccC
Confidence                0  1145667777777888887  888999999875432          3444432 22     589999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       271 --~~pn~~  276 (468)
T PRK14694        271 --RTPNTE  276 (468)
T ss_pred             --CCCCcC
Confidence              777765

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.34  E-value=4.8e-06  Score=86.68  Aligned_cols=44  Identities=34%  Similarity=0.446  Sum_probs=39.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      ..+||+|||+|++|++||..+++.|.+|+|+|+.+.+||.....
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s   58 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS   58 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence            35799999999999999999999999999999999888876554

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.32  E-value=8.6e-06  Score=85.14  Aligned_cols=109  Identities=21%  Similarity=0.294  Sum_probs=76.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..|.+.|.+|++||+.+.+...                                         
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-----------------------------------------  350 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-----------------------------------------  350 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------------------------------------
Confidence            468999999999999999999999999999997754100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHH-HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC---C-C------eEEE
Q 044575           92 RDVRRFPGHKELWLYLKDFC-QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK---A-D------KVVE  160 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~---~-~------~~~~  160 (454)
                             ...++.+++.+.. ++.++.  +++++.|.+|+..++..        ..++...+..   . +      ...+
T Consensus       351 -------~d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~--------~v~v~~~~~~~~~~~~~~~~~~~~~~  413 (659)
T PTZ00153        351 -------LDADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQ--------PVIIGHSERQTGESDGPKKNMNDIKE  413 (659)
T ss_pred             -------CCHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCce--------EEEEEEeccccccccccccccccceE
Confidence                   0145666666653 556777  89999999998653210        2334332211   0 0      1236


Q ss_pred             EEeCEEEEccCCCCCCCCCC
Q 044575          161 EVFDAVVVATGHYSYPRLPS  180 (454)
Q Consensus       161 ~~~d~vViAtG~~~~p~~p~  180 (454)
                      +.+|.|++|+|  .+|+...
T Consensus       414 i~aD~VlvAtG--r~Pnt~~  431 (659)
T PTZ00153        414 TYVDSCLVATG--RKPNTNN  431 (659)
T ss_pred             EEcCEEEEEEC--cccCCcc
Confidence            89999999999  7887653

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.31  E-value=2.1e-06  Score=88.56  Aligned_cols=39  Identities=28%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ...||+|||+|.||++||.++. .|.+|+|+||.+..||.
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            4589999999999999999996 59999999998876653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.31  E-value=1.7e-06  Score=87.02  Aligned_cols=59  Identities=15%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      ..+..+.++|.+.+.+.|+.  +..+ +|+.|...+++.        -..|++.++.     ++++|++|-|||.
T Consensus       151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~--------i~~v~~~~g~-----~i~ad~~IDASG~  209 (454)
T PF04820_consen  151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGR--------ITAVRLDDGR-----TIEADFFIDASGR  209 (454)
T ss_dssp             EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSE--------EEEEEETTSE-----EEEESEEEE-SGG
T ss_pred             EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCC--------EEEEEECCCC-----EEEEeEEEECCCc
Confidence            46789999999999999987  4444 688888766421        2345554443     7899999999993

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.30  E-value=8.5e-06  Score=83.29  Aligned_cols=100  Identities=22%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++. .+.                                           
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------------------  217 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-------------------------------------------  217 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-------------------------------------------
Confidence            358999999999999999999999999999863 210                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.  ...++.+.+.+..++.++.  +.+++.|.+++..++          ...+.+.++.     ++.+|.||+|+|
T Consensus       218 ---~~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~----------~~~v~~~~g~-----~i~~D~vl~a~G  275 (499)
T PTZ00052        218 ---RG--FDRQCSEKVVEYMKEQGTL--FLEGVVPINIEKMDD----------KIKVLFSDGT-----TELFDTVLYATG  275 (499)
T ss_pred             ---cc--CCHHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcCC----------eEEEEECCCC-----EEEcCEEEEeeC
Confidence               00  0145667777778888887  888999988876532          3345554443     578999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       276 --~~pn~~  281 (499)
T PTZ00052        276 --RKPDIK  281 (499)
T ss_pred             --CCCCcc
Confidence              777765

>PLN02546 glutathione reductase

Probab=98.30  E-value=8.2e-06  Score=84.04  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=75.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..|.+.|.+|+++++.+.+...                                         
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-----------------------------------------  290 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-----------------------------------------  290 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence            478999999999999999999999999999987643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++..++.+..++.++.  +.++++|.++....++         ...+...+     .....+|.||+|+|
T Consensus       291 -------~d~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g---------~v~v~~~~-----g~~~~~D~Viva~G  347 (558)
T PLN02546        291 -------FDEEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADG---------SLSLKTNK-----GTVEGFSHVMFATG  347 (558)
T ss_pred             -------cCHHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCC---------EEEEEECC-----eEEEecCEEEEeec
Confidence                   0156677777777888888  8889999999764332         33343321     11345899999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       348 --~~Pnt~  353 (558)
T PLN02546        348 --RKPNTK  353 (558)
T ss_pred             --cccCCC
Confidence              777764

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.30  E-value=6e-06  Score=92.42  Aligned_cols=41  Identities=34%  Similarity=0.514  Sum_probs=37.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      ...||||||+|.||++||.++++.|.+|+|+||.+..||.-
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            35899999999999999999999999999999999888753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.30  E-value=1e-05  Score=82.39  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=76.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      ..+++|||||+.|+.+|..|++.|.+|+++++. .+.                                    +      
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------------------------------------~------  216 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL------------------------------------R------  216 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc------------------------------------c------
Confidence            368999999999999999999999999999873 220                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+++.+..++.++.  +++++.+.+|+..++          ...|+..++.  ...++.+|.||+|+|
T Consensus       217 ----~--~d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~----------~~~v~~~~~~--~~~~i~~D~vl~a~G  276 (484)
T TIGR01438       217 ----G--FDQDCANKVGEHMEEHGVK--FKRQFVPIKVEQIEA----------KVKVTFTDST--NGIEEEYDTVLLAIG  276 (484)
T ss_pred             ----c--cCHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcCC----------eEEEEEecCC--cceEEEeCEEEEEec
Confidence                0  0156777888888888888  889999988876532          3345544432  123689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       277 --~~pn~~  282 (484)
T TIGR01438       277 --RDACTR  282 (484)
T ss_pred             --CCcCCC
Confidence              777764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.29  E-value=8.3e-06  Score=84.99  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=75.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++..-+    .                                       
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----~---------------------------------------  306 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----F---------------------------------------  306 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----c---------------------------------------
Confidence            468999999999999999999999999999974210    0                                       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++...+.+..++.++.  +.++++|.+++..+.          .+.+...+ +     ++.+|.||+|+|
T Consensus       307 ----~--~d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~----------~~~v~~~~-~-----~i~~D~vi~a~G  362 (561)
T PRK13748        307 ----R--EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVDG----------EFVLTTGH-G-----ELRADKLLVATG  362 (561)
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCC----------EEEEEecC-C-----eEEeCEEEEccC
Confidence                0  0146677778888888888  888999999875432          44444332 1     589999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       363 --~~pn~~  368 (561)
T PRK13748        363 --RAPNTR  368 (561)
T ss_pred             --CCcCCC
Confidence              788765

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.29  E-value=1.3e-05  Score=78.03  Aligned_cols=63  Identities=27%  Similarity=0.355  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575          103 LWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       103 ~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      +.+-+-+++.+. +..  ++++++|++|++..++         .|.|++.+..++...++++++|+|..|.++.|
T Consensus       183 LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg---------~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  183 LTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDG---------RWEVKVKDLKTGEKREVRAKFVFVGAGGGALP  246 (488)
T ss_pred             HHHHHHHHHHhCCCcE--EEecCEeCeeEECCCC---------CEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence            334444444443 655  9999999999998775         89999988666667789999999999966543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.28  E-value=1.1e-05  Score=80.44  Aligned_cols=35  Identities=40%  Similarity=0.586  Sum_probs=31.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~-~v~vie~~~   45 (454)
                      ..+||+|||||..|+++|.+|++. |. +|+|+|+..
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            468999999999999999999985 85 999999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.27  E-value=8.1e-06  Score=88.02  Aligned_cols=103  Identities=21%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+.+|..|++.|.+|+|+++.+.+-..                                         
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~-----------------------------------------  183 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE-----------------------------------------  183 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------------------------------
Confidence            468999999999999999999999999999987642000                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            .-..++...+.+..++.++.  +++++.|.+|.......        .-.+.+.++.     ++.+|.||+|+|
T Consensus       184 ------~ld~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~--------~~~v~~~dG~-----~i~~D~Vv~A~G  242 (847)
T PRK14989        184 ------QLDQMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEA--------RKTMRFADGS-----ELEVDFIVFSTG  242 (847)
T ss_pred             ------hcCHHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCc--------eEEEEECCCC-----EEEcCEEEECCC
Confidence                  00146667788888888988  99999999997542210        3345555554     789999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        .+|+.
T Consensus       243 --~rPn~  247 (847)
T PRK14989        243 --IRPQD  247 (847)
T ss_pred             --cccCc
Confidence              77775

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.27  E-value=6.1e-06  Score=85.69  Aligned_cols=33  Identities=30%  Similarity=0.487  Sum_probs=30.4

Q ss_pred             cEEEECcChHHHHHHHHHH----HcCCcEEEEeeCCC
Q 044575           14 NVCVIGAGPSGLVAARELR----KEGHRVVVLEQNHD   46 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~----~~g~~v~vie~~~~   46 (454)
                      ||||||||.||++||..++    +.|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999998    67999999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.26  E-value=1e-05  Score=74.35  Aligned_cols=151  Identities=23%  Similarity=0.238  Sum_probs=86.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC------CCCCC----Ccccc------------------
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP------NTDQT----EVHSS------------------   65 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~------~~~~~----~~~~~------------------   65 (454)
                      .|||||+|.|||+|+..+...+-.|+++|+...+||.-....      ++...    ...++                  
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e   90 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE   90 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence            599999999999999999999888999999999998643221      11100    00000                  


Q ss_pred             ccccceecCCccccc--------------cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----CCCccEEeCeEEE
Q 044575           66 VYASLRLTSPREIMG--------------YTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF----GLREMIRFNTRVE  127 (454)
Q Consensus        66 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~----~~~~~i~~~~~V~  127 (454)
                      ....+..+++...-.              ..+...|... +.....|+.-++...|....+++    .-.-.|.++++|+
T Consensus        91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTH-r~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv  169 (477)
T KOG2404|consen   91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTH-RSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV  169 (477)
T ss_pred             HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCccc-ccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence            011111111111111              1122222211 12233445555555554444433    2122378899999


Q ss_pred             EEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          128 YVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      +|.+..+.         -.-|...+.. ++...+.++.||+|||.|+.
T Consensus       170 ~il~n~gk---------VsgVeymd~s-gek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  170 DILRNNGK---------VSGVEYMDAS-GEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             eeecCCCe---------EEEEEEEcCC-CCccceecCceEEecCCcCc
Confidence            99855432         3445555443 44456789999999998765

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.26  E-value=7.5e-06  Score=84.04  Aligned_cols=39  Identities=31%  Similarity=0.515  Sum_probs=35.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      ..||||||+| +|++||.++++.|.+|+||||.+..||.-
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            5799999999 99999999999999999999998777644

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.26  E-value=9.5e-06  Score=80.38  Aligned_cols=37  Identities=38%  Similarity=0.472  Sum_probs=33.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      .++||+|||||.+|+++|.+|++.|.+|+++|+..-.
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~   39 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG   39 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence            3579999999999999999999999999999987643

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.26  E-value=1.1e-05  Score=74.76  Aligned_cols=158  Identities=20%  Similarity=0.321  Sum_probs=95.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC--c---------------------------ccccCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG--G---------------------------QWLYDPNTDQ   59 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G--G---------------------------~w~~~~~~~~   59 (454)
                      |....+|+|||||.-|+++|.+|++.|.+++++|+-+-+-  |                           .|...+....
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g   83 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG   83 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence            4456899999999999999999999999999999866421  0                           1111111000


Q ss_pred             C--------Cccc----cccccceecCCcccc------------ccC-CCCCCCC-CC--CCCCCCCCHHHHHHHHHHHH
Q 044575           60 T--------EVHS----SVYASLRLTSPREIM------------GYT-DFPFVLK-KG--RDVRRFPGHKELWLYLKDFC  111 (454)
Q Consensus        60 ~--------~~~~----~~~~~~~~~~~~~~~------------~~~-~~~~~~~-~~--~~~~~~~~~~~~~~yl~~~~  111 (454)
                      .        ....    ....++..+..+...            .|+ .++++.. .+  .....+.....-+.-+++++
T Consensus        84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~  163 (399)
T KOG2820|consen   84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA  163 (399)
T ss_pred             eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence            0        0000    000111111111111            122 2333321 00  12334556678888999999


Q ss_pred             HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCC
Q 044575          112 QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPS  180 (454)
Q Consensus       112 ~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~  180 (454)
                      .+.|..  ++.+..|..+...+...       ....|.+.++.     .+.++++|+++|.+....+|.
T Consensus       164 ~~~G~i--~~dg~~v~~~~~~~e~~-------~~v~V~Tt~gs-----~Y~akkiI~t~GaWi~klL~~  218 (399)
T KOG2820|consen  164 RELGVI--FRDGEKVKFIKFVDEEG-------NHVSVQTTDGS-----IYHAKKIIFTVGAWINKLLPT  218 (399)
T ss_pred             HHcCeE--EecCcceeeEeeccCCC-------ceeEEEeccCC-----eeecceEEEEecHHHHhhcCc
Confidence            999988  89999999888654331       14566676665     689999999999765555553

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.24  E-value=1e-06  Score=89.15  Aligned_cols=40  Identities=40%  Similarity=0.679  Sum_probs=37.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~   52 (454)
                      ++|+|||||+|||+||..|++.|  ++|+|+|+++++||...
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~   42 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ   42 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence            37999999999999999999987  89999999999999865

>PLN02268 probable polyamine oxidase

Probab=98.24  E-value=1.1e-06  Score=88.57  Aligned_cols=40  Identities=38%  Similarity=0.634  Sum_probs=38.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ++|+|||||.|||+||+.|.+.|++|+|+|+++++||...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence            4799999999999999999999999999999999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.24  E-value=7.9e-06  Score=87.96  Aligned_cols=102  Identities=22%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                         
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~-----------------------------------------  178 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK-----------------------------------------  178 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh-----------------------------------------
Confidence            468999999999999999999999999999986532000                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            .-..+....+.+..+..++.  +++++.|+++.....          ...|++.++.     ++.+|.||+|+|
T Consensus       179 ------~ld~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~~----------~~~v~~~dG~-----~i~~D~Vi~a~G  235 (785)
T TIGR02374       179 ------QLDQTAGRLLQRELEQKGLT--FLLEKDTVEIVGATK----------ADRIRFKDGS-----SLEADLIVMAAG  235 (785)
T ss_pred             ------hcCHHHHHHHHHHHHHcCCE--EEeCCceEEEEcCCc----------eEEEEECCCC-----EEEcCEEEECCC
Confidence                  00145566677777788888  889999988864321          3346666554     789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       236 --~~Pn~~  241 (785)
T TIGR02374       236 --IRPNDE  241 (785)
T ss_pred             --CCcCcH
Confidence              777764

>PLN02568 polyamine oxidase

Probab=98.23  E-value=1.3e-06  Score=89.63  Aligned_cols=44  Identities=30%  Similarity=0.513  Sum_probs=39.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC-----CcEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG-----HRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g-----~~v~vie~~~~~GG~w~~~   54 (454)
                      +.++|+|||||+|||+||..|.+.|     ++|+|+|+++.+||.+...
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~   52 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS   52 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence            3479999999999999999999887     8999999999999987643

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.21  E-value=1.4e-05  Score=80.23  Aligned_cols=94  Identities=33%  Similarity=0.361  Sum_probs=71.8

Q ss_pred             CcEEEECcChHHHHHHHHHHH--------------cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccc
Q 044575           13 KNVCVIGAGPSGLVAARELRK--------------EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREI   78 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~--------------~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+|+|||||+.|+..|..|++              .+.+|++|++.+.+.                              
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------  223 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------  223 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence            489999999999999999875              368999999876431                              


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           79 MGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                                      +.+  ..++.+++.+..++.+++  +.++++|.+++..              .|.+.+++    
T Consensus       224 ----------------~~~--~~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~~--------------~v~~~~g~----  265 (424)
T PTZ00318        224 ----------------GSF--DQALRKYGQRRLRRLGVD--IRTKTAVKEVLDK--------------EVVLKDGE----  265 (424)
T ss_pred             ----------------ccC--CHHHHHHHHHHHHHCCCE--EEeCCeEEEEeCC--------------EEEECCCC----
Confidence                            001  146777888888888988  8889999988632              25555554    


Q ss_pred             EEEEeCEEEEccCCCCCCC
Q 044575          159 VEEVFDAVVVATGHYSYPR  177 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~  177 (454)
                       ++.+|.+|+|+|  ..|+
T Consensus       266 -~i~~d~vi~~~G--~~~~  281 (424)
T PTZ00318        266 -VIPTGLVVWSTG--VGPG  281 (424)
T ss_pred             -EEEccEEEEccC--CCCc
Confidence             789999999999  5554

>PRK10262 thioredoxin reductase; Provisional

Probab=98.21  E-value=1.8e-05  Score=76.27  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|..|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-------------------------------------------  182 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------------------------------------------  182 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-------------------------------------------
Confidence            5789999999999999999999999999999865320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC-CCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK-ADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~d~vViAt  170 (454)
                             ....+.+.+.+..+..++.  +.+++.|.+|+..+..         .-.|++.++. .+...++.+|.||+|+
T Consensus       183 -------~~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~---------~~~v~~~~~~~~~~~~~i~~D~vv~a~  244 (321)
T PRK10262        183 -------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMG---------VTGVRLRDTQNSDNIESLDVAGLFVAI  244 (321)
T ss_pred             -------CCHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCcc---------EEEEEEEEcCCCCeEEEEECCEEEEEe
Confidence                   0023344455555555666  7889999998754321         2235554432 1234578999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       245 G--~~p~~~  251 (321)
T PRK10262        245 G--HSPNTA  251 (321)
T ss_pred             C--CccChh
Confidence            9  777654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.21  E-value=8.8e-06  Score=81.90  Aligned_cols=145  Identities=23%  Similarity=0.227  Sum_probs=78.8

Q ss_pred             EECcChHHHHHHHHHHHcCCcEEEEeeCCC--CCcccccCCC------CCCCCcc---c--cccccce------------
Q 044575           17 VIGAGPSGLVAARELRKEGHRVVVLEQNHD--VGGQWLYDPN------TDQTEVH---S--SVYASLR------------   71 (454)
Q Consensus        17 IIGaG~aGl~aA~~l~~~g~~v~vie~~~~--~GG~w~~~~~------~~~~~~~---~--~~~~~~~------------   71 (454)
                      |||+|.+|++||.++++.|.+|+|+||.+.  .||.-.....      .......   +  ..+..+.            
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~   80 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS   80 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Confidence            799999999999999999999999999874  4554222111      0000000   0  0000000            


Q ss_pred             ----ecCCcccccc--CCCCCCCCC-CC----CCCCCC--CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccc
Q 044575           72 ----LTSPREIMGY--TDFPFVLKK-GR----DVRRFP--GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELI  138 (454)
Q Consensus        72 ----~~~~~~~~~~--~~~~~~~~~-~~----~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~  138 (454)
                          .+.+..+-.+  .+.++.... +.    ....|+  ....+.+.|.+.+++.++.  ++++++|+++...++.   
T Consensus        81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~---  155 (432)
T TIGR02485        81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFD---  155 (432)
T ss_pred             HHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCC---
Confidence                0001100000  112221100 00    011122  3567788888888888887  9999999998765312   


Q ss_pred             cCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          139 IGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                            .+.+-+.... + ...+.++.||+|||.++
T Consensus       156 ------g~v~gv~~~~-~-~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       156 ------GAHDGPLTTV-G-THRITTQALVLAAGGLG  183 (432)
T ss_pred             ------CeEEEEEEcC-C-cEEEEcCEEEEcCCCcc
Confidence                  3333222111 1 13678999999999543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.20  E-value=1.8e-06  Score=83.57  Aligned_cols=44  Identities=34%  Similarity=0.597  Sum_probs=39.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCccccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~   53 (454)
                      ....+|||||||.|||+||.+|.+.|+ +++|+|..+++||..+.
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t   63 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT   63 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence            346789999999999999999998875 89999999999998764

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.19  E-value=1.9e-06  Score=84.95  Aligned_cols=39  Identities=38%  Similarity=0.645  Sum_probs=37.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~   52 (454)
                      +|+|||||.+||+||..|.+.+  .+++|||+.+++||...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~   42 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR   42 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence            6999999999999999999998  89999999999999876

>PRK07233 hypothetical protein; Provisional

Probab=98.18  E-value=1.8e-06  Score=86.93  Aligned_cols=39  Identities=38%  Similarity=0.694  Sum_probs=37.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +|+|||||++||+||..|.+.|++|+|+|+++.+||.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~   39 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA   39 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence            599999999999999999999999999999999999865

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.16  E-value=2.3e-06  Score=83.42  Aligned_cols=40  Identities=35%  Similarity=0.594  Sum_probs=37.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~   41 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY   41 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence            5899999999999999999999999999999999999654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.16  E-value=1.9e-05  Score=81.18  Aligned_cols=101  Identities=23%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------  388 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------  388 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------------------------
Confidence            4799999999999999999999999999999865320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             . .   ..+.+..+. .++.  +++++.|.++...++.         ...|++.++.++...++.+|.|++|+
T Consensus       389 -------~-~---~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~---------v~~v~~~~~~~~~~~~i~~D~vi~a~  446 (515)
T TIGR03140       389 -------A-D---KVLQDKLKSLPNVD--ILTSAQTTEIVGDGDK---------VTGIRYQDRNSGEEKQLDLDGVFVQI  446 (515)
T ss_pred             -------h-h---HHHHHHHhcCCCCE--EEECCeeEEEEcCCCE---------EEEEEEEECCCCcEEEEEcCEEEEEe
Confidence                   0 0   122333333 4666  8889999988754221         22355555433444578999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       447 G--~~Pn~~  453 (515)
T TIGR03140       447 G--LVPNTE  453 (515)
T ss_pred             C--CcCCch
Confidence            9  777764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02576 protoporphyrinogen oxidase

Probab=98.16  E-value=2.3e-06  Score=87.76  Aligned_cols=42  Identities=48%  Similarity=0.657  Sum_probs=39.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~   52 (454)
                      ..+||+|||||++||+||..|.+. |.+|+|+|+++.+||...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence            457999999999999999999999 999999999999999865

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.15  E-value=2.2e-06  Score=87.10  Aligned_cols=40  Identities=43%  Similarity=0.597  Sum_probs=38.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||++||+||..|.+.    |++|+|+|+++++||...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~   46 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ   46 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence            6899999999999999999998    999999999999999876

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.14  E-value=2.5e-06  Score=87.34  Aligned_cols=41  Identities=49%  Similarity=0.569  Sum_probs=38.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      +||+|||||++||+||..|++.|++|+|+|+++.+||....
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t   42 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT   42 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccce
Confidence            68999999999999999999999999999999999997653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PTZ00367 squalene epoxidase; Provisional

Probab=98.14  E-value=2.1e-05  Score=81.10  Aligned_cols=35  Identities=31%  Similarity=0.570  Sum_probs=32.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35799999999999999999999999999999975

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=2.4e-06  Score=84.07  Aligned_cols=41  Identities=37%  Similarity=0.526  Sum_probs=38.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      ++|+|+|||.|||+||+.|++.|++|+|+|+++.+||.+..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s   41 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS   41 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence            47999999999999999999999999999999999997543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.13  E-value=3.2e-05  Score=74.73  Aligned_cols=57  Identities=30%  Similarity=0.356  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCC
Q 044575          101 KELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY  173 (454)
Q Consensus       101 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~  173 (454)
                      .++..-+.++.+.++.+  ++|+++|.+|+..+..         ...|.+.++.     ++.+|+||+|.|+.
T Consensus       173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~---------~~~v~~~~g~-----~i~~~~vvlA~Grs  229 (486)
T COG2509         173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNE---------VLGVKLTKGE-----EIEADYVVLAPGRS  229 (486)
T ss_pred             HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCc---------eEEEEccCCc-----EEecCEEEEccCcc
Confidence            46778888888989988  9999999999987643         3567777665     89999999999974

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.12  E-value=1.5e-05  Score=87.27  Aligned_cols=35  Identities=37%  Similarity=0.556  Sum_probs=32.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .+||+|||||.||++||..+++.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            57999999999999999999999999999999764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.11  E-value=1e-05  Score=78.28  Aligned_cols=137  Identities=21%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..++|+|||||-++...+..|.+.+.  +|+++-|+..+-      +.-.++.       ......|..+-.|...|...
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~------~~d~s~f-------~ne~f~P~~v~~f~~l~~~~  255 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF------PMDDSPF-------VNEIFSPEYVDYFYSLPDEE  255 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E------B----CC-------HHGGGSHHHHHHHHTS-HHH
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC------CCccccc-------hhhhcCchhhhhhhcCCHHH
Confidence            46899999999999999999999864  899999876320      0000000       00011111111111111100


Q ss_pred             CC----CCC--CCCCCCHHHHHH-----HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KK----GRD--VRRFPGHKELWL-----YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~----~~~--~~~~~~~~~~~~-----yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                      +.    ...  ...-.+.+-+.+     |-+++..+..+.  +..+++|++++..+++         +|.+++.+..++.
T Consensus       256 R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~--l~~~~~v~~~~~~~~~---------~~~l~~~~~~~~~  324 (341)
T PF13434_consen  256 RRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLR--LLPNTEVTSAEQDGDG---------GVRLTLRHRQTGE  324 (341)
T ss_dssp             HHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SE--EETTEEEEEEEEES-S---------SEEEEEEETTT--
T ss_pred             HHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeE--EeCCCEEEEEEECCCC---------EEEEEEEECCCCC
Confidence            00    000  000011222211     222222222233  7779999999988744         8999999877677


Q ss_pred             EEEEEeCEEEEccC
Q 044575          158 VVEEVFDAVVVATG  171 (454)
Q Consensus       158 ~~~~~~d~vViAtG  171 (454)
                      ..++.+|+||+|||
T Consensus       325 ~~~~~~D~VilATG  338 (341)
T PF13434_consen  325 EETLEVDAVILATG  338 (341)
T ss_dssp             EEEEEESEEEE---
T ss_pred             eEEEecCEEEEcCC
Confidence            78899999999999

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.10  E-value=1.5e-05  Score=78.57  Aligned_cols=36  Identities=33%  Similarity=0.398  Sum_probs=33.0

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      +|+|||||.+|+.+|..|++.|++|+|||+++..+-
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            799999999999999999999999999998776543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=1.2e-05  Score=79.14  Aligned_cols=45  Identities=31%  Similarity=0.477  Sum_probs=36.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP   55 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~   55 (454)
                      ..+||+|||||.||+.||.+.++.|.+++++--+-+.=|.+..++
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNP   47 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNP   47 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccccc
Confidence            458999999999999999999999999999887665444444333

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.10  E-value=1.4e-05  Score=76.24  Aligned_cols=36  Identities=39%  Similarity=0.610  Sum_probs=33.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      ..+|+|||||.+|+++|..|.++|++|+|+|++..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            368999999999999999999999999999998765

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.09  E-value=3.8e-05  Score=73.11  Aligned_cols=99  Identities=23%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|++|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------------------------------------------  177 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------------------------------------------  177 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------------------------------------
Confidence            4689999999999999999999999999999865220                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ....    +.+.+++. ++.  +.+++++.+++..+ .         .-.+++.+...+...++.+|.||+|+
T Consensus       178 -------~~~~----~~~~l~~~~gv~--~~~~~~v~~i~~~~-~---------~~~v~~~~~~~g~~~~i~~D~vi~a~  234 (300)
T TIGR01292       178 -------AEKI----LLDRLRKNPNIE--FLWNSTVKEIVGDN-K---------VEGVKIKNTVTGEEEELKVDGVFIAI  234 (300)
T ss_pred             -------cCHH----HHHHHHhCCCeE--EEeccEEEEEEccC-c---------EEEEEEEecCCCceEEEEccEEEEee
Confidence                   0012    22233333 666  77889999987542 1         22344433222334578999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       235 G--~~~~~  240 (300)
T TIGR01292       235 G--HEPNT  240 (300)
T ss_pred             C--CCCCh
Confidence            9  66665

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.09  E-value=4.8e-05  Score=78.06  Aligned_cols=39  Identities=33%  Similarity=0.438  Sum_probs=35.4

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG   48 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G   48 (454)
                      ...+||+|||||.||+.||..+++.|.+|+|+||....+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            345899999999999999999999999999999987654

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.08  E-value=3.1e-06  Score=86.99  Aligned_cols=39  Identities=41%  Similarity=0.480  Sum_probs=36.9

Q ss_pred             EEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        15 VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      |+|||||.+||+||..|++.|++|+|+|+++.+||....
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t   39 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV   39 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence            689999999999999999999999999999999998763

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.07  E-value=3.5e-05  Score=74.89  Aligned_cols=107  Identities=23%  Similarity=0.239  Sum_probs=85.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      ...|+++|+|+.|+.+|..|...+.+|++|++.+.+                                      ++    
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------------------~~----  250 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------------------LP----  250 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------------------hh----
Confidence            567999999999999999999999999999997632                                      00    


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         .  .-...+.+.+..|.++.++.  +..++.+.+++..+++.        .-.|.+.++.     ++.+|-||+++|
T Consensus       251 ---~--lf~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Ge--------v~~V~l~dg~-----~l~adlvv~GiG  310 (478)
T KOG1336|consen  251 ---R--LFGPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGE--------VSEVKLKDGK-----TLEADLVVVGIG  310 (478)
T ss_pred             ---h--hhhHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCc--------EEEEEeccCC-----EeccCeEEEeec
Confidence               0  12256777788888888888  88999999988776442        4567777766     899999999999


Q ss_pred             CCCCCCCCCCC
Q 044575          172 HYSYPRLPSIK  182 (454)
Q Consensus       172 ~~~~p~~p~i~  182 (454)
                        .+|+.+.+.
T Consensus       311 --~~p~t~~~~  319 (478)
T KOG1336|consen  311 --IKPNTSFLE  319 (478)
T ss_pred             --ccccccccc
Confidence              899988655

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.06  E-value=1.1e-05  Score=79.32  Aligned_cols=89  Identities=12%  Similarity=0.103  Sum_probs=64.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh---cCeEEEecccCCc--Cccc-----------------hhhhccC-CCeEEcCceeEE
Q 044575          207 VVVVVGNSLSGQDISMELVEV---AKEVHLSAKSLNI--SEGL-----------------SKVISKH-NNLHLHPQIDCL  263 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~---~~~V~l~~r~~~~--~~~~-----------------~~~l~~~-~~i~~~~~v~~v  263 (454)
                      +|||||||..|+.+|..+.+.   ..+|+++++++..  .+.+                 .+.+.+. .+++ ...++.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~-~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFV-IAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEE-EEEEEEE
Confidence            589999999999999999643   5789999987754  1111                 1112222 2343 3567888


Q ss_pred             ecCC-cEEEeCCCEEeeceEEEccCcccCCcCCC
Q 044575          264 REDG-RVTFVDGCWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       264 ~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~  296 (454)
                      +.++ .|.+.+|+++++|.+|+|||..+..+-+.
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~  113 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE  113 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence            7543 68888998999999999999998876544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02730 carot_isom carotene isomerase

Probab=98.05  E-value=4.8e-06  Score=85.28  Aligned_cols=41  Identities=41%  Similarity=0.574  Sum_probs=38.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      +||+|||||.+||++|..|++.|++|+|+||++.+||....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~   41 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY   41 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence            58999999999999999999999999999999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.05  E-value=1.2e-05  Score=76.75  Aligned_cols=84  Identities=15%  Similarity=0.275  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc----------------chhhh---------------------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG----------------LSKVI---------------------  248 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~----------------~~~~l---------------------  248 (454)
                      ..|+|||+|++|+-.|..+++.|.+|.++++.+.+...                ..+.+                     
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            47999999999999999999999999999998876100                00000                     


Q ss_pred             ---------------------------------------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEcc
Q 044575          249 ---------------------------------------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCT  286 (454)
Q Consensus       249 ---------------------------------------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~at  286 (454)
                                                             ...+.+++++.|.++..++   .+.+.+|+++.||.+|+||
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAt  163 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILAT  163 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEec
Confidence                                                   1123578889999998663   5677788899999999999


Q ss_pred             Ccc
Q 044575          287 GYS  289 (454)
Q Consensus       287 G~~  289 (454)
                      |-.
T Consensus       164 GG~  166 (408)
T COG2081         164 GGK  166 (408)
T ss_pred             CCc
Confidence            955

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.05  E-value=4.5e-06  Score=84.86  Aligned_cols=40  Identities=33%  Similarity=0.492  Sum_probs=36.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHc------CCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~------g~~v~vie~~~~~GG~w~   52 (454)
                      ++|+|||||+|||+||..|.+.      |.+|+|+|+++++||...
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~   47 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH   47 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence            5799999999999999999986      379999999999999865

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.04  E-value=5e-05  Score=78.16  Aligned_cols=101  Identities=25%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|+..+.+|+++++.+.+.                                           
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------------------  387 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------------------  387 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-------------------------------------------
Confidence            4789999999999999999999999999999875320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             . .   .++.+.... .++.  +++++.|.++...++.         .-.+++.+..++...++.+|.|++|+
T Consensus       388 -------~-~---~~l~~~l~~~~gI~--i~~~~~v~~i~~~~g~---------v~~v~~~~~~~g~~~~i~~D~v~~~~  445 (517)
T PRK15317        388 -------A-D---QVLQDKLRSLPNVT--IITNAQTTEVTGDGDK---------VTGLTYKDRTTGEEHHLELEGVFVQI  445 (517)
T ss_pred             -------c-c---HHHHHHHhcCCCcE--EEECcEEEEEEcCCCc---------EEEEEEEECCCCcEEEEEcCEEEEeE
Confidence                   0 0   122222222 3666  8899999998754221         22355555433445579999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       446 G--~~p~~~  452 (517)
T PRK15317        446 G--LVPNTE  452 (517)
T ss_pred             C--CccCch
Confidence            9  677654

>PLN02676 polyamine oxidase

Probab=98.02  E-value=6.5e-06  Score=83.74  Aligned_cols=44  Identities=34%  Similarity=0.601  Sum_probs=40.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~   54 (454)
                      ..+||+|||||++||+||.+|++.|. +|+|+|+++.+||.+...
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~   69 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA   69 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence            35799999999999999999999998 699999999999987653

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.00  E-value=6.5e-06  Score=83.45  Aligned_cols=39  Identities=38%  Similarity=0.618  Sum_probs=37.0

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +|+|||||++||+||..|.+.|++|+|+|+++.+||.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~   39 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA   39 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence            589999999999999999999999999999999999765

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.00  E-value=6.1e-06  Score=82.36  Aligned_cols=44  Identities=23%  Similarity=0.361  Sum_probs=41.2

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      |++.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|.
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            34569999999999999999999999999999999999999987

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.00  E-value=8.6e-06  Score=78.86  Aligned_cols=42  Identities=45%  Similarity=0.725  Sum_probs=39.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ...||+|||||.+||++|..|.+.|++|+|+|.++++||.+.
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~   47 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence            458999999999999999999999999999999999999765

>PLN02529 lysine-specific histone demethylase 1

Probab=97.96  E-value=9.3e-06  Score=85.45  Aligned_cols=43  Identities=42%  Similarity=0.608  Sum_probs=39.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      ..++|+|||||++|++||+.|++.|++|+|+|+++.+||....
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t  201 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT  201 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence            4689999999999999999999999999999999999987543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.91  E-value=1.8e-05  Score=70.74  Aligned_cols=87  Identities=21%  Similarity=0.378  Sum_probs=51.6

Q ss_pred             EEEcCCCCHHHHHHHHhhhcCe-EEEecccCCcC--------------ccc-------hhh-------------------
Q 044575          209 VVVGNSLSGQDISMELVEVAKE-VHLSAKSLNIS--------------EGL-------SKV-------------------  247 (454)
Q Consensus       209 vVVG~G~sg~e~A~~l~~~~~~-V~l~~r~~~~~--------------~~~-------~~~-------------------  247 (454)
                      +|||+|++|+-+|..|.+.|.+ |++++|.+.+.              +.+       .+.                   
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999998 99999986651              000       000                   


Q ss_pred             -------h----ccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCc--ccCCcCC
Q 044575          248 -------I----SKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGY--SYSFPFL  295 (454)
Q Consensus       248 -------l----~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~--~~~~~~l  295 (454)
                             +    .++ .++..++.|+++..++   .|++.+++++.+|.||+|||.  .|..|-+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~  145 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI  145 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence                   0    000 1366778888887444   578888888899999999997  4554433

...

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.85  E-value=3.8e-05  Score=74.54  Aligned_cols=82  Identities=24%  Similarity=0.365  Sum_probs=54.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEe-cccCCcC-----cc-------------------------------------
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLS-AKSLNIS-----EG-------------------------------------  243 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~-~r~~~~~-----~~-------------------------------------  243 (454)
                      .|+|||||..|+|.|..+++.|.+|.|+ .+.+.+.     +.                                     
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999999 3444330     00                                     


Q ss_pred             --------------------chhhhccCCCe-EEcCceeEEec-CC---cEEEeCCCEEeeceEEEccCc
Q 044575          244 --------------------LSKVISKHNNL-HLHPQIDCLRE-DG---RVTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       244 --------------------~~~~l~~~~~i-~~~~~v~~v~~-~~---~v~~~dG~~i~~D~vI~atG~  288 (454)
                                          +.+.+.++.++ +....|+++.. ++   .|.+.+|+++.+|.||.|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                                01111222222 23566777753 33   578889999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.84  E-value=1.8e-05  Score=80.33  Aligned_cols=39  Identities=38%  Similarity=0.589  Sum_probs=36.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +|+|||||.+|+++|..|.+.|++|+|+|+++.+||...
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   39 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVG   39 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence            589999999999999999999999999999999999754

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.83  E-value=1e-05  Score=72.14  Aligned_cols=88  Identities=22%  Similarity=0.332  Sum_probs=60.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc------------------Cccch-----hhh----ccCCCeEEcCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI------------------SEGLS-----KVI----SKHNNLHLHPQ  259 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~------------------~~~~~-----~~l----~~~~~i~~~~~  259 (454)
                      +|+|||||+.|+.+|..|++.+.+|+++.+.+..                  ...+.     +..    ....++.....
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            5899999999999999999999999999776642                  00000     111    12235556677


Q ss_pred             eeEEecCCc------EEE-----eCCCEEeeceEEEccCcccCCcC
Q 044575          260 IDCLREDGR------VTF-----VDGCWVTADTILYCTGYSYSFPF  294 (454)
Q Consensus       260 v~~v~~~~~------v~~-----~dG~~i~~D~vI~atG~~~~~~~  294 (454)
                      +.++.....      +..     .++.++.+|.+|+|||..|..+.
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~  126 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN  126 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence            777764432      121     23456889999999999876543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.82  E-value=2.2e-05  Score=83.11  Aligned_cols=42  Identities=50%  Similarity=0.701  Sum_probs=38.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ..++|+|||||++|++||+.|.+.|++|+|+|+++.+||...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~  278 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK  278 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence            358899999999999999999999999999999999998754

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.82  E-value=4.7e-05  Score=74.05  Aligned_cols=126  Identities=18%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             CCcEEEEeeCCCCC--------cccccCCCCCCC-Cc------cccccccceecCCcccccc-CCCCCCCCCCCCCCCCC
Q 044575           35 GHRVVVLEQNHDVG--------GQWLYDPNTDQT-EV------HSSVYASLRLTSPREIMGY-TDFPFVLKKGRDVRRFP   98 (454)
Q Consensus        35 g~~v~vie~~~~~G--------G~w~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   98 (454)
                      |.+|+|+|+++.+|        |.|+.++..+.. ..      ...++..+..-.+...+.| .....+.....+...||
T Consensus         1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP   80 (376)
T TIGR03862         1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP   80 (376)
T ss_pred             CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence            46899999999987        567666532210 00      0001111111122222222 12222111122345565


Q ss_pred             ---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575           99 ---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus        99 ---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                         ...++.+-|...+++.++.  ++++++|.+|+.   +         .|.+.+..+.    ..+.+|+||||||..+.
T Consensus        81 ~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i~~---~---------~~~v~~~~~~----~~~~a~~vIlAtGG~s~  142 (376)
T TIGR03862        81 VEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGWQG---G---------TLRFETPDGQ----STIEADAVVLALGGASW  142 (376)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEeC---C---------cEEEEECCCc----eEEecCEEEEcCCCccc
Confidence               5678999999999999998  999999999921   1         6777764321    15899999999997555


Q ss_pred             CCC
Q 044575          176 PRL  178 (454)
Q Consensus       176 p~~  178 (454)
                      |..
T Consensus       143 p~~  145 (376)
T TIGR03862       143 SQL  145 (376)
T ss_pred             ccc
Confidence            543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.82  E-value=8.6e-05  Score=70.04  Aligned_cols=34  Identities=38%  Similarity=0.642  Sum_probs=31.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      ...||+|||||.+|-+.|..|.+.|.+|.||||.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            3589999999999999999999999999999985

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.79  E-value=0.00015  Score=70.82  Aligned_cols=34  Identities=32%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~   45 (454)
                      .++|+|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            36899999999999999999999987 99999854

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.78  E-value=2.1e-05  Score=73.20  Aligned_cols=40  Identities=38%  Similarity=0.613  Sum_probs=36.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ..+|+|||+|.+||+||..|.+. ++|++||...++||.-+
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~   47 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence            46899999999999999999876 79999999999999865

>PLN02487 zeta-carotene desaturase

Probab=97.77  E-value=2.9e-05  Score=79.88  Aligned_cols=41  Identities=37%  Similarity=0.546  Sum_probs=38.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      .++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~  115 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG  115 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence            35999999999999999999999999999999999999764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.76  E-value=0.00038  Score=70.31  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||||..|+-+|..|++.|.+|+++++++
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4789999999999999999999999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06847 hypothetical protein; Provisional

Probab=97.73  E-value=8.8e-05  Score=73.17  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            36899999999999999999999999999998764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.70  E-value=0.00049  Score=69.77  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..++|+|||+|..|+-+|..|.+.|. +|+++++++
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            35789999999999999999999998 899999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.70  E-value=5.8e-05  Score=77.07  Aligned_cols=34  Identities=38%  Similarity=0.529  Sum_probs=31.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.69  E-value=4.7e-05  Score=75.29  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||||++|+=+|..+++.|.+|.+++|.+..
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~   35 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV   35 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence            5899999999999999999999999999999876

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.69  E-value=0.00032  Score=72.79  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            4789999999999999999999999999999865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12831 putative oxidoreductase; Provisional

Probab=97.69  E-value=0.00058  Score=69.23  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|+|||||..|+-+|..|.+.|.+|+++.+++
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            35799999999999999999999999999999864

>PLN03000 amine oxidase

Probab=97.68  E-value=5.1e-05  Score=80.58  Aligned_cols=44  Identities=41%  Similarity=0.618  Sum_probs=40.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      ..++|+|||||++|+++|..|.+.|++|+|+|+++++||.+...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~  226 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK  226 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence            35899999999999999999999999999999999999986543

>PLN02612 phytoene desaturase

Probab=97.67  E-value=5.4e-05  Score=78.58  Aligned_cols=42  Identities=33%  Similarity=0.584  Sum_probs=38.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ..++|+|||||++|++||.+|.+.|++|+|+|+++.+||...
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~  133 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA  133 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence            357899999999999999999999999999999999999753

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.65  E-value=8.1e-05  Score=71.26  Aligned_cols=101  Identities=26%  Similarity=0.353  Sum_probs=72.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--------------CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--------------GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREI   78 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--------------g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      -.+|||||||.|...|.+|...              ..+|+++|+.+++                               
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i-------------------------------  267 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI-------------------------------  267 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-------------------------------
Confidence            4799999999999999999642              3689999998754                               


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           79 MGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                           .++-            .+.+.+|.++...+.++.  ++.++.|..|...            ...+.+.+   ++.
T Consensus       268 -----L~mF------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~~------------~I~~~~~~---g~~  313 (491)
T KOG2495|consen  268 -----LNMF------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTEK------------TIHAKTKD---GEI  313 (491)
T ss_pred             -----HHHH------------HHHHHHHHHHHhhhccce--eecccEEEeecCc------------EEEEEcCC---Cce
Confidence                 1111            156667777777777777  8889999888744            33333332   345


Q ss_pred             EEEEeCEEEEccCCCCCCCC
Q 044575          159 VEEVFDAVVVATGHYSYPRL  178 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~  178 (454)
                      .++.|--+|=|||.-.+|.+
T Consensus       314 ~~iPYG~lVWatG~~~rp~~  333 (491)
T KOG2495|consen  314 EEIPYGLLVWATGNGPRPVI  333 (491)
T ss_pred             eeecceEEEecCCCCCchhh
Confidence            68999999999995444443

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.64  E-value=6.3e-05  Score=73.73  Aligned_cols=35  Identities=43%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      .||+|||||++|+.+|..|++.|++|+|||+++..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            58999999999999999999999999999987654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.63  E-value=0.00015  Score=70.92  Aligned_cols=32  Identities=41%  Similarity=0.551  Sum_probs=30.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ||+|||+|.|||++|.+|.+. ++|+|+.|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence            899999999999999999988 99999999764

>PLN02976 amine oxidase

Probab=97.61  E-value=6.6e-05  Score=82.64  Aligned_cols=43  Identities=47%  Similarity=0.816  Sum_probs=40.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~   54 (454)
                      .++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~  735 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD  735 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence            4789999999999999999999999999999999999987654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.60  E-value=7e-05  Score=76.36  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||+||+|+.+|+.|++.|++|++||+....||.|.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~   40 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI   40 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence            5899999999999999999999999999999999988775

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05868 hypothetical protein; Validated

Probab=97.60  E-value=0.00019  Score=70.74  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            47999999999999999999999999999987654

>PRK07236 hypothetical protein; Provisional

Probab=97.60  E-value=0.00019  Score=71.06  Aligned_cols=87  Identities=24%  Similarity=0.319  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc----------cchhhhcc------------------------
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE----------GLSKVISK------------------------  250 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~----------~~~~~l~~------------------------  250 (454)
                      ..+|+|||||.+|+.+|..|++.|.+|+++++.+....          ...+.+.+                        
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            47899999999999999999999999999999764210          00000000                        


Q ss_pred             --------------------------CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575          251 --------------------------HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       251 --------------------------~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                                ...++.+..+++++.++   .|++.||+++.+|.||.|-|....
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence                                      01255566677776433   477889999999999999997643

>PRK06753 hypothetical protein; Provisional

Probab=97.57  E-value=0.00019  Score=70.78  Aligned_cols=85  Identities=19%  Similarity=0.300  Sum_probs=62.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc------------------cchhh---------------------
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE------------------GLSKV---------------------  247 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~------------------~~~~~---------------------  247 (454)
                      +|+|||||++|+-+|..|++.|.+|+++++.+.+..                  ++.+.                     
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            699999999999999999999999999998875400                  00000                     


Q ss_pred             ----------------------hcc---CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575          248 ----------------------ISK---HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       248 ----------------------l~~---~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                            |.+   ...++.+..++++..++   .|++++|+++++|+||-|.|....
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence                                  000   01255677777775433   467789999999999999997633

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.53  E-value=0.00012  Score=71.90  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      .+||+|||||..|--||.-..-+|+++.++|+++.-.|+-
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence            5899999999999999999999999999999988655543

>PRK07588 hypothetical protein; Provisional

Probab=97.52  E-value=0.00025  Score=70.45  Aligned_cols=34  Identities=18%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||||++|+-+|..|++.|.+|+++++.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            6999999999999999999999999999987654

>PLN02463 lycopene beta cyclase

Probab=97.52  E-value=0.00027  Score=70.93  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||+|++|.-+|..|++.|.+|.++++.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            379999999999999999999999999999865

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.48  E-value=0.00013  Score=79.57  Aligned_cols=83  Identities=16%  Similarity=0.016  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-------cc--hh--------hhccC-CCeEEcCceeEEec
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-------GL--SK--------VISKH-NNLHLHPQIDCLRE  265 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-------~~--~~--------~l~~~-~~i~~~~~v~~v~~  265 (454)
                      .+|+|+|||+|++|+-+|..|++.|.+|+++++.+.+..       .+  .+        .+.+. +++..+..+     
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v-----  379 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV-----  379 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe-----
Confidence            589999999999999999999999999999999876521       11  10        11111 123332211     


Q ss_pred             CCcEEEeCCCEEeeceEEEccCcc-cC
Q 044575          266 DGRVTFVDGCWVTADTILYCTGYS-YS  291 (454)
Q Consensus       266 ~~~v~~~dG~~i~~D~vI~atG~~-~~  291 (454)
                      +..+.+++.....+|.||+|||.. |.
T Consensus       380 G~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        380 GKTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence            123666666666799999999984 54

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.47  E-value=0.0014  Score=61.02  Aligned_cols=44  Identities=36%  Similarity=0.457  Sum_probs=36.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCC---------CCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHD---------VGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~---------~GG~w~~~   54 (454)
                      .+.+|+|||||-.|.+.|..|+++    |++|+|+|+.+.         +||.|..-
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF  141 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF  141 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence            367999999999999999999764    789999999775         57776543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.47  E-value=0.00018  Score=77.87  Aligned_cols=82  Identities=12%  Similarity=0.064  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh-----------------hhcc-CCCeEEcCceeEEe
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK-----------------VISK-HNNLHLHPQIDCLR  264 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~-----------------~l~~-~~~i~~~~~v~~v~  264 (454)
                      ..+|+|+|||+|++|+.+|..|++.|.+|+++++.+.+...+..                 .+.+ .++++.+..+    
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V----  612 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP----  612 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee----
Confidence            35789999999999999999999999999999987654211100                 0111 1233333332    


Q ss_pred             cCCcEEEeCCCEEeeceEEEccCcccC
Q 044575          265 EDGRVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       265 ~~~~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                         .+.+.+.....+|.||+|||..+.
T Consensus       613 ---di~le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        613 ---DLTVEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ---EEEhhhheeccCCEEEECcCCCCC
Confidence               123334445569999999999854

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.44  E-value=0.00056  Score=67.22  Aligned_cols=83  Identities=22%  Similarity=0.406  Sum_probs=60.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCcC---------ccch--------hhhc------------------
Q 044575          207 VVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNIS---------EGLS--------KVIS------------------  249 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~~---------~~~~--------~~l~------------------  249 (454)
                      .|+|||+|.+|+.+|..|++.  +.+|.++++.+...         ..+.        ..+.                  
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            389999999999999999987  89999999876331         1111        0000                  


Q ss_pred             ----------------c--CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCccc
Q 044575          250 ----------------K--HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY  290 (454)
Q Consensus       250 ----------------~--~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~  290 (454)
                                      +  ...++.+..|+++..++ |+++||+++++|.||.|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-VDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-EEECCCCEEEeeEEEECCCCCC
Confidence                            0  01255667788886554 8889999999999999999765

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.44  E-value=0.0044  Score=66.92  Aligned_cols=34  Identities=26%  Similarity=0.515  Sum_probs=31.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~   45 (454)
                      .++|+|||||..|+-+|..+.+.|.+ |+++++++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            47899999999999999999999987 99999864

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.44  E-value=0.00017  Score=69.04  Aligned_cols=42  Identities=36%  Similarity=0.498  Sum_probs=36.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~   52 (454)
                      ..++|+|+|||.+||++|.+|++.+.  .|+++|+.+++||-..
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir   53 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR   53 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence            35799999999999999999999865  5677999999987544

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.43  E-value=0.00063  Score=68.37  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCe-EEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKE-VHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~-V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+-+|..|.+.+.. +.++++...+
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~   44 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV   44 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence            5799999999999999999999988 9999998654

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.42  E-value=0.00042  Score=68.90  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+|+|||+|.+|+-+|..|++.|.+|++++|.+.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            368999999999999999999999999999987654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.41  E-value=0.00024  Score=72.80  Aligned_cols=35  Identities=34%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |+|+|||+|+||+-.|..|.+.|-+++++++++.+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i   36 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI   36 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence            79999999999999999999999999999998876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.40  E-value=0.00012  Score=69.60  Aligned_cols=36  Identities=31%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVG   48 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~G   48 (454)
                      ||+||||+|+||..+|.+|++.+ .+|+|+|+.+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            69999999999999999999987 6999999987543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.36  E-value=0.00062  Score=63.00  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .-.|+|||+|++|+=+|..+++.+.+|.+++|...+
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~   56 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF   56 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            357999999999999999999999999999998654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.36  E-value=0.00082  Score=57.35  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=25.5

Q ss_pred             EEEcCCCCHHHHHHHHhhhc-----CeEEEecccC
Q 044575          209 VVVGNSLSGQDISMELVEVA-----KEVHLSAKSL  238 (454)
Q Consensus       209 vVVG~G~sg~e~A~~l~~~~-----~~V~l~~r~~  238 (454)
                      +|||+|++|+-++..|.+..     .+|+++++.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            59999999999999999873     4699998844

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.35  E-value=0.0005  Score=69.41  Aligned_cols=58  Identities=17%  Similarity=0.030  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          100 HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ..-+...+...|+..|..  |..++.|++|....++         .|-|.+..+      .+++.++|-|+|.++
T Consensus       186 P~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~---------~~gVeT~~G------~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  186 PAGLCQALARAASALGAL--VIENCPVTGLHVETDK---------FGGVETPHG------SIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCC---------ccceeccCc------ceecceEEechhHHH
Confidence            345667778888888988  8899999999876654         777888776      689999999999765

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.35  E-value=0.0025  Score=63.16  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccccC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~~~   54 (454)
                      .++.=|||+|.|+|+||..|.+.    |-+|+|+|+.+..||.+.-.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~   48 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA   48 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence            36788999999999999999886    56999999999988876443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.35  E-value=0.0091  Score=60.66  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .++|+|||+|..|+.+|..+.+.|. +|+++++++
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            4789999999999999999999996 799999865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.30  E-value=0.0022  Score=65.24  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=29.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .++|+|||+|+.|+-+|..+.+.|. +|++++...
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            4789999999999999999999886 788777543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.29  E-value=0.0083  Score=63.57  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=31.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..++|+|||||..|+-+|..+++.|. +|+++.+++
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            35789999999999999999999987 699999864

>PRK02106 choline dehydrogenase; Validated

Probab=97.28  E-value=0.00027  Score=73.62  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=32.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~   45 (454)
                      ..+|+||||+|+||+.+|.+|++ .|.+|+|+|+.+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            45899999999999999999999 799999999985

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.26  E-value=0.00083  Score=66.20  Aligned_cols=84  Identities=20%  Similarity=0.330  Sum_probs=61.2

Q ss_pred             EEEEcCCCCHHHHHHHH--hhhcCeEEEecccCCc--C---------cc---chhhh-----------------------
Q 044575          208 VVVVGNSLSGQDISMEL--VEVAKEVHLSAKSLNI--S---------EG---LSKVI-----------------------  248 (454)
Q Consensus       208 vvVVG~G~sg~e~A~~l--~~~~~~V~l~~r~~~~--~---------~~---~~~~l-----------------------  248 (454)
                      |+|||+|++|.-+|..|  ++.+.+|.++++.+..  .         +.   +.+.+                       
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            89999999999999999  7789999999876543  0         00   11110                       


Q ss_pred             ----------------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575          249 ----------------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       249 ----------------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                      ...+.++....|+++..++   .|+++||+++.++.||-|+|..+.
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence                            1112356677788887554   467889999999999999997643

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.24  E-value=0.00071  Score=67.21  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            469999999999999999999999999999864

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.23  E-value=0.00016  Score=73.00  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhh--hcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVE--VAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~--~~~~V~l~~r~~~~  240 (454)
                      .+++|+|||+|++|+..|..|++  .+.+|+++++.+.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            45899999999999999999986  68999999998876

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.23  E-value=0.0043  Score=65.88  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .++|+|||||..|+-+|..+.+.|. +|+++.+++
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            4689999999999999999999987 799999864

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.21  E-value=0.0011  Score=66.09  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++|+|||+|++|+-.|..|.+.|.+|++++|++.+
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence            478999999999999999999999999999998876

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.20  E-value=0.00045  Score=63.72  Aligned_cols=91  Identities=15%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh-c-CeEEEecccCCc--Cc-------cchhhhccC---------CCeEEcCceeEEec
Q 044575          206 EVVVVVGNSLSGQDISMELVEV-A-KEVHLSAKSLNI--SE-------GLSKVISKH---------NNLHLHPQIDCLRE  265 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~-~-~~V~l~~r~~~~--~~-------~~~~~l~~~---------~~i~~~~~v~~v~~  265 (454)
                      -.|+|||||.-|+-+|..+.+. + .+|-+++..+..  .|       ++..+-+.+         ...+....|+++.+
T Consensus        40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P  119 (446)
T KOG3851|consen   40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP  119 (446)
T ss_pred             eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence            3699999999999999999875 2 457777765543  11       122111111         12345567888876


Q ss_pred             CC-cEEEeCCCEEeeceEEEccCcccCCcCCC
Q 044575          266 DG-RVTFVDGCWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       266 ~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~  296 (454)
                      +. .|.+.+|++|.+|.+|+|+|.+-++.-+.
T Consensus       120 ~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik  151 (446)
T KOG3851|consen  120 DKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK  151 (446)
T ss_pred             CcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence            64 79999999999999999999998776543

>PRK06834 hypothetical protein; Provisional

Probab=97.19  E-value=0.00098  Score=68.04  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ..|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4799999999999999999999999999998764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.17  E-value=0.0011  Score=66.48  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~  240 (454)
                      +|+|||||..|+=+|..|++.| .+|++++|.+.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            6999999999999999999988 499999998765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.14  E-value=0.0012  Score=65.47  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .+|+|||||++|+=+|..|++.|.+|+++++.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            57999999999999999999999999999998

>PRK09126 hypothetical protein; Provisional

Probab=97.13  E-value=0.0012  Score=65.53  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            3699999999999999999999999999998753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.13  E-value=0.0013  Score=65.16  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|||+|++|.-+|..|++.|.+|+++++.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            389999999999999999999999999998754

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.13  E-value=0.01  Score=57.00  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             EEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCC-CCCcC
Q 044575          120 IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPS-IKGMD  185 (454)
Q Consensus       120 i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~-i~G~~  185 (454)
                      +.-+++|.+++...++         ...++++...+++..++++|.||+|||  -....|. +.|+.
T Consensus       295 l~~~~ev~~~~~~G~g---------~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~fL~~l~  350 (436)
T COG3486         295 LLSLSEVQSVEPAGDG---------RYRLTLRHHETGELETVETDAVILATG--YRRAVPSFLEGLA  350 (436)
T ss_pred             eccccceeeeecCCCc---------eEEEEEeeccCCCceEEEeeEEEEecc--cccCCchhhhhHH
Confidence            5668889998877653         688888877667778899999999999  5555553 34544

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.13  E-value=0.0025  Score=55.96  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++....|+|||+|+||+-.|..|++.+-+|.+++|+-.+
T Consensus        26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~   65 (262)
T COG1635          26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF   65 (262)
T ss_pred             HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence            3444568999999999999999999999999999998766

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.12  E-value=0.0012  Score=68.02  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .|+|||||+.|+++|..+++.|.+|.++++..
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            69999999999999999999999999999873

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.11  E-value=0.0015  Score=65.90  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||+|.+|+-.|..|.+.+.+|+++.++.
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            35789999999999999999999999999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.10  E-value=0.0012  Score=65.22  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~  239 (454)
                      .|+|||+|++|+-+|..|++.| .+|+++++.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            3899999999999999999999 99999998653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.08  E-value=0.00067  Score=69.28  Aligned_cols=79  Identities=22%  Similarity=0.284  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-CccchhhhccC-CCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEGLSKVISKH-NNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~~~~~l~~~-~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      .+++|+|||+|.+|+++|..|.+.|.+|+++++++.. ...+.+.+.+. ..+..+..+         .    ....+|+
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---------~----~~~~~D~   81 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP---------T----LPEDTDL   81 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---------c----ccCCCCE
Confidence            5689999999999999999999999999999876532 11222223222 122222111         1    1245999


Q ss_pred             EEEccCcccCCcCC
Q 044575          282 ILYCTGYSYSFPFL  295 (454)
Q Consensus       282 vI~atG~~~~~~~l  295 (454)
                      ||.++|..|+.|++
T Consensus        82 Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         82 VVTSPGWRPDAPLL   95 (480)
T ss_pred             EEECCCcCCCCHHH
Confidence            99999999998874

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.05  E-value=0.0015  Score=65.18  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~  239 (454)
                      +|+|||||++|+=+|..|++.|  .+|+++++.+.
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            5899999999999999999985  89999998754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.04  E-value=0.00042  Score=69.15  Aligned_cols=37  Identities=19%  Similarity=0.094  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHh-hhcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELV-EVAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~-~~~~~V~l~~r~~~~  240 (454)
                      .+++|+|||+|++|+.+|..|. +.+.+|+++++.+.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            4689999999999999999765 568999999999887

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0038  Score=60.83  Aligned_cols=36  Identities=36%  Similarity=0.534  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+||+|||||.||..||.+.++.|.+.+++-.+-+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld   62 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD   62 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence            468999999999999999999999999988886543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.00078  Score=62.53  Aligned_cols=34  Identities=26%  Similarity=0.595  Sum_probs=31.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++||+|||||.||++|+.+|.+.|.++.||.+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            4799999999999999999999999999999764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.01  E-value=0.0021  Score=63.76  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            3699999999999999999999999999998754

>PRK07045 putative monooxygenase; Reviewed

Probab=97.01  E-value=0.0021  Score=63.72  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=32.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -+|+|||||++|+=+|..|++.|.+|+++++.+.+
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            47999999999999999999999999999987754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.00  E-value=0.0059  Score=67.74  Aligned_cols=96  Identities=19%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+                                           
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------  353 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------  353 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence            4789999999999999999999995 58899875421                                           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                                   ...+.+.+++.++.  ++.++.|..+...+.          .-.|++.... +...++.+|.|+++.
T Consensus       354 -------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~~----------v~~V~l~~~~-g~~~~i~~D~V~va~  407 (985)
T TIGR01372       354 -------------SPEARAEARELGIE--VLTGHVVAATEGGKR----------VSGVAVARNG-GAGQRLEADALAVSG  407 (985)
T ss_pred             -------------hHHHHHHHHHcCCE--EEcCCeEEEEecCCc----------EEEEEEEecC-CceEEEECCEEEEcC
Confidence                         01123344566777  888999988864321          1224443211 223478999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       408 G--~~Pnt  413 (985)
T TIGR01372       408 G--WTPVV  413 (985)
T ss_pred             C--cCchh
Confidence            9  77765

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06184 hypothetical protein; Provisional

Probab=97.00  E-value=0.0019  Score=66.36  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            46999999999999999999999999999987654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.99  E-value=0.0018  Score=64.01  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|||+|++|.=+|..|++.|.+|++++|.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            389999999999999999999999999999863

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.99  E-value=0.001  Score=64.78  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .|+|||+|.+|+-+|.+|++.|.+|+++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.99  E-value=0.001  Score=61.84  Aligned_cols=43  Identities=49%  Similarity=0.918  Sum_probs=37.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--CCCcc--cccC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--DVGGQ--WLYD   54 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--~~GG~--w~~~   54 (454)
                      ..||+|||||.|||.||.+|+..|.+|+|+|++.  .+||+  |++.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfG   51 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFG   51 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecc
Confidence            5799999999999999999999999999999865  46775  5544

>PRK08013 oxidoreductase; Provisional

Probab=96.97  E-value=0.0021  Score=63.99  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .+|+|||+|++|.=+|..|++.|.+|+++++.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4699999999999999999999999999998764

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.96  E-value=0.0026  Score=60.82  Aligned_cols=97  Identities=31%  Similarity=0.365  Sum_probs=67.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc----CCcEE-EEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE----GHRVV-VLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFP   85 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~----g~~v~-vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (454)
                      +...|.|||+|+-|-..|..|.++    |.+|. ||+..-..                                      
T Consensus       346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm--------------------------------------  387 (659)
T KOG1346|consen  346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM--------------------------------------  387 (659)
T ss_pred             hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh--------------------------------------
Confidence            357899999999999999999875    44443 55543211                                      


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH----HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE
Q 044575           86 FVLKKGRDVRRFPGHKELWLYLKD----FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE  161 (454)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~yl~~----~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (454)
                                    .+-+-+||.+    -.++-|+.  ++-|..|.++.+...          ...+.++++.     ++
T Consensus       388 --------------~kiLPeyls~wt~ekir~~GV~--V~pna~v~sv~~~~~----------nl~lkL~dG~-----~l  436 (659)
T KOG1346|consen  388 --------------EKILPEYLSQWTIEKIRKGGVD--VRPNAKVESVRKCCK----------NLVLKLSDGS-----EL  436 (659)
T ss_pred             --------------hhhhHHHHHHHHHHHHHhcCce--eccchhhhhhhhhcc----------ceEEEecCCC-----ee
Confidence                          0112233332    33445766  788889988876643          6678888876     88


Q ss_pred             EeCEEEEccCCCCCCCC
Q 044575          162 VFDAVVVATGHYSYPRL  178 (454)
Q Consensus       162 ~~d~vViAtG~~~~p~~  178 (454)
                      +.|.||+|+|  ..|+.
T Consensus       437 ~tD~vVvavG--~ePN~  451 (659)
T KOG1346|consen  437 RTDLVVVAVG--EEPNS  451 (659)
T ss_pred             eeeeEEEEec--CCCch
Confidence            9999999999  78875

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.96  E-value=0.001  Score=72.55  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+++|+|||||+.|+..|..|++.|.+|+++++.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            4579999999999999999999999999999987654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=96.96  E-value=0.0022  Score=60.65  Aligned_cols=33  Identities=30%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            489999999999999999999999999998864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02697 lycopene epsilon cyclase

Probab=96.95  E-value=0.0022  Score=65.67  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+-+|..+++.|.+|.++.+...+
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            47999999999999999999999999999875433

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.94  E-value=0.0015  Score=64.51  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|||||.+|+|+|..|++.|.+|+++++++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999997665

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.011  Score=56.01  Aligned_cols=99  Identities=27%  Similarity=0.250  Sum_probs=69.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||-+++-.|..|.+.+.+|+++=|++.+                                           
T Consensus       142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-------------------------------------------  178 (305)
T COG0492         142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-------------------------------------------  178 (305)
T ss_pred             cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-------------------------------------------
Confidence            3569999999999999999999999999999987643                                           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ...+.+.+-+++..   ++.  +.+++.+..+.-.+           .-.|++.+.. ++...+.+|.|+++.
T Consensus       179 -------ra~~~~~~~l~~~~---~i~--~~~~~~i~ei~G~~-----------v~~v~l~~~~-~~~~~~~~~gvf~~i  234 (305)
T COG0492         179 -------RAEEILVERLKKNV---KIE--VLTNTVVKEILGDD-----------VEGVVLKNVK-GEEKELPVDGVFIAI  234 (305)
T ss_pred             -------CcCHHHHHHHHhcC---CeE--EEeCCceeEEecCc-----------cceEEEEecC-CceEEEEeceEEEec
Confidence                   11123333332211   444  78899998887543           1235555543 445588999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       235 G--~~p~~  240 (305)
T COG0492         235 G--HLPNT  240 (305)
T ss_pred             C--CCCch
Confidence            9  66664

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=96.92  E-value=0.0047  Score=57.31  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .-.|+|||+|++|+-+|..+++.|.+|.++++...+
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~   60 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF   60 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            357999999999999999999999999999987654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.92  E-value=0.0011  Score=71.15  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ..+|+|+|||+|+.|+.+|..|+..|.+|+++++.+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            468999999999999999999999999999999753

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.91  E-value=0.0025  Score=63.63  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            69999999999999999999999999999875

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.85  E-value=0.0031  Score=62.83  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            68999999999999999999999999999988754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=96.85  E-value=0.0035  Score=62.09  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            3699999999999999999999999999998755

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.85  E-value=0.018  Score=60.93  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4789999999999999999999985 799999864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.84  E-value=0.0028  Score=63.41  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .+|+|||||+.|+=+|..|++.|.+|+++++.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            5799999999999999999999999999998764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.84  E-value=0.0033  Score=62.21  Aligned_cols=32  Identities=16%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      +|+|||||+.|.-+|..|++.|.+|+++++.+
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            69999999999999999999999999999764

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.84  E-value=0.002  Score=62.65  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||||++|+=+|..|++.|.+|++++|.+..
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            5999999999999999999999999999998765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07190 hypothetical protein; Provisional

Probab=96.83  E-value=0.0031  Score=64.39  Aligned_cols=35  Identities=17%  Similarity=0.019  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+=+|..|++.|.+|.++++.+..
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            46999999999999999999999999999987653

>PRK08244 hypothetical protein; Provisional

Probab=96.83  E-value=0.003  Score=64.83  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            36999999999999999999999999999987654

>PRK13984 putative oxidoreductase; Provisional

Probab=96.82  E-value=0.042  Score=57.89  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=25.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC------cEEEEe
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH------RVVVLE   42 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~------~v~vie   42 (454)
                      .++|+|||||..|+-+|..|.+.+.      +|+++.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            4789999999999999999988753      667664

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.79  E-value=0.0014  Score=63.47  Aligned_cols=49  Identities=35%  Similarity=0.506  Sum_probs=42.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD   58 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~   58 (454)
                      ...+|++|||+|..||.||..|++.|.+|+++|++..+||.-.++..++
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivp   60 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVP   60 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhcc
Confidence            4469999999999999999999999999999999988998776655443

>PRK09897 hypothetical protein; Provisional

Probab=96.79  E-value=0.0035  Score=64.19  Aligned_cols=35  Identities=11%  Similarity=0.222  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcC--eEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAK--EVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~--~V~l~~r~~~~  240 (454)
                      ++|+|||+|++|+-+|..|.+.+.  +|++++++..+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            589999999999999999987654  79999986654

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=96.78  E-value=0.0034  Score=62.60  Aligned_cols=32  Identities=16%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .+|+|||||++|+=+|..|++.|.+|+++++.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47999999999999999999999999999985

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=96.78  E-value=0.003  Score=63.44  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      -.|+|||+|++|.=+|..|++.|.+|.+++|.+.
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~   39 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS   39 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence            3699999999999999999999999999998654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.71  E-value=0.0019  Score=63.58  Aligned_cols=33  Identities=27%  Similarity=0.540  Sum_probs=31.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +||+|||+|++|+++|..+.+.|.+|+|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999865

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=96.71  E-value=0.0048  Score=61.22  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            479999999999999999999999999999864

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.70  E-value=0.0025  Score=57.29  Aligned_cols=84  Identities=19%  Similarity=0.328  Sum_probs=55.0

Q ss_pred             EEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc-----CccchhhhccCC----C---------eEEcCceeEEe-cC
Q 044575          208 VVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI-----SEGLSKVISKHN----N---------LHLHPQIDCLR-ED  266 (454)
Q Consensus       208 vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~-----~~~~~~~l~~~~----~---------i~~~~~v~~v~-~~  266 (454)
                      .+|||||..|+-+|..|+.+  ..+|.++..++-.     ...+.+.+.+..    +         -.++. |..+. +.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~s~e   80 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWDSSE   80 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhcccc
Confidence            68999999999999999976  4567777766543     111222221110    0         00111 22232 22


Q ss_pred             CcEEEeCCCEEeeceEEEccCcccCC
Q 044575          267 GRVTFVDGCWVTADTILYCTGYSYSF  292 (454)
Q Consensus       267 ~~v~~~dG~~i~~D~vI~atG~~~~~  292 (454)
                      ..+++.+|+++.++-+++|||++|-+
T Consensus        81 hci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   81 HCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             ceEEecCCceeeEEEEEEecCCCcce
Confidence            36899999999999999999999864

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0048  Score=57.56  Aligned_cols=106  Identities=25%  Similarity=0.269  Sum_probs=79.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      -+-+|||||..+|.||-.|+-.|++|++.=|+=-+                                             
T Consensus       199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L---------------------------------------------  233 (503)
T KOG4716|consen  199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL---------------------------------------------  233 (503)
T ss_pred             CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec---------------------------------------------
Confidence            47899999999999999999999999999874211                                             


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                        ..|  .+++.+.+.+..+..|+.  +.-.+...+|+..+++         +..|...+..+++.-+..||.|+.|.| 
T Consensus       234 --rGF--Dqdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g---------~l~v~~k~t~t~~~~~~~ydTVl~AiG-  297 (503)
T KOG4716|consen  234 --RGF--DQDMAELVAEHMEERGIK--FLRKTVPERVEQIDDG---------KLRVFYKNTNTGEEGEEEYDTVLWAIG-  297 (503)
T ss_pred             --ccc--cHHHHHHHHHHHHHhCCc--eeecccceeeeeccCC---------cEEEEeecccccccccchhhhhhhhhc-
Confidence              011  167888888888888887  5445566778877665         666776665555555678999999999 


Q ss_pred             CCCCCCCC
Q 044575          173 YSYPRLPS  180 (454)
Q Consensus       173 ~~~p~~p~  180 (454)
                       ..+.+-+
T Consensus       298 -R~~~~~~  304 (503)
T KOG4716|consen  298 -RKALTDD  304 (503)
T ss_pred             -cccchhh
Confidence             5555443

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.64  E-value=0.022  Score=63.09  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..++|+|||||..|+-+|..+.+.|. .|+++.++.
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~  605 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS  605 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            35799999999999999999999998 477887653

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.64  E-value=0.0018  Score=66.85  Aligned_cols=37  Identities=30%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |..++|+||||+|.+|..+|..|++.|.+|+|+|+..
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            4557999999999999999999998899999999974

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.60  E-value=0.00059  Score=59.19  Aligned_cols=41  Identities=37%  Similarity=0.718  Sum_probs=35.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc-ccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG-QWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG-~w~   52 (454)
                      ..||+|||||.+||+||..+.++  +.+|.|||.+-.+|| .|.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL  119 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL  119 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence            36999999999999999999865  679999999888765 575

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.0043  Score=62.85  Aligned_cols=34  Identities=41%  Similarity=0.664  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||+|..|+++|+.|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4789999999999999999999999999999853

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.59  E-value=0.01  Score=55.75  Aligned_cols=104  Identities=23%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +.++++|+|||..++..|--++..|.++.++=|.+.+-                                          
T Consensus       188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL------------------------------------------  225 (478)
T KOG0405|consen  188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL------------------------------------------  225 (478)
T ss_pred             cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh------------------------------------------
Confidence            46899999999999999999999999999998876320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                          ..|  .+.+.+.+.+-.+.-++.  ++.++.++.+.+..++         ...+....+.     ....|.|+-|+
T Consensus       226 ----R~F--D~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g---------~~~~i~~~~~-----i~~vd~llwAi  283 (478)
T KOG0405|consen  226 ----RGF--DEMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDG---------LELVITSHGT-----IEDVDTLLWAI  283 (478)
T ss_pred             ----cch--hHHHHHHHHHHhhhccee--ecccccceeeeecCCC---------ceEEEEeccc-----cccccEEEEEe
Confidence                000  134555556656666766  8888999999887664         4455554442     34599999999


Q ss_pred             CCCCCCCCCC
Q 044575          171 GHYSYPRLPS  180 (454)
Q Consensus       171 G~~~~p~~p~  180 (454)
                      |  ..|+.-.
T Consensus       284 G--R~Pntk~  291 (478)
T KOG0405|consen  284 G--RKPNTKG  291 (478)
T ss_pred             c--CCCCccc
Confidence            9  7777653

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.57  E-value=0.0059  Score=60.20  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      +|+|||||++|.-+|..|++.|.+|+++++.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            5999999999999999999999999999975

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.56  E-value=0.0055  Score=63.55  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|++|+-+|..|++.|.+|++++|.+..
T Consensus        11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~   45 (538)
T PRK06183         11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL   45 (538)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            57999999999999999999999999999988643

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.55  E-value=0.0063  Score=60.39  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh---cCeEEEeccc
Q 044575          206 EVVVVVGNSLSGQDISMELVEV---AKEVHLSAKS  237 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~---~~~V~l~~r~  237 (454)
                      -+|+|||+|++|.-+|..|++.   |.+|++++|.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4699999999999999999998   9999999994

>PLN02661 Putative thiazole synthesis

Probab=96.55  E-value=0.0085  Score=57.52  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             CCCCCCCCCCeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCc
Q 044575          197 YRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI  240 (454)
Q Consensus       197 ~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~  240 (454)
                      +.+..+...-.|+|||+|.+|+=.|..+++. +.+|+++++....
T Consensus        84 ~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         84 MTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             hhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            3334444556899999999999999999975 7899999987643

>TIGR01810 betA choline dehydrogenase

Probab=96.53  E-value=0.0021  Score=66.53  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=30.6

Q ss_pred             cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHD   46 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~   46 (454)
                      |+||||||.||+.+|.+|++.+ .+|+|+|+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            7999999999999999999988 69999999763

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.50  E-value=0.0072  Score=62.23  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .|+|||+|.+|+++|..+++.|.+|.++.+.
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~   32 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN   32 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence            4899999999999999999999999999875

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.50  E-value=0.079  Score=55.33  Aligned_cols=34  Identities=35%  Similarity=0.557  Sum_probs=29.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~   45 (454)
                      .++|+|||+|..|+.+|..+.+.+ .+|+++.+.+
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            578999999999999999998888 5799998864

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.0056  Score=59.72  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .|+|||||..|+|.|.+.++.|.+.+|+..+
T Consensus        30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            6999999999999999999999998887654

>PLN02785 Protein HOTHEAD

Probab=96.47  E-value=0.0032  Score=65.51  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+|++|||||.||+.+|.+|.+ +.+|+|+|+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            36999999999999999999999 689999999763

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=0.0036  Score=62.28  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||||..|+|.|.+.++.|.++.|+.-..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            369999999999999999999999988876543

>PRK11445 putative oxidoreductase; Provisional

Probab=96.45  E-value=0.0084  Score=58.57  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=29.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .|+|||+|++|.-+|..|++. .+|++++|.+
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~   33 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH   33 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence            599999999999999999998 9999999876

>PRK10015 oxidoreductase; Provisional

Probab=96.43  E-value=0.007  Score=60.80  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|++|.=+|..|++.|.+|.+++|.+.+
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~   40 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA   40 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            6999999999999999999999999999987543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.40  E-value=0.16  Score=51.83  Aligned_cols=36  Identities=28%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~   46 (454)
                      ..++|+|||||..|+-+|..+.+.|. +|+++|..+.
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            35789999999999999998888875 7999998653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=96.36  E-value=0.011  Score=58.90  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|.-+|..|++.|.+|.++++...+
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~   38 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP   38 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            36999999999999999999999999999997765

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.36  E-value=0.0052  Score=55.76  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||+|..|+-.|..|...|.+|++++++...
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv   36 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV   36 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence            6999999999999999999999999999987654

>PRK07538 hypothetical protein; Provisional

Probab=96.35  E-value=0.0091  Score=59.73  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||||+.|+=+|..|++.|.+|+++++.+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            6999999999999999999999999999987653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.27  E-value=0.0036  Score=62.87  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=28.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|||||||++|+-.|..+++.|.+|.|+++.+.+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence            4899999999999999999999999999998876

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.24  E-value=0.015  Score=57.82  Aligned_cols=34  Identities=12%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            4799999999999999999999999999998864

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.23  E-value=0.0096  Score=50.68  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      +..|++|+|||||..|...+..|.+.+.+|+++.  +...+.+.+    ...+      . ....   .+..+..-.+|+
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~----l~~i------~-~~~~---~~~~~dl~~a~l   73 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKE----LPYI------T-WKQK---TFSNDDIKDAHL   73 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHh----ccCc------E-EEec---ccChhcCCCceE
Confidence            3478999999999999999999999999999994  333333322    1111      1 1111   122222334999


Q ss_pred             EEEccCcc
Q 044575          282 ILYCTGYS  289 (454)
Q Consensus       282 vI~atG~~  289 (454)
                      ||.||+-.
T Consensus        74 ViaaT~d~   81 (157)
T PRK06719         74 IYAATNQH   81 (157)
T ss_pred             EEECCCCH
Confidence            99999865

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.22  E-value=0.011  Score=61.52  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            57999999999999999999999999999988643

>PRK06185 hypothetical protein; Provisional

Probab=96.21  E-value=0.012  Score=58.84  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            5799999999999999999999999999998753

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.20  E-value=0.015  Score=57.67  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .|+|||+|++|.=+|..|++.|.+|.++++.
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            5899999999999999999999999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.15  E-value=0.0059  Score=43.87  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=28.9

Q ss_pred             EEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          210 VVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       210 VVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      |||+|.+|+-.|..|++.+.+|+++++.+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999988763

...

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.15  E-value=0.013  Score=59.24  Aligned_cols=33  Identities=24%  Similarity=0.207  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~  239 (454)
                      +|+|||||..|.-.|..|++.+   .+|+++++...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence            5999999999999999999988   78999998754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR00275 flavoprotein, HI0933 family

Probab=96.14  E-value=0.01  Score=58.99  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=29.0

Q ss_pred             EEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          209 VVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       209 vVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|||+|++|+=+|..+++.|.+|+++++.+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence            58999999999999999999999999987654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06996 hypothetical protein; Provisional

Probab=96.10  E-value=0.014  Score=58.04  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=29.4

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc----CeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA----KEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~----~~V~l~~r~~  238 (454)
                      ..|+|||||+.|.-+|..|++.|    .+|+++++.+
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            47999999999999999999886    4799999864

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.06  E-value=0.0047  Score=57.12  Aligned_cols=38  Identities=34%  Similarity=0.580  Sum_probs=33.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG   48 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G   48 (454)
                      .++|+||||||..|++.|++|.-+  +.+|.|+|+...++
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            469999999999999999999765  88999999987664

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.98  E-value=0.0091  Score=59.29  Aligned_cols=44  Identities=25%  Similarity=0.590  Sum_probs=34.5

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      |.+.+||+|+|.|..-...|..|++.|.+|+.+|+++..||.|.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a   44 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA   44 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence            45679999999999999999999999999999999999999986

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.97  E-value=0.012  Score=57.72  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++++|||||.+|+..|.+|++.|-+|+|+++.+.+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi  159 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI  159 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            479999999999999999999999999999999887

>PRK06126 hypothetical protein; Provisional

Probab=95.92  E-value=0.02  Score=59.57  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||||++|+-+|..|++.|.+|++++|.+..
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~   42 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT   42 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            57999999999999999999999999999987643

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.92  E-value=0.011  Score=63.25  Aligned_cols=40  Identities=15%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..-.|++|.|||+|++|+-.|..|.+.|..|++.+|+++.
T Consensus      1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            3346899999999999999999999999999999999987

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.88  E-value=0.024  Score=55.98  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~~  240 (454)
                      ++|+|||+|+||+.+|.+|.+..   ..|.++++.+.+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            57999999999999999999752   238999888776

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.87  E-value=0.0095  Score=50.83  Aligned_cols=32  Identities=34%  Similarity=0.542  Sum_probs=30.3

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|||||..|.++|..|+++|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.83  E-value=0.022  Score=60.63  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||||.+|+-+|..|++.|.+|+++++..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999864

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=95.82  E-value=0.029  Score=55.48  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~  240 (454)
                      -.|+|||||.+|+-+|.+|++..  .+|+++++...+
T Consensus         4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            36999999999999999999998  899999997766

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.81  E-value=0.023  Score=59.64  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      +..+|+|||||..|+=+|..|++.|.+|++++|.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34689999999999999999999999999999864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.79  E-value=0.0086  Score=47.04  Aligned_cols=34  Identities=35%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +.++|+|||||..|..-+..|.+.|.+|+++.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            4578999999999999999999999999999986

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=95.78  E-value=0.026  Score=56.96  Aligned_cols=31  Identities=26%  Similarity=0.247  Sum_probs=28.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhh----hcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVE----VAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~----~~~~V~l~~r~  237 (454)
                      .|+|||||++|+-+|..|++    .|.+|+++++.
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            48999999999999999998    79999999983

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.21  Score=47.12  Aligned_cols=35  Identities=40%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.+||+|||||-+|+.||..|+---..|+++|-.+
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence            46899999999999999999987666899999754

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.77  E-value=0.0046  Score=56.46  Aligned_cols=42  Identities=24%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             hccCCCcEEEECcChHHHHHHHHHHHcC------CcEEEEeeCCCCCc
Q 044575            8 QCAQSKNVCVIGAGPSGLVAARELRKEG------HRVVVLEQNHDVGG   49 (454)
Q Consensus         8 ~~~~~~~VvIIGaG~aGl~aA~~l~~~g------~~v~vie~~~~~GG   49 (454)
                      +|...++|+|+|||..|+++|..|.+++      ..|++||...-.||
T Consensus         6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            3455689999999999999999999986      78999998765554

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.66  E-value=0.039  Score=54.73  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .+|+|||+|+.|+=+|..|++.|.+|+++++.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.60  E-value=0.02  Score=51.11  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=31.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||||..|...++.|.+.|.+|+|++.+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35799999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.56  E-value=0.023  Score=48.42  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEee
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ   43 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~   43 (454)
                      +.++|+|||||..|..-|+.|.+.|.+|+||++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            568999999999999999999999999999964

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.52  E-value=0.011  Score=46.48  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++++|+|||+|..|..-+..|.+.|.+|+++.+..
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            468999999999999999999999999999998764

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=95.44  E-value=0.038  Score=53.36  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||||..|+-.|..|++.|-+|.+.+++..+
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            57999999999999999999999999999886655

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.35  E-value=0.015  Score=57.44  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|+|||||..|+++|..|++.|.+|+++++++..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999965443

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.33  E-value=0.02  Score=58.44  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=33.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDV   47 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~   47 (454)
                      ...||.+|||||.||...|.+|.+. .++|+|+|+....
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4579999999999999999999987 6899999997654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.32  E-value=0.021  Score=51.81  Aligned_cols=33  Identities=42%  Similarity=0.769  Sum_probs=31.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++++|||+|.-|.+.|+.|.+.|++|+++|+.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            369999999999999999999999999999976

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.30  E-value=0.019  Score=50.39  Aligned_cols=32  Identities=34%  Similarity=0.598  Sum_probs=27.0

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|||.|..|+.+|..|++.|++|+.+|.++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            69999999999999999999999999999865

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.23  E-value=0.018  Score=57.45  Aligned_cols=31  Identities=45%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           22 PSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        22 ~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      .|||+||..|++.|++|+|+|+++++||...
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~   31 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR   31 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence            4899999999999999999999999999866

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=95.21  E-value=0.34  Score=48.35  Aligned_cols=92  Identities=20%  Similarity=0.042  Sum_probs=62.3

Q ss_pred             EEECcChHHHHHH-HHHH----HcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           16 CVIGAGPSGLVAA-RELR----KEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        16 vIIGaG~aGl~aA-~~l~----~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +|++-|.-|+..+ ..+.    +.|.+|++++..+..                                           
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-------------------------------------------  255 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-------------------------------------------  255 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-------------------------------------------
Confidence            5677788888777 3332    359999999875421                                           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             .+..++.+.+.+..++.++.  +..+++|.+++..+.          .-.+....  ++....+.+|.||+||
T Consensus       256 -------lpG~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~~----------~V~~v~~~--~g~~~~i~AD~VVLAt  314 (422)
T PRK05329        256 -------VPGLRLQNALRRAFERLGGR--IMPGDEVLGAEFEGG----------RVTAVWTR--NHGDIPLRARHFVLAT  314 (422)
T ss_pred             -------CchHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCC----------EEEEEEee--CCceEEEECCEEEEeC
Confidence                   12246777777777777877  899999999986642          22222221  1224468999999999


Q ss_pred             C
Q 044575          171 G  171 (454)
Q Consensus       171 G  171 (454)
                      |
T Consensus       315 G  315 (422)
T PRK05329        315 G  315 (422)
T ss_pred             C
Confidence            9

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.20  E-value=0.021  Score=57.90  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-CccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      .++|+|+|+|+|.+|..+|..|++.|.+|+++.+.... .....+.+.+.       .+.-+..+.    .+...-.+|+
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-------~~~~~~~~~----~~~~~~~~d~   71 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-------GIELVLGEY----PEEFLEGVDL   71 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-------CCEEEeCCc----chhHhhcCCE
Confidence            35799999999999999999999999999999886421 11111111111       111111110    0111124899


Q ss_pred             EEEccCcccCCcCC
Q 044575          282 ILYCTGYSYSFPFL  295 (454)
Q Consensus       282 vI~atG~~~~~~~l  295 (454)
                      ||.++|..++.|.+
T Consensus        72 vv~~~g~~~~~~~~   85 (450)
T PRK14106         72 VVVSPGVPLDSPPV   85 (450)
T ss_pred             EEECCCCCCCCHHH
Confidence            99999998887754

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.022  Score=57.81  Aligned_cols=33  Identities=45%  Similarity=0.648  Sum_probs=30.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +|+|||+|++|+++|+.|.+.|++|+++|++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            599999999999999999999999999998753

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.15  E-value=0.13  Score=51.92  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      -.|+|||||+.|.=+|..|++.|.+|.++++...
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            4799999999999999999999999999998753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.07  E-value=0.043  Score=45.42  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=31.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~   45 (454)
                      +.++++|||+|-+|-+++.+|.+.|.+ |+|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            468999999999999999999999986 99999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.02  E-value=0.036  Score=49.35  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=31.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +.++|+|||||-.|...|+.|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4689999999999999999999999999999864

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.97  E-value=0.03  Score=49.97  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTI  282 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v  282 (454)
                      +.+++|+|||||..|..=|..|.+.|.+|+++....  .+.+..+..+..       +..+. +.   +.......++.|
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~~~~~~~-------i~~~~-~~---~~~~~~~~~~lv   76 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKALIEEGK-------IKWIE-RE---FDAEDLDDAFLV   76 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHHHHHhcC-------cchhh-cc---cChhhhcCceEE
Confidence            468999999999999999999999999999997665  555555443322       22232 11   111222339999


Q ss_pred             EEccCcc
Q 044575          283 LYCTGYS  289 (454)
Q Consensus       283 I~atG~~  289 (454)
                      |.||+-.
T Consensus        77 iaAt~d~   83 (210)
T COG1648          77 IAATDDE   83 (210)
T ss_pred             EEeCCCH
Confidence            9999864

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.93  E-value=0.11  Score=53.87  Aligned_cols=88  Identities=22%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCCcC---ccchhhhc------------------cCCCeEEcCcee
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLNIS---EGLSKVIS------------------KHNNLHLHPQID  261 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~~~---~~~~~~l~------------------~~~~i~~~~~v~  261 (454)
                      .+++|||.|..|.-...++.+..   -.||++...++..   ..+++.+.                  ..+.++.+.++.
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~   83 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI   83 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence            67999999999999999988843   3588877665541   11111111                  123577788888


Q ss_pred             EEecCC-cEEEeCCCEEeeceEEEccCcccCCc
Q 044575          262 CLREDG-RVTFVDGCWVTADTILYCTGYSYSFP  293 (454)
Q Consensus       262 ~v~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~  293 (454)
                      .+..+. .|+.++|.++.+|-+|+|||..|..+
T Consensus        84 ~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~  116 (793)
T COG1251          84 QIDRANKVVTTDAGRTVSYDKLIIATGSYPFIL  116 (793)
T ss_pred             EeccCcceEEccCCcEeecceeEEecCcccccc
Confidence            887665 56666788899999999999986644

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.82  E-value=0.04  Score=48.15  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=28.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|||||.-|...|..++..|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999865

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=94.80  E-value=0.032  Score=53.74  Aligned_cols=33  Identities=30%  Similarity=0.634  Sum_probs=29.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQN   44 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~   44 (454)
                      .+||+|+||||.|++.|..|...    ..+|.++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            68999999999999999999864    4699999987

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.72  E-value=0.039  Score=52.32  Aligned_cols=34  Identities=32%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3679999999999999999999999999999865

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.72  E-value=0.027  Score=56.54  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=35.4

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ...+++|+|||+|+-|...|..|++.|..|++..+.+..
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            345699999999999999999999999999999988765

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=94.70  E-value=0.082  Score=55.86  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+-+|..|++. |.+|.++++.+..
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            4799999999999999999995 9999999987654

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=94.65  E-value=0.18  Score=47.54  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ....|+|||+|.-|+-.|.+|++.+.++.++++-+.+
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~p   42 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLP   42 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCC
Confidence            3467999999999999999999999999998876654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.64  E-value=0.04  Score=49.18  Aligned_cols=79  Identities=16%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTI  282 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v  282 (454)
                      +.+++|+|||||.+|.--+..|.+.|.+|+++....  .+.+.++.. ..      .|+-+..+    +..+..-.+|+|
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~--~~~l~~l~~-~~------~i~~~~~~----~~~~dl~~~~lV   73 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL--ESELTLLAE-QG------GITWLARC----FDADILEGAFLV   73 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC--CHHHHHHHH-cC------CEEEEeCC----CCHHHhCCcEEE
Confidence            468999999999999999999999999999997543  344433322 11      22222111    111112239999


Q ss_pred             EEccCcc-cCCcC
Q 044575          283 LYCTGYS-YSFPF  294 (454)
Q Consensus       283 I~atG~~-~~~~~  294 (454)
                      |.|||-. .|.+.
T Consensus        74 i~at~d~~ln~~i   86 (205)
T TIGR01470        74 IAATDDEELNRRV   86 (205)
T ss_pred             EECCCCHHHHHHH
Confidence            9999997 55444

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.64  E-value=0.1  Score=49.03  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEeccc
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .++||+|+|||.|. .|.-+|..|.+.+..|++++|.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            56899999999998 9999999999998899999873

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.55  E-value=0.041  Score=51.46  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..|-|||||.||-.||.++++.|..|.++|-++.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            4599999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.55  E-value=0.056  Score=46.63  Aligned_cols=35  Identities=34%  Similarity=0.382  Sum_probs=30.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|+|+|.+|..||..|...|.+++++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35789999999999999999999999999999754

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.50  E-value=0.056  Score=55.01  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      +.++|+|||+|.+|+-.|..|.+.|-+|++++.++++.-
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            457899999999999999999999999999999887643

>PRK04148 hypothetical protein; Provisional

Probab=94.48  E-value=0.042  Score=44.98  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=30.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+|++||.| .|...|..|.+.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3679999999 899899999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	454
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		2e-31
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		2e-31
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		3e-31
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		3e-31
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		3e-31
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		4e-31
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		1e-29
1vqw_A	457	Crystal Structure Of A Protein With Similarity To F		3e-26
2gv8_A	447	Crystal Structure Of Flavin-Containing Monooxygenas		4e-26
3uov_A	545	Crystal Structure Of Otemo (Fad Bound Form 1) Lengt		4e-10
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		2e-09
2ylx_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		8e-08
2ylz_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		1e-07
2ylw_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		1e-07
1w4x_A	542	Phenylacetone Monooxygenase, A Baeyer-villiger Mono		1e-07
4ap1_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		6e-06
4aos_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		6e-06
4ap3_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		6e-06
3rha_A	482	The Crystal Structure Of Oxidoreductase From Arthro		8e-06
3gf4_A	390	Structure Of Udp-Galactopyranose Mutase Bound To Ud		8e-05
2bi7_A	384	Udp-Galactopyranose Mutase From Klebsiella Pneumoni		8e-05
1wam_A	384	Structure Of Udp-Galactopyranose Mutase From Klebsi		8e-05
2yg3_A	453	Structure-Based Redesign Of Cofactor Binding In Put		1e-04
2yg5_A	453	Structure-Based Redesign Of Cofactor Binding In Put		1e-04
2yg7_A	453	Structure-Based Redesign Of Cofactor Binding In Put		1e-04
4e0v_A	497	Structure Of L-Amino Acid Oxidase From The B. Jarar		2e-04
3kve_A	486	Structure Of Native L-Amino Acid Oxidase From Viper		4e-04
2jae_A	489	The Structure Of L-Amino Acid Oxidase From Rhodococ		5e-04
1reo_A	486	L-Amino Acid Oxidase From Agkistrodon Halys Pallas		8e-04
1ps9_A	671	The Crystal Structure And Reaction Mechanism Of E.		9e-04

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 172/367 (46%), Gaps = 32/367 (8%)
Query: 10  AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
           + +  + ++GAGPSG+       +A+E   E   +V  E+  D GGQW Y   T   E  
Sbjct: 5   SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62  --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
             VHSS+Y  L  + P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ 
Sbjct: 65  EPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
           IRFNT V +V            D                           TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
             +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +  AK++    ++ 
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
            +     +   +  NL        +R D     F DG     D I+ CTGY + FPFL+ 
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
             + +V ++R+ P  LY+        P   ++G+  +   F  F++QA +   ++ G+  
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
           LPS ++M
Sbjct: 347 LPSKEEM 353

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 10  AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
           + +  + ++GAGPSG+       +A+E   E   +V  E+  D GGQW Y   T   E  
Sbjct: 5   SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62  --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
             VHSS+Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ 
Sbjct: 65  EPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
           IRFNT V +V            D                           TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
             +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +  AK++    ++ 
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
            +     +   +  NL        +R D     F DG     D I+ CTGY + FPFL+ 
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
             + +V ++R+ P  LY+        P   ++G+  +   F  F++QA +   ++ G+  
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
           LPS ++M
Sbjct: 347 LPSKEEM 353

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 10  AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
           + +  + ++GAGPSG+       +A+E   E   +V  E+  D GGQW Y   T   E  
Sbjct: 5   SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62  --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
             VHSS+Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ 
Sbjct: 65  EPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
           IRFNT V +V            D                           TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
             +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +  AK++    ++ 
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
            +     +   +  NL        +R D     F DG     D I+ CTGY + FPFL+ 
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
             + +V ++R+ P  LY+        P   ++G+  +   F  F++QA +   ++ G+  
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
           LPS ++M
Sbjct: 347 LPSKEEM 353

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 32/365 (8%)
Query: 12  SKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
           +  + ++GAGPSG+       +A+E   E   +V  E+  D GGQW Y   T   E    
Sbjct: 2   ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSS+Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ IR
Sbjct: 62  VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121
Query: 122 FNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSI 181
           FNT V +V            D                           TGH+S P +P  
Sbjct: 122 FNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI 240
           +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +  AK++    ++  +
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM 233
Query: 241 SEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
                +   +  NL        +R D     F DG     D I+ CTGY + FPFL+   
Sbjct: 234 GYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN-DD 284
Query: 300 IVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLP 357
           + +V ++R+ P  LY+        P   ++G+  +   F  F++QA +   ++ G+  LP
Sbjct: 285 LRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLP 343
Query: 358 SWDQM 362
           S ++M
Sbjct: 344 SKEEM 348

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 10  AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
           + +  + ++GAGPSG+       +A+E   E   +V  E+  D GGQW Y   T   E  
Sbjct: 5   SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62  --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
             VHSS+Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ 
Sbjct: 65  EPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
           IRFNT V +V            D                           TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
             +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +  AK++    ++ 
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
            +     +   +  NL        +R D     F DG     D I+ CTGY + FPFL+ 
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
             + +V ++R+ P  LY+        P   ++G+  +   F  F++QA +   ++ G+  
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
           LPS ++M
Sbjct: 347 LPSKEEM 353

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 32/365 (8%)
Query: 12  SKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
           +  + ++GAGPSG+       +A+E   E   +V  E+  D GGQW Y   T   E    
Sbjct: 2   ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSS+Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ IR
Sbjct: 62  VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121
Query: 122 FNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSI 181
           FNT V +V            D                           TGH+S P +P  
Sbjct: 122 FNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI 240
           +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +  AK++    ++  +
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAKKLISCYRTAPM 233
Query: 241 SEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
                +   +  NL        +R D     F DG     D I+ CTGY + FPFL+   
Sbjct: 234 GYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN-DD 284
Query: 300 IVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLP 357
           + +V ++R+ P  LY+        P   ++G+  +   F  F++QA +   ++ G+  LP
Sbjct: 285 LRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLP 343
Query: 358 SWDQM 362
           S ++M
Sbjct: 344 SKEEM 348

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 30/360 (8%)
Query: 12  SKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
           +  + ++GAGPSG        +A+E   E   +V  E+  D GGQW Y   T   E    
Sbjct: 2   ATRIAILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSS Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ IR
Sbjct: 62  VHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121
Query: 122 FNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSI 181
           FNT V +V            D                           TGH+S P +P  
Sbjct: 122 FNTAVRHVEF--------NEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +       + K ++  
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYG-----AKKLISCY 228
Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDTKGI 300
                      N    P +  +R D     F DG     D I+ CTGY + FPFL+   +
Sbjct: 229 RTAPXGYKWPENWDERPNL--VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN-DDL 285
Query: 301 VVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPS 358
            +V ++R+ P  LY+        P   ++G   +   F  F++QA +   ++ G+  LPS
Sbjct: 286 RLVTNNRLWPLNLYKGVVWED-NPKFFYIGXQDQWYSFNXFDAQAWYARDVIXGRLPLPS 344

>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 188/434 (43%), Gaps = 65/434 (14%)
Query: 13  KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYD---------PNTD--- 58
           + + +IGAGPSGLV A+ L  E    +V + E+    GG W Y          P+T+   
Sbjct: 9   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 68
Query: 59  QTE----------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLK 108
            TE            S +Y  L+  +P E+ GY D  F         +FP    +  Y +
Sbjct: 69  TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF----KPQTLQFPHRHTIQEYQR 124
Query: 109 DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXX 168
            + Q   L   I+  T V  +   D   ++                              
Sbjct: 125 IYAQP--LLPFIKLATDVLDIEKKDGSWVV---------TYKGTKAGSPISKDIFDAVSI 173
Query: 169 XTGHYSYPRLPSIKGMDKWKR----KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMEL 224
             GHY  P +P+IKG+D++ +      +HS ++R PE F  E V+VVG + S  D+   L
Sbjct: 174 CNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHL 233
Query: 225 VEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA--DTI 282
             VAK  H   +SL     L     ++ +L   P+I       R  ++ G  V +  D +
Sbjct: 234 TPVAK--HPIYQSL-----LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRV 286
Query: 283 LYCTGYSYSFPF-----LDTKGIVVVDD-DRVGPLYEHTF--PPSLAPSLSFVGIPRKLI 334
           +YCTGY YS PF     L +    ++DD   V  +Y+H F  P    P+L+FVG+   ++
Sbjct: 287 IYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP---DPTLAFVGLALHVV 343
Query: 335 GFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDR 394
            FP  ++QA ++A++ SG+  LPS ++ ++   E   S   A    H+     +  Y ++
Sbjct: 344 PFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELXFSLSGANNXYHSLDYPKDATYINK 403
Query: 395 YAD--QIGFPHLEE 406
             D  +   P LEE
Sbjct: 404 LHDWCKQATPVLEE 417

>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 188/434 (43%), Gaps = 65/434 (14%)
Query: 13  KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYD---------PNTD--- 58
           + + +IGAGPSGLV A+ L  E    +V + E+    GG W Y          P+T+   
Sbjct: 7   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 59  QTE----------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLK 108
            TE            S +Y  L+  +P E+ GY D  F         +FP    +  Y +
Sbjct: 67  TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF----KPQTLQFPHRHTIQEYQR 122
Query: 109 DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXX 168
            + Q   L   I+  T V  +   D   ++                              
Sbjct: 123 IYAQP--LLPFIKLATDVLDIEKKDGSWVV---------TYKGTKAGSPISKDIFDAVSI 171
Query: 169 XTGHYSYPRLPSIKGMDKWKR----KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMEL 224
             GHY  P +P+IKG+D++ +      +HS ++R PE F  E V+VVG + S  D+   L
Sbjct: 172 CNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHL 231
Query: 225 VEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA--DTI 282
             VAK  H   +SL     L     ++ +L   P+I       R  ++ G  V +  D +
Sbjct: 232 TPVAK--HPIYQSL-----LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRV 284
Query: 283 LYCTGYSYSFPF-----LDTKGIVVVDD-DRVGPLYEHTF--PPSLAPSLSFVGIPRKLI 334
           +YCTGY YS PF     L +    ++DD   V  +Y+H F  P    P+L+FVG+   ++
Sbjct: 285 IYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP---DPTLAFVGLALHVV 341
Query: 335 GFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDR 394
            FP  ++QA ++A++ SG+  LPS ++ ++   E   S   A    H+     +  Y ++
Sbjct: 342 PFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELXFSLSGANNXYHSLDYPKDATYINK 401
Query: 395 YAD--QIGFPHLEE 406
             D  +   P LEE
Sbjct: 402 LHDWCKQATPVLEE 415

>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 37/236 (15%)
Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT 73
           +  VIGAG +G+  A  + + G +V+ +E   DVGG W ++            Y   RL 
Sbjct: 11  DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-----------RYPGCRLD 59
Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV---EYVG 130
           +     GY     ++ +      F    E+  Y+        +R+  RFNTRV    YV 
Sbjct: 60  TESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVE 119
Query: 131 MLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSIKGMDKWKRK 190
                E+ + N+ +                         TG  S  R+P IKG+D +K +
Sbjct: 120 NDRLWEVTLDNEEV----------------VTCRFLISATGPLSASRMPDIKGIDSFKGE 163
Query: 191 QMHSHIYRVPEP-------FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239
             HS  +            F  + V V+G   +G  I     E AKE+++  ++ N
Sbjct: 164 SFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 33/223 (14%)
Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
           S +V VIG G SGL A   LR+ G   V+L+     GG W +             + SL 
Sbjct: 3   SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH------------AWHSLH 50
Query: 72  LTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
           L SP        +P    +G     +P   E+  YL  + Q++ L  ++R   RV+ V  
Sbjct: 51  LFSPAGWSSIPGWPMPASQG----PYPARAEVLAYLAQYEQKYAL-PVLR-PIRVQRVSH 104
Query: 132 LDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSIKGMDKWKRKQ 191
                 ++  D                           TG +     P  +G++ +   Q
Sbjct: 105 FGERLRVVARD---------------GRQWLARAVISATGTWGEAYTPEYQGLESFAGIQ 149
Query: 192 MHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234
           +HS  Y  P PF    V ++G   SG  I  E+  VA+   ++
Sbjct: 150 LHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWIT 192

>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 45/245 (18%)
Query: 4   DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH 63
           D  +Q  +  +V V+GAG SGL A   LR+ G  V V+E   DVGG W ++         
Sbjct: 8   DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN--------- 58
Query: 64  SSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFN 123
              Y   R         Y+    VL++     R+    E+  Y+     +F LR  I F+
Sbjct: 59  --RYPGARCAIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFH 116
Query: 124 TRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHY 173
           T V      +           G+ I    LI                         +G  
Sbjct: 117 TTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASGQL 153
Query: 174 SYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVH 232
           S P+LP+  G+  +     H+  +   P  F  + V V+G   SG  +S ++ + A E+ 
Sbjct: 154 SVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF 213
Query: 233 LSAKS 237
           +  ++
Sbjct: 214 VFQRT 218

>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 4   DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTDQTE 61
           D  +Q  +  +V V+GAG SGL A   LR+ G  V V+E   DVGG W ++  P   + +
Sbjct: 8   DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA-RCD 66
Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           + S  Y             Y+    VL++     R+    E+  Y+     +F LR  I 
Sbjct: 67  IESIEYC------------YSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 114
Query: 122 FNTRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTG 171
           F+T V      +           G+ I    LI                         +G
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASG 151
Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             S P+LP+  G+  +     H+  +   P  F  + V V+G   SG  +S ++ + A E
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 231 VHLSAKS 237
           + +  ++
Sbjct: 212 LFVFQRT 218

>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 4   DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTDQTE 61
           D  +Q  +  +V V+GAG SGL A   LR+ G  V V+E   DVGG W ++  P   + +
Sbjct: 8   DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA-RCD 66
Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           + S  Y             Y+    VL++     R+    E+  Y+     +F LR  I 
Sbjct: 67  IESIEYC------------YSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 114
Query: 122 FNTRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTG 171
           F+T V      +           G+ I    LI                         +G
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASG 151
Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             S P+LP+  G+  +     H+  +   P  F  + V V+G   SG  +S ++ + A E
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 231 VHLSAKS 237
           + +  ++
Sbjct: 212 LFVFQRT 218

>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 4   DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTDQTE 61
           D  +Q  +  +V V+GAG SGL A   LR+ G  V V+E   DVGG W ++  P   + +
Sbjct: 8   DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA-RCD 66
Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           + S  Y             Y+    VL++     R+    E+  Y+     +F LR  I 
Sbjct: 67  IESIEYC------------YSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 114
Query: 122 FNTRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTG 171
           F+T V      +           G+ I    LI                         +G
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASG 151
Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
             S P+LP+  G+  +     H+  +   P  F  + V V+G   SG  +S ++ + A E
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 231 VHLSAKS 237
           + +  ++
Sbjct: 212 LFVFQRT 218

>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTD 58
           + + D      S +V V+GAG +GL A    R +G  V   E    VGG W ++  P   
Sbjct: 10  VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA- 68
Query: 59  QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
           + +V S  Y+            Y+  P + ++     ++    E+  YL+    RF LR 
Sbjct: 69  RCDVESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRR 116
Query: 119 MIRFNTRV 126
            IRF+TRV
Sbjct: 117 DIRFDTRV 124

>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTD 58
           + + D      S +V V+GAG +GL A    R +G  V   E    VGG W ++  P   
Sbjct: 10  VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA- 68
Query: 59  QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
           + +V S  Y+            Y+  P + ++     ++    E+  YL+    RF LR 
Sbjct: 69  RCDVESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRR 116
Query: 119 MIRFNTRV 126
            IRF+TRV
Sbjct: 117 DIRFDTRV 124

>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTD 58
           + + D      S +V V+GAG +GL A    R +G  V   E    VGG W ++  P   
Sbjct: 10  VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA- 68
Query: 59  QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
           + +V S  Y+            Y+  P + ++     ++    E+  YL+    RF LR 
Sbjct: 69  RCDVESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRR 116
Query: 119 MIRFNTRV 126
            IRF+TRV
Sbjct: 117 DIRFDTRV 124

>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter Aurescens Length = 482

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          ++V ++GAGPSGL AAREL+K G  V VLE    VGG+
Sbjct: 8  RDVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGR 45

>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-Glucose Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
          +SK + ++GAG SG V  R+L ++GH+V +++Q   +GG   YD    +T V   VY 
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYG 58

>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae Oxidised Fad Length = 384

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
          +SK + ++GAG SG V  R+L ++GH+V +++Q   +GG   YD    +T V   VY 
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYG 58

>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With Fadh- Length = 384

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
          +SK + ++GAG SG V  R+L ++GH+V +++Q   +GG   YD    +T V   VY 
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYG 58

>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: Wild Type Enzyme Length = 453

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
          ++V ++GAGPSGL AA  LRK G  V V+E    VGG+   D
Sbjct: 6  RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47

>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c Mutant Length = 453

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
          ++V ++GAGPSGL AA  LRK G  V V+E    VGG+   D
Sbjct: 6  RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47

>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant Length = 453

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
          ++V ++GAGPSGL AA  LRK G  V V+E    VGG+   D
Sbjct: 6  RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47

>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu Venom Length = 497

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 9   CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
            +  K V ++GAG SGL AA  L   GH+V VLE +   GGQ       ++ E   +   
Sbjct: 43  TSNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQ--VKTYRNEKEGWYANLG 100
Query: 69  SLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKE-LWLYLKDFCQRFG 115
            +RL     I+      ++ K G  +  F    E  W ++K+  +R G
Sbjct: 101 PMRLPEKHRIVR----EYIRKFGLQLNEFSQENENAWYFIKNIRKRVG 144

>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera Ammodytes Ammodytes: Stabilization Of The Quaternary Structure By Divalent Ions And Structural Changes In The Dynamic Active Site Length = 486

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 7   QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSV 66
           ++ +  K+V V+GAG SGL AA  L   GH+V VLE +   GG+     N+ +       
Sbjct: 28  KKTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSKE-----GW 82
Query: 67  YASL---RLTSPREIMGYTDFPFVLKKGRDVRRFPGHKE-LWLYLKDFCQRFG 115
           YA+L   R+     I+      ++ K G ++  F    +  W ++K+  +R G
Sbjct: 83  YANLGPMRIPEKHRIVR----EYIRKFGLNLNEFSQENDNAWYFIKNIRKRVG 131

>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus Opacus In The Unbound State Length = 489

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ-WLYDPNTDQTEV 62
          S +V V+G GP+GL +A EL+K G++V VLE     GG+ W     +++T++
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDL 62

>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas Length = 486

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 7   QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSV 66
           +  +  K+V V+GAG SGL AA  L   GH+V VLE +   GG+     N D+ + ++++
Sbjct: 28  KATSNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRN-DKEDWYANL 86
Query: 67  YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKE-LWLYLKDFCQRFG 115
              +RL     I+      ++ K G  +  F    +  W ++K+  +R G
Sbjct: 87  -GPMRLPEKHRIVR----EYIRKFGLQLNEFSQENDNAWYFIKNIRKRVG 131

>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli 2,4- Dienoyl Coa Reductase Length = 671

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
           Q KN+ V+GAGP+GL  A      GH+V + + + ++GGQ+
Sbjct: 372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 412

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	1e-138
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	1e-134
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	4e-62
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	4e-41
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	3e-26
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	1e-24
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	9e-24
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	1e-23
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	3e-19
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	1e-18
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	8e-18
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	5e-12
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	8e-12
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-11
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-11
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-11
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	5e-11
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	7e-11
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	7e-11
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	1e-10
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	1e-10
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-10
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	4e-10
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	4e-10
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-09
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-09
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-09
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	2e-09
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-09
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	4e-09
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	4e-09
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	6e-09
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	8e-09
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	9e-09
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	2e-08
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	3e-08
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	3e-08
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-08
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	4e-08
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	4e-08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-08
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	4e-08
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	5e-08
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	7e-08
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-08
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-07
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-07
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-07
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	2e-07
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	2e-07
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-07
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-07
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-07
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-07
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	3e-07
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-07
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-07
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	5e-07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	6e-07
3dme_A	369	Conserved exported protein; structural genomics, P	6e-07
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	8e-07
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	9e-07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	9e-07
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	2e-06
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	2e-06
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-06
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	5e-06
2bry_A	497	NEDD9 interacting protein with calponin homology a	6e-06
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	6e-06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	7e-06
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	7e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	9e-06
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	1e-05
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	2e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	2e-05
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-05
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	3e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	3e-05
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	3e-05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	4e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	4e-05
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	4e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	4e-05
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	4e-05
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	5e-05
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	5e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	6e-05
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	7e-05
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	8e-05
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	9e-05
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	1e-04
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	1e-04
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-04
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	1e-04
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	2e-04
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	2e-04
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	3e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	3e-04
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	3e-04
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	4e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	4e-04
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	4e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	4e-04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	8e-04

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  403 bits (1037), Expect = e-138
 Identities = 107/431 (24%), Positives = 190/431 (44%), Gaps = 29/431 (6%)

Query: 12  SKNVCVIGAGPSGLVAAR------ELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
           +  + ++GAGPSG+   R      E   E   +V  E+  D GGQW Y   T   E    
Sbjct: 2   ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61

Query: 62  VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
           VHSS+Y  L    P+E + + D+ F    G+ +  +P  + LW Y+K   ++ G+R+ IR
Sbjct: 62  VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121

Query: 122 FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSI 181
           FNT V +V   +  +         + V  ++   D +  E FD VV  TGH+S P +P  
Sbjct: 122 FNTAVRHVEFNEDSQ--------TFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173

Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
           +G +K+  + +H+H +R    F+++ V++VG+S S +DI  +  +   +  +S       
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYR---- 229

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
                      N    P +  +  +    F DG     D I+ CTGY + FPFL+    +
Sbjct: 230 -TAPMGYKWPENWDERPNLVRVDTEN-AYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL 287

Query: 302 VVDDD-RVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWD 360
           V ++      LY+        P   ++G+  +   F  F++QA +   ++ G+  LPS +
Sbjct: 288 VTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKE 346

Query: 361 QMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIGFPHLEEWRKG-LCISALVNS 419
           +M       +  +++  +     +     +Y     D   +P  +        +    + 
Sbjct: 347 EMKADSMA-WREKELTLVTAEEMYTY-QGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHK 404

Query: 420 DANLETYRDSW 430
             N+ T+RD  
Sbjct: 405 KENIMTFRDHS 415

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  392 bits (1009), Expect = e-134
 Identities = 119/438 (27%), Positives = 188/438 (42%), Gaps = 63/438 (14%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTE------- 61
             + + +IGAGPSGLV A+ L  E    +V + E+    GG W Y               
Sbjct: 5   TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNP 64

Query: 62  ---------------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLY 106
                            S +Y  L+  +P E+MGY D  F         +FP    +  Y
Sbjct: 65  ILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSF----KPQTLQFPHRHTIQEY 120

Query: 107 LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD-KVVEEVFDA 165
            + + Q   L   I+  T V  +   D            WVV  K  KA   + +++FDA
Sbjct: 121 QRIYAQ--PLLPFIKLATDVLDIEKKDG----------SWVVTYKGTKAGSPISKDIFDA 168

Query: 166 VVVATGHYSYPRLPSIKGMDKWKRK----QMHSHIYRVPEPFRNEVVVVVGNSLSGQDIS 221
           V +  GHY  P +P+IKG+D++ +      +HS ++R PE F  E V+VVG + S  D+ 
Sbjct: 169 VSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLV 228

Query: 222 MELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA-- 279
             L  VAK     +              ++ +L   P+I       R  ++ G  V +  
Sbjct: 229 RHLTPVAKHPIYQSLL-------GGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNI 281

Query: 280 DTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL 333
           D ++YCTGY YS PF         +  ++ D   V  +Y+H F     P+L+FVG+   +
Sbjct: 282 DRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP-DPTLAFVGLALHV 340

Query: 334 IGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCD 393
           + FP  ++QA ++A++ SG+  LPS ++ ++   E   S   A    H+     +  Y +
Sbjct: 341 VPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPKDATYIN 400

Query: 394 RYADQIG--FPHLEEWRK 409
           +  D      P LEE   
Sbjct: 401 KLHDWCKQATPVLEEEFP 418

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  204 bits (522), Expect = 4e-62
 Identities = 74/391 (18%), Positives = 127/391 (32%), Gaps = 84/391 (21%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASL 70
            S +V VIG G SGL A   LR+ G   V+L+     GG W +             + SL
Sbjct: 2   DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH------------AWHSL 49

Query: 71  RLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG 130
            L SP        +P           +P   E+  YL  + Q++ L   +    RV+ V 
Sbjct: 50  HLFSPAGWSSIPGWPM----PASQGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVS 103

Query: 131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRK 190
                            V +++ +     + +  AV+ ATG +     P  +G++ +   
Sbjct: 104 HFGER----------LRVVARDGR-----QWLARAVISATGTWGEAYTPEYQGLESFAGI 148

Query: 191 QMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA--------------- 235
           Q+HS  Y  P PF    V ++G   SG  I  E+  VA+   ++                
Sbjct: 149 QLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVL 208

Query: 236 ------------------------KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTF 271
                                     + +   +         L   P        G + +
Sbjct: 209 FERATERWKAQQEGREPDLPPGGFGDIVMVPPV-LDARARGVLAAVPPPARFSPTG-MQW 266

Query: 272 VDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIP- 330
            DG     D +++CTG+  +   L   G+ +V       +          PS+  +G   
Sbjct: 267 ADGTERAFDAVIWCTGFRPALSHLK--GLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGD 324

Query: 331 ------RKLIG-FPFFESQAKWIAQLLSGKR 354
                   LIG   +     + +    +  +
Sbjct: 325 WNGMASATLIGVTRYAREAVRQVTAYCADHQ 355

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score =  149 bits (377), Expect = 4e-41
 Identities = 62/380 (16%), Positives = 132/380 (34%), Gaps = 60/380 (15%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V +IGAG +G+  A  L+  G   V++ +   VG  + + P      +  S  ++     
Sbjct: 7   VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWP-KSTRTITPSFTSNGFGMP 65

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC 134
               +     P               +    YL+     + L   I  NT V  +   D 
Sbjct: 66  DMNAISMDTSPA----FTFNEEHISGETYAEYLQVVANHYELN--IFENTVVTNISADDA 119

Query: 135 GELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHS 194
                      + + +  +          D + VATG Y++P+ P   G        +H 
Sbjct: 120 Y----------YTIATTTE------TYHADYIFVATGDYNFPKKPFKYG--------IHY 155

Query: 195 HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS------------- 241
                 + F     VV+G + SG D + +L +   ++ L   +  ++             
Sbjct: 156 SEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPY 215

Query: 242 --EGLSKVISKHNNLHLHPQ-----IDCLREDGRVTFVDGC-WVTADTILYCTGYSYSFP 293
             + L  VI +   + ++       ID       ++F  G    T    +  TG+  +  
Sbjct: 216 TRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKN 275

Query: 294 FLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIP----RKLIGFPF-FESQAKWIAQ 348
            +  +  V  + D            +  P++  +G         + + + F ++   +A 
Sbjct: 276 PIVQQLFVTTNQD---IKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAH 332

Query: 349 LLSGKRTLPSWDQMMQSVKE 368
           LL+ +  LP+  +++++ ++
Sbjct: 333 LLTQREGLPAKQEVIENYQK 352

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score =  110 bits (277), Expect = 3e-26
 Identities = 60/234 (25%), Positives = 86/234 (36%), Gaps = 49/234 (20%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNT------DQTEVHSSVYA 68
             VIGAG +G+  A  + + G +V+ +E   DVGG W Y  N       D     S  Y 
Sbjct: 12  AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW-YW-NRYPGCRLD---TESYAYG 66

Query: 69  SLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEY 128
                       Y     ++ +      F    E+  Y+        +R+  RFNTRV  
Sbjct: 67  ------------YFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVT- 113

Query: 129 VGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA--VVVATGHYSYPRLPSIKGMDK 186
                        +   W V           EEV     ++ ATG  S  R+P IKG+D 
Sbjct: 114 -------AARYVENDRLWEVTLDN-------EEVVTCRFLISATGPLSASRMPDIKGIDS 159

Query: 187 WKRKQMHS----HIYRVPEP---FRNEVVVVVGNSLSG-QDISMELVEVAKEVH 232
           +K +  HS               F  + V V+G   +G Q I     E AKE++
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIP-IAAETAKELY 212

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score =  105 bits (265), Expect = 1e-24
 Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 38/201 (18%)

Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNT--- 57
           + + D      S +V V+GAG +GL A    R +G  V   E    VGG W Y  N    
Sbjct: 10  VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVW-YW-NRYPG 67

Query: 58  ---DQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF 114
              D   V S  Y+            Y+  P + ++     ++    E+  YL+    RF
Sbjct: 68  ARCD---VESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRF 112

Query: 115 GLREMIRFNTRVEYVGM-LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY 173
            LR  IRF+TRV      LD        + ++W V++               +VVA G  
Sbjct: 113 DLRRDIRFDTRV--TSAVLD-------EEGLRWTVRTDRGDEVS-----ARFLVVAAGPL 158

Query: 174 SYPRLPSIKGMDKWKRKQMHS 194
           S    P+  G+D++    +H+
Sbjct: 159 SNANTPAFDGLDRFTGDIVHT 179

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score =  103 bits (258), Expect = 9e-24
 Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 47/231 (20%)

Query: 15  VCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYDPNT------DQTEVHSSVY 67
             VIGAG  G+ A  +L  E G   V  ++    GG W Y  N       D     S +Y
Sbjct: 11  AVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW-YW-NRYPGALSD---TESHLY 65

Query: 68  ASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVE 127
              R +  R+++  + +            +    E+  YL+D   RF LR   +F T V 
Sbjct: 66  ---RFSFDRDLLQESTWK---------TTYITQPEILEYLEDVVDRFDLRRHFKFGTEVT 113

Query: 128 YVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKW 187
                     +  +D   W V +     D         VV A G  S    P++ G+D +
Sbjct: 114 --------SALYLDDENLWEVTT-----DHGEVYRAKYVVNAVGLLSAINFPNLPGLDTF 160

Query: 188 KRKQMHS----HIYRVPEPFRNEVVVVVGNSLSG-QDISMELVEVAKEVHL 233
           + + +H+                 V V+G   +G Q I+  L    + + +
Sbjct: 161 EGETIHTAAWPEGK----SLAGRRVGVIGTGSTGQQVIT-SLAPEVEHLTV 206

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score =  102 bits (257), Expect = 1e-23
 Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 38/187 (20%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNT------DQTEVHSSVYA 68
           V V+GAG SGL A   LR+ G  V V+E   DVGG W Y  N       D   + S  Y 
Sbjct: 19  VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW-YW-NRYPGARCD---IESIEY- 72

Query: 69  SLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEY 128
               +   E++   ++           R+    E+  Y+     +F LR  I F+T V  
Sbjct: 73  --CYSFSEEVLQEWNWT---------ERYASQPEILRYINFVADKFDLRSGITFHTTV-- 119

Query: 129 VGML-DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKW 187
                D            W V +     +         +++A+G  S P+LP+  G+  +
Sbjct: 120 TAAAFD-------EATNTWTVDT-----NHGDRIRARYLIMASGQLSVPQLPNFPGLKDF 167

Query: 188 KRKQMHS 194
                H+
Sbjct: 168 AGNLYHT 174

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 89.7 bits (223), Expect = 3e-19
 Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 88/253 (34%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
            Q KN+ V+GAGP+GL  A      GH+V + + + ++GGQ                   
Sbjct: 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ------------------- 411

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDF---CQRFGLREMIRFNTRV 126
             +                       + PG +E +  L+ +    +  G+   ++ N  V
Sbjct: 412 FNIAK---------------------QIPGKEEFYETLRYYRRMIEVTGVT--LKLNHTV 448

Query: 127 EYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDK 186
                                       AD++  + FD  ++A+G    PR P I G+D 
Sbjct: 449 T---------------------------ADQL--QAFDETILASG--IVPRTPPIDGID- 476

Query: 187 WKRKQMHSHIYRVPEPFRNEV-----VVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
                 H  +    +  R++      V ++G    G D +M L +  +    +       
Sbjct: 477 ------HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNE 530

Query: 242 EGLSKVISKHNNL 254
            G+   + +   L
Sbjct: 531 WGIDSSLQQAGGL 543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 87.7 bits (218), Expect = 1e-18
 Identities = 49/305 (16%), Positives = 80/305 (26%), Gaps = 97/305 (31%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
                V V+GAGPSGL AAR L   G+ VV+ E   D+GG+                   
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR------------------- 429

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM----IRFNTR 125
           +   S                       PG        +       L E+    I   + 
Sbjct: 430 VTQES---------------------ALPGLSAWGRVKEYREAV--LAELPNVEIYRESP 466

Query: 126 VEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLP------ 179
           +                             D +VE  F+ V+ ATG  +  R        
Sbjct: 467 MT---------------------------GDDIVEFGFEHVITATG--ATWRTDGVARFH 497

Query: 180 --SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237
             ++   +  +               +  VV    +   G  ++  L +   EV +    
Sbjct: 498 TTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPG 557

Query: 238 LNISEGLSKVIS--------KHNNLHLHPQIDCLR-EDGRVTFVDG-----CWVTADTIL 283
             +S   +              N +        +    G VT  D        +  D ++
Sbjct: 558 AQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVV 617

Query: 284 YCTGY 288
             T  
Sbjct: 618 MVTAR 622

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 84.7 bits (209), Expect = 8e-18
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 32/238 (13%)

Query: 15  VCVIGAGPSGLVAARELRKEGH-----RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
           +  +G GPS +  A  L++         V+ L++  D    W  +    Q+E+  S    
Sbjct: 33  LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKD 90

Query: 70  LR-LTSPREIMGYTDFPFVLKKGRDV------RRFPGHKELWLYLKDFCQRFGLREMIRF 122
           L  L +P     Y+   ++ K  R V        +P   E   YL+     F  +   R+
Sbjct: 91  LVSLRNPTS--PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRY 146

Query: 123 NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIK 182
              V  +      E ++    ++ +         + +     A+VV+ G    PR+P + 
Sbjct: 147 GEEVLRI------EPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG--GTPRIPQVF 198

Query: 183 GMDKWKRKQMHSHIY------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234
              K   +  H   Y      +     +   + ++G   S  +  ++L +    V   
Sbjct: 199 RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQAD 256

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 46/280 (16%), Positives = 81/280 (28%), Gaps = 80/280 (28%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
               +V ++GAGPSG  AAR L + G+ V + +    +GG                    
Sbjct: 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH------------------- 427

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
           L   +                       PG  E   +           ++ +   + +  
Sbjct: 428 LNQVA---------------------ALPGLGEWSYHRDYR-----ETQITKLLKKNKES 461

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPS--------I 181
                 +L +G          K   AD V++   D V++ATG  +              I
Sbjct: 462 ------QLALGQ---------KPMTADDVLQYGADKVIIATG--ARWNTDGTNCLTHDPI 504

Query: 182 KGMDKWKRKQMHSH-IYRVPEPFRNEVVVVV-GNSLSGQDISMELVEVAKEVHLSAKSLN 239
            G D     Q+    +    +     VV++          ++ +L     EV        
Sbjct: 505 PGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVT------- 557

Query: 240 ISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA 279
           I  G+      H  L     +  L E   V  +   + + 
Sbjct: 558 IVSGVHLANYMHFTLEYPNMMRRLHELH-VEELGDHFCSR 596

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 68/230 (29%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTDQTEVHSSV 66
           + +IG GP GL  A         V ++E    +GGQ        ++YD            
Sbjct: 10  ITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYD------------ 57

Query: 67  YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV 126
                      + G   FP +  + +         EL   LK+   +F     I     V
Sbjct: 58  -----------VAG---FPKI--RAQ---------ELINNLKEQMAKFDQT--ICLEQAV 90

Query: 127 EYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY-PRLPSIKGMD 185
           E V     G   +  +  +    SK              V++  G+ ++ PR   ++  +
Sbjct: 91  ESVEKQADGVFKLVTN--EETHYSK-------------TVIITAGNGAFKPRKLELENAE 135

Query: 186 KWKRKQMHSHIYRVPEP--FRNEVVVVVGNSLSGQDISMELVEVAKEVHL 233
           +++ K +H   Y V +   F    V ++G   S  D ++ L  +AKEV +
Sbjct: 136 QYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSI 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 90/570 (15%), Positives = 158/570 (27%), Gaps = 194/570 (34%)

Query: 2   VSDDHQQCAQSKNVCVIGAGPSGLVAAREL----RKEGHRVV------VLEQNHDVGGQW 51
           V D  +     + +  I      +     L      +   +V      VL  N+     +
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----F 93

Query: 52  LYDP---NTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLK 108
           L  P      Q  + + +Y        R+ + Y D     K   +V R   + +L     
Sbjct: 94  LMSPIKTEQRQPSMMTRMY-----IEQRDRL-YNDNQVFAK--YNVSRLQPYLKL----- 140

Query: 109 DFCQRFGLREMIRFNTRVEYVGMLDCGE--LIIG-----------NDLIKWVVKSKEKKA 155
               R  L E+ R    V   G+L  G+  + +            +  I W+        
Sbjct: 141 ----RQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 156 DKVVEEV------FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIY------------ 197
           + V+E +       D    +   +S      I  +    R+ + S  Y            
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 198 -RVPEPF----------RNEVVVVVGNSLSGQDISMELVEV----AKEVHLSAKSLNIS- 241
            +    F          R + V    ++ +   IS++   +     +   L  K L+   
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIV 301
           + L + +   N   L   I     DG  T+ D  W   +     T    S   L+     
Sbjct: 316 QDLPREVLTTNPRRL-SIIAESIRDGLATW-DN-WKHVNCDKLTTIIESSLNVLEP---- 368

Query: 302 VVDDDRVGPLYEH--TFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSW 359
              + R   +++    FPPS         IP  L+              L+        W
Sbjct: 369 --AEYR--KMFDRLSVFPPS-------AHIPTILL-------------SLI--------W 396

Query: 360 DQM-----MQSVKEFYHSRDVAGIPKHNT---HDIANFEYC--------------DRY-- 395
             +     M  V + +    V   PK +T     I   E                D Y  
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDHYNI 455

Query: 396 -------------ADQ-----IGFPHLEE------------------W--RK-------G 410
                         DQ     IG  HL+                   +  +K        
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 411 LCISALVNSDANLETYRDSWDDHELLQEAL 440
               +++N+   L+ Y+    D++   E L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERL 544

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 89/284 (31%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTDQTEVHSSV 66
           V ++GAGP+GL A   +   G     ++   + GGQ        ++YD            
Sbjct: 8   VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYD------------ 55

Query: 67  YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV 126
                      + G   FP V    +         +L   L +    F          R 
Sbjct: 56  -----------VAG---FPKVY--AK---------DLVKGLVEQVAPFNPV--YSLGERA 88

Query: 127 EYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA--VVVATGHYSY-PRLPSIKG 183
           E         L    D   + V + +          + A  V++A G  ++ PR     G
Sbjct: 89  E--------TLEREGD--LFKVTTSQGN-------AYTAKAVIIAAGVGAFEPRRIGAPG 131

Query: 184 MDKWKRKQMHSHIYRVPEP--FRNEVVVVVGNSLSGQDISMELVEVAKEVHL-------- 233
             +++ + ++   Y V     F+ + V++VG   S  D ++ L++ A+ + L        
Sbjct: 132 EREFEGRGVY---YAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR 188

Query: 234 ----SAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVD 273
               S K L  +    ++      +    ++  +  D RV +  
Sbjct: 189 AHEASVKELMKAHEEGRL-----EVLTPYELRRVEGDERVRWAV 227

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 66.1 bits (161), Expect = 8e-12
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            S +V V+G GP+GL +A EL+K G++V VLE     GG
Sbjct: 9  KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG 48

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          +  K+V ++GAG +GL AA  L   GH+V VLE +   GG
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 65.1 bits (158), Expect = 1e-11
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 3  SDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          S    + + +K V VIGAG SGL AA +L+  G  V V E     GG
Sbjct: 4  SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            ++V ++GAGPSGL AA  LRK G  V V+E    VGG
Sbjct: 4  LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            V+GAG  GL+A   L + GH ++VLE++  +GG
Sbjct: 3  AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 18/45 (40%), Positives = 22/45 (48%)

Query: 5  DHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           H       NV V+G G SGL  A  LR  G   V+LE +  +GG
Sbjct: 9  HHMPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 53

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGG 49
          ++   + +IGAGP+GL A   L + G H   +LE+   VGG
Sbjct: 4  SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 61.9 bits (149), Expect = 1e-10
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-VGG 49
             K + ++GAG +GLVA   L + GH V +LE N + VGG
Sbjct: 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          +   +V V+G G SG+ AA+ L   G  VVVLE    VGG
Sbjct: 2  SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG 41

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            V+G G SGL AAR+L   G +V++LE    +GG
Sbjct: 4  AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGG 38

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 70/232 (30%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTDQTEVHSSV 66
           + +IG GP+G+ AA +         ++E    +GGQ         +YD            
Sbjct: 17  LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYD------------ 64

Query: 67  YASLRLTSPREIMGYTDFPFVLKKGRD-VRRFPGHKELWLYLKDFCQRFGLREMIRFNTR 125
                      + G   FP V     D V            L    +R+     +  N  
Sbjct: 65  -----------VAG---FPEV--PAIDLVES----------LWAQAERYNPD--VVLNET 96

Query: 126 VEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY-PR-LPSIKG 183
           V     LD G      +    V +S+             AV++A G  ++ PR LP +  
Sbjct: 97  VTKYTKLDDGTFETRTNTGN-VYRSR-------------AVLIAAGLGAFEPRKLPQLGN 142

Query: 184 MDKWKRKQMHSHIYRVPEP--FRNEVVVVVGNSLSGQDISMELVEVAKEVHL 233
           +D      ++   Y V     F+ + VV+VG   S  D ++ L++ A  V L
Sbjct: 143 IDHLTGSSVY---YAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTL 191

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG 49
           SK + ++G G +GL AA    +      + +LE    +GG
Sbjct: 3  SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVY 67
          +SK + ++GAG SG V  R+L ++GH+V +++Q   +GG   YD    +T V   VY
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN-SYDARDSETNVMVHVY 57

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
             VIGAG  GL++A  L K GH V V E+    GG
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGG 37

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 58.2 bits (142), Expect = 2e-09
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 50/196 (25%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV--------GGQ----WLYDPNTD 58
           Q     +IGAG +GL  A +L K G  V V +    +        GG          N +
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFT-----NLE 57

Query: 59  QTEVH--SS----VYASLRLTSPREIMGYTDFPFVLKKG------RDVRRFPGHK--ELW 104
            T  H  S     V ++L   +  + +       V ++G         + F      ++ 
Sbjct: 58  VTPAHYLSQNPHFVKSALARYTNWDFIS-----LVAEQGITYHEKELGQLFCDEGAEQIV 112

Query: 105 LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD 164
             LK  C ++G +  I   + V  V      E I  ++ +++V++    +          
Sbjct: 113 EMLKSECDKYGAK--ILLRSEVSQV------ERIQNDEKVRFVLQVNSTQWQ------CK 158

Query: 165 AVVVATGHYSYPRLPS 180
            ++VATG  S P L +
Sbjct: 159 NLIVATGGLSMPGLGA 174

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 60/233 (25%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-------VGG-------QWLYDPNTDQT 60
           V +IG G +G  AA +L + G ++++++            G          L  P     
Sbjct: 9   VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGE 68

Query: 61  EVHSSVYASLRLTSP--REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
           E+ + +   ++L SP  + +       F       +               + QR  + +
Sbjct: 69  ELENKIN-GIKLYSPDMQTVWTVNGEGFE------LNA-----------PLYNQR--VLK 108

Query: 119 -------MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171
                   I   T           + I  +  +K       ++ ++ +      VV ATG
Sbjct: 109 EAQDRGVEIWDLTTAM--------KPIFEDGYVK-GAVLFNRRTNEELTVYSKVVVEATG 159

Query: 172 HYSYPR--LPSIKGMDK-WKRKQMHS---HIYRVPEPF--RNEVVVVVGNSLS 216
           +    R  LP    + +    K        +    E     + + + +    S
Sbjct: 160 YSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETS 212

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGG 49
           + V V+G G SGL A+  L +     +VV++E +  +GG
Sbjct: 2  GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG 41

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDVGG 49
            K+V +IG G +GL AA  + KE         + ++E +  VGG
Sbjct: 4  GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGG 49
           +  + +IGAGP+GL AA  L + G++   + E N   GG
Sbjct: 8  LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 18/221 (8%)

Query: 5   DHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT---- 60
                 ++  V +IG+G SGL AAR+L+  G  V +LE    VGG+       +      
Sbjct: 100 KPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159

Query: 61  ------EVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF 114
                    + +    +  +          P     G+ V +         + +      
Sbjct: 160 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATS 219

Query: 115 GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174
            L   + FN        +   + +     ++ V++ +EK       E +  +V       
Sbjct: 220 YLSHQLDFN--------VLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELK 271

Query: 175 YPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSL 215
                 +   +K K            +P R+     +  S 
Sbjct: 272 ELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSK 312

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 56.2 bits (135), Expect = 8e-09
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           +  ++G+G  G V A EL+K   +V+V+E+ + +GG
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            +V VIGAGP+GL AA ELR +G+ V V ++   +GG
Sbjct: 123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 21/122 (17%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLE----------------QNHDVGGQWLYD 54
              +V VIG G  GL A R+L   G + ++LE                  +++GG W+  
Sbjct: 38  GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWV-- 95

Query: 55  PNTDQTEVHSSV--YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQ 112
            +  Q+ V   +  Y      SP          F L+       +  H+     L+    
Sbjct: 96  -HWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALH 154

Query: 113 RF 114
           +F
Sbjct: 155 KF 156

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 21/144 (14%)

Query: 14  NVCVIGAGPSGLVAARELRK--EGHRVVVLEQNH--DVGGQ--WLYDPNTDQTEVHSSVY 67
            + VIGAGP+GLV A +L++      + ++E+N   +V G    L            S  
Sbjct: 2   KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYL 61

Query: 68  ASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGH-------KELWLYLKDFCQRFGLREMI 120
            +    +P+    + +   ++          G        + L   L+D C+  G+   I
Sbjct: 62  DAPERLNPQ----FLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIA--I 115

Query: 121 RFNTRVEYVGMLDCGE--LIIGND 142
           RF + +   G L   +  L++  +
Sbjct: 116 RFESPLLEHGELPLADYDLVVLAN 139

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 56/196 (28%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG------GQWLYDPN------- 56
           A+ ++V +IGAG +G++ A E  K G RV+V++     G      G              
Sbjct: 25  AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISG------GGRCNFTN 78

Query: 57  --TDQTEVHSS----VYASLRLTSPREIMGYTDFPFVLKKG------RDVRRFPGHK--E 102
                    S       ++L    P++ +       V + G         + F  H   +
Sbjct: 79  IHASPRNFLSGNPHFCKSALARYRPQDFVA-----LVERHGIGWHEKTLGQLFCDHSAKD 133

Query: 103 LWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV 162
           +   L    +  G++  +R  T +  V     G          + V +     D      
Sbjct: 134 IIRMLMAEMKEAGVQ--LRLETSIGEVERTASG----------FRVTTSAGTVD------ 175

Query: 163 FDAVVVATGHYSYPRL 178
             ++VVA+G  S P++
Sbjct: 176 AASLVVASGGKSIPKM 191

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGG 49
           S +V VIGAGP+GL AA+ L +  G   ++++ N   GG
Sbjct: 9  ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD 58
           V +IG GP+G+ AA EL++    V ++E+   +GG         
Sbjct: 111 VAIIGGGPAGIGAALELQQYL-TVALIEERGWLGGDMWLKGIKQ 153

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLE 42
          V VIGAGP+G VAA  + K G +V ++E
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGFKVKIVE 35

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 53.7 bits (128), Expect = 4e-08
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 14  NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQ-WLYDPNTDQTEVHSSVYASL 70
           +V ++GAG SGL AA  + K     +V ++E +   GG  WL         +    +  L
Sbjct: 67  DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFL 126

Query: 71  R 71
           +
Sbjct: 127 Q 127

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 6  HQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           QQ ++  +  ++GAG +G V A  L   G RV+++++   +GG
Sbjct: 23 EQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 54.6 bits (130), Expect = 5e-08
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 9   CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT 60
             ++  V +IG+G SGL AAR+L+  G  V +LE    VGG+       +  
Sbjct: 275 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV 326

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 53.8 bits (129), Expect = 7e-08
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
          V +IG GP+G VA   L K GH V + E++ 
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
          + VIG GP G   A  +   GHRV++LE+  
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
          V +IGAGPSGL+  + L K G   V+LE+
Sbjct: 5  VAIIGAGPSGLLLGQLLHKAGIDNVILER 33

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGG 49
          V V+GAG SG+ AA+ L + G   +++LE    +GG
Sbjct: 7  VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGG 49
             K V +IGAG +GL AA  L + G    +VLE    VGG
Sbjct: 6  PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD 58
           V V+GAGP+GL AARE  + G RV++L++  + GG  L      
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQ 174

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
           +++   V G G +GL AA  L++ G  V + E++ ++ 
Sbjct: 9  GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 15 VCVIGAGPSGLVAAREL-RKEGHRVVVLEQNHDVGG-QWLY 53
          V V+GAG +GL AA E+ +    +V ++EQ+   GG  WL 
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG 82

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 19/161 (11%)

Query: 11  QSKNVCVIGAGPSGLVAAREL-RKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
              ++ V+G+G  GL  A  +  +   RV+VLE+   +GG   Y     QT +    Y +
Sbjct: 6   ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN-AYSEAEPQTGIEVHKYGA 64

Query: 70  LRLTSPR-----------EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
               +             +   Y    F +  G+   +FP    L               
Sbjct: 65  HLFHTSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAY-QFPMGLGLVSQFFGKYFTPEQAR 123

Query: 119 MI-----RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154
            +           +   + +    +IG  L +  VK    K
Sbjct: 124 QLIAEQAAEIDTADAQNLEEKAISLIGRPLYEAFVKGYTAK 164

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 62/310 (20%), Positives = 110/310 (35%), Gaps = 78/310 (25%)

Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTD 58
           +  DD +    S N  +IG   +G+ AA ++ +  E   VV LE+               
Sbjct: 25  LYDDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY----------- 73

Query: 59  QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLY-LKDFCQRFGLR 117
                S  YA   L            P+V+     +      ++L    +K F  ++G+ 
Sbjct: 74  -----S--YAQCGL------------PYVI--SGAI---ASTEKLIARNVKTFRDKYGID 109

Query: 118 EMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPR 177
              +    V  V            D  K +V ++  K   V E  +D +++ATG    P 
Sbjct: 110 --AKVRHEVTKV------------DTEKKIVYAEHTKTKDVFEFSYDRLLIATG--VRPV 153

Query: 178 LPSIKGMDKWKRKQMHS-----HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-- 230
           +P  +G D      + +      I +  E  + E V ++G    G  I +E+ E   E  
Sbjct: 154 MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIG----GGAIGLEMAETFVELG 209

Query: 231 -----VHLSAKSLN-----ISEGLSKVISKHN-NLHLHPQIDCLREDGRVTFV--DGCWV 277
                +  +          ++E + K   KH+  +  +  +   + + RV  V  D    
Sbjct: 210 KKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTY 269

Query: 278 TADTILYCTG 287
            AD +L   G
Sbjct: 270 KADLVLVSVG 279

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR-LT 73
             VIG+G  G VAA  L + G    ++E      G+    P +D       +    R + 
Sbjct: 14  ALVIGSGYGGAVAALRLTQAGIPTQIVEM-----GRSWDTPGSDGKIFCGMLNPDKRSMW 68

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLY 106
              +              + + R+ G  +   +
Sbjct: 69  LADKTDQPVSNFMGFGINKSIDRYVGVLDSERF 101

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 1  MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
          +    H      KNV +IG GP GL  A+ L++ G  V V E+++D
Sbjct: 15 VPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 14  NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG-----QWLYDPNTDQTEVH 63
           ++ ++GAG  GL AA  L       R+ ++E     GG       L+     +    
Sbjct: 81  DIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPAD 137

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 53/307 (17%), Positives = 116/307 (37%), Gaps = 72/307 (23%)

Query: 1   MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTD 58
           +  DD +    S+ + V+G    G   A  LR+  E   ++++E+   +           
Sbjct: 25  LYDDDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI----------- 73

Query: 59  QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLY-LKDFCQRFGLR 117
                S  +A+  L            P+ +  G  +      ++L +  ++   +RF L 
Sbjct: 74  -----S--FANCGL------------PYYI--GGVI---TERQKLLVQTVERMSKRFNLD 109

Query: 118 EMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPR 177
             IR  + V  +            +  +  +  K    ++   E +D ++++ G  + P 
Sbjct: 110 --IRVLSEVVKI------------NKEEKTITIKNVTTNETYNEAYDVLILSPG--AKPI 153

Query: 178 LPSIKGMDKWKR-KQMHS-----HIYRVPEPFRNEVVVVVGN---------SLSGQDISM 222
           +PSI G+++ K    + +      I    +  +     V+G          +L  + I +
Sbjct: 154 VPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEV 213

Query: 223 ELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLHLHPQIDCLREDGRVTFV-DGCWVTAD 280
            LVE+A +V +      ++  + + +  H+  L     +D L E+G V  +  G  +  D
Sbjct: 214 TLVEMANQV-MPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTD 272

Query: 281 TILYCTG 287
            ++   G
Sbjct: 273 MLILAIG 279

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGG 49
             + ++GAGP+ +  A  L + G+  + + E+   VGG
Sbjct: 188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
            VIGAG  GL  AR L   GH V+V E    +G
Sbjct: 7  CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 50.6 bits (119), Expect = 8e-07
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 14/110 (12%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRK--------EGHRVVVLEQNHDVGGQ-WLYDPNTDQT 60
           A +  + ++G G  G+ A  EL +         G  V + E + D               
Sbjct: 54  AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVR 113

Query: 61  EVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDF 110
            + +      R+++     G       + +   +R        W Y    
Sbjct: 114 GLKAG-----RVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAA 158

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 50.2 bits (119), Expect = 9e-07
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE 61
          V ++G+GP G   AREL   G++V + +      G  +     +  E
Sbjct: 49 VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVE 95

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
             VIGAG  GL AA  L++ G    V E 
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEA 54

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 44/187 (23%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG-------GQWLYDPNTDQTEVHS 64
           ++   VIG GP GL A   L + G   +++E+  +V        G W            S
Sbjct: 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFW----RKRTLNPES 162

Query: 65  SVYA-------------SLRLTSPREIMGYTDFPFV-----LKKGRDVRRFPGHKELWLY 106
           +V                 ++  P          FV      +     +   G  +L   
Sbjct: 163 NVQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTM 222

Query: 107 LKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165
           ++        L   IRF+TRV+        +L + +  I  V  S  ++           
Sbjct: 223 IEKMRATIIELGGEIRFSTRVD--------DLHMEDGQITGVTLSNGEEIK------SRH 268

Query: 166 VVVATGH 172
           VV+A GH
Sbjct: 269 VVLAVGH 275

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 7  QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
          Q  A   +V VIG GPSGL+AA    +EG  V++L++ + +G
Sbjct: 21 QSNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 62

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY-DPNTDQTEVHSSVYASLRLT 73
             VIG G    V+A  L + G + ++LE     G  W    P+ +      +        
Sbjct: 8   AVVIGTGYGAAVSALRLGEAGVQTLMLEM----GQLWNQPGPDGNIFCGMLNPDKRSSWF 63

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLY 106
             R       F ++    R++  + G  +   Y
Sbjct: 64  KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNY 96

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 54/311 (17%), Positives = 99/311 (31%), Gaps = 95/311 (30%)

Query: 13  KNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDV-----------GGQWLYDPNTDQ 59
           K+V VIGA   G  AA   ++      V +++Q   +            G          
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSG---------- 53

Query: 60  TEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
            EV +            E +  T +  V        R P         + F     +   
Sbjct: 54  -EVSN-----------IESLQATPYNVV--------RDP---------EFFRINKDVE-- 82

Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLP 179
               TR   +            D     V+ +  +  +     +D +V+A G  S    P
Sbjct: 83  ALVETRAHAI------------DRAAHTVEIENLRTGERRTLKYDKLVLALG--SKANRP 128

Query: 180 SIKGMDKWKRKQMHS-----HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE---- 230
            ++GMD      + +      +            V+VG    G  I +E+     +    
Sbjct: 129 PVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVG----GGFIGLEMAVSLADMWGI 184

Query: 231 ----VHLSAKSLN------ISEGLSKVISKHN-NLHLHPQIDCLR-EDGRVTFV--DGCW 276
               V L+ + +       +S+ L   + K++  +H   ++  L  E+G+V  V  D   
Sbjct: 185 DTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRT 244

Query: 277 VTADTILYCTG 287
           + AD ++   G
Sbjct: 245 LDADLVILAAG 255

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 5   DHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
              Q   +    V+GAGP GL AA EL   G RVV++E+
Sbjct: 85  QQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEK 123

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
            VIG G  G   A  L KE     + E    +GG+
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTALFESG-TMGGR 54

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
           K + ++GAG +GL     LR+    V V     
Sbjct: 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
          +  + V+G   SGL AA  LR  G  V V E+
Sbjct: 5  TDRIAVVGGSISGLTAALMLRDAGVDVDVYER 36

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           V +IG+G +GL AA   R  G +V++LE+    GG
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGH---RVVVLEQNHDVGGQ 50
            V ++GAG +G + A  LR++      + V ++  D GG+
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGR 42

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
          V + G G  G + A  L ++GHRVVV+EQ
Sbjct: 9  VLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           V V+GAG +G  A+   +K G  V+++++    GG
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG 158

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 55/327 (16%), Positives = 95/327 (29%), Gaps = 56/327 (17%)

Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-------------GGQW---LYDPNT 57
            V VIGAG  GL  A  + +  H V+                      G W   L DPN 
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNN 61

Query: 58  DQTEVHSSV-YASLR--LTSP-------REIMGYTDFPFVLKKGRDVRRFPGHKELWLYL 107
            Q    S   +  L   + SP         I GY  F   +          G ++L    
Sbjct: 62  PQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRE 121

Query: 108 KDFCQRFG---LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD 164
            D    +G       +    +  Y+  L       G    +  V+S     ++V  E  D
Sbjct: 122 LDMFPDYGYGWFHTSLILEGKN-YLQWLTERLTERGVKFFQRKVES----FEEVAREGAD 176

Query: 165 AVVVATGHYS---------YP--------RLPSIKGM--DKWKRKQMHSHIYRVPEPFRN 205
            +V  TG ++          P          P +K         + +++  Y +P     
Sbjct: 177 VIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIP---GT 233

Query: 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLRE 265
           + V + G    G    +  ++    +      L  +   +++I +            L  
Sbjct: 234 QTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLER 293

Query: 266 DGRVTFVDGCWVTADTILYCTGYSYSF 292
           +   T      V  +      G +  +
Sbjct: 294 EQLRTGPSNTEVIHNYGHGGYGLTIHW 320

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLE 42
             K V V+G+G  GL +A  L ++G+ V +L 
Sbjct: 4  HSQKRVVVLGSGVIGLSSALILARKGYSVHILA 36

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/44 (45%), Positives = 25/44 (56%)

Query: 1  MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
          M    H       +V V+GAGP+GL+ A ELR  G  V+VLEQ 
Sbjct: 1  MAHHHHHHHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQL 44

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          V V+GAGP+G++ A ELR  G  VVVLE+  +  G+
Sbjct: 14 VIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGE 49

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 16/125 (12%), Positives = 40/125 (32%), Gaps = 13/125 (10%)

Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW--LYDPNTDQTEVHSSVYASLR 71
           +V V+G G +  + +  +   G +V+ +++N   GG+   +                   
Sbjct: 8   DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPET 67

Query: 72  LTSPREIMGYTDFPFVLKKGRDVR-----------RFPGHKELWLYLKDFCQRFGLREMI 120
           +   R+        F++  G+ V+            F   +  ++Y      +    E  
Sbjct: 68  MGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETE 127

Query: 121 RFNTR 125
              + 
Sbjct: 128 ALASN 132

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
          V V+GAG  GL  A  L ++G RV+V+E+ 
Sbjct: 8  VLVVGAGLGGLSTAMFLARQGVRVLVVERR 37

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 40/311 (12%), Positives = 88/311 (28%), Gaps = 86/311 (27%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V +IG   +GL AA +L +    +++++       ++        +  H   +      +
Sbjct: 5   VIIIGGSYAGLSAALQLGRARKNILLVDAGE-RRNRF-----A--SHSHG--FLGQDGKA 54

Query: 75  PREIMGYTDFPFVLKKGRD-VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
           P EI+          + R  + R+P                           + +V    
Sbjct: 55  PGEII---------AEARRQIERYPT--------------------------IHWVE--- 76

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVE----EVFDA--VVVATGHYSYPRLPSIKGMDK- 186
            G           V  +K    + +VE        A  +++A G      LP I G+ + 
Sbjct: 77  -GR----------VTDAKGSFGEFIVEIDGGRRETAGRLILAMG--VTDELPEIAGLRER 123

Query: 187 WKRKQMHSHIYRV--------PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238
           W           V         E      + V+  S      ++ L +  +    +   +
Sbjct: 124 WGS--------AVFHCPYCHGYE-LDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIV 174

Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTK 298
                   +++         +I  +     V   DG  +    +        +  +++  
Sbjct: 175 EPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKL 234

Query: 299 GIVVVDDDRVG 309
           G  V +     
Sbjct: 235 GCAVEEGPMGS 245

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           V V+G+G +G  AA      G +V+++E+   +GG
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          V V G G +G+ A+ E  + G  V+VLE+    GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
          V V+G GP GL+ A ELR  G   +VLE+ 
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVLEKL 81

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
          V ++G GP G+  A +L       +V+EQ 
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQT 58

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 50/300 (16%), Positives = 91/300 (30%), Gaps = 85/300 (28%)

Query: 15  VCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRL 72
           V V+G   +G  A ++         V   E N ++                S  + S  +
Sbjct: 3   VIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI----------------S--FLSCGI 44

Query: 73  TSPREIMGYTDFPFVLK---KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
                          L    K  D R       L+    +     G    ++   +V  V
Sbjct: 45  ------------ALYLGKEIKNNDPRG------LFYSSPEELSNLGAN--VQMRHQVTNV 84

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKR 189
                       D     +K K+   ++   E +D +++ TG  S P +P I G+D  + 
Sbjct: 85  ------------DPETKTIKVKDLITNEEKTEAYDKLIMTTG--SKPTVPPIPGIDSSRV 130

Query: 190 KQMHS-----HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVA----KEV-------HL 233
               +      ++      +   + ++G       I  EL E        V        +
Sbjct: 131 YLCKNYNDAKKLFEEAPKAKT--ITIIG----SGYIGAELAEAYSNQNYNVNLIDGHERV 184

Query: 234 SAKSL--NISEGLSKVISKHN-NLHLHPQIDCLR-EDGRVTFV--DGCWVTADTILYCTG 287
             K      ++ L+K    H  NL L  ++      D  +     DG  + +D  + C G
Sbjct: 185 LYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIG 244

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQN---HDVGGQW 51
          V V+G GP GL  A ++ + GHRV+VLE++   ++ GG  
Sbjct: 7  VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTS 46

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 15 VCVIGAGPSGLVAAREL-RKEGHRVVVLEQN 44
          V ++G GP+GL  A +L      R  ++EQ 
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTCIVEQK 65

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQ 43
          ++  ++ + GAG  GL  A  L + G  +V +LE 
Sbjct: 2  SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLES 36

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          + +IG+G  G  A     + G  V++ +  H    Q
Sbjct: 5  LIIIGSGSVGAAAGYYATRAGLNVLMTDA-HMPPHQ 39

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 13 KNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGG 49
            +CV+G+GP+G   A+ L K      V + E+     G
Sbjct: 7  PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 26/155 (16%)

Query: 153 KKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHS-----HIYRVPEPFRNEV 207
           ++        +D +V A G  + P++P+I+G++               I    E ++ E 
Sbjct: 93  RENGGEKSYEWDYLVFANG--ASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVEN 150

Query: 208 VVVVGNSLSGQDISMELVEVAKE-------VHLSAKSLN------ISEGLSKVISKHNNL 254
           VV++G    G  I +E+ E           +    + L       +++ L + + KH NL
Sbjct: 151 VVIIG----GGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNL 206

Query: 255 HLHPQIDCLREDGRVTFV--DGCWVTADTILYCTG 287
            L      +  + RV  V  D     A+ ++  TG
Sbjct: 207 RLQEITMKIEGEERVEKVVTDAGEYKAELVILATG 241

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW-LYDPNTDQTEVHSSVYASLRLT 73
           V ++G G    + +  L   G +++VL++N   GG+    +                +  
Sbjct: 23  VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYG 82

Query: 74  SPREIMGYTDFPFVLKKGRDVRRF 97
             R         F+L  G  V+  
Sbjct: 83  ENRHWNVDLIPKFILVGGNLVKIL 106

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
          ++K   VIG G  G    +EL + GH V+ ++ N + 
Sbjct: 5  KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK 41

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 63/361 (17%), Positives = 110/361 (30%), Gaps = 126/361 (34%)

Query: 17  VIGAGPSGLVAAREL-RKEGHRVVVLEQNHD--------VGGQWLYDPNTDQTEVH---- 63
           VIGAG  GL A        G RV V++            +GG          T V+    
Sbjct: 12  VIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGG----------TCVNVGCV 61

Query: 64  ---SSVYASLRLTSPREIMGY------TDFPF---VLKKGRD--VRRFPGHKEL-WLYLK 108
                V  +  +   RE  G+      +        L   ++  V        +   Y  
Sbjct: 62  PKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLD------INKSY-- 113

Query: 109 DFCQRFGLREMIRFNTRVEYV-GM---LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD 164
                    +       +++  G         +++           +  +AD        
Sbjct: 114 ----EGMFND----TEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADH------- 158

Query: 165 AVVVATGHYSYPRLPSIKGMDKWKRKQMHS-------HIYRVPEPFRNEVVVVVGNSLSG 217
            +++ATG  S+P++P+I G++       H        ++   P       V+ VG     
Sbjct: 159 -ILLATG--SWPQMPAIPGIE-------HCISSNEAFYLPEPPRR-----VLTVGGGF-- 201

Query: 218 QDISME-------LVEVAKEVHL---SAKSLN-----ISEGLSKVISKHN-NLHLHPQID 261
             IS+E             +V L   +   L      I E ++K ++ +   +  +    
Sbjct: 202 --ISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPA 259

Query: 262 CLR--EDG--RVTFVDGCWVTADTILYCTGYSYSFPF------------LDTKGIVVVDD 305
            +    DG   VTF  G  +  D ++   G     P             L  KG V VD+
Sbjct: 260 KVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI---PRTNDLQLGNVGVKLTPKGGVQVDE 316

Query: 306 D 306
            
Sbjct: 317 F 317

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 15 VCVIGAGPSGLVAARELRKEGH-------RVVVLEQNHDVGG 49
          + ++G+GPS   AA  L K           V +LE      G
Sbjct: 6  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 47

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 39/297 (13%), Positives = 84/297 (28%), Gaps = 78/297 (26%)

Query: 12  SKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
           S  + +IGA  +G+ AA   RK      + ++++   V                   Y S
Sbjct: 2   SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV----------------G--YLS 43

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
             L                     +       E     ++  +R  ++  +  N  V  +
Sbjct: 44  GGL------------SAYF--NHTI---NELHEARYITEEELRRQKIQ--LLLNREVVAM 84

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKR 189
                       D+   ++    K+  +     +D +++ATG  +      I+G    K 
Sbjct: 85  ------------DVENQLIAWTRKEEQQ--WYSYDKLILATG--ASQFSTQIRGSQTEKL 128

Query: 190 KQMHS--HIYRVPEPFRN-EVVVVVGNSLSGQDISMELVEVAKE-------VHLSAKSLN 239
            +               N + V V+G       I ME ++   +              L 
Sbjct: 129 LKYKFLSGALAAVPLLENSQTVAVIG----AGPIGMEAIDFLVKMKKTVHVFESLENLLP 184

Query: 240 ------ISEGLSKVISKHN-NLHLHPQIDCLREDGRVTFV--DGCWVTADTILYCTG 287
                 +   + K + K     H    +  + E      +      ++ D+ ++   
Sbjct: 185 KYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIFALN 241

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
               VIG+  +G+   REL   G +V+ ++++ + 
Sbjct: 6  RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEK 41

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 55/361 (15%), Positives = 98/361 (27%), Gaps = 126/361 (34%)

Query: 17  VIGAGPSGLVAAREL-RKEGHRVVVLEQNHD--------VGGQWLYDPNTDQTEVH---- 63
           VIGAG  GL A          RV V++            +GG          T V+    
Sbjct: 8   VIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGG----------TCVNVGCV 57

Query: 64  ---SSVYASLRLTSPREIMGY------TDFPF---VLKKGRD--VRRFPGHKEL-WLYLK 108
                V  +  + + RE  G+               L   ++  V        +   Y  
Sbjct: 58  PKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSG------INDSY-- 109

Query: 109 DFCQRFGLREMIRFNTRVEYV-GM---LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD 164
                    +       + +  G     D   +++           +    +        
Sbjct: 110 ----EGMFAD----TEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEY------- 154

Query: 165 AVVVATGHYSYPRLPSIKGMDKWKRKQMHS-------HIYRVPEPFRNEVVVVVGNSLSG 217
            +++ATG  S+P+   I+G D                ++   P+       + VG     
Sbjct: 155 -ILLATG--SWPQHLGIEGDD-------LCITSNEAFYLDEAPKR-----ALCVGGGY-- 197

Query: 218 QDISME-------LVEVAKEVHL---SAKSLN-----ISEGLSKVISKHN-NLHLHPQID 261
             IS+E             +V L       L      + + L++ +  +  N+  H    
Sbjct: 198 --ISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPA 255

Query: 262 CL--REDG--RVTFVDGCWVTADTILYCTGYSYSFPF------------LDTKGIVVVDD 305
            +    DG   V F  G     D ++   G     P             +   G + VD 
Sbjct: 256 KVTKNADGTRHVVFESGAEADYDVVMLAIGRV---PRSQTLQLEKAGVEVAKNGAIKVDA 312

Query: 306 D 306
            
Sbjct: 313 Y 313

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Length = 153

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
          V G     +    +L + G  V V+    +
Sbjct: 8  VCGHSILAINTILQLNQRGQNVTVISNLPE 37

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
          ++K V V+G   SG  AAR L K G  V V +  
Sbjct: 8  ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGK 41

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
          V V+GAG  G+ A  +L K+G + ++++   
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 61/345 (17%), Positives = 103/345 (29%), Gaps = 118/345 (34%)

Query: 17  VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-------SSVYAS 69
            IG G  G+ +       G +  ++E    +GG          T V+          +A+
Sbjct: 9   AIGGGSGGIASINRAAMYGQKCALIEAKE-LGG----------TCVNVGCVPKKVMWHAA 57

Query: 70  LRLTSPREI---MGYT------DFPFVLKKGRD--VRRFPGHKEL-WLYLKDFCQRFGLR 117
               +        G+       ++   L   R   + R      +   Y         L 
Sbjct: 58  QIREAIHMYGPDYGFDTTINKFNWE-TLIASRTAYIDR------IHTSY------ENVLG 104

Query: 118 EMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPR 177
                   V+ +         +    ++  V  +   AD         +++ATG    P 
Sbjct: 105 -----KNNVDVIKGF--ARF-VDAKTLE--VNGETITADH--------ILIATG--GRPS 144

Query: 178 LPSIKGMDKWKRKQMHS-------HIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK- 229
            P I G++       +         +  +PE      V VVG       I +EL  V   
Sbjct: 145 HPDIPGVE-------YGIDSDGFFALPALPER-----VAVVGAGY----IGVELGGVING 188

Query: 230 ---EVHL---SAKSLN-----ISEGLSKVISKHN-NLHLHPQIDCL--REDG--RVTFVD 273
              + HL       L      ISE L +V++     LH +     +    DG   +   D
Sbjct: 189 LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELED 248

Query: 274 GCWVTADTILYCTGYSYSFPF------------LDTKGIVVVDDD 306
           G   T D +++  G     P              + KG +VVD  
Sbjct: 249 GRSETVDCLIWAIGRE---PANDNINLEAAGVKTNEKGYIVVDKY 290

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVV 40
          Q KNV +IG G +GL         G    V
Sbjct: 4  QGKNVVIIGLGLTGLSCVDFFLARGVTPRV 33

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 15 VCVIGAGPSGLVAARELRK--EGHRVVVLEQN 44
          + VIGAG  G   A  LR+   G  ++++E+ 
Sbjct: 39 IVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	100.0
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	100.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.98
4dna_A	463	Probable glutathione reductase; structural genomic	99.98
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.98
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.98
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.98
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.98
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.98
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.97
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.97
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.97
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.97
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.97
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.97
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.97
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.97
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.97
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.96
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.96
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.96
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.95
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.95
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.95
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.95
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.95
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.94
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.93
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.93
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.92
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.92
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.91
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.61
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.58
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.51
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.45
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.39
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.32
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.28
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.25
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.25
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.24
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.24
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.24
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.19
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.19
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.19
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.17
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.16
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.15
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.15
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.14
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.14
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.13
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.13
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.12
3dme_A	369	Conserved exported protein; structural genomics, P	99.11
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.11
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.11
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.11
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.09
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.09
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.08
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.06
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.05
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.04
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.04
3atr_A	453	Conserved archaeal protein; saturating double bond	99.03
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.03
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.99
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.99
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.99
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.99
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.98
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.96
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.93
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.92
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.92
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.91
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.88
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.87
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.86
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.83
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.83
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.82
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.81
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.8
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.79
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.79
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.78
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.75
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.75
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.73
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.72
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.72
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.72
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.7
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.7
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.69
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.69
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.68
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.67
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.67
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.66
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.66
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.65
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.65
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.64
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.64
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.63
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.62
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.62
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.62
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.6
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.59
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.59
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.57
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.56
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.56
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.55
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.55
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.54
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.54
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.54
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.53
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.52
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.52
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.52
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.52
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.52
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.52
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.51
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.51
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.5
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.5
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.49
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.48
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.48
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.48
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.47
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.47
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.47
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.47
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.46
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.46
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.45
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.45
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.45
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.45
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.43
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.43
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.43
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.41
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.41
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.41
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.39
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.39
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.39
4dna_A	463	Probable glutathione reductase; structural genomic	98.39
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.38
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.35
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.35
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.35
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.35
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.34
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.33
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.33
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.31
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.29
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.27
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.27
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.27
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.27
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.25
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.25
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.24
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.23
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.23
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.23
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.2
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.2
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.2
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.2
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.19
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.18
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.18
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.17
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.17
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.16
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.16
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.16
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.16
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.15
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.14
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.12
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.1
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.09
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.08
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.07
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.06
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.05
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.99
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.99
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.99
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.98
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.91
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.88
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.88
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.86
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.84
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.83
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.82
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.82
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.79
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.76
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.75
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.74
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.73
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.73
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.7
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.68
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.67
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.66
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.64
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.6
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.59
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.56
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.55
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.47
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.46
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.46
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.45
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.45
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.42
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.36
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.36
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.35
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.34
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.34
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.27
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.24
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.23
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.23
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.22
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.14
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.1
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.09
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.09
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.08
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.05
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.03
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.03
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.99
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.97
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.97
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.97
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	96.93
3dme_A	369	Conserved exported protein; structural genomics, P	96.92
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.91
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.87
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.85
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.8
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.75
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	96.74
3atr_A	453	Conserved archaeal protein; saturating double bond	96.74
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.73
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	96.67
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.61
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.57
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.57
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.56
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.54
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.53
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	96.51
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.49
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	96.48
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.41
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.3
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.2
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.08
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.08
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.07
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.03
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	95.99
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.96
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	95.89
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.88
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.88
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.74
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.66
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.52
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.24
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.17
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.14
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.09
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.06
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.92
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.81
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.69
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.6
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.57
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.46
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.44
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.39
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.19
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.16
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.12
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.12
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.09
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	94.06
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.05
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.98
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.93
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.81
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.8
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.72
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.71
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.65
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.59
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.55
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.48
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.48
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.44
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.37
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	93.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.27
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.27
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.27
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.26
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.26
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.25
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.21
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.19
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.18
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.08
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.08
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.07
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.06
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.05
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	92.99
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.94
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	92.93
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.92
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.89
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.71
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.68
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.68
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.67
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.61
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.61
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.59
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	92.58
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.56
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.53
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.51
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.48
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.45
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	92.4
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.37
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.34
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	92.33
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	92.28
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.27
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.27
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.25
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.24
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	92.23
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.22
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.15
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.14
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.14
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.11
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	92.1
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	92.06
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.05
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.04
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	92.03
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.01
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.99
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.99
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.95
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.95
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.81
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.81
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.79
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	91.78
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	91.75
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.73
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.71
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.7
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	91.67
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	91.66
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.65
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.56
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.5
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.49
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.48
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	91.46
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	91.44
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	91.43
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	91.42
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	91.41
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	91.41
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	91.39
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	91.39
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.35
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	91.35
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	91.34
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	91.34
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	91.33
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	91.32
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	91.3
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.29
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.28
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	91.27
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	91.26
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	91.26
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	91.25
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.25
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	91.25
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.21
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	91.14
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.06
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.02
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.02

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=5.2e-59  Score=469.47  Aligned_cols=398  Identities=26%  Similarity=0.481  Sum_probs=337.5

Q ss_pred             CcEEEECcChHHHHHHHHHHH---cCCc---EEEEeeCCCCCcccccCCCCCCC----CccccccccceecCCccccccC
Q 044575           13 KNVCVIGAGPSGLVAARELRK---EGHR---VVVLEQNHDVGGQWLYDPNTDQT----EVHSSVYASLRLTSPREIMGYT   82 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~---~g~~---v~vie~~~~~GG~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +||+|||||+||++||+.|++   .|.+   |+|||+++.+||+|.+.......    ...+.+|..+..+.++..+.|+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            689999999999999999999   9999   99999999999999986433211    3456789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV  162 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (454)
                      +++++...+...+.|+++.++.+|+.++++++++..+++++++|++|+..++.+        .|+|++.++.++...++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~--------~~~V~~~~~~~g~~~~~~  154 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQ--------TFTVTVQDHTTDTIYSEE  154 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTT--------EEEEEEEETTTTEEEEEE
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCC--------cEEEEEEEcCCCceEEEE
Confidence            998875322244788999999999999999999988899999999999875432        799998875334445789


Q ss_pred             eCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      ||+||+|||+++.|++|.+||++.|.+.++|++.++.+..+.+|+|+|||+|.||+|+|.+|++.+++|+++.|++.+.+
T Consensus       155 ~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~  234 (464)
T 2xve_A          155 FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG  234 (464)
T ss_dssp             ESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCC
T ss_pred             cCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCC
Confidence            99999999999999999999999999999999999988888999999999999999999999999999999999876533


Q ss_pred             cchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCCceeeCCC-CcccccCcccCCCCC
Q 044575          243 GLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDD-RVGPLYEHTFPPSLA  321 (454)
Q Consensus       243 ~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~-~~~~~~~~~~~~~~~  321 (454)
                      ..   +.  .++...+.|+++.++ .|+|.||+++++|.||+|||++|+++||++...+.+++. .+.++|++++.+. .
T Consensus       235 ~~---~~--~~V~~~~~V~~i~~~-~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~-~  307 (464)
T 2xve_A          235 YK---WP--ENWDERPNLVRVDTE-NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED-N  307 (464)
T ss_dssp             CC---CC--TTEEECSCEEEECSS-EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTTEESS-S
T ss_pred             CC---CC--CceEEcCCeEEEeCC-EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceEecCC-C
Confidence            21   11  245555889999765 599999999999999999999999999986444666665 4457899888864 7


Q ss_pred             CCceEecccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCC--CCCcccccccHHHHHHHHHHc
Q 044575          322 PSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGI--PKHNTHDIANFEYCDRYADQI  399 (454)
Q Consensus       322 p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~l~~~~  399 (454)
                      |+|||+|++.....++.|+.||+|+|++|+|+..||+.++|++++..+.+.  ..++  +.++.|.  ++.|+|+|++++
T Consensus       308 p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~~~~~~--~~~~~~~~~~~~~--~~~Y~~~l~~~~  383 (464)
T 2xve_A          308 PKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREK--ELTLVTAEEMYTY--QGDYIQNLIDMT  383 (464)
T ss_dssp             TTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH--HHTCCSHHHHHHH--HHHHHHHHHTTS
T ss_pred             CCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHH--hhccCCCCCcccc--HHHHHHHHHHHc
Confidence            999999999887788999999999999999999999999999999887662  3344  2344443  579999999999


Q ss_pred             CCCCc-hHHHHHHHHHHhhCCccccccccCC
Q 044575          400 GFPHL-EEWRKGLCISALVNSDANLETYRDS  429 (454)
Q Consensus       400 g~~~~-~~~~~~l~~~~~~~~~~~~~~~r~~  429 (454)
                      |++++ ++|+++++..+...+..++..||+.
T Consensus       384 g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  414 (464)
T 2xve_A          384 DYPSFDIPATNKTFLEWKHHKKENIMTFRDH  414 (464)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHCTTTGGGC
T ss_pred             CCCCCChHHHHHHHHHHHHHHHhchhhhccc
Confidence            99988 7789999999998888999999987

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=100.00  E-value=4e-53  Score=425.63  Aligned_cols=364  Identities=32%  Similarity=0.549  Sum_probs=303.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCC----------------------CCccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQ----------------------TEVHSSV   66 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~----------------------~~~~~~~   66 (454)
                      ..+||+|||||++|+++|+.|++.|.  +|+|||+++.+||.|.+..+...                      ....+.+
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35899999999999999999999999  99999999999999998765321                      0113577


Q ss_pred             cccceecCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcE
Q 044575           67 YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKW  146 (454)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~  146 (454)
                      |..+..+.++..+.|++++++.    ..+.|+++.++.+|+.+++++++..  ++++++|++|+..++          .|
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~--i~~~t~V~~v~~~~~----------~~  148 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKP----QTLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKDG----------SW  148 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCT----TCCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEETT----------EE
T ss_pred             hhhhccCCCHHHhccCCCCCCC----CCCCCCCHHHHHHHHHHHHHHhhCe--EEeCCEEEEEEeCCC----------eE
Confidence            8889999999999999999887    6778999999999999999988554  899999999987542          79


Q ss_pred             EEEEeecCCCe-EEEEEeCEEEEccCCCCCCCCCCCCCcCCc----cceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHH
Q 044575          147 VVKSKEKKADK-VVEEVFDAVVVATGHYSYPRLPSIKGMDKW----KRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDIS  221 (454)
Q Consensus       147 ~v~~~~~~~~~-~~~~~~d~vViAtG~~~~p~~p~i~G~~~~----~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A  221 (454)
                      +|++.+..++. ..++.||+||+|||+++.|++|.+||++.+    .+.++|++.++++..+++++|+|||+|.||+|+|
T Consensus       149 ~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A  228 (447)
T 2gv8_A          149 VVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLV  228 (447)
T ss_dssp             EEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHH
T ss_pred             EEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHH
Confidence            99987632233 346899999999998889999999998764    5678999999988888999999999999999999


Q ss_pred             HHHhhhcCe-EEEecccCCcCccchhhhccCCCeEEcCceeEEecC-CcEEEeCCCE-EeeceEEEccCcccCCcC----
Q 044575          222 MELVEVAKE-VHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLRED-GRVTFVDGCW-VTADTILYCTGYSYSFPF----  294 (454)
Q Consensus       222 ~~l~~~~~~-V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~-~~v~~~dG~~-i~~D~vI~atG~~~~~~~----  294 (454)
                      .+|++.+++ |+++.|++.+       + ...++...+.|+++..+ +.|+|.||++ +++|.||+||||+|+++|    
T Consensus       229 ~~l~~~~~~~V~l~~r~~~~-------l-~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~  300 (447)
T 2gv8_A          229 RHLTPVAKHPIYQSLLGGGD-------I-QNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLA  300 (447)
T ss_dssp             HHHTTTSCSSEEEECTTCCS-------C-BCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHH
T ss_pred             HHHHHHhCCcEEEEeCCCCc-------C-CCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCccc
Confidence            999999999 9999998765       1 22356678899999633 4799999987 689999999999999999    


Q ss_pred             -CCC-CCceeeCCCCcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhh
Q 044575          295 -LDT-KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHS  372 (454)
Q Consensus       295 -l~~-~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~  372 (454)
                       |+. .+.+.+|++...++|+++|++ .+|++||+|++.....++.|+.||+|+|++|+|+.+||+.++|++++.+..+.
T Consensus       301 ~l~~~~~~i~~~~~~~~~~~~~v~~~-~~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~~~m~~~~~~~~~~  379 (447)
T 2gv8_A          301 KLKSPETKLIDDGSHVHNVYQHIFYI-PDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFS  379 (447)
T ss_dssp             SCCSTTTCCCSSSSSCCSEETTTEET-TCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccCceecCCCcccccccccccC-CCCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHH
Confidence             875 345667777777899999986 47999999999987788999999999999999999999999999998876543


Q ss_pred             hhhcCCCCCccccc---ccHHHHHHHHHHcCCC
Q 044575          373 RDVAGIPKHNTHDI---ANFEYCDRYADQIGFP  402 (454)
Q Consensus       373 ~~~~~~~~~~~~~~---~~~~y~~~l~~~~g~~  402 (454)
                      +  .+.+ +..|.+   .+..|+++|+..++..
T Consensus       380 ~--~~~~-~~~~~~~~~~~~~y~~~l~~~~~~~  409 (447)
T 2gv8_A          380 L--SGAN-NMYHSLDYPKDATYINKLHDWCKQA  409 (447)
T ss_dssp             H--TTCG-GGTTBCTTTHHHHHHHHHHHHHHTC
T ss_pred             h--cCCC-cceeecCCccHHHHHHHHHHHhCcc
Confidence            2  1222 222443   3579999999977653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=2e-40  Score=322.95  Aligned_cols=299  Identities=25%  Similarity=0.360  Sum_probs=240.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||.|.+            .|+.+..+.+...+.+++++++.   
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~------------~~~~~~~~~~~~~~~~~~~~~~~---   67 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH------------AWHSLHLFSPAGWSSIPGWPMPA---   67 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG------------SCTTCBCSSCGGGSCCSSSCCCC---
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC------------CCCCcEecCchhhhhCCCCCCCC---
Confidence            379999999999999999999999999999999999999984            35666677777778888877775   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                       ....|+++.++.+|+.++++++++.  ++++++|++++..++          .|. |++.++      ++.||+||+||
T Consensus        68 -~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~----------~~~~v~~~~g------~~~~d~vV~At  128 (357)
T 4a9w_A           68 -SQGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHFGE----------RLRVVARDGR------QWLARAVISAT  128 (357)
T ss_dssp             -CSSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEETT----------EEEEEETTSC------EEEEEEEEECC
T ss_pred             -CccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEECCC----------cEEEEEeCCC------EEEeCEEEECC
Confidence             6778899999999999999999988  999999999987643          677 765442      78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC-CcCccc-----
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL-NISEGL-----  244 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~-~~~~~~-----  244 (454)
                      |.++.|.+|.+||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|.+|++.+ +|+++.|++ .+.+..     
T Consensus       129 G~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~  207 (357)
T 4a9w_A          129 GTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRV  207 (357)
T ss_dssp             CSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHH
T ss_pred             CCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCcc
Confidence            9878899999999999999999999998888888999999999999999999999998 699999874 432211     


Q ss_pred             -----hhhhc----------------------------cCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccC
Q 044575          245 -----SKVIS----------------------------KHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       245 -----~~~l~----------------------------~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                           .+.+.                            +.+.+.....++++..+ .|.+.||+++++|.||+|||++|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~  286 (357)
T 4a9w_A          208 LFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPT-GMQWADGTERAFDAVIWCTGFRPA  286 (357)
T ss_dssp             HHTC----------------------CBCCCHHHHHHHHTTCCCEECCCSEEETT-EEECTTSCEEECSEEEECCCBCCC
T ss_pred             HHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCceEEecCcceEeCC-eeEECCCCEecCCEEEECCCcCCC
Confidence                 11111                            12235566777888765 499999999999999999999999


Q ss_pred             CcCCCCC------CceeeCCCCcccccCcccCCCCCCCceEec--cccc--ccchhHHHHHHHHHHHHHcCCC
Q 044575          292 FPFLDTK------GIVVVDDDRVGPLYEHTFPPSLAPSLSFVG--IPRK--LIGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       292 ~~~l~~~------g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG--~~~~--~~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      ++++...      |.+.+|+..       ... ++.|++|++|  ++..  ......|..||+.+|+++...+
T Consensus       287 ~~~l~~~gl~~~~G~i~vd~~~-------l~~-t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l  351 (357)
T 4a9w_A          287 LSHLKGLDLVTPQGQVEVDGSG-------LRA-LAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYC  351 (357)
T ss_dssp             CGGGTTTTCBCTTSCBCBCTTS-------CBB-SSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHT
T ss_pred             CcccCcccccCCCCCccccCCc-------ccC-CCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence            9988653      334444430       122 4579999999  4443  2345678999999998876544

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=100.00  E-value=2.3e-39  Score=330.86  Aligned_cols=314  Identities=21%  Similarity=0.318  Sum_probs=240.4

Q ss_pred             CCcEEEECcChHHHHHHHHHH-HcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELR-KEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~-~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+|||||+||+++|..|+ +.|.+|+|||+++.+||+|...           .|+......+...+.++..+.....
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~-----------~ypg~~~d~~s~~~~~~~~~~~~~~   76 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN-----------RYPGALSDTESHLYRFSFDRDLLQE   76 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC-----------CCTTCEEEEEGGGSSCCSCHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc-----------CCCCceecCCcceeeeccccccccC
Confidence            479999999999999999999 8899999999999999999854           3455555555555554411000000


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                      ......|+++.++.+|+.++++++++...++++++|++++..++..        .|+|++.++.     ++.||+||+||
T Consensus        77 ~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~--------~~~V~~~~G~-----~i~ad~lV~At  143 (540)
T 3gwf_A           77 STWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDEN--------LWEVTTDHGE-----VYRAKYVVNAV  143 (540)
T ss_dssp             CCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTT--------EEEEEETTSC-----EEEEEEEEECC
T ss_pred             CCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCC--------EEEEEEcCCC-----EEEeCEEEECC
Confidence            0133467889999999999999999977799999999999876532        8999987764     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Cc----cch
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SE----GLS  245 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~----~~~  245 (454)
                      |.++.|+.|++||++.|.+..+|+..+.....+.+|+|+|||+|.||+|+|.+|++.+++|+++.|++.+ .+    .+.
T Consensus       144 G~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~  223 (540)
T 3gwf_A          144 GLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVN  223 (540)
T ss_dssp             CSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCC
T ss_pred             cccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCC
Confidence            9888999999999999999999999988877889999999999999999999999999999999999884 10    000


Q ss_pred             ----hhhc------------------------------------------------------------------------
Q 044575          246 ----KVIS------------------------------------------------------------------------  249 (454)
Q Consensus       246 ----~~l~------------------------------------------------------------------------  249 (454)
                          +.+.                                                                        
T Consensus       224 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  303 (540)
T 3gwf_A          224 PEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFI  303 (540)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence                0000                                                                        


Q ss_pred             -------------------------------------cCCCeEE----cCceeEEecCCcEEEeCCCEEeeceEEEccCc
Q 044575          250 -------------------------------------KHNNLHL----HPQIDCLREDGRVTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       250 -------------------------------------~~~~i~~----~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~  288 (454)
                                                           +..++.+    ...|+++++++ |++.||+++++|+||+||||
T Consensus       304 ~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g-v~~~dG~~~~~DvIV~ATGf  382 (540)
T 3gwf_A          304 RAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG-VVTEDGVLHELDVLVFATGF  382 (540)
T ss_dssp             HHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE-EEETTCCEEECSEEEECCCB
T ss_pred             HHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe-EEcCCCCEEECCEEEECCcc
Confidence                                                 0112322    47889998775 99999999999999999999


Q ss_pred             ccCCcCCCC-----CCceeeCC--CCcccccCcccCCCCCCCceEeccccc--ccchhHHHHHHHHHHHHHc
Q 044575          289 SYSFPFLDT-----KGIVVVDD--DRVGPLYEHTFPPSLAPSLSFVGIPRK--LIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       289 ~~~~~~l~~-----~g~i~v~~--~~~~~~~~~~~~~~~~p~l~~iG~~~~--~~~~~~a~~qa~~~a~~i~  351 (454)
                      .++..++..     .+.+.+++  ......|..+..+ +.||+|++.-|.+  ......+|.|++|+++.|.
T Consensus       383 ~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~v~-gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          383 DAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTA-NFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             SCSSHHHHTSEEECGGGCBHHHHTSSSCCCBTTTBCT-TCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHH
T ss_pred             CccccCcCcceEECCCCcCHHHhhccChhhccccccC-CCCceEEEecCCCCCccHHHHHHHHHHHHHHHHH
Confidence            998644432     12223332  1122467777765 4799999954442  2334799999999998874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=100.00  E-value=1.7e-38  Score=324.85  Aligned_cols=314  Identities=26%  Similarity=0.375  Sum_probs=235.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+|||||+||+++|..|++.|.+|+|||+++.+||+|...           .|+......+...+.++..|.....
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~-----------~yPg~~~d~~~~~y~~~f~~~~~~~   76 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-----------RYPGCRLDTESYAYGYFALKGIIPE   76 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----------CCTTCBCSSCHHHHCHHHHTTSSTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-----------CCCceeecCchhhcccccCcccccC
Confidence            45799999999999999999999999999999999999999753           3444444444444444321111000


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                      ......|+++.++.+|+++.++++++..+++++++|++++..++..        .|+|++.++.     ++.||+||+||
T Consensus        77 ~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~--------~w~V~~~~G~-----~~~ad~lV~At  143 (545)
T 3uox_A           77 WEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDR--------LWEVTLDNEE-----VVTCRFLISAT  143 (545)
T ss_dssp             CCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGT--------EEEEEETTTE-----EEEEEEEEECC
T ss_pred             CCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCC--------EEEEEECCCC-----EEEeCEEEECc
Confidence            1144567899999999999999999987899999999999876432        8999987654     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Cc
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SE  242 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~  242 (454)
                      |.++.|+.|++||++.|.+..+|+..+...       .++.+|+|+|||+|.||+|+|.+|++.+++||++.|++.+ .+
T Consensus       144 G~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p  223 (545)
T 3uox_A          144 GPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTP  223 (545)
T ss_dssp             CSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEE
T ss_pred             CCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCcccc
Confidence            988899999999999999999999887665       6678999999999999999999999999999999999874 00


Q ss_pred             c------------ch-----------------------------------------------------------------
Q 044575          243 G------------LS-----------------------------------------------------------------  245 (454)
Q Consensus       243 ~------------~~-----------------------------------------------------------------  245 (454)
                      .            +.                                                                 
T Consensus       224 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (545)
T 3uox_A          224 LGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNK  303 (545)
T ss_dssp             CCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHH
T ss_pred             CCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHH
Confidence            0            00                                                                 


Q ss_pred             --------------------hhh-c-cC-------------------CCeEE----cCceeEEecCCcEEEeCCCEEeec
Q 044575          246 --------------------KVI-S-KH-------------------NNLHL----HPQIDCLREDGRVTFVDGCWVTAD  280 (454)
Q Consensus       246 --------------------~~l-~-~~-------------------~~i~~----~~~v~~v~~~~~v~~~dG~~i~~D  280 (454)
                                          +.+ . .+                   .++.+    ...|+++++++ |++.|| ++++|
T Consensus       304 ~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~g-v~~~dG-~~~~D  381 (545)
T 3uox_A          304 FLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEG-IKTADA-AYDLD  381 (545)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTE-EEESSC-EEECS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCe-EEeCCC-eeecC
Confidence                                000 0 01                   12322    57888998775 999999 99999


Q ss_pred             eEEEccCcccCCcCCCC-----CCceeeCC--CCcccccCcccCCCCCCCceEecccccc----cchhHHHHHHHHHHHH
Q 044575          281 TILYCTGYSYSFPFLDT-----KGIVVVDD--DRVGPLYEHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIAQL  349 (454)
Q Consensus       281 ~vI~atG~~~~~~~l~~-----~g~i~v~~--~~~~~~~~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a~~  349 (454)
                      +||+||||.+++.++..     .+...+++  ......|..+..+ +.||+|++.-|.++    .....+|.|++|++++
T Consensus       382 ~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~~~-gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~  460 (545)
T 3uox_A          382 VIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWAEGPSTYLGLQAR-GFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRM  460 (545)
T ss_dssp             EEEECCCCBSSSCSCTTSEEECGGGCBHHHHTTTSCCCBTTTBCT-TCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHH
T ss_pred             EEEECCccccccccCCCceEECCCCccHHHhhccccceeeccccC-CCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHH
Confidence            99999999987665542     11222221  1112356666665 47999999777643    2246899999999988


Q ss_pred             Hc
Q 044575          350 LS  351 (454)
Q Consensus       350 i~  351 (454)
                      |.
T Consensus       461 i~  462 (545)
T 3uox_A          461 IS  462 (545)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=100.00  E-value=1.5e-38  Score=325.55  Aligned_cols=314  Identities=25%  Similarity=0.353  Sum_probs=239.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+|||||+||+++|..|++.|++|+|||+++.+||+|...           .|+.....+|...+.++-.+.....
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~-----------~ypg~~~dv~s~~y~~~f~~~~~~~   88 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN-----------RYPGARCDVESIDYSYSFSPELEQE   88 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----------CCTTCBCSSCTTTSSCCSCHHHHHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-----------CCCCceeCCCchhcccccccccccC
Confidence            35799999999999999999999999999999999999999854           2444445555555544321100000


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                      ......|+++.++.+|+.++++++++..+++++++|++++..++..        .|+|++.++.     ++.||+||+||
T Consensus        89 ~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~--------~w~V~~~~G~-----~i~ad~lV~At  155 (549)
T 4ap3_A           89 WNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL--------RWTVRTDRGD-----EVSARFLVVAA  155 (549)
T ss_dssp             CCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTT--------EEEEEETTCC-----EEEEEEEEECC
T ss_pred             CCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCC--------EEEEEECCCC-----EEEeCEEEECc
Confidence            0144568899999999999999999977799999999999876543        8999987664     68999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Ccc-----
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYR-VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEG-----  243 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~-----  243 (454)
                      |.++.|+.|++||++.|.+..+|+..+. ...++.+|+|+|||+|.||+|+|.+|++.+++|+++.|++.+ .+.     
T Consensus       156 G~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~  235 (549)
T 4ap3_A          156 GPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPL  235 (549)
T ss_dssp             CSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----
T ss_pred             CCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCC
Confidence            9888999999999999999999999887 567789999999999999999999999999999999999874 000     


Q ss_pred             -------ch-----------------------------------------------------------------------
Q 044575          244 -------LS-----------------------------------------------------------------------  245 (454)
Q Consensus       244 -------~~-----------------------------------------------------------------------  245 (454)
                             +.                                                                       
T Consensus       236 ~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (549)
T 4ap3_A          236 DDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWE  315 (549)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHH
Confidence                   00                                                                       


Q ss_pred             -------------hhh-cc-C-------------------CCeEE----cCceeEEecCCcEEEeCCCEEeeceEEEccC
Q 044575          246 -------------KVI-SK-H-------------------NNLHL----HPQIDCLREDGRVTFVDGCWVTADTILYCTG  287 (454)
Q Consensus       246 -------------~~l-~~-~-------------------~~i~~----~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG  287 (454)
                                   +.+ .. +                   .++.+    ...|+++++++ |++.|| ++++|+||+|||
T Consensus       316 ~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g-v~~~dG-~~~~D~iI~ATG  393 (549)
T 4ap3_A          316 EKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG-IVTTGA-HYDLDMIVLATG  393 (549)
T ss_dssp             HHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE-EEESSC-EEECSEEEECCC
T ss_pred             HHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc-EEeCCC-ceecCEEEECCc
Confidence                         000 00 0                   12322    47788898775 999999 999999999999


Q ss_pred             cccCCcCCCC-----CCceeeCCC--CcccccCcccCCCCCCCceEecccccc----cchhHHHHHHHHHHHHHc
Q 044575          288 YSYSFPFLDT-----KGIVVVDDD--RVGPLYEHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       288 ~~~~~~~l~~-----~g~i~v~~~--~~~~~~~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a~~i~  351 (454)
                      +.++..++..     .+.+.+++.  .....|..+..+ +.||+|++.-|.++    .....+|.|++|+++.|.
T Consensus       394 f~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~~~-gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~  467 (549)
T 4ap3_A          394 FDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGID-GFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIA  467 (549)
T ss_dssp             EEESSTTGGGSEEECGGGCBHHHHTTTSCCCBTTTBCT-TCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCceeEECCCCcCHHHhhccchhhccccccC-CCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHH
Confidence            9998645432     122333321  112467777765 47999999766632    234699999999998874

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=7.6e-37  Score=299.49  Aligned_cols=311  Identities=19%  Similarity=0.290  Sum_probs=219.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+|||||++|+++|..|++.|. +|+|||+++ +||.|.+.+....  ..++.+       ....+.+.++......
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~--~~~~~~-------~~~~~g~~~~~~~~~~   73 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTR--TITPSF-------TSNGFGMPDMNAISMD   73 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCB--CSSCCC-------CCGGGTCCCTTCSSTT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccccc--ccCcch-------hcccCCchhhhhcccc
Confidence            4799999999999999999999999 999999988 9999986532110  000000       0111111111111000


Q ss_pred             C----CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           91 G----RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        91 ~----~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                      .    .....++.+.++..|+.++++++++.  ++++++|.+|+..++          .|.|.+.++      ++.||+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~g------~~~~d~v  135 (369)
T 3d1c_A           74 TSPAFTFNEEHISGETYAEYLQVVANHYELN--IFENTVVTNISADDA----------YYTIATTTE------TYHADYI  135 (369)
T ss_dssp             CCHHHHHCCSSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSS----------SEEEEESSC------CEEEEEE
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECCC----------eEEEEeCCC------EEEeCEE
Confidence            0    01234678889999999999999987  889999999987643          688876543      5789999


Q ss_pred             EEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc----
Q 044575          167 VVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE----  242 (454)
Q Consensus       167 ViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~----  242 (454)
                      |+|||++..|   .+|+     +..+|+..+.....+++++|+|||+|.+|+|+|..|++.+.+|++++|++.+.+    
T Consensus       136 VlAtG~~~~p---~ip~-----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d  207 (369)
T 3d1c_A          136 FVATGDYNFP---KKPF-----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDAD  207 (369)
T ss_dssp             EECCCSTTSB---CCCS-----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------
T ss_pred             EECCCCCCcc---CCCC-----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCC
Confidence            9999955444   4445     346788777777677889999999999999999999999999999999877542    


Q ss_pred             -----------cchhhhccC--CCeEEcCceeEEe--cCC-cEEEeCCCEEe-eceEEEccCcccCCcCCC------CCC
Q 044575          243 -----------GLSKVISKH--NNLHLHPQIDCLR--EDG-RVTFVDGCWVT-ADTILYCTGYSYSFPFLD------TKG  299 (454)
Q Consensus       243 -----------~~~~~l~~~--~~i~~~~~v~~v~--~~~-~v~~~dG~~i~-~D~vI~atG~~~~~~~l~------~~g  299 (454)
                                 .+.+.+.+.  .+++.+..|.++.  .++ .|.+.||+++. +|.||+|||++|+++++.      ++|
T Consensus       208 ~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g  287 (369)
T 3d1c_A          208 PSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQ  287 (369)
T ss_dssp             CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTS
T ss_pred             CCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCC
Confidence                       112223332  5677788899984  332 47788998776 699999999999985543      334


Q ss_pred             ceeeCCCCcccccCcccCCCCCCCceEecccccccc-----hhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 044575          300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-----FPFFESQAKWIAQLLSGKRTLPSWDQMMQSVK  367 (454)
Q Consensus       300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-----~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~  367 (454)
                      .+.+|+...        . +..|++|++|++.....     ...++.||+++|++|.|+..+|+.++|++...
T Consensus       288 ~i~v~~~~~--------~-t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~  351 (369)
T 3d1c_A          288 DIKLTTHDE--------S-TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQ  351 (369)
T ss_dssp             CCCBCTTSB--------B-SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CEEechhhc--------c-cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHH
Confidence            455554322        2 35699999999875321     24678899999999999999999876665443

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=100.00  E-value=1e-36  Score=312.98  Aligned_cols=314  Identities=24%  Similarity=0.371  Sum_probs=230.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+|||||++|+++|..|++.|++|+|||+++.+||+|...           .|+......+...+.++..+.....
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~-----------~~pg~~~d~~~~~~~~~f~~~~~~~   83 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-----------RYPGARCDIESIEYCYSFSEEVLQE   83 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----------CCTTCBCSSCTTTSSCCSCHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccc-----------CCCceeecccccccccccChhhhhc
Confidence            35799999999999999999999999999999999999999743           1233333333333333211100000


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                      ......|+++.++.+|++.+++++++...++++++|++++..++..        .|+|++.++.     ++.||+||+||
T Consensus        84 ~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~--------~w~V~~~~G~-----~~~ad~vV~At  150 (542)
T 1w4x_A           84 WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN--------TWTVDTNHGD-----RIRARYLIMAS  150 (542)
T ss_dssp             CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT--------EEEEEETTCC-----EEEEEEEEECC
T ss_pred             cCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCC--------eEEEEECCCC-----EEEeCEEEECc
Confidence            0023467889999999999999999877899999999999875432        7999887654     68999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC-cc----c
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYR-VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS-EG----L  244 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~-~~----~  244 (454)
                      |.++.|++|++||++.|.+..+|+..+. +..++.+|+|+|||+|.||+|+|..+++.+.+|+++.|++.+. +.    +
T Consensus       151 G~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~  230 (542)
T 1w4x_A          151 GQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPL  230 (542)
T ss_dssp             CSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBC
T ss_pred             CCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCC
Confidence            9988999999999999999999998886 4466789999999999999999999999999999999987651 10    0


Q ss_pred             h-------------------------------------------------------------------------------
Q 044575          245 S-------------------------------------------------------------------------------  245 (454)
Q Consensus       245 ~-------------------------------------------------------------------------------  245 (454)
                      .                                                                               
T Consensus       231 ~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  310 (542)
T 1w4x_A          231 DPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIR  310 (542)
T ss_dssp             CHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHH
Confidence            0                                                                               


Q ss_pred             -------------hhhc--cC-------------------CCeEE----cCceeEEecCCcEEEeCCCEEeeceEEEccC
Q 044575          246 -------------KVIS--KH-------------------NNLHL----HPQIDCLREDGRVTFVDGCWVTADTILYCTG  287 (454)
Q Consensus       246 -------------~~l~--~~-------------------~~i~~----~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG  287 (454)
                                   +.+.  .+                   .++.+    ...|+++++++ |++.| +++++|+||+|||
T Consensus       311 ~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g-v~~~d-~~~~~D~ii~atG  388 (542)
T 1w4x_A          311 NKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG-VRTSE-REYELDSLVLATG  388 (542)
T ss_dssp             HHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE-EEESS-CEEECSEEEECCC
T ss_pred             HHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe-EEeCC-eEEecCEEEEcCC
Confidence                         0000  00                   12322    56788887664 99999 9999999999999


Q ss_pred             cccCCcCCCC------CCceeeCCCC-cccccCcccCCCCCCCceEe-ccccc--ccch-hHHHHHHHHHHHHHc
Q 044575          288 YSYSFPFLDT------KGIVVVDDDR-VGPLYEHTFPPSLAPSLSFV-GIPRK--LIGF-PFFESQAKWIAQLLS  351 (454)
Q Consensus       288 ~~~~~~~l~~------~g~i~v~~~~-~~~~~~~~~~~~~~p~l~~i-G~~~~--~~~~-~~a~~qa~~~a~~i~  351 (454)
                      +.++.+++..      +|....+... ....|..+..+ +.||+|++ |....  ...+ +.++.|+++++++|.
T Consensus       389 ~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~~v~-~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~  462 (542)
T 1w4x_A          389 FDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTA-GFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA  462 (542)
T ss_dssp             CCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCT-TSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCceeeECCCCCCHHHhhcCchheecccccC-CCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence            9997665432      2222211111 11245555554 47999998 76642  2333 799999999998875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=2.5e-36  Score=291.22  Aligned_cols=283  Identities=18%  Similarity=0.200  Sum_probs=219.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||+||+++|..|++.|++|+|||+++.+||.|.+.            |+....      ..+.+++      
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~------------~~~~~~------~~~~~~~------   62 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL------------YPEKYI------YDVAGFP------   62 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH------------CTTSEE------CCSTTCS------
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc------------CCCceE------eccCCCC------
Confidence            4799999999999999999999999999999999999999631            111110      1111111      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                           ..+..++..|+.++++++++.  ++++++|.+++...++         .|.|++.++      ++.||+||+|||
T Consensus        63 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~---------~~~v~~~~g------~~~~d~vVlAtG  120 (332)
T 3lzw_A           63 -----KIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADG---------VFKLVTNEE------THYSKTVIITAG  120 (332)
T ss_dssp             -----SEEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEECTTS---------CEEEEESSE------EEEEEEEEECCT
T ss_pred             -----CCCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEECCCC---------cEEEEECCC------EEEeCEEEECCC
Confidence                 124689999999999988876  8899999999987543         688888654      489999999999


Q ss_pred             CCC-CCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc---chhh
Q 044575          172 HYS-YPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG---LSKV  247 (454)
Q Consensus       172 ~~~-~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~---~~~~  247 (454)
                      ..+ .|+.|.+||.+.+.+..+|+ .+.....+++++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+.+.   +.++
T Consensus       121 ~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l  199 (332)
T 3lzw_A          121 NGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENL  199 (332)
T ss_dssp             TSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHH
T ss_pred             CCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHH
Confidence            422 89999999998887777887 666666677899999999999999999999999999999998876322   2222


Q ss_pred             hccCCCeEEcCceeEEecCC---cEEEeC-----CCEEeeceEEEccCcccCCcCCCC------CCceeeCCCCcccccC
Q 044575          248 ISKHNNLHLHPQIDCLREDG---RVTFVD-----GCWVTADTILYCTGYSYSFPFLDT------KGIVVVDDDRVGPLYE  313 (454)
Q Consensus       248 l~~~~~i~~~~~v~~v~~~~---~v~~~d-----G~~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~~~~~~~~  313 (454)
                      ....++++.+..+.++..++   .|++.+     ++++++|.||+|+|++|+.+++..      +|.+.+|++..     
T Consensus       200 ~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~-----  274 (332)
T 3lzw_A          200 HASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTME-----  274 (332)
T ss_dssp             HHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSB-----
T ss_pred             hcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCc-----
Confidence            23345777788899997654   377776     356889999999999999888653      45666666443     


Q ss_pred             cccCCCCCCCceEeccccc----ccchhHHHHHHHHHHHHHc
Q 044575          314 HTFPPSLAPSLSFVGIPRK----LIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       314 ~~~~~~~~p~l~~iG~~~~----~~~~~~a~~qa~~~a~~i~  351 (454)
                           +..|++|++|++..    ......|..||+.+|.++.
T Consensus       275 -----t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  311 (332)
T 3lzw_A          275 -----TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK  311 (332)
T ss_dssp             -----CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             -----eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence                 35699999999973    2345688889998887764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=1.6e-35  Score=285.04  Aligned_cols=284  Identities=20%  Similarity=0.210  Sum_probs=214.8

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      |...+||+|||||++|+++|..|++.|++|+|||++ .+||.|.+....                     ..++.+    
T Consensus         5 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~---------------------~~~~~~----   58 (325)
T 2q7v_A            5 TAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEV---------------------ENFPGF----   58 (325)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCB---------------------CCSTTC----
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccccc---------------------ccCCCC----
Confidence            334589999999999999999999999999999998 799998854221                     001111    


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc--CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML--DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                            +...++.++.+++.+.++++++.  +++ .+|.+++..  ++.         .|+|.+.++.     ++.||+|
T Consensus        59 ------~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~---------~~~v~~~~g~-----~~~~~~v  115 (325)
T 2q7v_A           59 ------PEPIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHP---------YPFTVRGYNG-----EYRAKAV  115 (325)
T ss_dssp             ------SSCBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSS---------CCEEEEESSC-----EEEEEEE
T ss_pred             ------CCCCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCc---------eEEEEECCCC-----EEEeCEE
Confidence                  11235688999999999999887  655 589998876  321         3888777654     7899999


Q ss_pred             EEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccc
Q 044575          167 VVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGL  244 (454)
Q Consensus       167 ViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~  244 (454)
                      |+|||  +.|+.|.+||.+.+.+..+|...+.....+.+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+.  +.+
T Consensus       116 v~AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~  193 (325)
T 2q7v_A          116 ILATG--ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVA  193 (325)
T ss_dssp             EECCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHH
T ss_pred             EECcC--CCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHH
Confidence            99999  78899999998877666666554433344567999999999999999999999999999999988663  223


Q ss_pred             hhhhcc--CCCeEEcCceeEEecCC---cEEEe---CCC--EEeeceEEEccCcccCCcCCCC------CCceeeCCCCc
Q 044575          245 SKVISK--HNNLHLHPQIDCLREDG---RVTFV---DGC--WVTADTILYCTGYSYSFPFLDT------KGIVVVDDDRV  308 (454)
Q Consensus       245 ~~~l~~--~~~i~~~~~v~~v~~~~---~v~~~---dG~--~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~~~  308 (454)
                      .+.+.+  .++++.+..|+++..++   .|.+.   +|+  ++++|.||+|||++|+.+++..      +|.+.+|++..
T Consensus       194 ~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~  273 (325)
T 2q7v_A          194 QARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIY  273 (325)
T ss_dssp             HHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTB
T ss_pred             HHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCc
Confidence            233322  35677788899987654   46776   676  6889999999999999888753      23444444322


Q ss_pred             ccccCcccCCCCCCCceEecccccc--cchhHHHHHHHHHHHHHcCC
Q 044575          309 GPLYEHTFPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       309 ~~~~~~~~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i~g~  353 (454)
                                ++.|++|++||+...  .....|..||+.+|.++...
T Consensus       274 ----------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  310 (325)
T 2q7v_A          274 ----------TNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQ  310 (325)
T ss_dssp             ----------CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHH
Confidence                      356999999999864  35678999999999887543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=1.4e-35  Score=284.87  Aligned_cols=276  Identities=18%  Similarity=0.184  Sum_probs=215.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||++|+++|..|++.|++|+|||++  +||.|.+....                     ..++.+       
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~---------------------~~~~~~-------   64 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIV---------------------DDYLGL-------   64 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEE---------------------CCSTTS-------
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccc---------------------cccCCC-------
Confidence            479999999999999999999999999999997  99999853210                     000111       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          ......++.+++.++++++++.  +.+ ++|.+++..++          .|.|.+.++.     ++.||+||+|||
T Consensus        65 ----~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~----------~~~v~~~~g~-----~~~~d~lvlAtG  122 (323)
T 3f8d_A           65 ----IEIQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRGD----------EFVVKTKRKG-----EFKADSVILGIG  122 (323)
T ss_dssp             ----TTEEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC------------CEEEEESSSC-----EEEEEEEEECCC
T ss_pred             ----CCCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecCC----------EEEEEECCCC-----EEEcCEEEECcC
Confidence                1135689999999999999887  777 89999987643          7888887654     789999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh-
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI-  248 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l-  248 (454)
                        +.|+.|.+||.+.+.+..+|...+.....+.+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+.+.+  .+.+.+ 
T Consensus       123 --~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~  200 (323)
T 3f8d_A          123 --VKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVK  200 (323)
T ss_dssp             --CEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHH
T ss_pred             --CCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHH
Confidence              779999999998877777766655555566789999999999999999999999999999999987743  222223 


Q ss_pred             cc-CCCeEEcCceeEEecCC---cEEEeC---CC--EEeeceEEEccCcccCCcCCC-------CCCceeeCCCCccccc
Q 044575          249 SK-HNNLHLHPQIDCLREDG---RVTFVD---GC--WVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPLY  312 (454)
Q Consensus       249 ~~-~~~i~~~~~v~~v~~~~---~v~~~d---G~--~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~~  312 (454)
                      .+ .++++.+..|+++..++   .|++.+   |+  ++++|.||+|+|++|+.+++.       +.|.+.+|++..    
T Consensus       201 ~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~----  276 (323)
T 3f8d_A          201 KKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMR----  276 (323)
T ss_dssp             TCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCB----
T ss_pred             hCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCce----
Confidence            33 34677778899987654   477776   87  688999999999999977643       345666665443    


Q ss_pred             CcccCCCCCCCceEecccccc----cchhHHHHHHHHHHHHHc
Q 044575          313 EHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       313 ~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a~~i~  351 (454)
                            +..|++|++|++...    .....|..||+.+|.++.
T Consensus       277 ------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  313 (323)
T 3f8d_A          277 ------TSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAY  313 (323)
T ss_dssp             ------CSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ------ecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence                  356999999999874    345788899999987764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=1.8e-35  Score=285.86  Aligned_cols=284  Identities=19%  Similarity=0.208  Sum_probs=212.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||.|...            ++...      +..+..++      
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~------------~~~~~------~~~~~~~~------   60 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL------------YPEKY------IYDVAGFP------   60 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT------------CTTSE------ECCSTTCS------
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc------------CCCce------eeccCCCC------
Confidence            4799999999999999999999999999999999999999642            11000      00011111      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                           .....++.+++.++++++++.  ++++++|.+++..++          .|+|++.++.     ++.||+||+|||
T Consensus        61 -----~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~----------~~~v~~~~g~-----~~~~~~lv~AtG  118 (335)
T 2zbw_A           61 -----KVYAKDLVKGLVEQVAPFNPV--YSLGERAETLEREGD----------LFKVTTSQGN-----AYTAKAVIIAAG  118 (335)
T ss_dssp             -----SEEHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEETT----------EEEEEETTSC-----EEEEEEEEECCT
T ss_pred             -----CCCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECCC----------EEEEEECCCC-----EEEeCEEEECCC
Confidence                 124578889999998888876  888999999987643          6888776543     689999999999


Q ss_pred             CCC-CCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc------c
Q 044575          172 HYS-YPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG------L  244 (454)
Q Consensus       172 ~~~-~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~------~  244 (454)
                      ..+ .|..|++||.+.+.+..+|.. ++..+.+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+.+.      +
T Consensus       119 ~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l  197 (335)
T 2zbw_A          119 VGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKEL  197 (335)
T ss_dssp             TSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHH
T ss_pred             CCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHH
Confidence            432 688888999877665444433 33444567899999999999999999999999999999998876322      2


Q ss_pred             hhhhcc-CCCeEEcCceeEEecCC---cEEEe---CC--CEEeeceEEEccCcccCCcCCCC------CCceeeCCCCcc
Q 044575          245 SKVISK-HNNLHLHPQIDCLREDG---RVTFV---DG--CWVTADTILYCTGYSYSFPFLDT------KGIVVVDDDRVG  309 (454)
Q Consensus       245 ~~~l~~-~~~i~~~~~v~~v~~~~---~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~~~~  309 (454)
                      .+.+.+ .++++.+..|.++..++   .|.+.   +|  +++++|.||+|+|++|+.+++..      .|.+.+|++.. 
T Consensus       198 ~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~-  276 (335)
T 2zbw_A          198 MKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMA-  276 (335)
T ss_dssp             HHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCB-
T ss_pred             HhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCC-
Confidence            222222 35777788888887653   47777   77  46889999999999999877653      34555555433 


Q ss_pred             cccCcccCCCCCCCceEecccccc----cchhHHHHHHHHHHHHHcC
Q 044575          310 PLYEHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       310 ~~~~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a~~i~g  352 (454)
                               +..|++|++||+...    .....|..||+.+|+++.+
T Consensus       277 ---------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          277 ---------TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             ---------CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence                     356999999999853    2346788899998887753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=7.4e-35  Score=276.42  Aligned_cols=273  Identities=13%  Similarity=0.127  Sum_probs=210.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      +||+|||||++|+++|..|++.|++|+|||+++..++.+...                        .   ++        
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~------------------------~---~~--------   47 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS------------------------H---GF--------   47 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC------------------------C---SS--------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh------------------------c---CC--------
Confidence            689999999999999999999999999999975332221100                        0   00        


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      ......+..++..++.+++.+++..  ..++++|++++..++          .|.|++.++.     ++.||+||+||| 
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~v~~i~~~~~----------~~~v~~~~g~-----~~~~d~vviAtG-  109 (297)
T 3fbs_A           48 LGQDGKAPGEIIAEARRQIERYPTI--HWVEGRVTDAKGSFG----------EFIVEIDGGR-----RETAGRLILAMG-  109 (297)
T ss_dssp             TTCTTCCHHHHHHHHHHHHTTCTTE--EEEESCEEEEEEETT----------EEEEEETTSC-----EEEEEEEEECCC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHhcCCe--EEEEeEEEEEEEcCC----------eEEEEECCCC-----EEEcCEEEECCC-
Confidence            1112345688999999988876321  233669999987643          6888887654     789999999999 


Q ss_pred             CCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC-cCccchhhhccC
Q 044575          173 YSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN-ISEGLSKVISKH  251 (454)
Q Consensus       173 ~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~-~~~~~~~~l~~~  251 (454)
                       +.|+.|.+||.+.+.+...|...+.....+++++|+|||+|.+|+|+|..|++.+ +|+++.+.+. +.+.+.+.+.+.
T Consensus       110 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~~l~~~  187 (297)
T 3fbs_A          110 -VTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHALLAAR  187 (297)
T ss_dssp             -CEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHHHHHHT
T ss_pred             -CCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHHHHHHC
Confidence             7899999999988777777776665555667899999999999999999999998 9999998775 344444445444


Q ss_pred             -CCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCC---------CC-ceeeCCCCcccccCcccCCCC
Q 044575          252 -NNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDT---------KG-IVVVDDDRVGPLYEHTFPPSL  320 (454)
Q Consensus       252 -~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~---------~g-~i~v~~~~~~~~~~~~~~~~~  320 (454)
                       ++++ ...|+++..++.|.+.||+++++|.||+|+|++|+.+++..         .| .+.+|++..          ++
T Consensus       188 gv~i~-~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~----------t~  256 (297)
T 3fbs_A          188 GVRVE-TTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQ----------TT  256 (297)
T ss_dssp             TCEEE-CSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCB----------CS
T ss_pred             CcEEE-cceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCc----------cC
Confidence             4565 48899997664699999999999999999999999887542         23 455565433          45


Q ss_pred             CCCceEeccccc-ccchhHHHHHHHHHHHHHc
Q 044575          321 APSLSFVGIPRK-LIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       321 ~p~l~~iG~~~~-~~~~~~a~~qa~~~a~~i~  351 (454)
                      .|++|++||+.. ......|..||+.+|.++.
T Consensus       257 ~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  288 (297)
T 3fbs_A          257 ARGIFACGDVARPAGSVALAVGDGAMAGAAAH  288 (297)
T ss_dssp             STTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence            799999999987 4556899999999998774

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=1.7e-34  Score=281.90  Aligned_cols=288  Identities=21%  Similarity=0.243  Sum_probs=212.3

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      |+..+||+|||||++|+++|..|++.|++|+|||+++.+||.|....  +.+    ..            .....++   
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~--~~~----~~------------~~~~~~~---   69 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALY--PEK----HI------------YDVAGFP---   69 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTC--TTS----EE------------CCSTTCS---
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccC--CCc----cc------------ccCCCCC---
Confidence            44568999999999999999999999999999999999999996321  000    00            0011111   


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                              .....++.+++.+.++++++.  ++++++|.+++..++.         .|+|++.++.     ++.||+||+
T Consensus        70 --------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~---------~~~v~~~~g~-----~~~~~~li~  125 (360)
T 3ab1_A           70 --------EVPAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDG---------TFETRTNTGN-----VYRSRAVLI  125 (360)
T ss_dssp             --------SEEHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTS---------CEEEEETTSC-----EEEEEEEEE
T ss_pred             --------CCCHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCc---------eEEEEECCCc-----EEEeeEEEE
Confidence                    124578889999999888876  8889999999986543         6888876554     789999999


Q ss_pred             ccCCCC-CCCCCCCCC-cCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc--c
Q 044575          169 ATGHYS-YPRLPSIKG-MDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG--L  244 (454)
Q Consensus       169 AtG~~~-~p~~p~i~G-~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~--~  244 (454)
                      |||..+ .|..|++|| .+.+.+..+|.. ++....+.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+.+.  +
T Consensus       126 AtG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~  204 (360)
T 3ab1_A          126 AAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKT  204 (360)
T ss_dssp             CCTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHH
T ss_pred             ccCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHH
Confidence            999543 678888888 766665544433 34445567899999999999999999999999999999998876322  2


Q ss_pred             hhh----hcc-CCCeEEcCceeEEecC-C---cEEEe--CC--CEEeeceEEEccCcccCCcCCCC------CCceeeCC
Q 044575          245 SKV----ISK-HNNLHLHPQIDCLRED-G---RVTFV--DG--CWVTADTILYCTGYSYSFPFLDT------KGIVVVDD  305 (454)
Q Consensus       245 ~~~----l~~-~~~i~~~~~v~~v~~~-~---~v~~~--dG--~~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~  305 (454)
                      .+.    +.+ .++++.+..|+++..+ +   .|.+.  +|  +++++|.||+|+|+.|+.+++..      +|.+.+|+
T Consensus       205 ~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~  284 (360)
T 3ab1_A          205 AHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDS  284 (360)
T ss_dssp             HHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCT
T ss_pred             HHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecC
Confidence            222    211 2467777788888754 2   46675  77  46889999999999999877653      34555655


Q ss_pred             CCcccccCcccCCCCCCCceEecccccc----cchhHHHHHHHHHHHHHcC
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a~~i~g  352 (454)
                      +..          +..|++|++||+...    .....|..||+.+|.++.+
T Consensus       285 ~~~----------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  325 (360)
T 3ab1_A          285 HMK----------TSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS  325 (360)
T ss_dssp             TSB----------CSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCc----------CCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence            433          356999999999853    2346788899988877753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=1e-34  Score=280.62  Aligned_cols=291  Identities=16%  Similarity=0.144  Sum_probs=214.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC----CCCCcccccCCCCCCCCccccccccceecCCccccccCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN----HDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFP   85 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~----~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (454)
                      ...+||+|||||++|+++|..|++.|++|+|||+.    ..+||.|.+...                     ...++   
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~---------------------~~~~~---   75 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTE---------------------IENFP---   75 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSE---------------------ECCST---
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchh---------------------hcccC---
Confidence            34689999999999999999999999999999994    478999875321                     01111   


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           86 FVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                             ..+.+....++..|+.++++++++.  +++++ |.+++....          .|.+++....+  ..++.||+
T Consensus        76 -------~~~~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~~----------~~~v~~~~~~~--~~~~~~d~  133 (338)
T 3itj_A           76 -------GFPDGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSSK----------PFKLWTEFNED--AEPVTTDA  133 (338)
T ss_dssp             -------TCTTCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSSS----------SEEEEETTCSS--SCCEEEEE
T ss_pred             -------CCcccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcCC----------EEEEEEEecCC--CcEEEeCE
Confidence                   1223356789999999999999987  88887 999986543          67777642111  12679999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPE--PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-  242 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~--~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-  242 (454)
                      ||+|||  +.|+.|.+||.+.+.+..++...+....  .+.+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+.+.. 
T Consensus       134 vvlAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~  211 (338)
T 3itj_A          134 IILATG--ASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAS  211 (338)
T ss_dssp             EEECCC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC
T ss_pred             EEECcC--CCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCC
Confidence            999999  7899999999877666666665443333  45789999999999999999999999999999999887643 


Q ss_pred             -cchhhh-cc-CCCeEEcCceeEEecCC----cEEEeC-----CCEEeeceEEEccCcccCCcCCCCCCceeeCCCCccc
Q 044575          243 -GLSKVI-SK-HNNLHLHPQIDCLREDG----RVTFVD-----GCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGP  310 (454)
Q Consensus       243 -~~~~~l-~~-~~~i~~~~~v~~v~~~~----~v~~~d-----G~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~  310 (454)
                       .+.+.+ .. .++++.+..|+++..++    .|++.+     ++++++|.||+|||+.|+.+++..  .+.+++.....
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~  289 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG--QVDTDEAGYIK  289 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT--TBCBCTTSCBC
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC--ceEecCCCcEE
Confidence             233333 33 45777888899997654    277776     457889999999999999888764  23444332211


Q ss_pred             ccCcccCCCCCCCceEecccccc--cchhHHHHHHHHHHHHHc
Q 044575          311 LYEHTFPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       311 ~~~~~~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i~  351 (454)
                      ..+.... +..|++|++||+...  .....|..||+.+|.++.
T Consensus       290 v~~~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  331 (338)
T 3itj_A          290 TVPGSSL-TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE  331 (338)
T ss_dssp             CCTTSSB-CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EcCcccc-cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence            1111222 356999999999853  456788899999887764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=1.7e-34  Score=276.12  Aligned_cols=285  Identities=18%  Similarity=0.215  Sum_probs=210.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      +||+|||||++|+++|..|++.|+ +|+|||++ .+||.|.+....                     ..++++       
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~---------------------~~~~~~-------   52 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEI---------------------ENYPGV-------   52 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCB---------------------CCSTTC-------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccccccc---------------------ccCCCC-------
Confidence            689999999999999999999999 99999994 789998754221                     001111       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +......++.+++.++++++++.  +++ ++|.+++..++          .|+|++.++.     ++.||+||+|||
T Consensus        53 ---~~~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~~----------~~~v~~~~g~-----~~~~~~vv~AtG  111 (311)
T 2q0l_A           53 ---KEVVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKDS----------HFVILAEDGK-----TFEAKSVIIATG  111 (311)
T ss_dssp             ---CSCBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEETT----------EEEEEETTSC-----EEEEEEEEECCC
T ss_pred             ---cccCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcCC----------EEEEEEcCCC-----EEECCEEEECCC
Confidence               12346688999999999888876  666 78999987542          6888776543     789999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhhhc
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKVIS  249 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~l~  249 (454)
                        +.|+.|++||.+.+.+..+|...+.....+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+.  +.+.+.+.
T Consensus       112 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~  189 (311)
T 2q0l_A          112 --GSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAK  189 (311)
T ss_dssp             --EEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHH
T ss_pred             --CCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHh
Confidence              78899999998766555566544433334567999999999999999999999999999999988763  22333333


Q ss_pred             c--CCCeEEcCceeEEecC-C---cEEEe---CCC--EEeeceEEEccCcccCCcCCCCCC---ceeeCCCCcccccCcc
Q 044575          250 K--HNNLHLHPQIDCLRED-G---RVTFV---DGC--WVTADTILYCTGYSYSFPFLDTKG---IVVVDDDRVGPLYEHT  315 (454)
Q Consensus       250 ~--~~~i~~~~~v~~v~~~-~---~v~~~---dG~--~i~~D~vI~atG~~~~~~~l~~~g---~i~v~~~~~~~~~~~~  315 (454)
                      +  .++++.+..++++..+ +   .|.+.   +|+  ++++|.||+|+|++|+.+++...+   .+.+|+........+ 
T Consensus       190 ~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-  268 (311)
T 2q0l_A          190 NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-  268 (311)
T ss_dssp             TCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-
T ss_pred             hCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCc-
Confidence            2  3466777888888754 2   36776   676  688999999999999988876432   133333221111111 


Q ss_pred             cCCCCCCCceEecccccc--cchhHHHHHHHHHHHHHc
Q 044575          316 FPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       316 ~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i~  351 (454)
                      +. ++.|++|++||+...  .....|..||+.+|.++.
T Consensus       269 ~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  305 (311)
T 2q0l_A          269 MK-TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVI  305 (311)
T ss_dssp             CB-CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             cc-cCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence            22 356999999999864  346789999999998774

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=1.7e-34  Score=276.01  Aligned_cols=279  Identities=16%  Similarity=0.184  Sum_probs=208.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      +||+|||||++|+++|..|++.|++|+|||+  .+||.|......                        ..+        
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~~------------------------~~~--------   47 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVDI------------------------ENY--------   47 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCEE------------------------CCB--------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccccc------------------------ccc--------
Confidence            6899999999999999999999999999986  589998743110                        000        


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      ....+....++.+++.++++++++.  ++++++|..++.....      .. .|.|++.++.     ++.||+||+||| 
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~------~~-~~~v~~~~g~-----~~~~~~lv~AtG-  112 (310)
T 1fl2_A           48 ISVPKTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVE------GG-LHQIETASGA-----VLKARSIIVATG-  112 (310)
T ss_dssp             TTBSSEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSST------TC-CEEEEETTSC-----EEEEEEEEECCC-
T ss_pred             cCcCCCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccC------Cc-eEEEEECCCC-----EEEeCEEEECcC-
Confidence            0112235578899999999888876  8889899999865321      01 6888876654     689999999999 


Q ss_pred             CCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhhhcc
Q 044575          173 YSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKVISK  250 (454)
Q Consensus       173 ~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~l~~  250 (454)
                       +.|..|++||.+.+.+..+|.........+.+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+.  +.+.+.+.+
T Consensus       113 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~  191 (310)
T 1fl2_A          113 -AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRS  191 (310)
T ss_dssp             -EEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHT
T ss_pred             -CCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhh
Confidence             77888889998877655556544322334567999999999999999999999999999999988763  223333433


Q ss_pred             --CCCeEEcCceeEEecCC----cEEEeC---CC--EEeeceEEEccCcccCCcCCCC------CCceeeCCCCcccccC
Q 044575          251 --HNNLHLHPQIDCLREDG----RVTFVD---GC--WVTADTILYCTGYSYSFPFLDT------KGIVVVDDDRVGPLYE  313 (454)
Q Consensus       251 --~~~i~~~~~v~~v~~~~----~v~~~d---G~--~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~~~~~~~~  313 (454)
                        .++++.+..++++..++    .|.+.+   |+  ++++|.||+|+|++|+.+++..      .|.+.+|++..     
T Consensus       192 ~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~-----  266 (310)
T 1fl2_A          192 LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCE-----  266 (310)
T ss_dssp             CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCB-----
T ss_pred             CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCc-----
Confidence              34677788888887542    367765   54  5789999999999999888753      23344444322     


Q ss_pred             cccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHc
Q 044575          314 HTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       314 ~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~  351 (454)
                           ++.|++|++||+...+  ....|..||+.+|.++.
T Consensus       267 -----t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  301 (310)
T 1fl2_A          267 -----TNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF  301 (310)
T ss_dssp             -----CSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence                 4579999999998754  45788899999988764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.8e-34  Score=274.86  Aligned_cols=276  Identities=18%  Similarity=0.206  Sum_probs=193.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+..|.+..                     +.+       
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~~~i~~~---------------------p~~-------   56 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTEEVENF---------------------PGF-------   56 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGCSCBCCS---------------------TTC-------
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeecccccCCc---------------------CCc-------
Confidence            59999999999999999999999999999998 4799999876653210                     111       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          ......++.........++...  +..+..+......            ...+...++.     ++.||+||||||
T Consensus        57 ----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~~~~~~-----~~~~d~liiAtG  113 (312)
T 4gcm_A           57 ----EMITGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDKG------------EYKVINFGNK-----ELTAKAVIIATG  113 (312)
T ss_dssp             ----SSBCHHHHHHHHHHHHHHTTCE--EEECCCCEEEECS------------SCEEEECSSC-----EEEEEEEEECCC
T ss_pred             ----cccchHHHHHHHHHHHhhcccc--ccceeeeeeeeee------------cceeeccCCe-----EEEeceeEEccc
Confidence                1134466666666666666554  4445444443322            2223333333     789999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh---hh
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK---VI  248 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~---~l  248 (454)
                        +.|+.|++||.+.+.+..+++....+...+++|+|+|||+|++|+|+|..|++.|.+||+++|.+++.+....   .+
T Consensus       114 --s~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~  191 (312)
T 4gcm_A          114 --AEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAF  191 (312)
T ss_dssp             --EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHH
T ss_pred             --CccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHH
Confidence              8999999999988877777766655555667899999999999999999999999999999999887543221   12


Q ss_pred             ccCC-CeEEcCceeEEec-CC---c--EEE-e--CCCEEeeceEEEccCcccCCcCCC------CCCceeeCCCCccccc
Q 044575          249 SKHN-NLHLHPQIDCLRE-DG---R--VTF-V--DGCWVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPLY  312 (454)
Q Consensus       249 ~~~~-~i~~~~~v~~v~~-~~---~--v~~-~--dG~~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~~  312 (454)
                      .... .......+..... +.   .  ... .  ++..+++|.|++++|..|+..++.      ++|.|.+|++.+    
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~----  267 (312)
T 4gcm_A          192 KNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMT----  267 (312)
T ss_dssp             HCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSB----
T ss_pred             HhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCc----
Confidence            1111 1111111221111 11   0  111 1  234678999999999999987643      456677777665    


Q ss_pred             CcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHc
Q 044575          313 EHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       313 ~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~  351 (454)
                            |+.|++|++||+...+  ....|..|++.+|.++.
T Consensus       268 ------Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          268 ------TSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAA  302 (312)
T ss_dssp             ------CSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred             ------cCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence                  5679999999998532  45688899999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=2.6e-34  Score=274.98  Aligned_cols=287  Identities=21%  Similarity=0.255  Sum_probs=212.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEE-EeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVV-LEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~v-ie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++||+|||||+||+++|..|++.|++|+| +|+ +.+||.|.+....                     ..++        
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~---------------------~~~~--------   53 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEI---------------------ENYP--------   53 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCB---------------------CCST--------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeecee---------------------ccCC--------
Confidence            47999999999999999999999999999 999 7799999854221                     0011        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        ..+.+.+..++..|+.++++++++.  ++++ +|.++ ..+...        .|.+.+....     ++.||+||+||
T Consensus        54 --~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~--------~~~v~~~~~~-----~~~~d~lvlAt  114 (315)
T 3r9u_A           54 --GVAQVMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDG--------SFTIKLEGGK-----TELAKAVIVCT  114 (315)
T ss_dssp             --TCCSCBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTS--------CEEEEETTSC-----EEEEEEEEECC
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCC--------cEEEEEecCC-----EEEeCEEEEee
Confidence              1122346789999999999999887  7777 88888 543111        6776444321     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cc-hhh
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GL-SKV  247 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~-~~~  247 (454)
                      |  +.|+.|.+||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+.+..  .+ .+.
T Consensus       115 G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~  192 (315)
T 3r9u_A          115 G--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKV  192 (315)
T ss_dssp             C--EEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHH
T ss_pred             C--CCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHH
Confidence            9  789999999998887777787766555556789999999999999999999999999999999887632  11 222


Q ss_pred             hcc-CCCeEEcCceeEEecCC----cEEEe--CCC--EEeeceEEEccCcccCCcCCCC---CCceeeCCCCcccccCcc
Q 044575          248 ISK-HNNLHLHPQIDCLREDG----RVTFV--DGC--WVTADTILYCTGYSYSFPFLDT---KGIVVVDDDRVGPLYEHT  315 (454)
Q Consensus       248 l~~-~~~i~~~~~v~~v~~~~----~v~~~--dG~--~i~~D~vI~atG~~~~~~~l~~---~g~i~v~~~~~~~~~~~~  315 (454)
                      +.+ .++++.++.|.++..++    .|++.  +|+  ++++|.||+|+|++|+.+++..   .|.+..++...... ...
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~v-d~~  271 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSV-DLK  271 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCC-CTT
T ss_pred             HhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEe-CCC
Confidence            322 34677788999987543    36676  887  6889999999999999887654   11133333221111 111


Q ss_pred             cCCCCCCCceEeccccc--ccchhHHHHHHHHHHHHHc
Q 044575          316 FPPSLAPSLSFVGIPRK--LIGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       316 ~~~~~~p~l~~iG~~~~--~~~~~~a~~qa~~~a~~i~  351 (454)
                      +. ++.|++|++||+..  ......|..||+.+|.++.
T Consensus       272 ~~-t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~  308 (315)
T 3r9u_A          272 MQ-TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM  308 (315)
T ss_dssp             CB-CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             cc-cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence            12 35699999999974  3356789999999998764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=6e-34  Score=273.38  Aligned_cols=287  Identities=18%  Similarity=0.191  Sum_probs=207.5

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      |...+||+|||||++|+++|..|++.|++|+|||+ ..+||.|.......                     .++.+    
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~---------------------~~~~~----   66 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLVE---------------------NYLGF----   66 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCBC---------------------CBTTB----
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchhh---------------------hcCCC----
Confidence            45568999999999999999999999999999999 57899887542110                     00010    


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                             ......++.+++.+.++++++.  +.+ .+|.+++...+          .|+|.+ ++.     ++.||+||+
T Consensus        67 -------~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~----------~~~v~~-~~~-----~~~~~~li~  120 (319)
T 3cty_A           67 -------KSIVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQG----------GFDIET-NDD-----TYHAKYVII  120 (319)
T ss_dssp             -------SSBCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEETT----------EEEEEE-SSS-----EEEEEEEEE
T ss_pred             -------cccCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeCC----------EEEEEE-CCC-----EEEeCEEEE
Confidence                   1234578889999988888766  555 68989887542          677766 333     689999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchh
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSK  246 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~  246 (454)
                      |||  +.|+.|.+||.+.+.+..+|.........+.+++|+|||+|.+|+|+|..|++.+++|++++|.+.+..  .+.+
T Consensus       121 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~  198 (319)
T 3cty_A          121 TTG--TTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQ  198 (319)
T ss_dssp             CCC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHH
T ss_pred             CCC--CCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHH
Confidence            999  788999999987665444554333223335679999999999999999999999999999999876632  2333


Q ss_pred             hh-ccCCCeEEcCceeEEecCC----cEEEe---CCC--EEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccCccc
Q 044575          247 VI-SKHNNLHLHPQIDCLREDG----RVTFV---DGC--WVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTF  316 (454)
Q Consensus       247 ~l-~~~~~i~~~~~v~~v~~~~----~v~~~---dG~--~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~  316 (454)
                      .+ ...++++.+..++++..++    .|.+.   +|+  ++++|.||+|||++|+.+++...| +.+++.......++ +
T Consensus       199 ~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g-l~~~~~g~i~vd~~-~  276 (319)
T 3cty_A          199 EIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSG-VKLDERGYIVVDSR-Q  276 (319)
T ss_dssp             HHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSC-CCBCTTSCBCCCTT-C
T ss_pred             HHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcc-ccccCCccEeCCCC-C
Confidence            33 3345788888899987553    36676   676  578999999999999988875322 22332211111111 1


Q ss_pred             CCCCCCCceEecccccc--cchhHHHHHHHHHHHHHcC
Q 044575          317 PPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       317 ~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i~g  352 (454)
                      . +..|++|++||+...  .....|..||+.+|.++..
T Consensus       277 ~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          277 R-TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             B-CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             c-cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHH
Confidence            2 457999999999865  3457899999999987743

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=9.8e-34  Score=273.83  Aligned_cols=286  Identities=18%  Similarity=0.185  Sum_probs=207.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      +..+||+|||||++|+++|..|++.|++|+|||+. .+||.|.+....                     ..++.+     
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~---------------------~~~~~~-----   64 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDV---------------------ENYPGF-----   64 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCB---------------------CCSTTC-----
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchh---------------------hhcCCC-----
Confidence            45689999999999999999999999999999975 789988753210                     001111     


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE-EEeecCCCeEEEEEeCEEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV-KSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vVi  168 (454)
                           +......++.+++.++++++++.  +++++ |.+++. . .         .|+| .+.++.     ++.||+||+
T Consensus        65 -----~~~~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~-~---------~~~v~~~~~g~-----~~~~d~lvi  120 (335)
T 2a87_A           65 -----RNGITGPELMDEMREQALRFGAD--LRMED-VESVSL-H-G---------PLKSVVTADGQ-----THRARAVIL  120 (335)
T ss_dssp             -----TTCBCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-S-S---------SSEEEEETTSC-----EEEEEEEEE
T ss_pred             -----CCCCCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-C-C---------cEEEEEeCCCC-----EEEeCEEEE
Confidence                 11135678999999999998887  77776 888876 2 2         6778 665443     789999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccch-
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLS-  245 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~-  245 (454)
                      |||  +.|..|++||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+.+|++++|++.+.  ..+. 
T Consensus       121 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~  198 (335)
T 2a87_A          121 AMG--AAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLD  198 (335)
T ss_dssp             CCC--EEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHH
T ss_pred             CCC--CCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHH
Confidence            999  78889999998766555566544333333567999999999999999999999999999999988763  2233 


Q ss_pred             hhhc-cCCCeEEcCceeEEecCC---cEEEe---CC--CEEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccCccc
Q 044575          246 KVIS-KHNNLHLHPQIDCLREDG---RVTFV---DG--CWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTF  316 (454)
Q Consensus       246 ~~l~-~~~~i~~~~~v~~v~~~~---~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~  316 (454)
                      +.+. ..++++.+..|+++..++   .|.+.   +|  +++++|.||+|+|++|+.++++.  .+.+|+.......++..
T Consensus       199 ~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~vd~~~~  276 (335)
T 2a87_A          199 RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE--AIDVDPDGYVLVQGRTT  276 (335)
T ss_dssp             HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBT--TBCBCTTSCBCCSTTSS
T ss_pred             HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhc--ccccCCCccEEeCCCCC
Confidence            2333 334677788899997654   37776   45  46889999999999999888751  23333222111111112


Q ss_pred             CCCCCCCceEecccccc--cchhHHHHHHHHHHHHHc
Q 044575          317 PPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       317 ~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i~  351 (454)
                      . ++.|++|++||+...  .....|..||+.+|.++.
T Consensus       277 ~-t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          277 S-TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             B-CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             c-cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence            2 356999999999865  245678889999887764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.5e-34  Score=292.10  Aligned_cols=302  Identities=20%  Similarity=0.220  Sum_probs=200.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-c-ccccccceecCCccccccCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-H-SSVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      ++..+||+||||||||++||..|++.|++|+|||+++.+||+|.+.+|.|++.+ . ...+........       .+.+
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~-------~~g~   94 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLE-------ALGV   94 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSG-------GGTE
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHh-------hcCc
Confidence            344689999999999999999999999999999999999999999888776511 1 011111111111       1111


Q ss_pred             CCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           87 VLKKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                      ..    .. .......+..+           +....++.++.  +..+. +..+   +..         .+.|...+   
T Consensus        95 ~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~~---~~~---------~~~v~~~~---  151 (491)
T 3urh_A           95 EV----AN-PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKID--GFQGT-GKVL---GQG---------KVSVTNEK---  151 (491)
T ss_dssp             EC----CC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEEC---SSS---------EEEEECTT---
T ss_pred             cc----CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-EEEe---cCC---------EEEEEeCC---
Confidence            10    00 01122333322           22333444544  33332 2222   111         45554332   


Q ss_pred             CeEEEEEeCEEEEccCCCCCCCCCCCCCcCC-ccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575          156 DKVVEEVFDAVVVATGHYSYPRLPSIKGMDK-WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS  234 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~-~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~  234 (454)
                      +...++.||+||||||  +.|  |.+||.+. +.+..+++..........+++|+|||+|.+|+|+|..+++.|.+|+++
T Consensus       152 g~~~~~~~d~lViATG--s~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  227 (491)
T 3urh_A          152 GEEQVLEAKNVVIATG--SDV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVV  227 (491)
T ss_dssp             SCEEEEECSEEEECCC--EEC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEEeCEEEEccC--CCC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            3345789999999999  665  45678753 334444444433333446799999999999999999999999999999


Q ss_pred             cccCCcCccchh--------hhcc-CCCeEEcCceeEEecCC---cEEEeC---C--CEEeeceEEEccCcccCCcCC--
Q 044575          235 AKSLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG---RVTFVD---G--CWVTADTILYCTGYSYSFPFL--  295 (454)
Q Consensus       235 ~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~d---G--~~i~~D~vI~atG~~~~~~~l--  295 (454)
                      ++.+.+.+.+.+        .+.+ .++++.+..|+++..++   .+.+.+   |  +++++|.||+|||++|+.++|  
T Consensus       228 ~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l  307 (491)
T 3urh_A          228 EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGL  307 (491)
T ss_dssp             CSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCH
T ss_pred             eccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCc
Confidence            999887554332        2222 34777888888886433   356653   5  478899999999999999874  


Q ss_pred             -------CCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          296 -------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       296 -------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                             +++|.+.+|+..+          ++.|++|++||+...+ ..+.|..||+.+|+++.|+.
T Consensus       308 ~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  364 (491)
T 3urh_A          308 AKAGVVLDSRGRVEIDRHFQ----------TSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA  364 (491)
T ss_dssp             HHHTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             hhcCceECCCCCEeECCCCC----------CCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence                   2456677766554          4579999999998544 45899999999999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=1.4e-33  Score=270.06  Aligned_cols=290  Identities=18%  Similarity=0.197  Sum_probs=193.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      |+..+||+||||||||++||..|++.|++|+|||+. ..||.+.+ +|.+++        .+.       ..+..     
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~-~~gg~~~~-G~~~~~--------~~i-------~~~~g-----   58 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF-MAGGVAAG-GQLTTT--------TII-------ENFPG-----   58 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-SGGGCCTT-CGGGGS--------SEE-------CCSTT-----
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcccC-CCcCCh--------HHh-------hhccC-----
Confidence            344589999999999999999999999999999986 46666654 332221        000       11111     


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                           .+...+..++.+++.+.+++++..  +. ...|..+.....          .+.+.+.++.     ++.||+|||
T Consensus        59 -----~~~~i~~~~l~~~~~~~~~~~~~~--~~-~~~v~~~~~~~~----------~~~~~~~~~~-----~~~~~~lii  115 (314)
T 4a5l_A           59 -----FPNGIDGNELMMNMRTQSEKYGTT--II-TETIDHVDFSTQ----------PFKLFTEEGK-----EVLTKSVII  115 (314)
T ss_dssp             -----CTTCEEHHHHHHHHHHHHHHTTCE--EE-CCCEEEEECSSS----------SEEEEETTCC-----EEEEEEEEE
T ss_pred             -----CcccCCHHHHHHHHHHHHhhcCcE--EE-EeEEEEeecCCC----------ceEEEECCCe-----EEEEeEEEE
Confidence                 122345688899999999988875  43 344555544432          4555555443     789999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch-
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP--EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS-  245 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~--~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~-  245 (454)
                      |||  +.|+.|++||.+.+.+...+...+...  ..+++++|+|||+|.+|+|+|..+++.|++||+++|.+....... 
T Consensus       116 ATG--~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~  193 (314)
T 4a5l_A          116 ATG--ATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTM  193 (314)
T ss_dssp             CCC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHH
T ss_pred             ccc--ccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchh
Confidence            999  899999999988766555665544322  235789999999999999999999999999999999876532211 


Q ss_pred             -hhhcc--CCCeEEcCceeEEecCC----cEEEe-----CCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccC
Q 044575          246 -KVISK--HNNLHLHPQIDCLREDG----RVTFV-----DGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYE  313 (454)
Q Consensus       246 -~~l~~--~~~i~~~~~v~~v~~~~----~v~~~-----dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~  313 (454)
                       .....  ....+....+.++....    .+.+.     +++++++|.|++|+|++|+++++...  +..+++... . .
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~--~~~~~~G~i-v-~  269 (314)
T 4a5l_A          194 QERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ--VKTADDGYI-L-T  269 (314)
T ss_dssp             HHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS--SCBCTTSCB-C-C
T ss_pred             hhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhccc--ceEcCCeeE-e-C
Confidence             11111  11233333344443221    23332     35678999999999999999987532  222322221 0 0


Q ss_pred             cccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHH
Q 044575          314 HTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLL  350 (454)
Q Consensus       314 ~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i  350 (454)
                      .-+. |+.|++|++||+...+  ....|..|++.+|..+
T Consensus       270 ~~~~-Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~  307 (314)
T 4a5l_A          270 EGPK-TSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSC  307 (314)
T ss_dssp             BTTB-CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCc-cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHH
Confidence            1112 5689999999998654  3456777888777543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.8e-34  Score=292.77  Aligned_cols=299  Identities=20%  Similarity=0.224  Sum_probs=206.5

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHH-cCCcEEEEe--------eCCCCCcccccCCCCCCCCcc-cc-ccccceecCCcc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRK-EGHRVVVLE--------QNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPRE   77 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie--------~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~   77 (454)
                      |...+||+|||||+||+++|..|++ .|++|+|||        +++.+||+|.+.+|.|++.+. +. .+..+.      
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~------   77 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLR------   77 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHH------
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHh------
Confidence            4446899999999999999999999 999999999        357899999998887765111 00 001110      


Q ss_pred             ccccCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHH-----------Hh-CCCccEEeCeEEEEEEEcCCCccccCCcCC
Q 044575           78 IMGYTDFPFVLKKGRDVR-RFPGHKELWLYLKDFCQ-----------RF-GLREMIRFNTRVEYVGMLDCGELIIGNDLI  144 (454)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~-----------~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~  144 (454)
                        .+..+.+..    ... ......++.++.+++.+           +. ++.  +..+ ++..++              
T Consensus        78 --~~~~~g~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g-~~~~i~--------------  134 (495)
T 2wpf_A           78 --ESAGFGWEF----DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD--FFLG-WGSLES--------------  134 (495)
T ss_dssp             --HHHTTTEEC----CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE--EEES-EEEEEE--------------
T ss_pred             --HHHhcCccc----CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EEEe-EEEEee--------------
Confidence              111121111    000 01234555555544433           33 443  4444 354443              


Q ss_pred             cEEEEEeecCC---CeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHH
Q 044575          145 KWVVKSKEKKA---DKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDIS  221 (454)
Q Consensus       145 ~~~v~~~~~~~---~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A  221 (454)
                      .++|++.+..+   ....++.||+||||||  +.|..|++||.+.    .+++.++..... .+++++|||+|.+|+|+|
T Consensus       135 ~~~v~v~~~~~~~~~~~~~~~~d~lViATG--s~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A  207 (495)
T 2wpf_A          135 KNVVVVRETADPKSAVKERLQADHILLATG--SWPQMPAIPGIEH----CISSNEAFYLPE-PPRRVLTVGGGFISVEFA  207 (495)
T ss_dssp             TTEEEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCCTTGGG----CEEHHHHTTCSS-CCSEEEEECSSHHHHHHH
T ss_pred             CCEEEEeecCCccCCCCeEEEcCEEEEeCC--CCcCCCCCCCccc----cccHHHHHhhhh-cCCeEEEECCCHHHHHHH
Confidence            34566652111   0023789999999999  8999999998742    445544433322 468999999999999999


Q ss_pred             HHHhhh---cCeEEEecccCCcCccchh--------hhc-cCCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEc
Q 044575          222 MELVEV---AKEVHLSAKSLNISEGLSK--------VIS-KHNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYC  285 (454)
Q Consensus       222 ~~l~~~---~~~V~l~~r~~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~a  285 (454)
                      ..|++.   |.+|+++++.+.+.+.+++        .+. ..++++.+..|+++..+  +  .|++.+|+++++|.||+|
T Consensus       208 ~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a  287 (495)
T 2wpf_A          208 GIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMA  287 (495)
T ss_dssp             HHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEEC
Confidence            999999   9999999999887554432        222 23578889999999754  2  477889999999999999


Q ss_pred             cCcccCCcCC--C-------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          286 TGYSYSFPFL--D-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       286 tG~~~~~~~l--~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                      +|++|++++|  .       ++|.|.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|.
T Consensus       288 ~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  355 (495)
T 2wpf_A          288 IGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSR----------TNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN  355 (495)
T ss_dssp             SCEEECCGGGTGGGTTCCBCTTSSBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             CCCcccccccchhhcCccCCCCCCEEECCCCc----------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            9999998754  2       234555555443          4579999999998643 4589999999999999885

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.5e-34  Score=291.67  Aligned_cols=289  Identities=17%  Similarity=0.169  Sum_probs=200.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||+||+++|..|++.|.+|+|||+++.+||+|.+.+|.|++.+ ... .+..+. +.+       ..     
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~-~~~-------~~-----   70 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLT-NIA-------NV-----   70 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHH-HHH-------CS-----
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHH-hcc-------cC-----
Confidence            489999999999999999999999999999999999999999888765411 000 011100 000       00     


Q ss_pred             CCCCCCCCCCHHHHHHHHHH------------HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           90 KGRDVRRFPGHKELWLYLKD------------FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~------------~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                           ........+..+...            ..++.++.  +. ..++..++..            .+.|...++.   
T Consensus        71 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~-~g~v~~id~~------------~~~V~~~~g~---  127 (466)
T 3l8k_A           71 -----KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLT--FY-KGYVKIKDPT------------HVIVKTDEGK---  127 (466)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE--EE-SEEEEEEETT------------EEEEEETTSC---
T ss_pred             -----CCCcCHHHHHHHHHhheeccccchHHHHHHhCCCE--EE-EeEEEEecCC------------eEEEEcCCCc---
Confidence                 011222333332222            22222332  22 3366666532            6777665443   


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCC---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYR---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS  234 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~  234 (454)
                      ..++.||+||||||  +.|..|++||.+.    ..++..+.   ......+++|+|||+|.+|+|+|..+++.|.+|+++
T Consensus       128 ~~~~~~d~lviAtG--~~p~~p~i~G~~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  201 (466)
T 3l8k_A          128 EIEAETRYMIIASG--AETAKLRLPGVEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHII  201 (466)
T ss_dssp             EEEEEEEEEEECCC--EEECCCCCTTGGG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEecCEEEECCC--CCccCCCCCCccc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            22389999999999  8999999999862    33333322   111224689999999999999999999999999999


Q ss_pred             cccCCcCccc-hh----hhccC--CCeEEcCceeEEecC---C-cEEEe--CCC--EEeeceEEEccCcccCCcC-CC--
Q 044575          235 AKSLNISEGL-SK----VISKH--NNLHLHPQIDCLRED---G-RVTFV--DGC--WVTADTILYCTGYSYSFPF-LD--  296 (454)
Q Consensus       235 ~r~~~~~~~~-~~----~l~~~--~~i~~~~~v~~v~~~---~-~v~~~--dG~--~i~~D~vI~atG~~~~~~~-l~--  296 (454)
                      .+.+++.+.+ .+    .+.+.  ++++.+..|+++..+   + .|.+.  +|+  ++++|.||+|+|++|+.++ +.  
T Consensus       202 ~~~~~~l~~~~d~~~~~~l~~~l~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~  281 (466)
T 3l8k_A          202 EMLDRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREI  281 (466)
T ss_dssp             CSSSSSCTTSCCHHHHHHHHHHHCCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGG
T ss_pred             EeCCcCCCCCCCHHHHHHHHhcCEEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhc
Confidence            9998875544 32    22221  678888899988752   2 35666  676  7889999999999999883 22  


Q ss_pred             -----CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCC
Q 044575          297 -----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       297 -----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~  353 (454)
                           ++| +.+|+..+          ++.|++|++||+... ...+.|..||+.+|.++.|.
T Consensus       282 gl~~~~~G-i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  333 (466)
T 3l8k_A          282 GLSISKTG-IVVDETMK----------TNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN  333 (466)
T ss_dssp             TCCBCSSS-BCCCTTCB----------CSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred             CceeCCCC-EeECCCcc----------CCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence                 344 55555443          457999999999975 44579999999999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=6.5e-34  Score=284.24  Aligned_cols=282  Identities=17%  Similarity=0.195  Sum_probs=199.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|+||||||||++||..|++.|  .+|+|||+++..++...   +                 .|...   .......  
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~---~-----------------l~~~~---~~~~~~~--   55 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC---A-----------------LPYVI---GEVVEDR--   55 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG---G-----------------HHHHH---TTSSCCG--
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc---h-----------------hHHHH---cCCccch--
Confidence            37999999999999999999987  57999999876532110   0                 00000   0000000  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        .......       ...+.+++++.  ++.+++|+.|+..            ...+.+.....+...++.||+|||||
T Consensus        56 --~~~~~~~-------~~~~~~~~~i~--~~~~~~V~~id~~------------~~~~~~~~~~~~~~~~~~yd~lVIAT  112 (437)
T 4eqs_A           56 --RYALAYT-------PEKFYDRKQIT--VKTYHEVIAINDE------------RQTVSVLNRKTNEQFEESYDKLILSP  112 (437)
T ss_dssp             --GGTBCCC-------HHHHHHHHCCE--EEETEEEEEEETT------------TTEEEEEETTTTEEEEEECSEEEECC
T ss_pred             --hhhhhcC-------HHHHHHhcCCE--EEeCCeEEEEEcc------------CcEEEEEeccCCceEEEEcCEEEECC
Confidence              0000011       12345667877  7889999999865            33455555554566688999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVP--EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI  248 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~--~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l  248 (454)
                      |  +.|+.|++||...+....+........  ...++++++|||+|.+|+|+|..+++.+.+||++++.+++.+.+++.+
T Consensus       113 G--s~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~  190 (437)
T 4eqs_A          113 G--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADM  190 (437)
T ss_dssp             C--EEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGG
T ss_pred             C--CccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchh
Confidence            9  899999888865443322211110000  012358999999999999999999999999999999998855443322


Q ss_pred             --------c-cCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCCCCccccc
Q 044575          249 --------S-KHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPLY  312 (454)
Q Consensus       249 --------~-~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~~  312 (454)
                              . +.++++.+..|++++.+ .+++++|+++++|.||+|+|++||++++.       ++|.|.+|++.+    
T Consensus       191 ~~~~~~~l~~~gV~i~~~~~v~~~~~~-~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~----  265 (437)
T 4eqs_A          191 NQPILDELDKREIPYRLNEEINAINGN-EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFE----  265 (437)
T ss_dssp             GHHHHHHHHHTTCCEEESCCEEEEETT-EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCB----
T ss_pred             HHHHHHHhhccceEEEeccEEEEecCC-eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCcc----
Confidence                    2 23589999999999765 59999999999999999999999988764       345666666554    


Q ss_pred             CcccCCCCCCCceEeccccccc-----------chhHHHHHHHHHHHHHcCCCC
Q 044575          313 EHTFPPSLAPSLSFVGIPRKLI-----------GFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       313 ~~~~~~~~~p~l~~iG~~~~~~-----------~~~~a~~qa~~~a~~i~g~~~  355 (454)
                            ++.|++|++||+...+           ..+.|..||+.+|++|.|...
T Consensus       266 ------Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~  313 (437)
T 4eqs_A          266 ------TNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT  313 (437)
T ss_dssp             ------CSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTT
T ss_pred             ------CCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCC
Confidence                  5679999999997432           346889999999999999754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=3.7e-33  Score=269.39  Aligned_cols=285  Identities=18%  Similarity=0.207  Sum_probs=204.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEee----CCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ----NHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~----~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      ..+||+|||||++|+++|..|++.|++|+|||+    ...+||.|.....                     ...++.+  
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~---------------------~~~~~~~--   63 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD---------------------VENFPGF--   63 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE---------------------ECCSTTC--
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc---------------------cccCCCC--
Confidence            357999999999999999999999999999999    5667887764311                     0001111  


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           87 VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                              +......++.+++.++++++++.  +++++ |.+++...+          .|+|++ ++.     ++.||+|
T Consensus        64 --------~~~~~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~~----------~~~v~~-~~~-----~~~~~~v  116 (333)
T 1vdc_A           64 --------PEGILGVELTDKFRKQSERFGTT--IFTET-VTKVDFSSK----------PFKLFT-DSK-----AILADAV  116 (333)
T ss_dssp             --------TTCEEHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSSS----------SEEEEC-SSE-----EEEEEEE
T ss_pred             --------ccCCCHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcCC----------EEEEEE-CCc-----EEEcCEE
Confidence                    11134578899999999988877  77775 888876432          688876 332     6899999


Q ss_pred             EEccCCCCCCCCCCCCCcCC----ccceeEEeecCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          167 VVATGHYSYPRLPSIKGMDK----WKRKQMHSHIYRVPEP--FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       167 ViAtG~~~~p~~p~i~G~~~----~~~~~~~~~~~~~~~~--~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |+|||  +.|..|++||.+.    +.+..+|+..+.....  ..+++|+|||+|.+|+|+|..|++.+.+|++++|++.+
T Consensus       117 v~A~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          117 ILAIG--AVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             EECCC--EEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EECCC--CCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            99999  7788898999876    5555566554322222  56899999999999999999999999999999998876


Q ss_pred             C--ccch-hhhcc-CCCeEEcCceeEEecCC------cEEEe---CC--CEEeeceEEEccCcccCCcCCCCCCceeeCC
Q 044575          241 S--EGLS-KVISK-HNNLHLHPQIDCLREDG------RVTFV---DG--CWVTADTILYCTGYSYSFPFLDTKGIVVVDD  305 (454)
Q Consensus       241 ~--~~~~-~~l~~-~~~i~~~~~v~~v~~~~------~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~  305 (454)
                      .  +.+. +.+.+ .++++.+..|+++..++      .|.+.   +|  +++++|.||+|+|++|+.++++. + +.+++
T Consensus       195 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~  272 (333)
T 1vdc_A          195 RASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDG-G-VELDS  272 (333)
T ss_dssp             CSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-S-SCBCT
T ss_pred             CccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhc-c-ccccC
Confidence            3  2232 23332 34677788899987554      27776   45  46889999999999999888752 1 23332


Q ss_pred             CCcccccCcccCCCCCCCceEecccccc--cchhHHHHHHHHHHHHH
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLL  350 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i  350 (454)
                      .......++... ++.|++|++||+...  .....|..||+.+|.++
T Consensus       273 ~G~i~vd~~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i  318 (333)
T 1vdc_A          273 DGYVVTKPGTTQ-TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDA  318 (333)
T ss_dssp             TSCBCCCTTSCB-CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEechhhcc-cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHH
Confidence            221111111122 356999999999865  34567888888887655

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=6e-36  Score=303.25  Aligned_cols=356  Identities=16%  Similarity=0.173  Sum_probs=224.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++++|||||||+||+++|+.|++.+++|+|||++++.                  .|..+........+..         
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~------------------~~~PlL~~va~G~l~~---------   93 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF------------------LFTPLLPSAPVGTVDE---------   93 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE------------------ECGGGGGGTTTTSSCG---------
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc------------------ccccchhHHhhccccH---------
Confidence            4578999999999999999999999999999998642                  2222222221111111         


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccE-EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC---------------
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMI-RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK---------------  154 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i-~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~---------------  154 (454)
                                +++...+.++....  ...+ ....+|++|+..            ..+|++.+..               
T Consensus        94 ----------~~i~~p~~~~~~~~--~~~v~~~~~~v~~ID~~------------~k~V~l~~~~~~~~~~~~~~~~~~~  149 (502)
T 4g6h_A           94 ----------KSIIEPIVNFALKK--KGNVTYYEAEATSINPD------------RNTVTIKSLSAVSQLYQPENHLGLH  149 (502)
T ss_dssp             ----------GGGEEEHHHHHTTC--SSCEEEEEEEEEEEEGG------------GTEEEEEEEEEEEECSSSCCCCCCC
T ss_pred             ----------HHhhhhHHHHHHhh--cCCeEEEEEEEEEEEhh------------hCEEEEeecccceeecccccccccc
Confidence                      11111122222111  1112 335688888876            3345443210               


Q ss_pred             CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccce---eEEeecC--------------C--CCCCCCCCeEEEEcCCC
Q 044575          155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRK---QMHSHIY--------------R--VPEPFRNEVVVVVGNSL  215 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~---~~~~~~~--------------~--~~~~~~~k~vvVVG~G~  215 (454)
                      .....++.||+||||||  +.|+.|.+||+++..-.   .-++...              .  .++.....+++|||||+
T Consensus       150 ~~~~~~i~YD~LViAtG--s~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~  227 (502)
T 4g6h_A          150 QAEPAEIKYDYLISAVG--AEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGP  227 (502)
T ss_dssp             TTCCEEEECSEEEECCC--CEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSH
T ss_pred             cCCceEEeCCEEEEcCC--cccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCc
Confidence            12234789999999999  89999999997642100   0000000              0  00001225899999999


Q ss_pred             CHHHHHHHHhhhc--------------CeEEEecccCCcCccchhhhc--------c-CCCeEEcCceeEEecCCcEEE-
Q 044575          216 SGQDISMELVEVA--------------KEVHLSAKSLNISEGLSKVIS--------K-HNNLHLHPQIDCLREDGRVTF-  271 (454)
Q Consensus       216 sg~e~A~~l~~~~--------------~~V~l~~r~~~~~~~~~~~l~--------~-~~~i~~~~~v~~v~~~~~v~~-  271 (454)
                      +|+|+|.+|++.+              .+|+++++.+++.+.+.+.+.        + .++++++..|+++++++ +.+ 
T Consensus       228 tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~-~~~~  306 (502)
T 4g6h_A          228 TGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ-LLAK  306 (502)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSE-EEEE
T ss_pred             chhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCc-eEEE
Confidence            9999999998653              579999999998776654432        2 35788899999997765 433 


Q ss_pred             ---eCCC----EEeeceEEEccCcccCC---cC-------CCCCCceeeCCCCcccccCcccCCCCCCCceEecccccc-
Q 044575          272 ---VDGC----WVTADTILYCTGYSYSF---PF-------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-  333 (454)
Q Consensus       272 ---~dG~----~i~~D~vI~atG~~~~~---~~-------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-  333 (454)
                         .||+    ++++|+||||+|.+|+.   .+       .+.+|.|.||++++.         .++|++|++||+... 
T Consensus       307 ~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~---------~~~~~IfAiGD~a~~~  377 (502)
T 4g6h_A          307 TKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQV---------KGSNNIFAIGDNAFAG  377 (502)
T ss_dssp             EECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBB---------TTCSSEEECGGGEESS
T ss_pred             EEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCcccc---------CCCCCEEEEEcccCCC
Confidence               3554    58899999999999982   11       235678999987763         246899999998753 


Q ss_pred             --cchhHHHHHHHHHHHHHcCCCCCCCHHHHHHH----HHHHHhhhhhcCCCCCc---------ccccc-----------
Q 044575          334 --IGFPFFESQAKWIAQLLSGKRTLPSWDQMMQS----VKEFYHSRDVAGIPKHN---------THDIA-----------  387 (454)
Q Consensus       334 --~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~----~~~~~~~~~~~~~~~~~---------~~~~~-----------  387 (454)
                        ++.+.|..||+++|++|.+..+.|..+.....    +...........+..+.         ...+.           
T Consensus       378 ~p~~a~~A~qqg~~~A~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pF~y~~~G~~a~lG~~~av~~~~~~~~~~~~  457 (502)
T 4g6h_A          378 LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYT  457 (502)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHTTSSSCCHHHHHHHTTCCCCCCCCCEEEEECSTTCEEEEEEETTEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhccchhhhhhhhccchhhhhhcCCCCCCCEecCcceEEEEeCCceEEEccCCCcccee
Confidence              34579999999999999765443322111000    00000000001111000         00010           


Q ss_pred             cHHHHHHHHH-HcCCCCchHHHHHHHHHHhhCCccccccccCCCC
Q 044575          388 NFEYCDRYAD-QIGFPHLEEWRKGLCISALVNSDANLETYRDSWD  431 (454)
Q Consensus       388 ~~~y~~~l~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~  431 (454)
                      ..++.+|++| .+++..+++||+++.  ++++|.++.++.||.-.
T Consensus       458 ~~G~~a~~~w~~~yl~~l~~~r~r~~--v~~~W~~~~~fgRdisr  500 (502)
T 4g6h_A          458 GGGLMTFYLWRILYLSMILSARSRLK--VFFDWIKLAFFKRDFFK  500 (502)
T ss_dssp             EEEHHHHHHHHHHHHHHCSCHHHHHH--HHHHHHHHHHSCCCCCT
T ss_pred             cccHHHHHHHHHHHHHHccchhhhHH--HHHHHHHHHhCCCCCcC
Confidence            1279999999 567777778999999  99999999999998744

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=4e-34  Score=288.14  Aligned_cols=290  Identities=19%  Similarity=0.252  Sum_probs=200.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccc-cccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSV-YASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      +.+||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+.+|.|++.+ .+.. +..++ +.+       .+.+..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~-~~~-------~~g~~~   73 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVR-DAP-------GFGVQA   73 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHH-HGG-------GGTBCC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHh-hhh-------hcCccc
Confidence            4589999999999999999999999999999997 79999998888765411 1110 11111 111       111110


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                          . .......++.++.+.+           .++.++.  +..+ ++..++              .++|++ ++.   
T Consensus        74 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~--------------~~~v~~-~g~---  127 (463)
T 2r9z_A           74 ----S-GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGIT--RVDG-HARFVD--------------AHTIEV-EGQ---  127 (463)
T ss_dssp             ----C----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE--------------TTEEEE-TTE---
T ss_pred             ----C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEe-EEEEcc--------------CCEEEE-CCE---
Confidence                0 0112334444433333           2344554  4444 343343              334655 322   


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                        ++.||+||||||  +.|..|++||.+.    .+++..+..... .+++|+|||+|.+|+|+|..|++.|.+|+++++.
T Consensus       128 --~~~~d~lviAtG--s~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~  198 (463)
T 2r9z_A          128 --RLSADHIVIATG--GRPIVPRLPGAEL----GITSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE  198 (463)
T ss_dssp             --EEEEEEEEECCC--EEECCCSCTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             --EEEcCEEEECCC--CCCCCCCCCCccc----eecHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC
Confidence              689999999999  8999999998742    233333322211 3589999999999999999999999999999999


Q ss_pred             CCcCccchh--------hhc-cCCCeEEcCceeEEecCC---cEEEeCCC-EEeeceEEEccCcccCCcCCC--------
Q 044575          238 LNISEGLSK--------VIS-KHNNLHLHPQIDCLREDG---RVTFVDGC-WVTADTILYCTGYSYSFPFLD--------  296 (454)
Q Consensus       238 ~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~~---~v~~~dG~-~i~~D~vI~atG~~~~~~~l~--------  296 (454)
                      +.+.+.+.+        .+. ..++++.+..|+++..++   .|.+.||+ ++++|.||+|||++|+.++|.        
T Consensus       199 ~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~  278 (463)
T 2r9z_A          199 DRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEV  278 (463)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCcc
Confidence            876544332        222 235788888999987532   57788999 899999999999999987542        


Q ss_pred             -CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCCC
Q 044575          297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                       ++|.+.+|+..+          ++.|++|++||+... ...+.|..||+.+|.++.|..
T Consensus       279 ~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  328 (463)
T 2r9z_A          279 QSNGMVPTDAYQN----------TNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQ  328 (463)
T ss_dssp             CTTSCCCCCTTSB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEeECCCCc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence             345666666544          457999999999854 345799999999999998853

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=9.1e-34  Score=289.75  Aligned_cols=298  Identities=15%  Similarity=0.151  Sum_probs=214.2

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCC-
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFP-   85 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-   85 (454)
                      |...+||+|||||++|+++|.+|++.|++|+|||+++.+||.|.+.+|.|++.+..  ..+..++ +       +..+. 
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~-~-------~~~~g~  111 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR-T-------FSGQYW  111 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHH-H-------TTTSTT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHh-h-------hhhcCc
Confidence            44568999999999999999999999999999999988999999877765431100  0000000 0       01111 


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH-------HH-----HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           86 FVLKKGRDVRRFPGHKELWLYLKD-------FC-----QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~yl~~-------~~-----~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                      ++.    ....+++.+++.+++..       +.     ++.++.  +.++.+|..++.              ++|.+. +
T Consensus       112 ~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~--------------~~v~~~-g  170 (523)
T 1mo9_A          112 FPD----MTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN--------------HTVEAA-G  170 (523)
T ss_dssp             CCC----CTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET--------------TEEEET-T
T ss_pred             HHH----HHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC--------------CEEEEC-C
Confidence            111    22334557778777753       33     445665  555677777652              235543 2


Q ss_pred             CCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEE
Q 044575          154 KADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYR-VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVH  232 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~  232 (454)
                      .     .+.||+||+|||  +.|..|++||.+..  .++++..+. ......+++++|||+|.+|+|+|..+++.|.+|+
T Consensus       171 ~-----~~~~d~lViATG--s~p~~p~i~G~~~~--~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vt  241 (523)
T 1mo9_A          171 K-----VFKAKNLILAVG--AGPGTLDVPGVNAK--GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTV  241 (523)
T ss_dssp             E-----EEEBSCEEECCC--EECCCCCSTTTTSB--TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             E-----EEEeCEEEECCC--CCCCCCCCCCcccC--cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            2     689999999999  89999999998642  144554443 3333455999999999999999999999999999


Q ss_pred             EecccCCcCccchh--------hhcc-CCCeEEcCceeEEec--CC-----cEEEeCCC-EEeeceEEEccCcccCCc-C
Q 044575          233 LSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRE--DG-----RVTFVDGC-WVTADTILYCTGYSYSFP-F  294 (454)
Q Consensus       233 l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~--~~-----~v~~~dG~-~i~~D~vI~atG~~~~~~-~  294 (454)
                      ++++.+.+.+.+..        .+.+ .++++.++.|+++..  ++     .|.+.+|+ ++++|.||+|+|++|+.+ +
T Consensus       242 lv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~  321 (523)
T 1mo9_A          242 MLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAEL  321 (523)
T ss_dssp             EECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHH
T ss_pred             EEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccC
Confidence            99999887554332        2222 357888889999875  33     25667887 899999999999999987 5


Q ss_pred             CC-------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          295 LD-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       295 l~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +.       ++|.|.||++.+          ++.|++|++||+...+ ..+.|..||+++|.++.|..
T Consensus       322 l~~~gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  379 (523)
T 1mo9_A          322 AKILGLDLGPKGEVLVNEYLQ----------TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK  379 (523)
T ss_dssp             HHHHTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHcCCccCCCCCEEECCCCc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            43       456677776654          4579999999999754 45799999999999999853

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=3.9e-33  Score=267.71  Aligned_cols=282  Identities=18%  Similarity=0.214  Sum_probs=205.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+ ..+||.|.+....                     ..++.+       
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~---------------------~~~~~~-------   55 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEV---------------------ENWPGD-------   55 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBC---------------------CCSTTC-------
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchhh---------------------hhCCCC-------
Confidence            47999999999999999999999999999997 4789988753210                     001111       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +......++.+++.++++++++.  +++++ |..++...+          .|++ +.++.     ++.||+||+|||
T Consensus        56 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~~----------~~~v-~~~~~-----~~~~~~lv~AtG  113 (320)
T 1trb_A           56 ---PNDLTGPLLMERMHEHATKFETE--IIFDH-INKVDLQNR----------PFRL-NGDNG-----EYTCDALIIATG  113 (320)
T ss_dssp             ---CSSCBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSSS----------SEEE-EESSC-----EEEEEEEEECCC
T ss_pred             ---CCCCCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecCC----------EEEE-EeCCC-----EEEcCEEEECCC
Confidence               11235678899999999998887  77775 888876532          6877 54443     789999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh-
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI-  248 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l-  248 (454)
                        +.|..|++||.+.+.+..+|+..+.......+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+..  .+.+.+ 
T Consensus       114 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~  191 (320)
T 1trb_A          114 --ASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLM  191 (320)
T ss_dssp             --EEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHH
T ss_pred             --CCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHH
Confidence              788889899877665555655443333335679999999999999999999999999999999887632  222222 


Q ss_pred             ---c-cCCCeEEcCceeEEecCC----cEEEeC----C--CEEeeceEEEccCcccCCcCCCC-----CCceeeCCCCcc
Q 044575          249 ---S-KHNNLHLHPQIDCLREDG----RVTFVD----G--CWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDDRVG  309 (454)
Q Consensus       249 ---~-~~~~i~~~~~v~~v~~~~----~v~~~d----G--~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~~~~  309 (454)
                         . ..++++.+..|+++..++    .|++.+    |  +++++|.||+|+|++|+.++++.     +|.+.+|+....
T Consensus       192 ~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~  271 (320)
T 1trb_A          192 DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHG  271 (320)
T ss_dssp             HHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSS
T ss_pred             HhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCccc
Confidence               2 234777888999987554    277775    5  46889999999999999888752     234444443210


Q ss_pred             cccCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHc
Q 044575          310 PLYEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       310 ~~~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~  351 (454)
                          .... ++.|++|++||+...+  ....|..||+.+|.++.
T Consensus       272 ----~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  310 (320)
T 1trb_A          272 ----NATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE  310 (320)
T ss_dssp             ----CTTB-CSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             ----cccc-CCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence                0012 4569999999998653  45678889988887664

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=3.4e-34  Score=287.76  Aligned_cols=290  Identities=17%  Similarity=0.231  Sum_probs=198.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccc-cccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSV-YASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+.+|.|++.+ .+.. +..++.+.+       .+.++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~-------~~g~~~   74 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGP-------DYGFDT   74 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGG-------GGTEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHH-------hcCccC
Confidence            3579999999999999999999999999999997 79999998888766411 1110 000100000       010000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           89 KKGRDVRRFPGHKELWLYLKD-----------FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                          . .......++.++..+           ..++.++.  +..+ ++..++              .++|.+ ++.   
T Consensus        75 ----~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~i~--------------~~~v~~-~g~---  128 (450)
T 1ges_A           75 ----T-INKFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKG-FARFVD--------------AKTLEV-NGE---  128 (450)
T ss_dssp             ----E-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CCEEEE--------------TTEEEE-TTE---
T ss_pred             ----C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEec--------------CCEEEE-CCE---
Confidence                0 000122333333322           23444554  4444 333443              234555 322   


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                        ++.||+||||||  +.|..|++||.+.    ..++..+..... .+++|+|||+|.+|+|+|..|++.|.+|+++++.
T Consensus       129 --~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  199 (450)
T 1ges_A          129 --TITADHILIATG--GRPSHPDIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMF  199 (450)
T ss_dssp             --EEEEEEEEECCC--EEECCCCSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             --EEEeCEEEECCC--CCCCCCCCCCccc----eecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence              689999999999  8999999998742    233333222111 3689999999999999999999999999999998


Q ss_pred             CCcCccchhh--------hc-cCCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCC---------
Q 044575          238 LNISEGLSKV--------IS-KHNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFL---------  295 (454)
Q Consensus       238 ~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l---------  295 (454)
                      +.+.+.+++.        +. ..++++.++.|+++..+  +  .|.+.||+++++|.||+|+|++|+.++|         
T Consensus       200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~  279 (450)
T 1ges_A          200 DAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT  279 (450)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCB
T ss_pred             CchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceE
Confidence            8765443322        22 23578888899998753  2  4778899999999999999999998754         


Q ss_pred             CCCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCC
Q 044575          296 DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       296 ~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~  353 (454)
                      +++|.+.+|+..+          ++.|++|++||+... ...+.|..||+.+|.++.|.
T Consensus       280 ~~~g~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  328 (450)
T 1ges_A          280 NEKGYIVVDKYQN----------TNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN  328 (450)
T ss_dssp             CTTSCBCCCTTSB----------CSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEeECCCCc----------cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            2346666666544          457999999999854 35589999999999999885

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=1.9e-32  Score=279.62  Aligned_cols=281  Identities=17%  Similarity=0.200  Sum_probs=213.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+||||||||+++|.+|++.|++|+|||+  .+||.|.......                     .+..+      
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~~---------------------~~~~~------  261 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDIE---------------------NYISV------  261 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCBC---------------------CBTTB------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccccccccc---------------------ccCCC------
Confidence            468999999999999999999999999999986  5899987432100                     00011      


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           .+....++..++.++++++++.  ++++++|.+++.....      .+ .|+|++.++.     ++.||+||+||
T Consensus       262 -----~~~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~------~~-~~~V~~~~g~-----~~~~d~vVlAt  322 (521)
T 1hyu_A          262 -----PKTEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATE------GG-LHQIETASGA-----VLKARSIIIAT  322 (521)
T ss_dssp             -----SSBCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSST------TS-CEEEEETTSC-----EEEEEEEEECC
T ss_pred             -----CCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCC------Cc-eEEEEECCCC-----EEEcCEEEECC
Confidence                 1245678999999999988877  8889999999864221      01 6888887654     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI  248 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l  248 (454)
                      |  +.|+.|++||.+.+.+..++.........+.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+..  .+.+.+
T Consensus       323 G--~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l  400 (521)
T 1hyu_A          323 G--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKV  400 (521)
T ss_dssp             C--EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHH
T ss_pred             C--CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHH
Confidence            9  788888999988776666665554444456789999999999999999999999999999999887743  233344


Q ss_pred             cc--CCCeEEcCceeEEecCC----cEEEeC---CC--EEeeceEEEccCcccCCcCCCC------CCceeeCCCCcccc
Q 044575          249 SK--HNNLHLHPQIDCLREDG----RVTFVD---GC--WVTADTILYCTGYSYSFPFLDT------KGIVVVDDDRVGPL  311 (454)
Q Consensus       249 ~~--~~~i~~~~~v~~v~~~~----~v~~~d---G~--~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~~~~~~  311 (454)
                      .+  .++++.+..++++..++    .|.+.+   |+  ++++|.||+|+|++|+++++..      .|.+.+|++..   
T Consensus       401 ~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~---  477 (521)
T 1hyu_A          401 RSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCE---  477 (521)
T ss_dssp             TTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCB---
T ss_pred             hcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCC---
Confidence            43  34677788899887542    356664   54  5789999999999999988753      34455554333   


Q ss_pred             cCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHc
Q 044575          312 YEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       312 ~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~  351 (454)
                             ++.|++|++||+...+  ....|..||+.+|.++.
T Consensus       478 -------ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~  512 (521)
T 1hyu_A          478 -------TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF  512 (521)
T ss_dssp             -------CSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence                   4579999999998654  45788899998887653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.4e-33  Score=285.96  Aligned_cols=301  Identities=15%  Similarity=0.153  Sum_probs=204.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cc-cccccceecCCccccccCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HS-SVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      |+..+||+|||||++|+++|..|++.|++|+|||+++.+||.|.+.+|.|++.+ .. ..+..+.. ..     ..+.++
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~-~~-----~~gi~~   76 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH-LA-----ANGIKY   76 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHH-GG-----GGTCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHH-HH-----hCCccc
Confidence            344589999999999999999999999999999998999999988777654311 00 01111100 00     001111


Q ss_pred             CCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec--
Q 044575           87 VLKKGRDVRRFPGHKELWL-----------YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK--  153 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~--  153 (454)
                      ..       .......+..           .+...+++.++.  +..++.+. ++   ..         .+.|...++  
T Consensus        77 ~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~---~~---------~v~v~~~~g~~  134 (482)
T 1ojt_A           77 PE-------PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD--VIQGDGQF-LD---PH---------HLEVSLTAGDA  134 (482)
T ss_dssp             CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEE-EE---TT---------EEEEEEEEEEE
T ss_pred             CC-------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEeeEEEE-cc---CC---------EEEEEecCCcc
Confidence            00       0112233322           234455566766  66665443 22   11         566654443  


Q ss_pred             -----CCCeEEEEEeCEEEEccCCCCCCCCCC-CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhh
Q 044575          154 -----KADKVVEEVFDAVVVATGHYSYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV  227 (454)
Q Consensus       154 -----~~~~~~~~~~d~vViAtG~~~~p~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~  227 (454)
                           .+++..++.||+||+|||  +.|..|+ +| .+.   .++++.+...... .+++++|||+|.+|+|+|..|++.
T Consensus       135 ~~~~~~~g~~~~i~ad~lViAtG--s~p~~~~~i~-~~~---~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~  207 (482)
T 1ojt_A          135 YEQAAPTGEKKIVAFKNCIIAAG--SRVTKLPFIP-EDP---RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTL  207 (482)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECCC--EEECCCSSCC-CCT---TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHH
T ss_pred             cccccccCcceEEEcCEEEECCC--CCCCCCCCCC-ccC---cEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHc
Confidence                 012234789999999999  7788776 55 222   3455544433322 368999999999999999999999


Q ss_pred             cCeEEEecccCCcCccchh--------hhccC-CCeEEcCceeEEecCC---cEEEeC----CCEEeeceEEEccCcccC
Q 044575          228 AKEVHLSAKSLNISEGLSK--------VISKH-NNLHLHPQIDCLREDG---RVTFVD----GCWVTADTILYCTGYSYS  291 (454)
Q Consensus       228 ~~~V~l~~r~~~~~~~~~~--------~l~~~-~~i~~~~~v~~v~~~~---~v~~~d----G~~i~~D~vI~atG~~~~  291 (454)
                      |.+|+++++.+++.+.+.+        .+.+. ++++.+..|+++..++   .|++.|    |+++++|.||+|+|++|+
T Consensus       208 G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~  287 (482)
T 1ojt_A          208 GSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN  287 (482)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred             CCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence            9999999999887554432        23232 4778888899987542   467777    788999999999999999


Q ss_pred             CcCC--C-------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          292 FPFL--D-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       292 ~~~l--~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .++|  .       ++|.|.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|+.
T Consensus       288 ~~~l~~~~~gl~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~  350 (482)
T 1ojt_A          288 GKLISAEKAGVAVTDRGFIEVDKQMR----------TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK  350 (482)
T ss_dssp             GGGTTGGGTTCCCCTTSCCCCCTTSB----------CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCChhhcCceeCCCCCEeeCCCcc----------cCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCC
Confidence            8874  2       235566665544          4579999999998654 45799999999999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=6e-33  Score=264.56  Aligned_cols=278  Identities=16%  Similarity=0.223  Sum_probs=200.1

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++.+||+||||||||++||.+|++.|++|+|||+. ..||.+...            |+              +++.   
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~------------~~--------------~~~~---   53 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQN------------SH--------------GFIT---   53 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSC------------BC--------------CSTT---
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeee------------cC--------------CccC---
Confidence            45699999999999999999999999999999986 456654311            10              1110   


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                           ..-.+..++.+...+...+++..  ..++..+..+...+.+         .++|.+.++.     ++.||+||||
T Consensus        54 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~v~~~~g~-----~~~a~~liiA  112 (304)
T 4fk1_A           54 -----RDGIKPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTG---------LFEIVTKDHT-----KYLAERVLLA  112 (304)
T ss_dssp             -----CTTBCHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTS---------CEEEEETTCC-----EEEEEEEEEC
T ss_pred             -----CCCCCHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCC---------cEEEEECCCC-----EEEeCEEEEc
Confidence                 01123456666655555555433  3455667777766544         7888887765     8899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCC-HHHHHHHHhhhcCeEEEecccCCcCccchhhh
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLS-GQDISMELVEVAKEVHLSAKSLNISEGLSKVI  248 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~s-g~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l  248 (454)
                      ||  +.|+.|++||.+.+.+..++.........+++++++|||+|.. +.|+|..+.+.+++|+++.+.+.+.+.+.+.+
T Consensus       113 TG--s~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l  190 (304)
T 4fk1_A          113 TG--MQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDEL  190 (304)
T ss_dssp             CC--CEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHH
T ss_pred             cC--CccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhh
Confidence            99  8999999999887766666655544444567788999988865 67888888899999999999888877777766


Q ss_pred             ccCCCeEEcCceeEEecCC----cEEEeCCCEEeeceEEEccCcccCCcCC-------CCCCceeeCCCCcccccCcccC
Q 044575          249 SKHNNLHLHPQIDCLREDG----RVTFVDGCWVTADTILYCTGYSYSFPFL-------DTKGIVVVDDDRVGPLYEHTFP  317 (454)
Q Consensus       249 ~~~~~i~~~~~v~~v~~~~----~v~~~dG~~i~~D~vI~atG~~~~~~~l-------~~~g~i~v~~~~~~~~~~~~~~  317 (454)
                      .+....+....++.+..++    .|.+.||+++++|.+|+++|..|+..++       +++|.|.+|++.+         
T Consensus       191 ~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~---------  261 (304)
T 4fk1_A          191 SNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR---------  261 (304)
T ss_dssp             HTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCB---------
T ss_pred             hccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCc---------
Confidence            6655333444577776443    4888999999998888888777765553       3556677776655         


Q ss_pred             CCCCCCceEeccccccc--chhHHHHHHHHHHHHH
Q 044575          318 PSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLL  350 (454)
Q Consensus       318 ~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i  350 (454)
                       |+.|++|++||+...+  ....|..|++.+|..+
T Consensus       262 -Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i  295 (304)
T 4fk1_A          262 -TSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAI  295 (304)
T ss_dssp             -CSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             -cCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHH
Confidence             5679999999998533  2457778888887655

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.2e-33  Score=284.27  Aligned_cols=294  Identities=16%  Similarity=0.211  Sum_probs=193.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccccccceecCCccccccCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      +||+|||||+||++||+.|++.|.+|+|||++ .+||+|.+.+|.|++.+ .+..+.....+.       ..+.+..   
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~-------~~~g~~~---   71 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENS-------RHYGFDT---   71 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHG-------GGGTCCC---
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccccccCCcchHHHHHHHHHHHHHHhh-------HhcCCcc---
Confidence            79999999999999999999999999999997 59999998888665411 000000000000       0111111   


Q ss_pred             CCCCCCCCHHHHH-----------HHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee------cC
Q 044575           92 RDVRRFPGHKELW-----------LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE------KK  154 (454)
Q Consensus        92 ~~~~~~~~~~~~~-----------~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~------~~  154 (454)
                       .  ......++.           .++....++.++.  +..++ +..++.   .         .+++....      ..
T Consensus        72 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~id~---~---------~v~v~~~~~~~~~~~~  133 (500)
T 1onf_A           72 -K--FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVD--LYEGT-ASFLSE---N---------RILIKGTKDNNNKDNG  133 (500)
T ss_dssp             -C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CCCC-------------------------------
T ss_pred             -C--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEeeC---C---------EEEEEecccccccccc
Confidence             0  011222222           2233444555655  44443 222321   1         33332200      00


Q ss_pred             CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575          155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS  234 (454)
Q Consensus       155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~  234 (454)
                      .+...++.||+||||||  +.|..|++||.+.    .+++.++.....  +++|+|||+|.+|+|+|..|++.|.+|+++
T Consensus       134 ~~~~~~~~~d~lViAtG--s~p~~p~i~G~~~----~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  205 (500)
T 1onf_A          134 PLNEEILEGRNILIAVG--NKPVFPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIF  205 (500)
T ss_dssp             -------CBSSEEECCC--CCBCCCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCceEEEeCEEEECCC--CCCCCCCCCCCCc----ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEE
Confidence            00122688999999999  8999999999742    456655544433  799999999999999999999999999999


Q ss_pred             cccCCcCccchh--------hhcc-CCCeEEcCceeEEecC--C--cEEEeCCCE-EeeceEEEccCcccCCcCC--CC-
Q 044575          235 AKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G--RVTFVDGCW-VTADTILYCTGYSYSFPFL--DT-  297 (454)
Q Consensus       235 ~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~--~v~~~dG~~-i~~D~vI~atG~~~~~~~l--~~-  297 (454)
                      ++.+.+.+.+++        .+.+ .++++.+..|+++..+  +  .|.+.||++ +++|.||+|+|++|+.++|  .. 
T Consensus       206 ~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~  285 (500)
T 1onf_A          206 ARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKL  285 (500)
T ss_dssp             CSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTT
T ss_pred             ecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhc
Confidence            999887554432        2222 3578888999999753  2  477789988 9999999999999998654  32 


Q ss_pred             -----CCceeeCCCCcccccCcccCCCCCCCceEecccc----------------------------------cc-cchh
Q 044575          298 -----KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPR----------------------------------KL-IGFP  337 (454)
Q Consensus       298 -----~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~----------------------------------~~-~~~~  337 (454)
                           +|.+.+|+..+          ++.|++|++||+.                                  .. ...+
T Consensus       286 g~~~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (500)
T 1onf_A          286 NVETNNNYIVVDENQR----------TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTP  355 (500)
T ss_dssp             TCCBSSSCEEECTTCB----------CSSSSEEECSTTEEEC------------------------------CBCCCCHH
T ss_pred             CccccCCEEEECCCcc----------cCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchh
Confidence                 34566666544          4569999999987                                  12 2357


Q ss_pred             HHHHHHHHHHHHHcCC
Q 044575          338 FFESQAKWIAQLLSGK  353 (454)
Q Consensus       338 ~a~~qa~~~a~~i~g~  353 (454)
                      .|..||+.+|+++.|.
T Consensus       356 ~A~~~g~~aa~~i~g~  371 (500)
T 1onf_A          356 VAINAGRLLADRLFLK  371 (500)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            8999999999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.6e-33  Score=284.78  Aligned_cols=305  Identities=17%  Similarity=0.166  Sum_probs=205.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++||+|||||+||+++|..|++.|++|+|||+++.+||.|.+.+|.|++.+..  ..+..+..+.....+.+....+  
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~--   82 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI--   82 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEE--
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCcc--
Confidence            468999999999999999999999999999999989999998877766541100  0111110000000000000000  


Q ss_pred             CCCCCCCCCC-CHH----HHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEe
Q 044575           89 KKGRDVRRFP-GHK----ELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVF  163 (454)
Q Consensus        89 ~~~~~~~~~~-~~~----~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (454)
                          +...+. ...    .+..++..++++.++.  +++++.+. ++.   .         .|+|.+.++   ...++.|
T Consensus        83 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~~---~---------~~~v~~~~G---~~~~i~~  140 (470)
T 1dxl_A           83 ----DLAAMMGQKDKAVSNLTRGIEGLFKKNKVT--YVKGYGKF-VSP---S---------EISVDTIEG---ENTVVKG  140 (470)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-EET---T---------EEEECCSSS---CCEEEEC
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-ecC---C---------EEEEEeCCC---ceEEEEc
Confidence                000000 011    2333445566667776  77776553 432   1         666655433   1236899


Q ss_pred             CEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc
Q 044575          164 DAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG  243 (454)
Q Consensus       164 d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~  243 (454)
                      |+||+|||  +.|..|+++|.+..  .++++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.+.
T Consensus       141 d~lIiAtG--s~p~~p~~~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  215 (470)
T 1dxl_A          141 KHIIIATG--SDVKSLPGVTIDEK--KIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT  215 (470)
T ss_dssp             SEEEECCC--EEECCBTTBCCCSS--SEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CEEEECCC--CCCCCCCCCCCCcc--cEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc
Confidence            99999999  88999988886541  2455544433322 4689999999999999999999999999999999887554


Q ss_pred             chh--------hhcc-CCCeEEcCceeEEecCC---cEEEe---CC--CEEeeceEEEccCcccCCcCC--CC-------
Q 044575          244 LSK--------VISK-HNNLHLHPQIDCLREDG---RVTFV---DG--CWVTADTILYCTGYSYSFPFL--DT-------  297 (454)
Q Consensus       244 ~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~---dG--~~i~~D~vI~atG~~~~~~~l--~~-------  297 (454)
                      +.+        .+.+ .++++.+..|+++..++   .+.+.   +|  +++++|.||+|+|++|+.+++  ..       
T Consensus       216 ~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~  295 (470)
T 1dxl_A          216 MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDK  295 (470)
T ss_dssp             SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCS
T ss_pred             ccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCC
Confidence            332        2222 35788888999997543   34554   55  578999999999999998873  32       


Q ss_pred             CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          298 KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       298 ~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +|.+.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|+.
T Consensus       296 ~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  343 (470)
T 1dxl_A          296 LGRILVNERFS----------TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV  343 (470)
T ss_dssp             SSCBCCCTTCB----------CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEeECcCCc----------cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence            24455554433          4579999999998654 35789999999999999863

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.7e-33  Score=281.92  Aligned_cols=299  Identities=18%  Similarity=0.186  Sum_probs=201.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cc-cccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HS-SVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++||+|||||+||+++|..|++.|++|+|||++ .+||.|.+.+|.|++.+ .. ..+..++ ........+.....   
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~-~~~~~g~~~~~~~~---   77 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAK-HSEEMGIKAENVTI---   77 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHH-TCGGGTEECCSCEE---
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHH-HHHhcCcccCCCcc---
Confidence            379999999999999999999999999999997 89999998877665411 00 0111111 00000000000000   


Q ss_pred             CCCCCCCC-CCHH----HHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575           90 KGRDVRRF-PGHK----ELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD  164 (454)
Q Consensus        90 ~~~~~~~~-~~~~----~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d  164 (454)
                         +...+ ....    .+..++.+.+++.++.  +..++.+. ++.   .         .+.|+..++    ..++.||
T Consensus        78 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-id~---~---------~v~V~~~~G----~~~i~~d  135 (455)
T 1ebd_A           78 ---DFAKVQEWKASVVKKLTGGVEGLLKGNKVE--IVKGEAYF-VDA---N---------TVRVVNGDS----AQTYTFK  135 (455)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTCE--EEESEEEE-EET---T---------EEEEEETTE----EEEEECS
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-ccC---C---------eEEEEeCCC----cEEEEeC
Confidence               00000 0011    1334445566666666  66676543 431   1         667765433    1368999


Q ss_pred             EEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc
Q 044575          165 AVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL  244 (454)
Q Consensus       165 ~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~  244 (454)
                      +||+|||  +.|..|+++|.+.   .+.++.+...... .+++|+|||+|.+|+|+|..+++.|.+|+++++.+.+.+.+
T Consensus       136 ~lViATG--s~p~~~~~~g~~~---~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  209 (455)
T 1ebd_A          136 NAIIATG--SRPIELPNFKFSN---RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF  209 (455)
T ss_dssp             EEEECCC--EEECCBTTBCCCS---SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS
T ss_pred             EEEEecC--CCCCCCCCCCccc---eEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc
Confidence            9999999  8899998888653   2445444332222 46899999999999999999999999999999988875543


Q ss_pred             hh--------hhcc-CCCeEEcCceeEEecCC---cEEEe---CCCEEeeceEEEccCcccCCcCC--CC-------CCc
Q 044575          245 SK--------VISK-HNNLHLHPQIDCLREDG---RVTFV---DGCWVTADTILYCTGYSYSFPFL--DT-------KGI  300 (454)
Q Consensus       245 ~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~---dG~~i~~D~vI~atG~~~~~~~l--~~-------~g~  300 (454)
                      .+        .+.+ .++++.+..|+++..++   .+.+.   +++++++|.||+|+|++|+.+++  +.       +|.
T Consensus       210 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~  289 (455)
T 1ebd_A          210 EKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGL  289 (455)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCC
Confidence            22        2222 35788888999987433   24444   45678999999999999998874  32       244


Q ss_pred             eeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                      +.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|+
T Consensus       290 i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  333 (455)
T 1ebd_A          290 IEVDQQCR----------TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH  333 (455)
T ss_dssp             BCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred             EeeCCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            44444433          4579999999998654 3578999999999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=1.3e-33  Score=285.95  Aligned_cols=303  Identities=16%  Similarity=0.149  Sum_probs=201.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc--ccccccceecCCcccccc-CCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH--SSVYASLRLTSPREIMGY-TDFPF   86 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~   86 (454)
                      +..+||+|||||++|+++|..|++.|++|+|||+++.+||+|.+.+|.|++.+.  ...+..+........+.+ .+   
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~---   79 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGD---   79 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSC---
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCC---
Confidence            345899999999999999999999999999999999999999988876654110  011111110111000000 00   


Q ss_pred             CCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           87 VLKKGRDVRRFPGHKELWL-----------YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                               ......++..           .+...+++.++.  +++++.+..    +..         .++|.+.++..
T Consensus        80 ---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~~----~~~---------~v~V~~~~G~~  135 (478)
T 1v59_A           80 ---------IKINVANFQKAKDDAVKQLTGGIELLFKKNKVT--YYKGNGSFE----DET---------KIRVTPVDGLE  135 (478)
T ss_dssp             ---------EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEEES----SSS---------EEEEECCTTCT
T ss_pred             ---------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEc----cCC---------eEEEEecCCCc
Confidence                     0012233322           234445556666  677766541    221         56666544310


Q ss_pred             Ce---EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEE
Q 044575          156 DK---VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVH  232 (454)
Q Consensus       156 ~~---~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~  232 (454)
                      ..   ...+.||+||+|||  +.|.  .+||.+.....+.++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+
T Consensus       136 ~~~~~~~~i~~d~lViAtG--s~p~--~~~g~~~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vt  210 (478)
T 1v59_A          136 GTVKEDHILDVKNIIVATG--SEVT--PFPGIEIDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVT  210 (478)
T ss_dssp             TCCSSCEEEEEEEEEECCC--EEEC--CCTTCCCCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             ccccccceEEeCEEEECcC--CCCC--CCCCCCCCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEE
Confidence            10   01289999999999  6663  35665422223555554443332 46999999999999999999999999999


Q ss_pred             EecccCCcCccchh--------hhcc-CCCeEEcCceeEEec--CC---cEEEe-----CCCEEeeceEEEccCcccCCc
Q 044575          233 LSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRE--DG---RVTFV-----DGCWVTADTILYCTGYSYSFP  293 (454)
Q Consensus       233 l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~--~~---~v~~~-----dG~~i~~D~vI~atG~~~~~~  293 (454)
                      ++++.+.+.+.+.+        .+.+ .++++.+..|+++..  ++   .|.+.     +++++++|.||+|+|++|+.+
T Consensus       211 lv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          211 VVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             EECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             EEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence            99999887554332        2222 357888888999875  33   35565     456789999999999999987


Q ss_pred             --CCCC-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          294 --FLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       294 --~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                        ++..       +|.|.+|+..+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       291 ~l~l~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  351 (478)
T 1v59_A          291 GLGAEKIGLEVDKRGRLVIDDQFN----------SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH  351 (478)
T ss_dssp             TSCTTTTTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCchhcCceeCCCCCEeECcCCc----------cCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence              5442       34455555433          4579999999998654 45799999999999998753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=2.8e-33  Score=282.84  Aligned_cols=299  Identities=16%  Similarity=0.134  Sum_probs=204.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-c-cccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-S-SVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++||+|||||+||++||..|++.|++|+|||+++.+||+|.+.+|.|++.+. . ..+..+..+.+.  +   +.+..  
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~--~---g~~~~--   74 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFAR--Y---GLMGG--   74 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHH--H---TEECG--
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHh--c---CcccC--
Confidence            3799999999999999999999999999999998999999988776654110 0 001111000000  0   00000  


Q ss_pred             CCCCCCCCCCHHHH-----------HHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKEL-----------WLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                          ........++           ...+..+.++.++.  +..++.+ .++.   .         .++|...++   ..
T Consensus        75 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i~~---~---------~~~v~~~~G---~~  132 (468)
T 2qae_A           75 ----EGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVT--YYKGEGS-FETA---H---------SIRVNGLDG---KQ  132 (468)
T ss_dssp             ----GGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEEEEEE-EEET---T---------EEEEEETTS---CE
T ss_pred             ----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-EeeC---C---------EEEEEecCC---ce
Confidence                0000112222           22345556666776  6666543 3432   1         566665433   22


Q ss_pred             EEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          159 VEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++.||+||+|||  +.|..|+++|.+..  .++++.+...... .+++++|||+|.+|+|+|..+++.|.+|+++++.+
T Consensus       133 ~~~~~d~lviAtG--~~p~~p~~~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  207 (468)
T 2qae_A          133 EMLETKKTIIATG--SEPTELPFLPFDEK--VVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP  207 (468)
T ss_dssp             EEEEEEEEEECCC--EEECCBTTBCCCSS--SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEcCEEEECCC--CCcCCCCCCCCCcC--ceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC
Confidence            4789999999999  88999988887541  2445444433222 46899999999999999999999999999999998


Q ss_pred             CcCccch--------hhh-cc-CCCeEEcCceeEEecCC---cEEEe--CC--CEEeeceEEEccCcccCCcCCC-----
Q 044575          239 NISEGLS--------KVI-SK-HNNLHLHPQIDCLREDG---RVTFV--DG--CWVTADTILYCTGYSYSFPFLD-----  296 (454)
Q Consensus       239 ~~~~~~~--------~~l-~~-~~~i~~~~~v~~v~~~~---~v~~~--dG--~~i~~D~vI~atG~~~~~~~l~-----  296 (454)
                      .+.+.++        +.+ .+ .++++.+..|+++..++   .+.+.  +|  +++++|.||+|+|++|+.+++.     
T Consensus       208 ~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g  287 (468)
T 2qae_A          208 RCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKIN  287 (468)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHT
T ss_pred             cccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcC
Confidence            8754432        234 33 35788888999997543   34555  67  5789999999999999988742     


Q ss_pred             ----CCCceeeCCCCcccccCcccCCCCCCCceEeccccc-cc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 ----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK-LI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 ----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~-~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                          ++|.|.+|++.+          ++.|++|++||+.. .+ ..+.|..||+.+|.++.|+.
T Consensus       288 l~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~  341 (468)
T 2qae_A          288 VAKNERGFVKIGDHFE----------TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKP  341 (468)
T ss_dssp             CCBCTTSCBCCCTTSB----------CSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             CccCCCCCEeECCCcc----------cCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCCC
Confidence                346677776554          45799999999987 43 45789999999999999863

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=3.7e-33  Score=281.84  Aligned_cols=296  Identities=18%  Similarity=0.209  Sum_probs=196.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..+||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.+|.|++.+ ............|..    .+++.   
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~----~g~~~---   74 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD----GGIAA---   74 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTT----TTSCC---
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhc----CCccC---
Confidence            4589999999999999999999999999999997 79999998888665411 100000000011100    01110   


Q ss_pred             CCCCCCCCCCHHHHH-------HHHHH--HHHHh----CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           90 KGRDVRRFPGHKELW-------LYLKD--FCQRF----GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~-------~yl~~--~~~~~----~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                         . .......++.       +++..  +.+.+    ++.  +..+ ++..++..            .++|.+.++   
T Consensus        75 ---~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~~~~~~~~------------~~~v~~~~g---  132 (467)
T 1zk7_A           75 ---T-VPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAIT--VVHG-EARFKDDQ------------SLTVRLNEG---  132 (467)
T ss_dssp             ---C-CCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEE--EEEE-EEEEEETT------------EEEEEETTS---
T ss_pred             ---C-CCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeE--EEEE-EEEEccCC------------EEEEEeCCC---
Confidence               0 0011223332       23321  22222    322  3222 35544421            566665433   


Q ss_pred             eEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          157 KVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                      ...++.||+||||||  +.|+.|++||.+...  .+++.+..... ..+++|+|||+|.+|+|+|..+++.+.+|+++++
T Consensus       133 ~~~~~~~d~lviAtG--s~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~  207 (467)
T 1zk7_A          133 GERVVMFDRCLVATG--ASPAVPPIPGLKESP--YWTSTEALASD-TIPERLAVIGSSVVALELAQAFARLGSKVTVLAR  207 (467)
T ss_dssp             SEEEEECSEEEECCC--EEECCCCCTTTTTSC--CBCHHHHHHCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             ceEEEEeCEEEEeCC--CCCCCCCCCCCCcCc--eecHHHHhccc-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEE
Confidence            234789999999999  899999999986532  23333332222 2468999999999999999999999999999999


Q ss_pred             cCCcCccchh--------hhc-cCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC--------
Q 044575          237 SLNISEGLSK--------VIS-KHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD--------  296 (454)
Q Consensus       237 ~~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~--------  296 (454)
                      .+.+.+ +..        .+. ..++++.+..|+++..++   .|.+ ++.++++|.||+|+|+.|+.+++.        
T Consensus       208 ~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~-~~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~  285 (467)
T 1zk7_A          208 NTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTT-THGELRADKLLVATGRTPNTRSLALDAAGVTV  285 (467)
T ss_dssp             SCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEE-TTEEEEESEEEECSCEEESCTTSCGGGGTCCB
T ss_pred             CCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEE-CCcEEEcCEEEECCCCCcCCCcCCchhcCCcC
Confidence            988754 322        222 235778888999987543   2344 466899999999999999987532        


Q ss_pred             -CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                       ++|.+.+|+...          ++.|++|++||+...+ ..+.|..||+.+|.++.|.
T Consensus       286 ~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  334 (467)
T 1zk7_A          286 NAQGAIVIDQGMR----------TSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG  334 (467)
T ss_dssp             CTTSCBCCCTTCB----------CSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence             234555555443          3569999999998754 3578999999999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=9.2e-33  Score=279.31  Aligned_cols=286  Identities=18%  Similarity=0.158  Sum_probs=187.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|+|||||+||++||..|++.  |.+|+|||+++.++.    .++.-      +.+      ...      .++  .  
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~----~~~gl------~~~------~~g------~~~--~--   57 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISY----GGCGI------PYY------VSG------EVS--N--   57 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccc----ccccc------chh------hcC------CCC--c--
Confidence            6899999999999999999998  899999999887531    11100      000      000      000  0  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        ....++...++..+...+.+++++.  ++++++|++++...            ..+.+.+..++...++.||+|||||
T Consensus        58 --~~~~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~------------~~v~~~~~~~g~~~~~~~d~lviAt  121 (472)
T 3iwa_A           58 --IESLQATPYNVVRDPEFFRINKDVE--ALVETRAHAIDRAA------------HTVEIENLRTGERRTLKYDKLVLAL  121 (472)
T ss_dssp             -------------------------CE--EECSEEEEEEETTT------------TEEEEEETTTCCEEEEECSEEEECC
T ss_pred             --hHHhccccchhccCHHHHhhhcCcE--EEECCEEEEEECCC------------CEEEEeecCCCCEEEEECCEEEEeC
Confidence              0011111233566777777777877  88899999998653            2344444222334478999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCC-------CCCCCCCeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCcCc
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRV-------PEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNISE  242 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~-------~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~~~  242 (454)
                      |  +.|..|++||.+. .+ .++.....+       .....+++++|||+|.+|+|+|..+++. +.+|+++.+.+.+.+
T Consensus       122 G--~~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~  197 (472)
T 3iwa_A          122 G--SKANRPPVEGMDL-AG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP  197 (472)
T ss_dssp             C--EEECCCSCTTTTS-BT-EEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST
T ss_pred             C--CCcCCCCCCCCCC-CC-EEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc
Confidence            9  8999999999863 22 222221110       0112468999999999999999999999 999999999887755


Q ss_pred             -cchh--------hhcc-CCCeEEcCceeEEec-CC--cEEEeCCCEEeeceEEEccCcccCCcCC-------CCCCcee
Q 044575          243 -GLSK--------VISK-HNNLHLHPQIDCLRE-DG--RVTFVDGCWVTADTILYCTGYSYSFPFL-------DTKGIVV  302 (454)
Q Consensus       243 -~~~~--------~l~~-~~~i~~~~~v~~v~~-~~--~v~~~dG~~i~~D~vI~atG~~~~~~~l-------~~~g~i~  302 (454)
                       .+..        .+.+ .++++.+..|+++.. ++  .|.+.||+++++|.||+|||++|+.+++       +++|.+.
T Consensus       198 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~  277 (472)
T 3iwa_A          198 GFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAII  277 (472)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEE
T ss_pred             cccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEE
Confidence             3322        2222 357888889999976 33  3678899999999999999999998763       3456777


Q ss_pred             eCCCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          303 VDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       303 v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +|++.+          ++.|++|++||+...           ...+.|..||+.+|++|.|+.
T Consensus       278 vd~~~~----------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  330 (472)
T 3iwa_A          278 VDTRMR----------TSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD  330 (472)
T ss_dssp             CCTTCB----------CSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred             ECCCcc----------cCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence            776554          456999999998731           234689999999999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=2.6e-33  Score=283.43  Aligned_cols=299  Identities=16%  Similarity=0.145  Sum_probs=205.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||+||+++|..|++.|++|+|||+++.+||+|.+.+|.|++.+..  ..+..+...      .+..+.++. 
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~------~~~~~g~~~-   78 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGT------DFASRGIEM-   78 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSS------HHHHTTEEE-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhh------hHhhCcccc-
Confidence            47999999999999999999999999999999989999999888766541110  001111000      000011100 


Q ss_pred             CCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                         .. ......++..+           +..+.++.++.  +..++. ..++.   .         .++|.+.++   ..
T Consensus        79 ---~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~-~~~~~---~---------~~~v~~~~g---g~  136 (474)
T 1zmd_A           79 ---SE-VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV--HVNGYG-KITGK---N---------QVTATKADG---GT  136 (474)
T ss_dssp             ---SC-EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEE-EEEET---T---------EEEEECTTS---CE
T ss_pred             ---CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEE-EEecC---C---------EEEEEecCC---Cc
Confidence               00 00122333222           34555566766  666653 33431   1         666665431   12


Q ss_pred             EEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          159 VEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++.||+||+|||  +.|..|+++|.+..  .++++.++..... .+++|+|||+|.+|+|+|..+++.|.+|+++++.+
T Consensus       137 ~~~~~d~lViAtG--s~p~~p~i~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  211 (474)
T 1zmd_A          137 QVIDTKNILIATG--SEVTPFPGITIDED--TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG  211 (474)
T ss_dssp             EEEEEEEEEECCC--EEECCCTTCCCCSS--SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEeCEEEECCC--CCCCCCCCCCCCcC--cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC
Confidence            3689999999999  88999999887542  2556555443333 36899999999999999999999999999999998


Q ss_pred             CcCc-cchh--------hhcc-CCCeEEcCceeEEecCC-c-EEE-------eCCCEEeeceEEEccCcccCCcCCC---
Q 044575          239 NISE-GLSK--------VISK-HNNLHLHPQIDCLREDG-R-VTF-------VDGCWVTADTILYCTGYSYSFPFLD---  296 (454)
Q Consensus       239 ~~~~-~~~~--------~l~~-~~~i~~~~~v~~v~~~~-~-v~~-------~dG~~i~~D~vI~atG~~~~~~~l~---  296 (454)
                      .+.+ .+.+        .+.+ .++++.+..|+++..++ . +.+       .+++++++|.||+|+|++|+.++|.   
T Consensus       212 ~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~  291 (474)
T 1zmd_A          212 HVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEE  291 (474)
T ss_dssp             SSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHH
T ss_pred             ccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchh
Confidence            8765 4332        2222 35788888999987543 2 433       2556799999999999999988732   


Q ss_pred             ------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 ------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 ------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                            ++|.|.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|+.
T Consensus       292 ~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  346 (474)
T 1zmd_A          292 LGIELDPRGRIPVNTRFQ----------TKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGA  346 (474)
T ss_dssp             HTCCCCTTSCCCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCccCCCCCEEECcCCc----------cCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCCC
Confidence                  245566666544          4579999999998654 45799999999999999863

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=3.3e-33  Score=284.02  Aligned_cols=299  Identities=18%  Similarity=0.175  Sum_probs=195.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC--------CCCCcccccCCCCCCCCcc-cc-ccccceecCCcccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN--------HDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGY   81 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~--------~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~   81 (454)
                      .|||+||||||||++||..+++.|.+|+|||+.        ..+||+|.+.+|+|+|.+. +. .+...+.+.......+
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            489999999999999999999999999999964        3589999999999987221 11 1111111111000000


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------HhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           82 TDFPFVLKKGRDVRRFPGHKELWLYLKDFCQ-----------RFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      ....            ....++.++.++..+           +.++.   .+.....-++..            ...|..
T Consensus       122 ~~~~------------~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~---~i~G~a~f~~~~------------~v~V~~  174 (542)
T 4b1b_A          122 DNLK------------HDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK---YINGLAKLKDKN------------TVSYYL  174 (542)
T ss_dssp             EEEE------------ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECEEEEEEETT------------EEEEEE
T ss_pred             Cccc------------ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEeeeEEEcCCC------------cceEee
Confidence            0000            123444444443332           22332   222222222211            333333


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE  230 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~  230 (454)
                      .+. .....++++|++|||||  ++|.+|+.++...  ...+.+........ .+++++|||||++|+|+|..++++|.+
T Consensus       175 ~~~-~~~~~~i~a~~iiIATG--s~P~~P~~~~~~~--~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~  248 (542)
T 4b1b_A          175 KGD-LSKEETVTGKYILIATG--CRPHIPDDVEGAK--ELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLNSLGYD  248 (542)
T ss_dssp             C---CCCEEEEEEEEEEECCC--EEECCCSSSBTHH--HHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             ccc-CCceEEEeeeeEEeccC--CCCCCCCcccCCC--ccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHHhcCCe
Confidence            321 13355789999999999  9999986443321  12334444333333 348999999999999999999999999


Q ss_pred             EEEecccCCcCccchhh--------hc-cCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCC-
Q 044575          231 VHLSAKSLNISEGLSKV--------IS-KHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDT-  297 (454)
Q Consensus       231 V~l~~r~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-  297 (454)
                      ||++.|.. +++.+++.        +. +...++.+..++++...+   .|.+.+++++++|.|++|+|++||++.|.- 
T Consensus       249 VTii~~~~-~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le  327 (542)
T 4b1b_A          249 VTVAVRSI-VLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLE  327 (542)
T ss_dssp             EEEEESSC-SSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGG
T ss_pred             EEEecccc-cccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcc
Confidence            99998754 44443332        22 234778888888886433   466778889999999999999999987651 


Q ss_pred             --------CCc-eeeCCCCcccccCcccCCCCCCCceEecccccc-c-chhHHHHHHHHHHHHHcCCC
Q 044575          298 --------KGI-VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-I-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       298 --------~g~-i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                              .+. +.+|+.++          ++.|++|++||+... + ..+.|..|++.++.++.|..
T Consensus       328 ~~gv~~~~~~~~i~vd~~~~----------Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~  385 (542)
T 4b1b_A          328 SLNMNVNKSNNKIIADHLSC----------TNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDS  385 (542)
T ss_dssp             GTTCCEETTTTEECCCTTSB----------CSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             cceeeecccCceEecccccc----------ccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCC
Confidence                    122 23344443          567999999999854 3 34899999999999998864

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.3e-32  Score=274.57  Aligned_cols=275  Identities=19%  Similarity=0.254  Sum_probs=193.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||+||+++|..|++.  +.+|+|||+++.+++....                    .|.          .  
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~--------------------~p~----------~--   50 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG--------------------IPY----------V--   50 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC--------------------Ccc----------c--
Confidence            37999999999999999999998  7899999998865422100                    000          0  


Q ss_pred             CCCCCCCCCCHHHHHHH-HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           90 KGRDVRRFPGHKELWLY-LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                          .......+++..+ .+.+.+++++.  ++++++|.+++..            .++|.+.++    ..++.||+|||
T Consensus        51 ----~~~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~~------------~~~v~~~~g----~~~~~~d~lvi  108 (449)
T 3kd9_A           51 ----VEGLSTPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDTG------------YVRVRENGG----EKSYEWDYLVF  108 (449)
T ss_dssp             -------------------CTHHHHTTCE--EETTCEEEEECSS------------EEEEECSSS----EEEEECSEEEE
T ss_pred             ----cCCCCCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEecC------------CCEEEECCc----eEEEEcCEEEE
Confidence                0000111223332 23455677887  8899999998654            566755332    23689999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecC-------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIY-------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~-------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      |||  +.|+.|++||.+...  ++.....       ..+..+.+++|+|||+|.+|+|+|..+++.|.+|++++|.+++.
T Consensus       109 AtG--~~p~~p~i~G~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  184 (449)
T 3kd9_A          109 ANG--ASPQVPAIEGVNLKG--VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVL  184 (449)
T ss_dssp             CCC--EEECCCSCBTTTSTT--EECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCC--CCCCCCCCCCCCCCC--EEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            999  899999999976421  1111111       01123467899999999999999999999999999999998875


Q ss_pred             cc-ch--------hhhccCCCeEEcCceeEEecCC--cEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceee
Q 044575          242 EG-LS--------KVISKHNNLHLHPQIDCLREDG--RVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVV  303 (454)
Q Consensus       242 ~~-~~--------~~l~~~~~i~~~~~v~~v~~~~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v  303 (454)
                      +. +.        +.+.+.++++.+..+.++..++  ..++.+|+++++|.||+|||++|+.+++.       ++|.+.+
T Consensus       185 ~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~v  264 (449)
T 3kd9_A          185 RRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWT  264 (449)
T ss_dssp             TTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCC
T ss_pred             hhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEE
Confidence            44 32        2333447788889999997654  24577888999999999999999987643       3455666


Q ss_pred             CCCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |+..+          ++.|++|++||+...           ...+.|..||+.+|+++.|+.
T Consensus       265 d~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~  316 (449)
T 3kd9_A          265 NEKMQ----------TSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE  316 (449)
T ss_dssp             CTTCB----------CSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCc----------cCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCC
Confidence            66544          457999999999731           234789999999999999874

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=283.44  Aligned_cols=300  Identities=16%  Similarity=0.208  Sum_probs=199.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccc-cccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSV-YASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+|||||+||+++|..|++.|.+|+|||++ .+||+|.+.+|.|++.+ .+.. +..++ +.       ..+.+..
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~-~~-------~~~g~~~   80 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVS-HA-------NEYGLYQ   80 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHT-TT-------TTTTBST
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHH-hH-------HhcCccc
Confidence            4589999999999999999999999999999997 79999998887765411 0000 00010 00       0111100


Q ss_pred             CCCCCC-CCCCCHHHHHHHHH-----------HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           89 KKGRDV-RRFPGHKELWLYLK-----------DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        89 ~~~~~~-~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                      ...... .......++.++.+           ...++.++.  +..+ ++..+   +..         .+.|...++   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i---~~~---------~~~v~~~~g---  142 (479)
T 2hqm_A           81 NLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVD--VVFG-WARFN---KDG---------NVEVQKRDN---  142 (479)
T ss_dssp             TSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE-EEEEC---TTS---------CEEEEESSS---
T ss_pred             ccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEe---eCC---------EEEEEeCCC---
Confidence            000000 01122334433332           233344443  3333 34433   211         556655432   


Q ss_pred             eEEEEEeCEEEEccCCCCCCCCC-CCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          157 KVVEEVFDAVVVATGHYSYPRLP-SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~~p~~p-~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                      ...++.||+||||||  +.|..| ++||.+.    .+++..+.... ..+++++|||+|.+|+|+|..+++.|.+|++++
T Consensus       143 ~~~~~~~d~lviAtG--s~p~~p~~i~g~~~----~~~~~~~~~l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~  215 (479)
T 2hqm_A          143 TTEVYSANHILVATG--GKAIFPENIPGFEL----GTDSDGFFRLE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVI  215 (479)
T ss_dssp             CCEEEEEEEEEECCC--EEECCCTTSTTGGG----SBCHHHHHHCS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cEEEEEeCEEEEcCC--CCCCCCCCCCCccc----ccchHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence            223688999999999  899999 8998742    23333321111 246899999999999999999999999999999


Q ss_pred             ccCCcCccchhh--------hc-cCCCeEEcCceeEEecC--C---cEEEeCC-CEEeeceEEEccCcccCCcC-CC---
Q 044575          236 KSLNISEGLSKV--------IS-KHNNLHLHPQIDCLRED--G---RVTFVDG-CWVTADTILYCTGYSYSFPF-LD---  296 (454)
Q Consensus       236 r~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~--~---~v~~~dG-~~i~~D~vI~atG~~~~~~~-l~---  296 (454)
                      +.+.+.+.+++.        +. ..++++.+..|+++..+  +   .|.+.|| +++++|.||+|+|++|+..+ +.   
T Consensus       216 ~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~g  295 (479)
T 2hqm_A          216 RGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVG  295 (479)
T ss_dssp             SSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGT
T ss_pred             eCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcC
Confidence            998875544332        22 23578888999999753  2   4677888 78999999999999999854 33   


Q ss_pred             ----CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCCC
Q 044575          297 ----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 ----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                          ++|.+.+|+...          ++.|++|++||+... ...+.|..||+.+|.++.|..
T Consensus       296 l~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  348 (479)
T 2hqm_A          296 IKLNSHDQIIADEYQN----------TNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPE  348 (479)
T ss_dssp             CCBCTTSCBCCCTTCB----------CSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCG
T ss_pred             ceECCCCCEeECCCCc----------cCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence                234555555443          457999999999754 356899999999999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.3e-33  Score=277.08  Aligned_cols=265  Identities=11%  Similarity=0.168  Sum_probs=187.6

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..++.+|+|||||+||++||..|...+.+|+|||+++.++..    .+         .       .++.+   .+.    
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~----~~---------~-------l~~~l---~g~----   58 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY----RP---------R-------LNEII---AKN----   58 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC----GG---------G-------HHHHH---HSC----
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc----cC---------h-------hhHHH---cCC----
Confidence            346789999999999999999997778999999998865311    00         0       00000   000    


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                               .+.+++..+..++.+++++.  ++++++|++|+..            ..+|++.++.     ++.||+|||
T Consensus        59 ---------~~~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~------------~~~v~~~~g~-----~~~yd~lvl  110 (385)
T 3klj_A           59 ---------KSIDDILIKKNDWYEKNNIK--VITSEFATSIDPN------------NKLVTLKSGE-----KIKYEKLII  110 (385)
T ss_dssp             ---------CCGGGTBSSCHHHHHHTTCE--EECSCCEEEEETT------------TTEEEETTSC-----EEECSEEEE
T ss_pred             ---------CCHHHccCCCHHHHHHCCCE--EEeCCEEEEEECC------------CCEEEECCCC-----EEECCEEEE
Confidence                     01112222334455667877  8899999999865            4467777655     789999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCC-----CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPF-----RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG  243 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~-----~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~  243 (454)
                      |||  +.|+.|++||.+    .+++.....+....     .+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.+.
T Consensus       111 AtG--~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          111 ASG--SIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             CCC--EEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             ecC--CCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            999  899999999986    23332222111111     2689999999999999999999999999999999887543


Q ss_pred             -ch--------hhhccC-CCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCC-----ceeeCCCCc
Q 044575          244 -LS--------KVISKH-NNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKG-----IVVVDDDRV  308 (454)
Q Consensus       244 -~~--------~~l~~~-~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g-----~i~v~~~~~  308 (454)
                       +.        +.+.+. ++++.+..++++          |+++++|.||+|||++|+++++...|     .+.+|+...
T Consensus       185 ~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i----------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~gi~vd~~~~  254 (385)
T 3klj_A          185 QLDRDGGLFLKDKLDRLGIKIYTNSNFEEM----------GDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHME  254 (385)
T ss_dssp             TSCHHHHHHHHHHHHTTTCEEECSCCGGGC----------HHHHHHSEEEECCCEEECCGGGTTSCCCBSSSEEECTTCB
T ss_pred             hcCHHHHHHHHHHHHhCCCEEEeCCEEEEc----------CeEEecCeEEECcCcccChhhhhhcCCCcCCCEEECCCcc
Confidence             22        222222 345555555443          66788999999999999998876422     255555443


Q ss_pred             ccccCcccCCCCCCCceEeccccc-----ccchhHHHHHHHHHHHHHcCCC
Q 044575          309 GPLYEHTFPPSLAPSLSFVGIPRK-----LIGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       309 ~~~~~~~~~~~~~p~l~~iG~~~~-----~~~~~~a~~qa~~~a~~i~g~~  354 (454)
                                ++.|++|++||+..     ...++.|..||+.+|++|.|+.
T Consensus       255 ----------t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~  295 (385)
T 3klj_A          255 ----------TSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED  295 (385)
T ss_dssp             ----------CSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ----------cCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence                      45799999999985     2345789999999999999874

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=1.2e-33  Score=286.63  Aligned_cols=293  Identities=15%  Similarity=0.141  Sum_probs=199.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccc-cccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSV-YASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+||||||||++||..|++.|.+|+|||++ .+||+|.+.+|.|++.+ .+.. +... .       .+..+.++. 
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~gciPsk~l~~~a~~~~~~-~-------~~~~~g~~~-   77 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARVGCMPSKLLIAAADASYHA-S-------QTDLFGIQV-   77 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHHSHHHHHHHHHHHHHHHHH-T-------CGGGGTEEC-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccccChhcCHHHHHHHHHHHHH-h-------hhhhcCcCC-
Confidence            489999999999999999999999999999996 59999999999877521 1110 1100 0       011111110 


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCC---------ccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLR---------EMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE  160 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~---------~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (454)
                          ........++.+++.++.+++...         ..-.+..+..-++              .++|.+.++.     +
T Consensus        78 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--------------~~~v~~~~~~-----~  134 (492)
T 3ic9_A           78 ----DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--------------EHTLQVDDHS-----Q  134 (492)
T ss_dssp             ----SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--------------TTEEEETTTE-----E
T ss_pred             ----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--------------CCEEEEcCCc-----E
Confidence                001134566767666655544211         0000011111111              4567665433     7


Q ss_pred             EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +.||+||||||  +.|..|+++|..  ...++++....... ..+++|+|||+|.+|+|+|..|++.|.+|++++|.+++
T Consensus       135 ~~~d~lViATG--s~p~~p~~~~~~--~~~v~t~~~~~~~~-~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          135 VIAKRIVIATG--SRPNYPEFLAAA--GSRLLTNDNLFELN-DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             EEEEEEEECCC--EECCCCHHHHTT--GGGEECHHHHTTCS-SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             EEeCEEEEccC--CCCcCCCCCCcc--CCcEEcHHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            89999999999  899998766532  22344444443322 24799999999999999999999999999999999887


Q ss_pred             Cccch--------hhhccCCCeEEcCceeEEecCC---cEEEe--CC--CEEeeceEEEccCcccCCcCCC---------
Q 044575          241 SEGLS--------KVISKHNNLHLHPQIDCLREDG---RVTFV--DG--CWVTADTILYCTGYSYSFPFLD---------  296 (454)
Q Consensus       241 ~~~~~--------~~l~~~~~i~~~~~v~~v~~~~---~v~~~--dG--~~i~~D~vI~atG~~~~~~~l~---------  296 (454)
                      .+.+.        +.+.+.++++.+..|+++..++   .+.+.  +|  +++++|.||+|||++|+.++|.         
T Consensus       210 l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~  289 (492)
T 3ic9_A          210 ANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELD  289 (492)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBC
T ss_pred             cccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEEC
Confidence            54432        2233336788888899987432   34554  67  5788999999999999998742         


Q ss_pred             CCCceeeC-CCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcC
Q 044575          297 TKGIVVVD-DDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSG  352 (454)
Q Consensus       297 ~~g~i~v~-~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g  352 (454)
                      ++|.+.+| +...          ++.|++|++||+...+. .+.|..||+.+|.++.+
T Consensus       290 ~~G~i~vd~~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~  337 (492)
T 3ic9_A          290 KKNSPLFDELTLQ----------TSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA  337 (492)
T ss_dssp             TTCCBCCCTTTCB----------CSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEeECccccc----------CCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence            23445555 3333          45699999999987544 47999999999999987

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=5.5e-33  Score=280.02  Aligned_cols=289  Identities=18%  Similarity=0.142  Sum_probs=199.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cc-cccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HS-SVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||+||++||..|++.|.+|+|||+++ +||+|.+.+|.|++.+ .+ ..+..++.        +..+.++. 
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~--------~~~~g~~~-   75 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKV--------AEGFGLKA-   75 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHH--------HGGGTEEC-
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHh--------HHhcCCCC-
Confidence            5899999999999999999999999999999987 9999998888765411 00 11111110        00000000 


Q ss_pred             CCCCCCCCCCHHHH-------HHH----HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKEL-------WLY----LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~-------~~y----l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                         .  ......++       .++    +..+.++.++.  +..++.+. ++              .++|++. +.    
T Consensus        76 ---~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~--------------~~~v~v~-g~----  128 (464)
T 2eq6_A           76 ---K--PELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVE--LLRGFARL-VG--------------PKEVEVG-GE----  128 (464)
T ss_dssp             ---C--CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCEEE-EE--------------TTEEEET-TE----
T ss_pred             ---C--CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEeeeEEE-cc--------------CCEEEEc-cE----
Confidence               0  00112222       222    23445556666  55665432 32              2335443 22    


Q ss_pred             EEEEeCEEEEccCCCCCCCCCC-CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          159 VEEVFDAVVVATGHYSYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                       ++.||+||||||  +.|..|+ +||.    ..++++.++.......+++|+|||+|.+|+|+|..|++.|.+|+++++.
T Consensus       129 -~~~~d~lViATG--s~p~~p~gi~~~----~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  201 (464)
T 2eq6_A          129 -RYGAKSLILATG--SEPLELKGFPFG----EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYM  201 (464)
T ss_dssp             -EEEEEEEEECCC--EEECCBTTBCCS----SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             -EEEeCEEEEcCC--CCCCCCCCCCCC----CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcC
Confidence             689999999999  8898885 6652    1355555554443334689999999999999999999999999999999


Q ss_pred             CCcCccchh--------hhcc-CCCeEEcCceeEEecCC---cEEEe-C--CC--EEeeceEEEccCcccCCcCCC----
Q 044575          238 LNISEGLSK--------VISK-HNNLHLHPQIDCLREDG---RVTFV-D--GC--WVTADTILYCTGYSYSFPFLD----  296 (454)
Q Consensus       238 ~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~-d--G~--~i~~D~vI~atG~~~~~~~l~----  296 (454)
                      +.+.+.+.+        .+.+ .++++.+..|+++..++   .|.+. +  |+  ++++|.||+|+|++|+.+++.    
T Consensus       202 ~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~  281 (464)
T 2eq6_A          202 PEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKA  281 (464)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHH
T ss_pred             CccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhc
Confidence            877544332        2222 35788888899887543   35665 7  87  789999999999999988641    


Q ss_pred             -----CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 -----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                           ++|.+.+|+..+          ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       282 g~~~~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~  335 (464)
T 2eq6_A          282 GVKVDERGFIRVNARME----------TSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKD  335 (464)
T ss_dssp             TCCBCTTSCBCCCTTCB----------CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CceecCCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence                 345566666544          4579999999998654 35789999999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=8e-33  Score=286.18  Aligned_cols=282  Identities=17%  Similarity=0.195  Sum_probs=200.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|+|||||+||++||..|++.  +.+|+|||+++.++...    +            .+    |.   ...+       
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~----~------------~l----~~---~~~~-------   51 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFAN----C------------GL----PY---HISG-------   51 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCG----G------------GH----HH---HHTS-------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccc----c------------Cc----hH---HhcC-------
Confidence            5899999999999999999998  78999999988664110    0            00    00   0000       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                          ...+....+.+++..+.+++++.  ++++++|++|+....          .  +++.+..++...++.||+|||||
T Consensus        52 ----~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~----------~--v~~~~~~~g~~~~~~~d~lviAt  113 (565)
T 3ntd_A           52 ----EIAQRSALVLQTPESFKARFNVE--VRVKHEVVAIDRAAK----------L--VTVRRLLDGSEYQESYDTLLLSP  113 (565)
T ss_dssp             ----SSCCGGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTTT----------E--EEEEETTTCCEEEEECSEEEECC
T ss_pred             ----CcCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCCC----------E--EEEEecCCCCeEEEECCEEEECC
Confidence                00011233445667777888887  889999999986532          3  44443222334478999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS  245 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~  245 (454)
                      |  +.|+.|++||.+.......++......     ....+++|+|||+|.+|+|+|..+++.|.+|++++|.+.+.+.+.
T Consensus       114 G--~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~  191 (565)
T 3ntd_A          114 G--AAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVD  191 (565)
T ss_dssp             C--EEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSC
T ss_pred             C--CCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcC
Confidence            9  899999999986433211111100000     113568999999999999999999999999999999988755433


Q ss_pred             hh--------hc-cCCCeEEcCceeEEec--------------------CC--cEEEeCCCEEeeceEEEccCcccCCcC
Q 044575          246 KV--------IS-KHNNLHLHPQIDCLRE--------------------DG--RVTFVDGCWVTADTILYCTGYSYSFPF  294 (454)
Q Consensus       246 ~~--------l~-~~~~i~~~~~v~~v~~--------------------~~--~v~~~dG~~i~~D~vI~atG~~~~~~~  294 (454)
                      +.        +. ..++++.+..|+++..                    ++  .+++.+|+++++|.||+|||++|++++
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l  271 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQL  271 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHH
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHH
Confidence            22        22 2357888889998865                    22  467788999999999999999999876


Q ss_pred             CC-------CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          295 LD-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       295 l~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +.       ++|.+.+|+..+          ++.|++|++||+...           ...+.|..||+.+|++|.|+.
T Consensus       272 ~~~~g~~~~~~g~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  339 (565)
T 3ntd_A          272 ARDAGLAIGELGGIKVNAMMQ----------TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE  339 (565)
T ss_dssp             HHHHTCCBCTTSSBCCCTTCB----------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCcccCCCCCEEECCCcc----------cCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence            42       446666666544          457999999998721           235689999999999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=4.6e-33  Score=284.15  Aligned_cols=300  Identities=16%  Similarity=0.177  Sum_probs=196.2

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--------CCCcccccCCCCCCCCcccc-ccccceecCCcccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--------DVGGQWLYDPNTDQTEVHSS-VYASLRLTSPREIM   79 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--------~~GG~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (454)
                      |+..+||+||||||||++||..|++.|.+|+|||+++        .+||+|.+.+|.|++.+... .+..       ...
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~-------~~~  101 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQ-------ALQ  101 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHH-------HHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHH-------HHH
Confidence            4456899999999999999999999999999999964        79999999988876521110 0000       000


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQR-----------FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV  148 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v  148 (454)
                      .+..+.+..    ..........+.++.+.+.++           .++.   .+...+..++..            .+.|
T Consensus       102 ~~~~~g~~~----~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~---~i~g~a~~~d~~------------~v~v  162 (519)
T 3qfa_A          102 DSRNYGWKV----EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV---YENAYGQFIGPH------------RIKA  162 (519)
T ss_dssp             HHHHTTBCC----CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEETT------------EEEE
T ss_pred             HHHhcCccc----CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeeCC------------EEEE
Confidence            111122211    112234556666666554433           2332   223344444321            4444


Q ss_pred             EEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhc
Q 044575          149 KSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVA  228 (454)
Q Consensus       149 ~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~  228 (454)
                      ...++   ...++.||+||||||  +.|+.|++||...+   .+++..+.... ...++++|||+|.+|+|+|..+++.|
T Consensus       163 ~~~~g---~~~~i~~d~lViATG--s~p~~p~i~G~~~~---~~t~~~~~~l~-~~~~~vvVIGgG~ig~E~A~~l~~~G  233 (519)
T 3qfa_A          163 TNNKG---KEKIYSAERFLIATG--ERPRYLGIPGDKEY---CISSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIG  233 (519)
T ss_dssp             ECTTC---CCCEEEEEEEEECCC--EEECCCCCTTHHHH---CBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTT
T ss_pred             EcCCC---CEEEEECCEEEEECC--CCcCCCCCCCccCc---eEcHHHHhhhh-hcCCeEEEECCcHHHHHHHHHHHHcC
Confidence            43322   223689999999999  89999999996542   33443333322 23467999999999999999999999


Q ss_pred             CeEEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEec--C---Cc--EEE--eCCC---EEeeceEEEccC
Q 044575          229 KEVHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRE--D---GR--VTF--VDGC---WVTADTILYCTG  287 (454)
Q Consensus       229 ~~V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~--~---~~--v~~--~dG~---~i~~D~vI~atG  287 (454)
                      .+|+++.|. .+.+.+++        .+.+ .++++.+..++++..  +   +.  +.+  .+|+   ++++|.||+|+|
T Consensus       234 ~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G  312 (519)
T 3qfa_A          234 LDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIG  312 (519)
T ss_dssp             CCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSC
T ss_pred             CeEEEEecc-cccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecC
Confidence            999999985 44333322        2222 346777766665542  1   22  322  3553   467999999999


Q ss_pred             cccCCcCCC----------CCCceeeCCCCcccccCcccCCCCCCCceEecccc-cc-cchhHHHHHHHHHHHHHcCCC
Q 044575          288 YSYSFPFLD----------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPR-KL-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       288 ~~~~~~~l~----------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~-~~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      ++|++++|.          ++|.+.+|++.+          ++.|+||++||+. .. ...+.|..||+.+|+++.|..
T Consensus       313 ~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~----------Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~  381 (519)
T 3qfa_A          313 RDACTRKIGLETVGVKINEKTGKIPVTDEEQ----------TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS  381 (519)
T ss_dssp             EEESCSSSCSTTTTCCCCTTTCCBCCCTTSB----------CSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CcccCCCCChhhcCcEEcCCCCeEeeCCCCc----------cCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence            999988742          134455554433          4579999999998 33 345899999999999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=9.1e-32  Score=270.45  Aligned_cols=276  Identities=17%  Similarity=0.192  Sum_probs=192.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+|||||+||++||..|++.  |.+|+|||+++.+|...    +..      ..+.      ..              
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~----~~~------~~~~------~~--------------   52 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLS----GGL------SAYF------NH--------------   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCC----C----------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccC----ccc------hhhh------cC--------------
Confidence            5899999999999999999998  89999999998776211    000      0000      00              


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           .+...+++..+..+...++++.  ++++++|++++....          .+.+...    ....++.||+|||||
T Consensus        53 -----~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~~----------~v~v~~~----~~~~~~~~d~lviAt  111 (452)
T 3oc4_A           53 -----TINELHEARYITEEELRRQKIQ--LLLNREVVAMDVENQ----------LIAWTRK----EEQQWYSYDKLILAT  111 (452)
T ss_dssp             -------------CCCCHHHHHHTTEE--EECSCEEEEEETTTT----------EEEEEET----TEEEEEECSEEEECC
T ss_pred             -----CCCCHHHhhcCCHHHHHHCCCE--EEECCEEEEEECCCC----------EEEEEec----CceEEEEcCEEEECC
Confidence                 0000011111123344556765  778999999986532          4555411    123478999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-c
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEP-----FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-L  244 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~-----~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-~  244 (454)
                      |  +.|..|++||.+.  ..+++...+.....     ..+++++|||+|.+|+|+|..+++.|.+|+++.+.+.+.+. +
T Consensus       112 G--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~  187 (452)
T 3oc4_A          112 G--ASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYF  187 (452)
T ss_dssp             C--CCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTC
T ss_pred             C--cccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccC
Confidence            9  8999999999864  22444444333222     25689999999999999999999999999999999887543 2


Q ss_pred             h--------hhhccC-CCeEEcCceeEEec-CCc--EEEeCCCEEeeceEEEccCcccCCcCCCC------CCceeeCCC
Q 044575          245 S--------KVISKH-NNLHLHPQIDCLRE-DGR--VTFVDGCWVTADTILYCTGYSYSFPFLDT------KGIVVVDDD  306 (454)
Q Consensus       245 ~--------~~l~~~-~~i~~~~~v~~v~~-~~~--v~~~dG~~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~  306 (454)
                      +        +.+.+. ++++.++.|+++.. ++.  |.+.+| ++++|.||+|||++|+.+++..      +|.+.+|++
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~  266 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAY  266 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTT
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcC
Confidence            2        223333 47888899999973 333  555555 8999999999999999988653      344455544


Q ss_pred             CcccccCcccCCCCCCCceEeccccccc-----------chhHHHHHHHHHHHHHcCCC
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKLI-----------GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+          ++.|++|++||+...+           ..+.|..||+.+|.++.|..
T Consensus       267 ~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~  315 (452)
T 3oc4_A          267 LQ----------TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT  315 (452)
T ss_dssp             CB----------CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred             cc----------CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence            33          4579999999998642           45789999999999998864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=4.5e-33  Score=280.99  Aligned_cols=292  Identities=16%  Similarity=0.160  Sum_probs=201.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-c-ccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-H-SSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+|||||+||+++|..|++.|++|+|||++ .+||.|.+.+|.|++.+ . ...+..+....       ..+.++.  
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~-------~~~g~~~--   73 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDA-------KAFGISG--   73 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHT-------TTTTEEE--
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHH-------HhcCCCC--
Confidence            79999999999999999999999999999997 79999987776654311 0 00111111000       0010000  


Q ss_pred             CCCCCCCCCHH-----------HHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           91 GRDVRRFPGHK-----------ELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        91 ~~~~~~~~~~~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                        .  ......           .+..++.+.+++.++.  ++.++.+. +   +..         .++|.+.++   ...
T Consensus        74 --~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~--~~~g~~~~-i---d~~---------~v~V~~~~G---~~~  131 (464)
T 2a8x_A           74 --E--VTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKIT--EIHGYGTF-A---DAN---------TLLVDLNDG---GTE  131 (464)
T ss_dssp             --C--CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECEEEEE-S---SSS---------EEEEEETTS---CCE
T ss_pred             --C--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e---cCC---------eEEEEeCCC---ceE
Confidence              0  000111           2333455666666766  66665442 2   222         566665433   113


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++.||+||+|||  +.|..|+++|.+.   ...++.+...... .+++|+|||+|.+|+|+|..+++.|.+|+++++.++
T Consensus       132 ~~~~d~lViAtG--~~~~~~~~~g~~~---~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          132 SVTFDNAIIATG--SSTRLVPGTSLSA---NVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             EEEEEEEEECCC--EEECCCTTCCCBT---TEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEcCEEEECCC--CCCCCCCCCCCCc---eEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            789999999999  7888888888654   2444444332222 468999999999999999999999999999999988


Q ss_pred             cCccchhh--------hc-cCCCeEEcCceeEEecCC---cEEEe-CC--CEEeeceEEEccCcccCCcCCC--------
Q 044575          240 ISEGLSKV--------IS-KHNNLHLHPQIDCLREDG---RVTFV-DG--CWVTADTILYCTGYSYSFPFLD--------  296 (454)
Q Consensus       240 ~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~~---~v~~~-dG--~~i~~D~vI~atG~~~~~~~l~--------  296 (454)
                      +.+.+.+.        +. ..++++.+..|+++..++   .+.+. +|  +++++|.||+|+|++|+.+++.        
T Consensus       206 ~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~  285 (464)
T 2a8x_A          206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVAL  285 (464)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCB
T ss_pred             cccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCcc
Confidence            76544322        22 235788888999997543   34554 67  5789999999999999988742        


Q ss_pred             -CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575          297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g  352 (454)
                       ++|.|.+|++.+          ++.|++|++||+...+ ..+.|..||+.+|.++.|
T Consensus       286 ~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g  333 (464)
T 2a8x_A          286 TDRKAIGVDDYMR----------TNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG  333 (464)
T ss_dssp             CTTSSBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEeECcCCc----------cCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence             346677776554          4579999999998654 357899999999999998

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=4.2e-33  Score=282.25  Aligned_cols=292  Identities=17%  Similarity=0.187  Sum_probs=199.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccccccceecCCccccccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ..+||+|||||+||++||..|++.|++|+|||++ .+||+|.+.+|.|++.+ .......       ....+..+.++. 
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~-------~~~~~~~~g~~~-   89 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSE-------FMHDHADYGFPS-   89 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHH-------HHTTTTTTTSCC-
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHH-------HHHHHHhcCccC-
Confidence            4689999999999999999999999999999975 79999999888766411 1110000       011111222221 


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQR-----------FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                          ........++.++.+.+.+.           .++.  +..+ ++..++   ..         .++|.. ++.    
T Consensus        90 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~---~~---------~~~v~~-~g~----  145 (478)
T 3dk9_A           90 ----CEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIE--IIRG-HAAFTS---DP---------KPTIEV-SGK----  145 (478)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEECS---CS---------SCEEEE-TTE----
T ss_pred             ----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEee---CC---------eEEEEE-CCE----
Confidence                11223445555554444432           3333  2222 222221   11         456663 222    


Q ss_pred             EEEEeCEEEEccCCCCCCCCC---CCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          159 VEEVFDAVVVATGHYSYPRLP---SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p---~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                       ++.||+||||||  +.|..|   ++||.+.    ..++..+..... .+++|+|||+|.+|+|+|..+++.|.+|+++.
T Consensus       146 -~~~~d~lviAtG--~~p~~p~~~~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~  217 (478)
T 3dk9_A          146 -KYTAPHILIATG--GMPSTPHESQIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMI  217 (478)
T ss_dssp             -EEECSCEEECCC--EEECCCCTTTSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             -EEEeeEEEEccC--CCCCCCCcCCCCCCce----eEchHHhhchhh-cCccEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence             689999999999  899999   8999762    234444333322 36899999999999999999999999999999


Q ss_pred             ccCCcCccchh--------hhcc-CCCeEEcCceeEEecC--C---cEEEeC---C----CEEeeceEEEccCcccCCcC
Q 044575          236 KSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G---RVTFVD---G----CWVTADTILYCTGYSYSFPF  294 (454)
Q Consensus       236 r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~---~v~~~d---G----~~i~~D~vI~atG~~~~~~~  294 (454)
                      +.+++.+.+.+        .+.+ .++++.+..|+++..+  +   .+.+.+   |    +++++|.||+|+|++|+.++
T Consensus       218 ~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~  297 (478)
T 3dk9_A          218 RHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD  297 (478)
T ss_dssp             SSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTT
T ss_pred             eCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCC
Confidence            98887544332        2332 3477778888888643  2   255655   2    56889999999999999885


Q ss_pred             CC---------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575          295 LD---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       295 l~---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~  353 (454)
                      |.         ++|.+.+|++..          ++.|++|++||+...+ ..+.|..||+.+|+++.|.
T Consensus       298 l~l~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  356 (478)
T 3dk9_A          298 LSLNKLGIQTDDKGHIIVDEFQN----------TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY  356 (478)
T ss_dssp             SCGGGGTCCBCTTCCBCCCTTCB----------CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCchhcCCeeCCCCCEeeCCCcc----------cCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence            42         345566665443          4579999999998544 4589999999999999886

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=100.00  E-value=4.4e-32  Score=275.41  Aligned_cols=215  Identities=18%  Similarity=0.240  Sum_probs=151.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--------------cEEEEeeCCCCCcccccCCCCCCCCccccccccc-eecCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--------------RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASL-RLTSP   75 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--------------~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~-~~~~~   75 (454)
                      +.+|||||||||+||++|..|.+.|.              ..+.+|+.+.++  |+.....+...+..+....+ ....|
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P  115 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDP  115 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCT
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCCCCccccccchhhhccccCC
Confidence            35899999999999999999987543              456777766554  54321111111111111111 11112


Q ss_pred             ccccccCC--------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE
Q 044575           76 REIMGYTD--------FPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV  147 (454)
Q Consensus        76 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~  147 (454)
                      ..-++|..        ++|..    ....||++.|+.+|+++++++|+..  ++|+++|++|++.+.+.. ..... .|+
T Consensus       116 ~s~~sf~~yl~~~~rl~~f~~----~~~~~p~r~E~~~Yl~~~A~~~~~~--vrf~~~V~~v~~~~~~~~-~~~~~-~~~  187 (501)
T 4b63_A          116 RSSFTFLNYLHQKGRLIHFTN----LSTFLPARLEFEDYMRWCAQQFSDV--VAYGEEVVEVIPGKSDPS-SSVVD-FFT  187 (501)
T ss_dssp             TCTTSHHHHHHHHTCHHHHHT----TCCSCCBHHHHHHHHHHHHHTTGGG--EEESEEEEEEEEECSSTT-SSCBC-EEE
T ss_pred             CCccchHHHHHHhCCccCCcc----ccCCCCCHHHHHHHHHHHHHHcCCc--eEcceEEEeecccccccc-ccccc-eEE
Confidence            21122111        12222    4567899999999999999988744  999999999998754310 00111 699


Q ss_pred             EEEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCC------CCCCCCCeEEEEcCCCCHHHHH
Q 044575          148 VKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRV------PEPFRNEVVVVVGNSLSGQDIS  221 (454)
Q Consensus       148 v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~------~~~~~~k~vvVVG~G~sg~e~A  221 (454)
                      |++.++.++...++.+++||+|||  ..|.+|   +...+.+.++|+..|..      ...++||+|+|||+|.||+|++
T Consensus       188 V~~~~~~~g~~~~~~ar~vVlatG--~~P~iP---~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~  262 (501)
T 4b63_A          188 VRSRNVETGEISARRTRKVVIAIG--GTAKMP---SGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIF  262 (501)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECCC--CEECCC---TTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHH
T ss_pred             EEEecCCCceEEEEEeCEEEECcC--CCCCCC---CCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHH
Confidence            999998777778899999999999  677766   44457789999998853      5678999999999999999999


Q ss_pred             HHHhhh--cCeEEEecccCCc
Q 044575          222 MELVEV--AKEVHLSAKSLNI  240 (454)
Q Consensus       222 ~~l~~~--~~~V~l~~r~~~~  240 (454)
                      .+|++.  +.+|+++.|++.+
T Consensus       263 ~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          263 HDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             HHHHHHSTTCEEEEECSSSSC
T ss_pred             HHHHhcCCCceEEEEeCCCcc
Confidence            999875  7899999998765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.4e-32  Score=279.83  Aligned_cols=302  Identities=17%  Similarity=0.182  Sum_probs=204.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      +||+|||||++|+++|..|++.   |++|+|||+++ +||+|.+.+|.|++.+..  ..+..+.        .+..+.++
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~--------~~~~~g~~   73 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELR--------RAPHLGFH   73 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHT--------TTTTTTBC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHH--------HHHhCCCc
Confidence            7899999999999999999999   99999999987 999999888766541100  0011000        11111111


Q ss_pred             CCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           88 LKKGRDVRRFPGHKELW-----------LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-----------~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                      ...  . ........+.           .++.++.++.++.  +..++ +..++..+...     .. .+.|...++   
T Consensus        74 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~-----~~-~~~V~~~~g---  138 (499)
T 1xdi_A           74 IDF--D-DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAGR-GELIDSTPGLA-----RH-RIKATAADG---  138 (499)
T ss_dssp             ---------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEECCSSSCCS-----SE-EEEEECTTS---
T ss_pred             ccc--C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEecCcccCC-----CC-EEEEEeCCC---
Confidence            000  0 0011223333           3345666677776  66664 55554310000     00 445544322   


Q ss_pred             eEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          157 KVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                      ....+.||+||+|||  +.|..|++||.+..  .++++.+...... .+++++|||+|.+|+|+|..+.+.+.+|+++++
T Consensus       139 ~~~~~~~d~lviATG--s~p~~p~i~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~  213 (499)
T 1xdi_A          139 STSEHEADVVLVATG--ASPRILPSAQPDGE--RILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVAS  213 (499)
T ss_dssp             CEEEEEESEEEECCC--EEECCCGGGCCCSS--SEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cEEEEEeCEEEEcCC--CCCCCCCCCCCCcC--cEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence            223689999999999  89999988887643  2445544433322 458999999999999999999999999999999


Q ss_pred             cCCcCccchh--------hhcc-CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCC--CC-----
Q 044575          237 SLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFL--DT-----  297 (454)
Q Consensus       237 ~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l--~~-----  297 (454)
                      .+.+.+.+.+        .+.+ .++++.++.|+++..++   .|.+.+|+++++|.||+|+|++|+.++|  ..     
T Consensus       214 ~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~  293 (499)
T 1xdi_A          214 QDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL  293 (499)
T ss_dssp             SSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCC
T ss_pred             CCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceE
Confidence            9887554332        2222 35788888999997543   3455678899999999999999999873  32     


Q ss_pred             --CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575          298 --KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       298 --~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~  353 (454)
                        +|.|.||+..+          ++.|++|++||+...+. .+.|..||+.+|.++.|+
T Consensus       294 ~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  342 (499)
T 1xdi_A          294 GRGNYLTVDRVSR----------TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE  342 (499)
T ss_dssp             BTTTBCCCCSSSB----------CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence              24455554433          45799999999987543 578999999999999987

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.1e-32  Score=279.60  Aligned_cols=296  Identities=18%  Similarity=0.206  Sum_probs=199.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHH-cCCcEEEEe--------eCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLE--------QNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMG   80 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie--------~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~   80 (454)
                      .+||+|||||++|++||..|++ .|++|+|||        +.+.+||+|.+.+|.|++.+ ... .+..++ +.+     
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~~-----   76 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR-ESA-----   76 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHH-HGG-----
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHH-HHH-----
Confidence            4799999999999999999999 999999999        35789999999888776511 111 111111 000     


Q ss_pred             cCCCCCCCCCCCCCC-CCCCHHHHHHHHHH-----------HHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEE
Q 044575           81 YTDFPFVLKKGRDVR-RFPGHKELWLYLKD-----------FCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV  147 (454)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~yl~~-----------~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~  147 (454)
                        .+.+..    ... ......++.++.++           ..++. ++.  +..+ ++..++.              .+
T Consensus        77 --~~g~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g-~~~~i~~--------------~~  133 (490)
T 1fec_A           77 --GFGWEL----DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT--FHQG-FGALQDN--------------HT  133 (490)
T ss_dssp             --GGTEEC----CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EEES-EEEEEET--------------TE
T ss_pred             --hcCccc----CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE--EEEe-EEEEeeC--------------CE
Confidence              111100    000 00122344333322           22333 444  4444 3555542              13


Q ss_pred             EEEeec--CCCe-EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHH
Q 044575          148 VKSKEK--KADK-VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMEL  224 (454)
Q Consensus       148 v~~~~~--~~~~-~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l  224 (454)
                      +.+...  .++. ..++.||+||||||  +.|..|++||.+.    .+++..+.... ..+++++|||+|.+|+|+|..+
T Consensus       134 v~v~~~~~~~g~~~~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l  206 (490)
T 1fec_A          134 VLVRESADPNSAVLETLDTEYILLATG--SWPQHLGIEGDDL----CITSNEAFYLD-EAPKRALCVGGGYISIEFAGIF  206 (490)
T ss_dssp             EEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCSBTGGG----CBCHHHHTTCS-SCCSEEEEECSSHHHHHHHHHH
T ss_pred             EEEEeeccCCCCceEEEEcCEEEEeCC--CCCCCCCCCCccc----eecHHHHhhhh-hcCCeEEEECCCHHHHHHHHHH
Confidence            444310  0111 13789999999999  8999999998742    23333333222 2468999999999999999999


Q ss_pred             hhh---cCeEEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCc
Q 044575          225 VEV---AKEVHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       225 ~~~---~~~V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~  288 (454)
                      ++.   |.+|+++++.+.+.+.+++        .+.+ .++++.+..|+++..+  +  .|.+.+|+++++|.||+|+|+
T Consensus       207 ~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          207 NAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             HHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             HhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence            999   9999999999887554332        2222 3478889999999754  2  467788989999999999999


Q ss_pred             ccCCcCC--C-------CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCC
Q 044575          289 SYSFPFL--D-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       289 ~~~~~~l--~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~  353 (454)
                      +|+.++|  .       ++|.|.+|+..+          ++.|++|++||+... ...+.|..||+.+|.++.|.
T Consensus       287 ~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  351 (490)
T 1fec_A          287 VPRSQTLQLEKAGVEVAKNGAIKVDAYSK----------TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN  351 (490)
T ss_dssp             EESCTTSCGGGGTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             CcCccccCchhcCccCCCCCCEEECCCCc----------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            9998754  2       245555555443          457999999999864 35689999999999999885

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.1e-32  Score=274.11  Aligned_cols=279  Identities=19%  Similarity=0.215  Sum_probs=196.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCc--EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHR--VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~--v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      .+.++|+|||||+||++||.+|++.|++  |+|||+++.++....            +        .++....  +.   
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~------------~--------l~~~~~~--~~---   61 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP------------P--------LSKEYLA--RE---   61 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG------------G--------GGTTTTT--TS---
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc------------c--------CCHHHHc--CC---
Confidence            3458999999999999999999999986  999999875432110            0        0000000  00   


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                                ....++..+..++..+.++.  ++++++|..++..            .++|.+.++.     .+.||+||
T Consensus        62 ----------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~------------~~~v~~~~g~-----~~~~d~lv  112 (415)
T 3lxd_A           62 ----------KTFERICIRPAQFWEDKAVE--MKLGAEVVSLDPA------------AHTVKLGDGS-----AIEYGKLI  112 (415)
T ss_dssp             ----------SCSGGGBSSCHHHHHHTTEE--EEETCCEEEEETT------------TTEEEETTSC-----EEEEEEEE
T ss_pred             ----------CCHHHhccCCHHHHHHCCcE--EEeCCEEEEEECC------------CCEEEECCCC-----EEEeeEEE
Confidence                      00011111223445566776  8888899999765            5567776654     78999999


Q ss_pred             EccCCCCCCCCCCCCCcCCccceeEEeec-CC--CCCCCC-CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc
Q 044575          168 VATGHYSYPRLPSIKGMDKWKRKQMHSHI-YR--VPEPFR-NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG  243 (454)
Q Consensus       168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~-~~--~~~~~~-~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~  243 (454)
                      +|||  +.|+.|++||.+......+++.. ..  ...... +++|+|||+|.+|+|+|..+.+.+.+|+++++.+.+.+.
T Consensus       113 lAtG--~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~  190 (415)
T 3lxd_A          113 WATG--GDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR  190 (415)
T ss_dssp             ECCC--EECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             EccC--CccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh
Confidence            9999  89999999987632211111110 00  000112 799999999999999999999999999999999876432


Q ss_pred             -----c----hhhhcc-CCCeEEcCceeEEecCC----cEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeC
Q 044575          244 -----L----SKVISK-HNNLHLHPQIDCLREDG----RVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVD  304 (454)
Q Consensus       244 -----~----~~~l~~-~~~i~~~~~v~~v~~~~----~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~  304 (454)
                           +    .+.+.+ .++++.+..|+++..++    .|.+.||+++++|.||+|+|++|+.+++..     .+.+.+|
T Consensus       191 ~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~vd  270 (415)
T 3lxd_A          191 VAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVD  270 (415)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCSSSEECC
T ss_pred             hcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcCCCEEEC
Confidence                 2    222333 35788899999997542    478889999999999999999999877532     1236666


Q ss_pred             CCCcccccCcccCCCCCCCceEecccccccc------------hhHHHHHHHHHHHHHcCCC
Q 044575          305 DDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG------------FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       305 ~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~------------~~~a~~qa~~~a~~i~g~~  354 (454)
                      +...          ++.|++|++|++...+.            ++.|..||+.+|++|.|+.
T Consensus       271 ~~~~----------t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  322 (415)
T 3lxd_A          271 EFCR----------TSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP  322 (415)
T ss_dssp             TTCB----------CSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCC----------cCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence            6544          45699999999885432            4789999999999999974

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=9.9e-33  Score=286.53  Aligned_cols=281  Identities=18%  Similarity=0.275  Sum_probs=203.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..++|+|||||+||++||..|++.  |.+|+|||+++.+|..    ++         ..       |          +..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~----~~---------~l-------p----------~~~   84 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA----NC---------GL-------P----------YYI   84 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GG---------GH-------H----------HHH
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----CC---------CC-------c----------hhh
Confidence            357999999999999999999998  8999999998865411    00         00       0          000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                          ..........+..++..+.+++++.  ++++++|++++...            ..+.+.+..++...++.||+|||
T Consensus        85 ----~g~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~------------~~v~v~~~~~g~~~~~~~d~lvi  146 (588)
T 3ics_A           85 ----GGVITERQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEE------------KTITIKNVTTNETYNEAYDVLIL  146 (588)
T ss_dssp             ----TTSSCCGGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTT------------TEEEEEETTTCCEEEEECSEEEE
T ss_pred             ----cCcCCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC------------CEEEEeecCCCCEEEEeCCEEEE
Confidence                0000111223456677888888988  88999999998653            23444432223345789999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPE-------PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~-------~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      |||  +.|..|++||.+...+ +++........       ...+++|+|||+|.+|+|+|..+++.|.+|+++.+.+.+.
T Consensus       147 AtG--~~p~~p~i~G~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  223 (588)
T 3ics_A          147 SPG--AKPIVPSIPGIEEAKA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM  223 (588)
T ss_dssp             CCC--EEECCCCCTTTTTCTT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCC--CCCCCCCCCCcccCCC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            999  8999999999843332 23322211110       1356899999999999999999999999999999988875


Q ss_pred             ccchh--------hhcc-CCCeEEcCceeEEecC-CcEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeC
Q 044575          242 EGLSK--------VISK-HNNLHLHPQIDCLRED-GRVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVD  304 (454)
Q Consensus       242 ~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~  304 (454)
                      +.+..        .+.+ .++++.+..|+++..+ +.|++.+|+++++|.||+|||++|++++++       ++|.+.+|
T Consensus       224 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd  303 (588)
T 3ics_A          224 PPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVN  303 (588)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCC
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEEC
Confidence            54332        2222 3578888999999753 368899999999999999999999987653       34556666


Q ss_pred             CCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcC
Q 044575          305 DDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       305 ~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g  352 (454)
                      +...          ++.|++|++||+...           ...+.|..||+.+|+++.|
T Consensus       304 ~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  352 (588)
T 3ics_A          304 EKFQ----------TSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG  352 (588)
T ss_dssp             TTSB----------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred             Cccc----------cCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence            6544          457999999999731           2346899999999999998

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=5.8e-33  Score=279.48  Aligned_cols=292  Identities=18%  Similarity=0.152  Sum_probs=198.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc--ccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH--SSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+|||||+||+++|..|++.|.+|+|||+++.+||.|.+.+|.|++.+.  ...+..+..  +       .+.++.  
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~--~-------~~g~~~--   70 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK--G-------LLGAKV--   70 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH--C-------CTTEEE--
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh--h-------cCCccc--
Confidence            689999999999999999999999999999998999999988876654110  011111111  0       011100  


Q ss_pred             CCCCCCCCCHHHHHH-----------HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           91 GRDVRRFPGHKELWL-----------YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                        .. ......++..           .+..++++.++.  +..++.+ .+   +..         .++|.+ ++.     
T Consensus        71 --~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i---~~~---------~~~v~~-~g~-----  126 (455)
T 2yqu_A           71 --KG-VELDLPALMAHKDKVVQANTQGVEFLFKKNGIA--RHQGTAR-FL---SER---------KVLVEE-TGE-----  126 (455)
T ss_dssp             --CC-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEE-ES---SSS---------EEEETT-TCC-----
T ss_pred             --CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEE-Ee---cCC---------eEEEee-CCE-----
Confidence              00 0012223322           234455556665  5555533 22   211         455543 322     


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++.||+||+|||  +.|..|+++|.+..  .++++.+...... .+++|+|||+|.+|+|+|..|++.+.+|+++++.+.
T Consensus       127 ~~~~d~lviAtG--~~p~~~~~~g~~~~--~v~~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~  201 (455)
T 2yqu_A          127 ELEARYILIATG--SAPLIPPWAQVDYE--RVVTSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR  201 (455)
T ss_dssp             EEEEEEEEECCC--EEECCCTTBCCCSS--SEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEecEEEECCC--CCCCCCCCCCCCcC--cEechHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            789999999999  88999988886431  2455554433322 468999999999999999999999999999999888


Q ss_pred             cCccchh--------hhc-cCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCC--CC-------C
Q 044575          240 ISEGLSK--------VIS-KHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFL--DT-------K  298 (454)
Q Consensus       240 ~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l--~~-------~  298 (454)
                      +.+.+..        .+. ..++++.+..|+++..++   .+.+.+|+++++|.||+|||++|+.+++  +.       +
T Consensus       202 ~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~  281 (455)
T 2yqu_A          202 ILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDER  281 (455)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTT
T ss_pred             cccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCC
Confidence            7543322        222 235788888999987433   3455588899999999999999998764  21       2


Q ss_pred             CceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575          299 GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       299 g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~  354 (454)
                      |.+.+|+...          +..|++|++|++...+. .+.|..||+.+|.++.|+.
T Consensus       282 g~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  328 (455)
T 2yqu_A          282 GRIPVDEHLR----------TRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGF  328 (455)
T ss_dssp             SCCCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             CcEeECCCcc----------cCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCCC
Confidence            3344444322          34699999999986543 4789999999999998853

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.7e-32  Score=276.04  Aligned_cols=297  Identities=15%  Similarity=0.167  Sum_probs=198.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-c-ccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-H-SSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||+||++||..|++.|.+|+|||+ +.+||+|.+.+|.|++.+ . ...+..+.. ...    +..+.++. 
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~-~~~----~~~~g~~~-   77 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASR-FTE----PSPLGISV-   77 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-TTS----CCTTCCCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhh-ccc----ccccCccc-
Confidence            48999999999999999999999999999999 789999998888765411 1 111222210 000    00011110 


Q ss_pred             CCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                         . .......++..+           +..+.++.++.  +..++.+. ++              .++|++.+      
T Consensus        78 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~-~~--------------~~~v~v~~------  130 (458)
T 1lvl_A           78 ---A-SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK--VVHGWAKV-LD--------------GKQVEVDG------  130 (458)
T ss_dssp             ---C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECSCEEE-EE--------------TTEEEETT------
T ss_pred             ---C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEE-cc--------------CCEEEEee------
Confidence               0 011233444333           33455566766  66665443 32              33455542      


Q ss_pred             EEEEeCEEEEccCCCCCCCCCC-CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          159 VEEVFDAVVVATGHYSYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .++.||+||||||  +.|+.|+ +| .+   +.++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++++.
T Consensus       131 ~~~~~d~lviATG--s~p~~~~~~~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  203 (458)
T 1lvl_A          131 QRIQCEHLLLATG--SSSVELPMLP-LG---GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR  203 (458)
T ss_dssp             EEEECSEEEECCC--EEECCBTTBC-CB---TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             EEEEeCEEEEeCC--CCCCCCCCCC-cc---CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            2789999999999  7888775 44 22   23556555543332 4689999999999999999999999999999999


Q ss_pred             CCcCccchhh--------hc-cCCCeEEcCceeEEecCCcEEEe--CC--CEEeeceEEEccCcccCCcCC--CCCCcee
Q 044575          238 LNISEGLSKV--------IS-KHNNLHLHPQIDCLREDGRVTFV--DG--CWVTADTILYCTGYSYSFPFL--DTKGIVV  302 (454)
Q Consensus       238 ~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~~~v~~~--dG--~~i~~D~vI~atG~~~~~~~l--~~~g~i~  302 (454)
                      +.+.+.+.+.        +. ..++++.+..|+++.. +.+.+.  +|  +++++|.||+|||++|+.+++  +..| +.
T Consensus       204 ~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g-~~  281 (458)
T 1lvl_A          204 ERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN-GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLD-LK  281 (458)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET-TEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSC-CC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe-CCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcC-Cc
Confidence            8875543322        22 2357888889999976 435555  56  578999999999999998874  3222 23


Q ss_pred             eCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          303 VDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       303 v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +++. ......+ +. ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus       282 ~~~~-~i~vd~~-~~-t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  331 (458)
T 1lvl_A          282 MNGA-AIAIDER-CQ-TSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKA  331 (458)
T ss_dssp             EETT-EECCCTT-CB-CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCC-EEeECCC-Cc-CCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence            3322 1111111 12 4569999999998654 35789999999999999853

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.1e-32  Score=279.06  Aligned_cols=299  Identities=16%  Similarity=0.136  Sum_probs=199.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC------CCCcccccCCCCCCCCccc--cccccceecCCccccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH------DVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYT   82 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~------~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   82 (454)
                      +++||+|||||+||++||..|++.|++|+|||+++      .+||+|.+.+|.|++.+..  ..+.......       .
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~-------~   74 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESF-------K   74 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTS-------G
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            35899999999999999999999999999999986      4889998888876641110  0111111000       0


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLYL-----------KDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      .+.+..     .........+..+.           ..+.++.++.  +..+. +..+   +..         .+.|...
T Consensus        75 ~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~~---~~~---------~~~v~~~  134 (476)
T 3lad_A           75 LHGIST-----GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVT--LFEGH-GKLL---AGK---------KVEVTAA  134 (476)
T ss_dssp             GGTEEC-----SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESE-EEEC---STT---------CEEEECT
T ss_pred             hcCccc-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEe---cCC---------EEEEEcC
Confidence            011100     00112223333332           2333444554  44343 2222   211         5666543


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeE
Q 044575          152 EKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV  231 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V  231 (454)
                      +   +...++.||+||||||  +.|..|+.++.+.  ..++++....... ..+++|+|||+|.+|+|+|..+++.+.+|
T Consensus       135 ~---g~~~~~~~d~lvlAtG--~~p~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~V  206 (476)
T 3lad_A          135 D---GSSQVLDTENVILASG--SKPVEIPPAPVDQ--DVIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWARLGAEV  206 (476)
T ss_dssp             T---SCEEEECCSCEEECCC--EEECCCTTSCCCS--SSEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             C---CceEEEEcCEEEEcCC--CCCCCCCCCCCCc--ccEEechhhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence            3   2234789999999999  7888765554322  2355555443332 35689999999999999999999999999


Q ss_pred             EEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecCC---cEEEeCC---CEEeeceEEEccCcccCCcCC-
Q 044575          232 HLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG---RVTFVDG---CWVTADTILYCTGYSYSFPFL-  295 (454)
Q Consensus       232 ~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~dG---~~i~~D~vI~atG~~~~~~~l-  295 (454)
                      +++++.+.+.+.+.+        .+.+ .++++.+..|+++..++   .+.+.++   +++++|.||+|||++|+.+++ 
T Consensus       207 tlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~  286 (476)
T 3lad_A          207 TVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLL  286 (476)
T ss_dssp             EEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCC
T ss_pred             EEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCC
Confidence            999999887554332        2222 34788889999987443   4667765   578899999999999998764 


Q ss_pred             -C-------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          296 -D-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       296 -~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                       .       ++|.+.+|+..+          ++.|++|++||+...+ ..+.|..||+.+|+++.|+.
T Consensus       287 ~~~~g~~~~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  344 (476)
T 3lad_A          287 AADSGVTLDERGFIYVDDYCA----------TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK  344 (476)
T ss_dssp             SSCCSCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccCccccCCCCEeeCCCcc----------cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence             2       234455554433          4579999999998544 45899999999999998864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.98  E-value=1.7e-32  Score=278.06  Aligned_cols=290  Identities=19%  Similarity=0.170  Sum_probs=198.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||++|++||..|++.|++|+|||+ +.+||.|.+.+|.|++.+ ... .+..+        ..+..+.+.. 
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~--------~~~~~~g~~~-   95 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEF--------SKSIGFGWKY-   95 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHH--------HHHGGGTBCC-
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHH--------HHHHhCCccc-
Confidence            58999999999999999999999999999999 789999998888766411 100 00000        0111111111 


Q ss_pred             CCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe-ecCCCe
Q 044575           90 KGRDVRRFPGHKE-----------LWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK-EKKADK  157 (454)
Q Consensus        90 ~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~-~~~~~~  157 (454)
                         ..+ ......           +..++....++.++.  +..+ .+..++              .+++.+. ++.   
T Consensus        96 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~i~--------------~~~v~v~~~~~---  151 (484)
T 3o0h_A           96 ---ADP-IFNWEKLVAAKNKEISRLEGLYREGLQNSNVH--IYES-RAVFVD--------------EHTLELSVTGE---  151 (484)
T ss_dssp             ---CCC-EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE--------------TTEEEETTTCC---
T ss_pred             ---CCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee--------------CCEEEEecCCe---
Confidence               000 112222           233344444555654  3333 444443              2345553 332   


Q ss_pred             EEEEEeCEEEEccCCCCCCC-CCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          158 VVEEVFDAVVVATGHYSYPR-LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~-~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                        .+.||+||||||  +.|. .|.+||.+.    ..++..+.... ..+++++|||+|.+|+|+|..+++.+.+|+++.+
T Consensus       152 --~~~~d~lviAtG--~~p~~~p~i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~  222 (484)
T 3o0h_A          152 --RISAEKILIATG--AKIVSNSAIKGSDL----CLTSNEIFDLE-KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHR  222 (484)
T ss_dssp             --EEEEEEEEECCC--EEECCC--CBTGGG----SBCTTTGGGCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             --EEEeCEEEEccC--CCcccCCCCCCccc----cccHHHHHhHH-hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence              789999999999  8898 899999763    22222222221 2468999999999999999999999999999999


Q ss_pred             cCCcCccchhh--------hc-cCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC--------
Q 044575          237 SLNISEGLSKV--------IS-KHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD--------  296 (454)
Q Consensus       237 ~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~--------  296 (454)
                      .+.+.+.+...        +. ..++++.+..|+++..++   .|.+.+|+++++|.||+|+|++|+.++|.        
T Consensus       223 ~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~  302 (484)
T 3o0h_A          223 GDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKV  302 (484)
T ss_dssp             SSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCB
T ss_pred             CCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceE
Confidence            98775443322        22 235788888999997543   47788999999999999999999988742        


Q ss_pred             -CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                       ++|.+.+|+...          ++.|++|++||+...+ ..+.|..||+.+|+++.|..
T Consensus       303 ~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  352 (484)
T 3o0h_A          303 NEFGAVVVDEKMT----------TNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENT  352 (484)
T ss_dssp             CTTSCBCCCTTSB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCEeECCCCC----------CCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence             346666665544          4579999999998744 45799999999999998863

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.98  E-value=9e-33  Score=278.62  Aligned_cols=290  Identities=17%  Similarity=0.169  Sum_probs=198.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+.+|.|++.+ ........       ...+..+.++.  
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~-------~~~~~~~g~~~--   74 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEH-------FEDAAGFGWTV--   74 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHH-------HHHGGGGTEEE--
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHH-------HHHHHhcCccc--
Confidence            48999999999999999999999999999999 789999998888766411 10000000       00111111110  


Q ss_pred             CCCCCCCCCHHHH-----------HHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe-ecCCCeE
Q 044575           91 GRDVRRFPGHKEL-----------WLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK-EKKADKV  158 (454)
Q Consensus        91 ~~~~~~~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~  158 (454)
                        ... .....++           ..++..+.++.++.  +..+ ++..++              .+++.+. ++     
T Consensus        75 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~--------------~~~v~~~~~~-----  129 (463)
T 4dna_A           75 --GES-RFDWAKLVAAKEQEIARLEGLYRKGLANAGAE--ILDT-RAELAG--------------PNTVKLLASG-----  129 (463)
T ss_dssp             --CCC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEES-CEEESS--------------SSEEEETTTT-----
T ss_pred             --CCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEee--------------CCEEEEecCC-----
Confidence              000 1122222           23344444455655  3333 333332              3345552 22     


Q ss_pred             EEEEeCEEEEccCCCCCCC-CCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          159 VEEVFDAVVVATGHYSYPR-LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~-~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      ..+.||+||+|||  +.|. .|++||.+.    ..++..+.... ..+++++|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus       130 ~~~~~d~lviAtG--~~p~~~p~i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~  202 (463)
T 4dna_A          130 KTVTAERIVIAVG--GHPSPHDALPGHEL----CITSNEAFDLP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRG  202 (463)
T ss_dssp             EEEEEEEEEECCC--EEECCCTTSTTGGG----CBCHHHHTTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eEEEeCEEEEecC--CCcccCCCCCCccc----cccHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence            2789999999999  8999 999999763    23333333222 24689999999999999999999999999999999


Q ss_pred             CCcCccchh--------hhcc-CCCeEEcCceeEEecC--C--cEE-EeCCCEEeeceEEEccCcccCCcCCC-------
Q 044575          238 LNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G--RVT-FVDGCWVTADTILYCTGYSYSFPFLD-------  296 (454)
Q Consensus       238 ~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~--~v~-~~dG~~i~~D~vI~atG~~~~~~~l~-------  296 (454)
                      +.+.+.+..        .+.+ .++++.++.|+++..+  +  .|. +.+|+ +++|.||+|+|++|+.++|.       
T Consensus       203 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~  281 (463)
T 4dna_A          203 KEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVR  281 (463)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCce
Confidence            877544332        2222 3578888899998754  2  366 67887 99999999999999988742       


Q ss_pred             --CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                        ++|.+.+|++..          ++.|++|++||+...+ ..+.|..||+++|+++.|..
T Consensus       282 ~~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  332 (463)
T 4dna_A          282 TNELGAIIVDAFSR----------TSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNN  332 (463)
T ss_dssp             BCTTSCBCCCTTCB----------CSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred             ECCCCCEeECcCCC----------CCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCCC
Confidence              334555555433          4579999999998754 35799999999999998864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.98  E-value=2.1e-32  Score=271.54  Aligned_cols=273  Identities=18%  Similarity=0.213  Sum_probs=194.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCc--EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHR--VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~--v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|+|||||+||++||..|++.|++  |+|||+++..+..-.            ++.....    ........+      
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~------------~l~~~~~----~g~~~~~~~------   60 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP------------SLSKAVL----DGSLERPPI------   60 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG------------GGGTHHH----HTSSSSCCB------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc------------cccHHHh----CCCCCHHHh------
Confidence            4899999999999999999999986  999999876532100            0000000    000000000      


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                            +.        ..++.++.++.  ++++++|+.++..            .++|++.++.     ++.||+|||||
T Consensus        61 ------~~--------~~~~~~~~~i~--~~~~~~v~~id~~------------~~~v~~~~g~-----~~~~d~lvlAt  107 (410)
T 3ef6_A           61 ------LA--------EADWYGEARID--MLTGPEVTALDVQ------------TRTISLDDGT-----TLSADAIVIAT  107 (410)
T ss_dssp             ------SS--------CTTHHHHTTCE--EEESCCEEEEETT------------TTEEEETTSC-----EEECSEEEECC
T ss_pred             ------cC--------CHHHHHHCCCE--EEeCCEEEEEECC------------CCEEEECCCC-----EEECCEEEEcc
Confidence                  00        11234456776  8889999999865            4567776654     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc--
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG--  243 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~--  243 (454)
                      |  +.|+.|++||.+...  +++.....+     .....+++|+|||+|.+|+|+|..+.+.+.+|+++++.+.+.+.  
T Consensus       108 G--~~p~~~~ipG~~~~~--v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~  183 (410)
T 3ef6_A          108 G--SRARTMALPGSQLPG--VVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVL  183 (410)
T ss_dssp             C--EEECCCCCTTTTSTT--EECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHH
T ss_pred             C--CcccCCCCCCccccc--eEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhc
Confidence            9  889999999975321  222111110     01235799999999999999999999999999999999886432  


Q ss_pred             ---chh----hhc-cCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCCC-----CceeeCCCC
Q 044575          244 ---LSK----VIS-KHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDTK-----GIVVVDDDR  307 (454)
Q Consensus       244 ---~~~----~l~-~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~-----g~i~v~~~~  307 (454)
                         +.+    .+. ..++++.+..|+++..++   .|++.||+++++|.||+|+|++|+.+++...     +.+.+|+..
T Consensus       184 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~vd~~~  263 (410)
T 3ef6_A          184 GRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDRGVIVDHCG  263 (410)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBSSSEECCTTS
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccCCeEEEccCe
Confidence               222    222 235788889999997654   4889999999999999999999998775421     235666554


Q ss_pred             cccccCcccCCCCCCCceEecccccccc----------hhHHHHHHHHHHHHHcCCC
Q 044575          308 VGPLYEHTFPPSLAPSLSFVGIPRKLIG----------FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       308 ~~~~~~~~~~~~~~p~l~~iG~~~~~~~----------~~~a~~qa~~~a~~i~g~~  354 (454)
                      .          ++.|++|++||+...+.          ++.|..||+.+|++|.|+.
T Consensus       264 ~----------t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  310 (410)
T 3ef6_A          264 A----------TLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN  310 (410)
T ss_dssp             B----------CSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             e----------ECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence            4          45799999999985432          5799999999999999974

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.98  E-value=1.1e-32  Score=269.23  Aligned_cols=267  Identities=21%  Similarity=0.329  Sum_probs=189.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      ..||+|||||+||++||..|++.| +|+|||+++..+    +..+         .....       +...  ..      
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~----~~~~---------~l~~~-------~~g~--~~------   58 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY----YSKP---------MLSHY-------IAGF--IP------   58 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC----CCST---------THHHH-------HTTS--SC------
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc----cccc---------hhHHH-------HhCC--CC------
Confidence            468999999999999999999999 999999987532    1100         00000       0000  00      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                              .+++..+..++.+++++.  ++++++|+.++..            .++|+ .++.     ++.||+||||||
T Consensus        59 --------~~~~~~~~~~~~~~~~v~--~~~g~~v~~id~~------------~~~V~-~~g~-----~~~~d~lViATG  110 (367)
T 1xhc_A           59 --------RNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG------------RKVVI-TEKG-----EVPYDTLVLATG  110 (367)
T ss_dssp             --------GGGGCSSCHHHHHHHTEE--EECSCCEEEEETT------------TTEEE-ESSC-----EEECSEEEECCC
T ss_pred             --------HHHhccCCHHHHHhCCcE--EEECCEEEEEECC------------CCEEE-ECCc-----EEECCEEEECCC
Confidence                    011111223445566776  7788889998865            55676 4443     789999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCCCCCCC-----CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPF-----RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK  246 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~-----~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~  246 (454)
                        +.|+.|++||.+    .+++...+.+...+     ++++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+ +.+
T Consensus       111 --s~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~  183 (367)
T 1xhc_A          111 --ARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDE  183 (367)
T ss_dssp             --EEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCH
T ss_pred             --CCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCH
Confidence              899999999832    23333222111111     358999999999999999999999999999999988755 332


Q ss_pred             --------hhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCC-----CceeeCCCCccccc
Q 044575          247 --------VISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTK-----GIVVVDDDRVGPLY  312 (454)
Q Consensus       247 --------~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~-----g~i~v~~~~~~~~~  312 (454)
                              .+.+ .++++.++.|+++..+ .|+++||+ +++|.||+|+|++|+.+++...     +.+.+|+..+    
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~~gi~Vd~~~~----  257 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEANEE-GVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFR----  257 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEECSS-EEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBSSSEECCTTSB----
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEee-EEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCCCCEEECCCcc----
Confidence                    2222 3477888899999744 58898988 9999999999999998764321     2355665443    


Q ss_pred             CcccCCCCCCCceEecccccc-----cchhHHHHHHHHHHHHHcCCC
Q 044575          313 EHTFPPSLAPSLSFVGIPRKL-----IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       313 ~~~~~~~~~p~l~~iG~~~~~-----~~~~~a~~qa~~~a~~i~g~~  354 (454)
                            ++.|++|++||+...     ..++.|..||+.+|+++.|+.
T Consensus       258 ------t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~  298 (367)
T 1xhc_A          258 ------TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEP  298 (367)
T ss_dssp             ------CSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred             ------cCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCCC
Confidence                  356999999999642     245799999999999999863

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.98  E-value=1.7e-32  Score=278.38  Aligned_cols=298  Identities=20%  Similarity=0.247  Sum_probs=198.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEee--------CCCCCcccccCCCCCCCCc-cccccccceecCCccccccC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ--------NHDVGGQWLYDPNTDQTEV-HSSVYASLRLTSPREIMGYT   82 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~--------~~~~GG~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+||+||||||||++||..|++.|.+|+|||+        ...+||+|.+.+|.|++.+ .+......       .....
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~-------~~~~~   78 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGM-------IRDAH   78 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHH-------HHHHH
Confidence            58999999999999999999999999999997        5679999999998876521 11100000       00011


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-----------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK  151 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~  151 (454)
                      .+.+..    .........++.++.+++.+++           ++.   .+..++..++   ..         .+.|...
T Consensus        79 ~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~i~g~~~~~~---~~---------~v~v~~~  139 (488)
T 3dgz_A           79 HYGWEV----AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK---YFNIKASFVD---EH---------TVRGVDK  139 (488)
T ss_dssp             HTTCCC----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECCEEEESS---SS---------EEEEECT
T ss_pred             hcCccc----CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEcc---CC---------eEEEEeC
Confidence            121111    1122345566666655544432           332   2233333322   11         4444432


Q ss_pred             ecCCCeEEEEEeCEEEEccCCCCCCCCCC-CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe
Q 044575          152 EKKADKVVEEVFDAVVVATGHYSYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE  230 (454)
Q Consensus       152 ~~~~~~~~~~~~d~vViAtG~~~~p~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~  230 (454)
                      +   +...++.||+||||||  +.|..|+ +||.+..   .+++..+.... ..+++++|||+|.+|+|+|..+++.|.+
T Consensus       140 ~---g~~~~~~~d~lViATG--s~p~~p~~i~G~~~~---~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~  210 (488)
T 3dgz_A          140 G---GKATLLSAEHIVIATG--GRPRYPTQVKGALEY---GITSDDIFWLK-ESPGKTLVVGASYVALECAGFLTGIGLD  210 (488)
T ss_dssp             T---SCEEEEEEEEEEECCC--EEECCCSSCBTHHHH---CBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             C---CceEEEECCEEEEcCC--CCCCCCCCCCCcccc---cCcHHHHHhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            2   3345789999999999  8999998 9997542   23343333222 2457899999999999999999999999


Q ss_pred             EEEecccCCc---Cccch----hhhcc-CCCeEEcCceeEEec--CC--cEEEeC---CC--EEeeceEEEccCcccCCc
Q 044575          231 VHLSAKSLNI---SEGLS----KVISK-HNNLHLHPQIDCLRE--DG--RVTFVD---GC--WVTADTILYCTGYSYSFP  293 (454)
Q Consensus       231 V~l~~r~~~~---~~~~~----~~l~~-~~~i~~~~~v~~v~~--~~--~v~~~d---G~--~i~~D~vI~atG~~~~~~  293 (454)
                      |+++.+...+   .+.+.    +.+.+ .++++.+..++++..  ++  .|.+.+   |+  ++++|.||+|+|++|+.+
T Consensus       211 Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~  290 (488)
T 3dgz_A          211 TTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR  290 (488)
T ss_dssp             EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred             eEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence            9999986432   12222    22332 357888888888864  22  356655   55  468999999999999988


Q ss_pred             CCC----------CCCceeeCCCCcccccCcccCCCCCCCceEeccccc-c-cchhHHHHHHHHHHHHHcCCC
Q 044575          294 FLD----------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK-L-IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       294 ~l~----------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~-~-~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      ++.          ++|.+.+|++.+          ++.|++|++||+.. . ...+.|..||+.+|.++.|..
T Consensus       291 ~l~l~~~g~~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  353 (488)
T 3dgz_A          291 TLNLEKAGISTNPKNQKIIVDAQEA----------TSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS  353 (488)
T ss_dssp             GGTGGGGTCCBCSSSCCBCCCTTSB----------CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCccccCcEecCCCCeEeECCCCc----------cCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCC
Confidence            742          245555555443          45799999999963 2 345789999999999998864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.98  E-value=1.7e-31  Score=269.53  Aligned_cols=319  Identities=16%  Similarity=0.211  Sum_probs=206.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC-----CcEEEEeeCCCCCcccccCCCCCCCCccccccccc-eecCCccccccCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG-----HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASL-RLTSPREIMGYTDFP   85 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g-----~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   85 (454)
                      .+||+|||||++|+++|..|++.|     .+|+|||+++.+|  |......+...+..+.+..+ ....|...+.|.++.
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence            469999999999999999999999     9999999999887  54321111110100000000 111122111111000


Q ss_pred             CCCCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcE--EEEEeecCCCeEE
Q 044575           86 FVLKK----GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKW--VVKSKEKKADKVV  159 (454)
Q Consensus        86 ~~~~~----~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  159 (454)
                      .....    ......|+++.++.+|+.+++++++..  ++++++|++|+..++..      . .|  +|++.++. +...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~------~-~~~~~V~~~~g~-g~~~  177 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAG------Q-VEALRVISRNAD-GEEL  177 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETT------E-EEEEEEEEEETT-SCEE
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCC------c-eEEEEEEEecCC-CceE
Confidence            00000    002345678899999999999998866  99999999998763210      0 45  66666653 4455


Q ss_pred             EEEeCEEEEccCCCCCCCCCCCCCcCCccc--eeEEeecCCC-CCCC-----CCCeEEEEcCCCCHHHHHHHHhhh--cC
Q 044575          160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKR--KQMHSHIYRV-PEPF-----RNEVVVVVGNSLSGQDISMELVEV--AK  229 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~--~~~~~~~~~~-~~~~-----~~k~vvVVG~G~sg~e~A~~l~~~--~~  229 (454)
                      ++.||+||+|||  +.|.+|.  +++.+.+  ..+|+..+.. ...+     ++++|+|||+|.+|+|+|..|++.  +.
T Consensus       178 ~~~~d~lVlAtG--~~p~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~  253 (463)
T 3s5w_A          178 VRTTRALVVSPG--GTPRIPQ--VFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSV  253 (463)
T ss_dssp             EEEESEEEECCC--CEECCCG--GGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTE
T ss_pred             EEEeCEEEECCC--CCCCCcc--hhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCC
Confidence            789999999999  7888775  2334444  6788877644 2333     589999999999999999999999  99


Q ss_pred             eEEEecccCCcCcc----------------------------chhhhc---------------------------cCCCe
Q 044575          230 EVHLSAKSLNISEG----------------------------LSKVIS---------------------------KHNNL  254 (454)
Q Consensus       230 ~V~l~~r~~~~~~~----------------------------~~~~l~---------------------------~~~~i  254 (454)
                      +|+++.|++.+.+.                            +.+...                           ....+
T Consensus       254 ~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  333 (463)
T 3s5w_A          254 QADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAF  333 (463)
T ss_dssp             EEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEE
T ss_pred             eEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence            99999999866321                            000000                           13456


Q ss_pred             EEcCceeEEecCC---cEEEe---CCCE--EeeceEEEccCcccC--CcCCCCC----CceeeCCCCcccccCcccCCCC
Q 044575          255 HLHPQIDCLREDG---RVTFV---DGCW--VTADTILYCTGYSYS--FPFLDTK----GIVVVDDDRVGPLYEHTFPPSL  320 (454)
Q Consensus       255 ~~~~~v~~v~~~~---~v~~~---dG~~--i~~D~vI~atG~~~~--~~~l~~~----g~i~v~~~~~~~~~~~~~~~~~  320 (454)
                      +.++.|+++..++   .|.+.   +|+.  +++|.||+|||++|+  .++|..-    |.+.+|++......     ...
T Consensus       334 ~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~g~i~v~~~~~~~~~-----~~~  408 (463)
T 3s5w_A          334 RCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTD-----ERC  408 (463)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGBC--CCCTTSBCCBC-----TTB
T ss_pred             EeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHhCCcccCcccccccC-----CCC
Confidence            7777888886433   36666   7775  889999999999999  6776532    56677765543211     112


Q ss_pred             CCCceEecccccc-----cch-hHHHHHHHHHHHHHc
Q 044575          321 APSLSFVGIPRKL-----IGF-PFFESQAKWIAQLLS  351 (454)
Q Consensus       321 ~p~l~~iG~~~~~-----~~~-~~a~~qa~~~a~~i~  351 (454)
                      .|+||++|++...     +.+ -.|..++++++.++.
T Consensus       409 ~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~  445 (463)
T 3s5w_A          409 KVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ  445 (463)
T ss_dssp             CSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence            4789999998742     112 366677777766553

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.97  E-value=5.5e-32  Score=274.34  Aligned_cols=298  Identities=19%  Similarity=0.203  Sum_probs=199.8

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC---C------CCCcccccCCCCCCCCccc-cccccceecCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN---H------DVGGQWLYDPNTDQTEVHS-SVYASLRLTSPREIM   79 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~---~------~~GG~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (454)
                      ...+||+||||||||++||..|++.|++|+|||+.   +      .+||+|.+.+|.|++.+.. ........       
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~-------   79 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVH-------   79 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHH-------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHH-------
Confidence            34689999999999999999999999999999942   1      3899999998877652111 00000000       


Q ss_pred             ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575           80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-----------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV  148 (454)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v  148 (454)
                      ....+.+..    .........++.++...+.+.+           ++.   .+...+..++..            .+.|
T Consensus        80 ~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~~~------------~v~v  140 (483)
T 3dgh_A           80 EAAAYGWNV----DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE---YINGLGSFVDSH------------TLLA  140 (483)
T ss_dssp             HHHHTTBCC----CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEETT------------EEEE
T ss_pred             HHHhcCccc----CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEeEEEEccCC------------EEEE
Confidence            001111111    1112345566666665554432           332   223333333211            4455


Q ss_pred             EEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhc
Q 044575          149 KSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVA  228 (454)
Q Consensus       149 ~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~  228 (454)
                      ...++   . .++.||+||||||  +.|..|++||.+..   .+++..+.... ..+++++|||+|.+|+|+|..+++.|
T Consensus       141 ~~~~g---~-~~~~~d~lviATG--s~p~~p~i~G~~~~---~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g  210 (483)
T 3dgh_A          141 KLKSG---E-RTITAQTFVIAVG--GRPRYPDIPGAVEY---GITSDDLFSLD-REPGKTLVVGAGYIGLECAGFLKGLG  210 (483)
T ss_dssp             ECTTC---C-EEEEEEEEEECCC--EEECCCSSTTHHHH---CBCHHHHTTCS-SCCCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             EeCCC---e-EEEEcCEEEEeCC--CCcCCCCCCCcccc---cCcHHHHhhhh-hcCCcEEEECCCHHHHHHHHHHHHcC
Confidence            44322   1 4689999999999  89999999997542   23333333222 24589999999999999999999999


Q ss_pred             CeEEEecccCCcCccch--------hhhcc-CCCeEEcCceeEEec--CC--cEEEeCCC-----EEeeceEEEccCccc
Q 044575          229 KEVHLSAKSLNISEGLS--------KVISK-HNNLHLHPQIDCLRE--DG--RVTFVDGC-----WVTADTILYCTGYSY  290 (454)
Q Consensus       229 ~~V~l~~r~~~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~--~~--~v~~~dG~-----~i~~D~vI~atG~~~  290 (454)
                      .+|+++.|. .+.+.++        +.+.+ .++++.+..|+++..  ++  .|++.+++     ++++|.||+|+|++|
T Consensus       211 ~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          211 YEPTVMVRS-IVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             CEEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             CEEEEEeCC-CCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence            999999985 3333222        22333 358888889999874  22  36777765     688999999999999


Q ss_pred             CCcCCC--C------CCceeeCCCCcccccCcccCCCCCCCceEeccccc--ccchhHHHHHHHHHHHHHcCCC
Q 044575          291 SFPFLD--T------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK--LIGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       291 ~~~~l~--~------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~--~~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +.+++.  .      .|.+.+|++..          ++.|++|++||+..  ....+.|..||+.+|+++.|..
T Consensus       290 ~~~~l~l~~~gl~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  353 (483)
T 3dgh_A          290 LVDDLNLPNAGVTVQKDKIPVDSQEA----------TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGS  353 (483)
T ss_dssp             CCGGGTGGGTTCCCBTTBBCCCTTCB----------CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CcCcCCchhcCccccCCEEEECcCCc----------cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence            988762  1      15555555443          45799999999973  2345899999999999998864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.97  E-value=7.9e-32  Score=267.01  Aligned_cols=275  Identities=16%  Similarity=0.173  Sum_probs=191.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|+|||||+||++||.+|++.|+  +|+|||+++..+..-.                    ..++..+... ..     
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~--------------------~l~~~~l~~~-~~-----   55 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP--------------------PLSKAYLKSG-GD-----   55 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG--------------------GGGTGGGGSC-CC-----
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc--------------------cCCHHHHCCC-CC-----
Confidence            689999999999999999999998  8999999875421100                    0000000000 00     


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .      .++..+..++..+.++.  +.. ++|++++..            .++|++.++.     ++.||+||+||
T Consensus        56 ---~------~~~~~~~~~~~~~~~i~--~~~-~~v~~id~~------------~~~v~~~~g~-----~~~~d~lvlAt  106 (404)
T 3fg2_P           56 ---P------NSLMFRPEKFFQDQAIE--LIS-DRMVSIDRE------------GRKLLLASGT-----AIEYGHLVLAT  106 (404)
T ss_dssp             ---T------TSSBSSCHHHHHHTTEE--EEC-CCEEEEETT------------TTEEEESSSC-----EEECSEEEECC
T ss_pred             ---H------HHccCCCHHHHHhCCCE--EEE-EEEEEEECC------------CCEEEECCCC-----EEECCEEEEee
Confidence               0      00001112344556665  666 889888765            4467776654     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCcccee---EEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc----
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQ---MHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG----  243 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~---~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~----  243 (454)
                      |  +.|+.|++||.+......   .+...........+++|+|||+|.+|+|+|..+.+.+.+|+++++.+.+.+.    
T Consensus       107 G--~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~  184 (404)
T 3fg2_P          107 G--ARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTP  184 (404)
T ss_dssp             C--EEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCH
T ss_pred             C--CCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCH
Confidence            9  889999999865311110   1111000011124789999999999999999999999999999998876432    


Q ss_pred             -ch----hhhcc-CCCeEEcCceeEEecCC----cEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeCCCCc
Q 044575          244 -LS----KVISK-HNNLHLHPQIDCLREDG----RVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDDRV  308 (454)
Q Consensus       244 -~~----~~l~~-~~~i~~~~~v~~v~~~~----~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~~~  308 (454)
                       +.    +.+.+ .++++.+..|+++..++    .|.+.||+++++|.||+|||++|+.+++..     .+.+.+|+...
T Consensus       185 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~Gi~vd~~~~  264 (404)
T 3fg2_P          185 EISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLL  264 (404)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSSEEECTTSB
T ss_pred             HHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCCEEECCCcc
Confidence             22    22222 35788888999987542    478899999999999999999999876532     12366666544


Q ss_pred             ccccCcccCCCCCCCceEecccccccc-----------hhHHHHHHHHHHHHHcCCC
Q 044575          309 GPLYEHTFPPSLAPSLSFVGIPRKLIG-----------FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       309 ~~~~~~~~~~~~~p~l~~iG~~~~~~~-----------~~~a~~qa~~~a~~i~g~~  354 (454)
                                ++.|++|++|++...+.           ++.|..||+.+|++|.|+.
T Consensus       265 ----------t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  311 (404)
T 3fg2_P          265 ----------TSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA  311 (404)
T ss_dssp             ----------CSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred             ----------cCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence                      45699999999986432           5789999999999999974

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.97  E-value=1.1e-31  Score=266.08  Aligned_cols=271  Identities=15%  Similarity=0.160  Sum_probs=192.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+|||||+||+++|..|++.|.  +|+|||+++.++..    .+.         .       ++.+.. ...  +.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~~---------~-------~~~~~~-~~~--~~   62 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD----RPP---------L-------SKDFMA-HGD--AE   62 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC----SGG---------G-------GTHHHH-HCC--GG
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCccc----CCC---------C-------CHHHhC-CCc--hh
Confidence            35899999999999999999999987  59999998754311    000         0       000000 000  00


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                          .  .         ++. .++++++.  ++++++|+.++..            .++|++.++.     ++.||+||+
T Consensus        63 ----~--~---------~~~-~~~~~~v~--~~~~~~v~~i~~~------------~~~v~~~~g~-----~~~~d~lvi  107 (408)
T 2gqw_A           63 ----K--I---------RLD-CKRAPEVE--WLLGVTAQSFDPQ------------AHTVALSDGR-----TLPYGTLVL  107 (408)
T ss_dssp             ----G--S---------BCC-CTTSCSCE--EEETCCEEEEETT------------TTEEEETTSC-----EEECSEEEE
T ss_pred             ----h--h---------hHH-HHHHCCCE--EEcCCEEEEEECC------------CCEEEECCCC-----EEECCEEEE
Confidence                0  0         000 12234555  7888889998764            5678776554     789999999


Q ss_pred             ccCCCCCCCCCCC-CCcCCccceeEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          169 ATGHYSYPRLPSI-KGMDKWKRKQMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       169 AtG~~~~p~~p~i-~G~~~~~~~~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      |||  +.|+.|++ ||.+  .+ +++.....+     .....+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.+
T Consensus       108 AtG--~~~~~~~i~~G~~--~~-v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  182 (408)
T 2gqw_A          108 ATG--AAPRALPTLQGAT--MP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS  182 (408)
T ss_dssp             CCC--EEECCCGGGTTCS--SC-EEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCC--CCCCCCCccCCCC--Cc-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc
Confidence            999  88999988 9875  22 322221111     1112479999999999999999999999999999999987654


Q ss_pred             c-ch--------hhhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeCCCC
Q 044575          243 G-LS--------KVISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDDR  307 (454)
Q Consensus       243 ~-~~--------~~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~~  307 (454)
                      . +.        +.+.+ .++++.+..|+++. ++.|++.||+++++|.||+|+|++|+.+++..     ++.+.+|++.
T Consensus       183 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~gi~Vd~~~  261 (408)
T 2gqw_A          183 RAAPATLADFVARYHAAQGVDLRFERSVTGSV-DGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYG  261 (408)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSSEECCTTC
T ss_pred             cccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCCEEECCCC
Confidence            2 22        22322 35788899999998 44788999999999999999999999877532     1226666654


Q ss_pred             cccccCcccCCCCCCCceEeccccccc-----------chhHHHHHHHHHHHHHcCCCC
Q 044575          308 VGPLYEHTFPPSLAPSLSFVGIPRKLI-----------GFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       308 ~~~~~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~a~~qa~~~a~~i~g~~~  355 (454)
                      +          ++.|++|++||+...+           .++.|..||+++|++|.|+..
T Consensus       262 ~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  310 (408)
T 2gqw_A          262 R----------TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA  310 (408)
T ss_dssp             B----------CSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred             c----------cCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC
Confidence            4          4569999999998643           346899999999999998643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.97  E-value=1.5e-31  Score=268.91  Aligned_cols=281  Identities=17%  Similarity=0.257  Sum_probs=193.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+|||||+||+++|..|++.  |.+|+|||+++.++...    |.      .+.|..-...         .+.     
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~----~~------~~~~~~g~~~---------~~~-----   56 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLS----CG------IALYLGKEIK---------NND-----   56 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCG----GG------HHHHHTTCBG---------GGC-----
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccc----cc------chhhhcCCcc---------cCC-----
Confidence            4899999999999999999998  99999999987654211    00      0000000000         000     


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                               .+++..++.+.++++++.  ++++++|..++...            .+|.+.+..++...++.||+|||||
T Consensus        57 ---------~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~------------~~v~v~~~~~g~~~~~~~d~lviAt  113 (452)
T 2cdu_A           57 ---------PRGLFYSSPEELSNLGAN--VQMRHQVTNVDPET------------KTIKVKDLITNEEKTEAYDKLIMTT  113 (452)
T ss_dssp             ---------GGGGBSCCHHHHHHTTCE--EEESEEEEEEEGGG------------TEEEEEETTTCCEEEEECSEEEECC
T ss_pred             ---------HHHhhhcCHHHHHHcCCE--EEeCCEEEEEEcCC------------CEEEEEecCCCceEEEECCEEEEcc
Confidence                     001111123344566776  77899999987653            2344443211223478999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-cc
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPE-----PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-GL  244 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~-----~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-~~  244 (454)
                      |  +.|..|++||.+..  .+++...+.+..     ...+++++|||+|.+|+|+|..+++.|.+|+++++.+.+.+ .+
T Consensus       114 G--s~p~~p~i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~  189 (452)
T 2cdu_A          114 G--SKPTVPPIPGIDSS--RVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYF  189 (452)
T ss_dssp             C--EEECCCCCTTTTST--TEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTS
T ss_pred             C--CCcCCCCCCCCCCC--CEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhh
Confidence            9  89999999997531  234433221111     12468999999999999999999999999999999887654 22


Q ss_pred             h--------hhhc-cCCCeEEcCceeEEec-CCcE--EEeCCCEEeeceEEEccCcccCCcCCCC------CCceeeCCC
Q 044575          245 S--------KVIS-KHNNLHLHPQIDCLRE-DGRV--TFVDGCWVTADTILYCTGYSYSFPFLDT------KGIVVVDDD  306 (454)
Q Consensus       245 ~--------~~l~-~~~~i~~~~~v~~v~~-~~~v--~~~dG~~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~~  306 (454)
                      .        +.+. ..++++.++.|+++.. ++.+  +..+|+++++|.||+|+|++|++++++.      +|.+.+|++
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~  269 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEY  269 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTT
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCC
Confidence            2        2222 2357889999999975 4433  3448889999999999999999887652      344555554


Q ss_pred             CcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          307 RVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+          ++.|++|++||+...           ..++.|..||+.+|+++.|..
T Consensus       270 ~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  318 (452)
T 2cdu_A          270 MH----------SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK  318 (452)
T ss_dssp             SB----------CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             cC----------cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence            33          357999999999863           245799999999999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.97  E-value=3.8e-31  Score=265.58  Aligned_cols=279  Identities=16%  Similarity=0.159  Sum_probs=191.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +||+|||||+||++||..|++.  |.+|+|||+++.+|..    +|.      .+.+.      ..      ..      
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~----~~~------~~~~~------~~------~~------   52 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL----SAG------MQLYL------EG------KV------   52 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC----GGG------HHHHH------TT------SS------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc----ccc------chhhh------cC------cc------
Confidence            3799999999999999999998  8999999998766421    110      00000      00      00      


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ...+++..++.+..+++++.  ++++++|..++...            .+|++.+..++...++.||+|||||
T Consensus        53 -------~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~------------~~v~~~~~~~g~~~~~~~d~lviAt  111 (447)
T 1nhp_A           53 -------KDVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE------------HQVTVKDLVSGEERVENYDKLIISP  111 (447)
T ss_dssp             -------CCGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT------------TEEEEEETTTCCEEEEECSEEEECC
T ss_pred             -------CCHHHhhcCCHHHHHHCCCE--EEECCEEEEEeCCC------------CEEEEEecCCCceEEEeCCEEEEcC
Confidence                   00011111223344556776  77899999987653            2355544111223358999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-  242 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-  242 (454)
                      |  +.|..|++||.+. . .+++...+.+.       ....+++++|||+|++|+|+|..+++.|.+|+++++.+.+.+ 
T Consensus       112 G--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          112 G--AVPFELDIPGKDL-D-NIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             C--EEECCCCSTTTTS-B-SEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             C--CCcCCCCCCCCCC-C-CeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            9  8899999999863 2 24443332111       112578999999999999999999999999999999887644 


Q ss_pred             cch--------hhhccC-CCeEEcCceeEEecCCcE--EEeCCCEEeeceEEEccCcccCCcCCCC------CCceeeCC
Q 044575          243 GLS--------KVISKH-NNLHLHPQIDCLREDGRV--TFVDGCWVTADTILYCTGYSYSFPFLDT------KGIVVVDD  305 (454)
Q Consensus       243 ~~~--------~~l~~~-~~i~~~~~v~~v~~~~~v--~~~dG~~i~~D~vI~atG~~~~~~~l~~------~g~i~v~~  305 (454)
                      .+.        +.+.+. .+++.+..|+++..++.+  +..+|+++++|.||+|+|++|+.+++..      +|.+.+|+
T Consensus       188 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~  267 (447)
T 1nhp_A          188 YLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE  267 (447)
T ss_dssp             TCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCT
T ss_pred             cCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECc
Confidence            122        223233 477888899999765422  3347788999999999999999887643      34455554


Q ss_pred             CCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      +..          ++.|++|++||+...           ...+.|..||+.+|.++.|..
T Consensus       268 ~~~----------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  317 (447)
T 1nhp_A          268 YMR----------TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  317 (447)
T ss_dssp             TCB----------CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             ccc----------CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCC
Confidence            433          356999999999853           235789999999999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.97  E-value=2.6e-31  Score=261.54  Aligned_cols=273  Identities=19%  Similarity=0.235  Sum_probs=194.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+|||||+||++||..|++.|  .+|+++|+++  |..|...           .+...             +    
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~-----------~l~~~-------------~----   52 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP-----------MLSTG-------------F----   52 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG-----------GGGGT-------------T----
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc-----------cccHH-------------H----
Confidence            3589999999999999999999998  5799999875  3332210           00000             0    


Q ss_pred             CCCCCCCCCCCHHHHH-HHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           89 KKGRDVRRFPGHKELW-LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                            .......++. .++..+++++++.  +.++++|..++..            .++|++.+ .     ++.||+||
T Consensus        53 ------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~------------~~~v~~~~-~-----~~~~d~lv  106 (384)
T 2v3a_A           53 ------SKNKDADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPG------------HQRIWIGE-E-----EVRYRDLV  106 (384)
T ss_dssp             ------TTTCCHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGG------------GTEEEETT-E-----EEECSEEE
T ss_pred             ------hCCCCHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECC------------CCEEEECC-c-----EEECCEEE
Confidence                  0011224443 3566777778877  7778889888754            45666642 1     68999999


Q ss_pred             EccCCCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          168 VATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      +|||  +.|..|++||.+.  ..++++..+.+.     ....+++++|||+|.+|+|+|..+++.+.+|+++++.+.+.+
T Consensus       107 iAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  182 (384)
T 2v3a_A          107 LAWG--AEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP  182 (384)
T ss_dssp             ECCC--EEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             EeCC--CCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh
Confidence            9999  8999999998753  123343332111     012369999999999999999999999999999999887643


Q ss_pred             cc---------hhhhcc-CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC------CCCceee
Q 044575          243 GL---------SKVISK-HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD------TKGIVVV  303 (454)
Q Consensus       243 ~~---------~~~l~~-~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~------~~g~i~v  303 (454)
                      .+         .+.+.+ ..+++.+..|+++..++   .|++.+|+++++|.||+|+|++|+.+++.      ++| +.+
T Consensus       183 ~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~v  261 (384)
T 2v3a_A          183 GLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVV  261 (384)
T ss_dssp             TTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEE
T ss_pred             cccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEE
Confidence            32         122322 35788888999986432   47788999999999999999999987643      234 666


Q ss_pred             CCCCcccccCcccCCCCCCCceEecccccc-----cchhHHHHHHHHHHHHHcCCC
Q 044575          304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |+..+          ++.|++|++||+...     ..+..|..||+.+|++|.|+.
T Consensus       262 d~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~  307 (384)
T 2v3a_A          262 DRSLR----------TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNP  307 (384)
T ss_dssp             CTTCB----------CSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCC----------CCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCC
Confidence            66544          457999999999742     124568899999999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.97  E-value=4.4e-31  Score=263.56  Aligned_cols=276  Identities=18%  Similarity=0.217  Sum_probs=191.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||++|+++|..|++.|.  +|+|||+++.++..    .+                ..++.+.... ...   
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~----------------~l~~~~~~~~-~~~---   59 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH----LP----------------PLSKAYLAGK-ATA---   59 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC----SG----------------GGGTTTTTTC-SCS---
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc----CC----------------CCcHHHhCCC-CCh---
Confidence            4799999999999999999999998  79999997653211    00                0000000000 000   


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                                 +++.....++.++.++.  ++++++|..++..            .++|++.++.     ++.||+||+|
T Consensus        60 -----------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~------------~~~v~~~~g~-----~~~~d~lviA  109 (431)
T 1q1r_A           60 -----------ESLYLRTPDAYAAQNIQ--LLGGTQVTAINRD------------RQQVILSDGR-----ALDYDRLVLA  109 (431)
T ss_dssp             -----------GGGBSSCHHHHHHTTEE--EECSCCEEEEETT------------TTEEEETTSC-----EEECSEEEEC
T ss_pred             -----------HHhcccCHHHHHhCCCE--EEeCCEEEEEECC------------CCEEEECCCC-----EEECCEEEEc
Confidence                       00000112334556766  7888999999864            3457776544     7899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccc-e-eEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          170 TGHYSYPRLPSIKGMDKWKR-K-QMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~-~-~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      ||  +.|+.|++||.+. .+ . +.+.....+     .....+++|+|||+|.+|+|+|..+++.|.+|+++++.+.+.+
T Consensus       110 tG--~~p~~~~i~G~~~-~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~  186 (431)
T 1q1r_A          110 TG--GRPRPLPVASGAV-GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE  186 (431)
T ss_dssp             CC--EEECCCGGGTTHH-HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CC--CCccCCCCCCccc-CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc
Confidence            99  8999999998752 22 0 221111100     0112479999999999999999999999999999999887643


Q ss_pred             c-c----h----hhhc-cCCCeEEcCceeEEec--C-C---cEEEeCCCEEeeceEEEccCcccCCcCCCCC-----Cce
Q 044575          243 G-L----S----KVIS-KHNNLHLHPQIDCLRE--D-G---RVTFVDGCWVTADTILYCTGYSYSFPFLDTK-----GIV  301 (454)
Q Consensus       243 ~-~----~----~~l~-~~~~i~~~~~v~~v~~--~-~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~-----g~i  301 (454)
                      . +    .    +.+. ..++++.+..|+++..  + +   .|.+.||+++++|.||+|+|++|+.+++...     +.+
T Consensus       187 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~gi  266 (431)
T 1q1r_A          187 RVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGI  266 (431)
T ss_dssp             TTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSSE
T ss_pred             chhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCCCE
Confidence            2 2    1    2222 2357888889999875  2 3   4678899999999999999999998775421     236


Q ss_pred             eeCCCCcccccCcccCCCCCCCceEeccccccc-----------chhHHHHHHHHHHHHHcCCC
Q 044575          302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-----------GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+|+..+          ++.|++|++||+...+           .++.|..||+.+|++|.|+.
T Consensus       267 ~Vd~~~~----------ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  320 (431)
T 1q1r_A          267 VINEHMQ----------TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV  320 (431)
T ss_dssp             ECCTTSB----------CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCcc----------cCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence            6666544          4569999999998643           24679999999999999874

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.97  E-value=7e-31  Score=265.81  Aligned_cols=280  Identities=20%  Similarity=0.230  Sum_probs=190.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+||+|||||+||+++|..|++.  |.+|+|||+++..++....          .+.+      .       .+.     
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~----------~~~~------~-------~~~-----   87 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG----------LPYV------I-------SGA-----   87 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG----------HHHH------H-------TTS-----
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC----------cchh------h-------cCC-----
Confidence            36999999999999999999997  8999999998765422110          0000      0       000     


Q ss_pred             CCCCCCCCCCHHHHH-HHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           90 KGRDVRRFPGHKELW-LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                             +...+++. .+...+.+++++.  ++++++|..|+...            .+|++.+..++...++.||+|||
T Consensus        88 -------~~~~~~l~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~------------~~v~v~~~~~g~~~~~~~d~lvi  146 (480)
T 3cgb_A           88 -------IASTEKLIARNVKTFRDKYGID--AKVRHEVTKVDTEK------------KIVYAEHTKTKDVFEFSYDRLLI  146 (480)
T ss_dssp             -------SSCGGGGBSSCHHHHHHTTCCE--EESSEEEEEEETTT------------TEEEEEETTTCCEEEEECSEEEE
T ss_pred             -------cCCHHHhhhcCHHHHHhhcCCE--EEeCCEEEEEECCC------------CEEEEEEcCCCceEEEEcCEEEE
Confidence                   00001111 1123344556776  78889999998653            23444431112234689999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      |||  +.|+.|++||.+..  .+++...+.+.       ....+++|+|||+|++|+|+|..+++.+.+|+++++.+.+.
T Consensus       147 AtG--~~p~~p~i~G~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  222 (480)
T 3cgb_A          147 ATG--VRPVMPEWEGRDLQ--GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG  222 (480)
T ss_dssp             CCC--EEECCCCCBTTTSB--TEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTT
T ss_pred             CCC--CcccCCCCCCccCC--CEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchh
Confidence            999  89999999997541  13332221111       01257999999999999999999999999999999988765


Q ss_pred             ccchh--------hhcc-CCCeEEcCceeEEecCCcE--EEeCCCEEeeceEEEccCcccCCcCCCC-------CCceee
Q 044575          242 EGLSK--------VISK-HNNLHLHPQIDCLREDGRV--TFVDGCWVTADTILYCTGYSYSFPFLDT-------KGIVVV  303 (454)
Q Consensus       242 ~~~~~--------~l~~-~~~i~~~~~v~~v~~~~~v--~~~dG~~i~~D~vI~atG~~~~~~~l~~-------~g~i~v  303 (454)
                      +.+..        .+.+ .++++.++.|+++..++.+  +..++.++++|.||+|+|++|+.+++..       +|.+.+
T Consensus       223 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~V  302 (480)
T 3cgb_A          223 TIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEV  302 (480)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCC
T ss_pred             hcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEE
Confidence            43322        2222 3477888899999765533  3445668999999999999999887653       244555


Q ss_pred             CCCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575          304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |++.+          ++.|++|++||+...           ...+.|..||+++|+++.|..
T Consensus       303 d~~~~----------ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  354 (480)
T 3cgb_A          303 NAYMQ----------TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKR  354 (480)
T ss_dssp             CTTSB----------CSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcc----------CCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCC
Confidence            54433          346999999999843           235789999999999999853

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.97  E-value=1e-30  Score=271.87  Aligned_cols=298  Identities=17%  Similarity=0.242  Sum_probs=193.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-C-------CCCcccccCCCCCCCCccc-cccccceecCCcccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-H-------DVGGQWLYDPNTDQTEVHS-SVYASLRLTSPREIMGY   81 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-~-------~~GG~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (454)
                      ..+||+||||||||++||..|++.|++|+|||+. +       .+||+|.+.+|.|++.+.. ........+..    .|
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~----~~  181 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAE----HF  181 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH----HT
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHH----hC
Confidence            4589999999999999999999999999999973 2       4899998877765431110 00000000000    00


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           82 TDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-----------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                       ++.++.     ........++.+|++++++++           ++.   .....+..++              .|.+.+
T Consensus       182 -g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~~~~~~~~~~--------------~~~v~v  238 (598)
T 2x8g_A          182 -GWSLDR-----SKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT---YLNAKGRLIS--------------PHEVQI  238 (598)
T ss_dssp             -TCCCCG-----GGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEE--------------TTEEEE
T ss_pred             -CccccC-----CcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcC--------------CCEEEE
Confidence             011110     001235577777777666543           222   1122333332              344554


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE  230 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~  230 (454)
                      ...+ +...++.||+||||||  +.|+.|++||.+.+   .+++...... ...+++|+|||+|.+|+|+|..|++.|.+
T Consensus       239 ~~~~-g~~~~~~~d~lviAtG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~  311 (598)
T 2x8g_A          239 TDKN-QKVSTITGNKIILATG--ERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGD  311 (598)
T ss_dssp             ECTT-CCEEEEEEEEEEECCC--EEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EeCC-CCeEEEEeCEEEEeCC--CCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            4322 2234689999999999  89999999997543   2344333222 23467899999999999999999999999


Q ss_pred             EEEecccCCcCccch----h----hhcc-CCCeEEcCceeEEec-------C---CcE--E--EeCCCEEe--eceEEEc
Q 044575          231 VHLSAKSLNISEGLS----K----VISK-HNNLHLHPQIDCLRE-------D---GRV--T--FVDGCWVT--ADTILYC  285 (454)
Q Consensus       231 V~l~~r~~~~~~~~~----~----~l~~-~~~i~~~~~v~~v~~-------~---~~v--~--~~dG~~i~--~D~vI~a  285 (454)
                      |++++|. .+.+.+.    +    .+.+ .++++.+..++++..       +   +.+  .  +.+|++++  +|.||+|
T Consensus       312 Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a  390 (598)
T 2x8g_A          312 VTVMVRS-ILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFA  390 (598)
T ss_dssp             EEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEEC
T ss_pred             EEEEECC-cCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEE
Confidence            9999987 4433322    2    2222 346777766666631       1   323  2  35787765  9999999


Q ss_pred             cCcccCCcCCC---------CCCceeeCCCCcccccCcccCCCCCCCceEecccccc--cchhHHHHHHHHHHHHHcCC
Q 044575          286 TGYSYSFPFLD---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       286 tG~~~~~~~l~---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i~g~  353 (454)
                      +|++|++++|.         ++|.+.+|+...          ++.|++|++||+...  ...+.|..||+.+|.+|.|.
T Consensus       391 ~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~----------ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  459 (598)
T 2x8g_A          391 VGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ----------TTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG  459 (598)
T ss_dssp             SCEEECGGGTBCGGGCCCBCTTSCBCCCTTSB----------CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             eCCccccCccCchhcCceECCCCcEEeCCCCc----------CCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence            99999988742         234555555433          457999999999533  34579999999999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.96  E-value=5.2e-30  Score=256.47  Aligned_cols=265  Identities=21%  Similarity=0.160  Sum_probs=182.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+||||||||+++|..|++.|++|+|||+.+.+||.|.+.                                    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g------------------------------------  164 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG------------------------------------  164 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec------------------------------------
Confidence            46899999999999999999999999999999999999998752                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|...+++..+..++++++++.  +++++.|.                  ..+++.+.      .+.||+|||||
T Consensus       165 ---ip~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~------------------~~v~~~~~------~~~~d~vvlAt  215 (456)
T 2vdc_G          165 ---IPGFKLEKSVVERRVKLLADAGVI--YHPNFEVG------------------RDASLPEL------RRKHVAVLVAT  215 (456)
T ss_dssp             ---SCTTTSCHHHHHHHHHHHHHTTCE--EETTCCBT------------------TTBCHHHH------HSSCSEEEECC
T ss_pred             ---CCCccCCHHHHHHHHHHHHHCCcE--EEeCCEec------------------cEEEhhHh------HhhCCEEEEec
Confidence               011111256777778888888876  77776542                  01222221      24599999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeEEeec---------CCC--------CCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEE
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQMHSHI---------YRV--------PEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVH  232 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~~~~~---------~~~--------~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~  232 (454)
                      |. ..|+.|.+||.+. .+ +.+...         +..        .....+|+|+|||+|.+|+|+|..+.+.|. +|+
T Consensus       216 G~-~~~~~~~ipG~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vt  292 (456)
T 2vdc_G          216 GV-YKARDIKAPGSGL-GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVK  292 (456)
T ss_dssp             CC-CEECCTTCSCCTT-TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEE
T ss_pred             CC-CCCCCCCCCCCcC-CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEE
Confidence            94 2377788888753 22 222111         111        123578999999999999999999999986 699


Q ss_pred             EecccCCc-Cccchh----hhccCCCeEEcCceeEEecCCc---EEEe------------------CC--CEEeeceEEE
Q 044575          233 LSAKSLNI-SEGLSK----VISKHNNLHLHPQIDCLREDGR---VTFV------------------DG--CWVTADTILY  284 (454)
Q Consensus       233 l~~r~~~~-~~~~~~----~l~~~~~i~~~~~v~~v~~~~~---v~~~------------------dG--~~i~~D~vI~  284 (454)
                      ++.|++.. .+...+    ...+.++++....+.++..++.   |++.                  +|  .++++|.||+
T Consensus       293 iv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~  372 (456)
T 2vdc_G          293 CLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIK  372 (456)
T ss_dssp             EECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEE
T ss_pred             EEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEE
Confidence            99998765 332222    2233346666666666643321   2221                  33  3688999999


Q ss_pred             ccCcccCCc--CCC-------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575          285 CTGYSYSFP--FLD-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       285 atG~~~~~~--~l~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g  352 (454)
                      |+|+.|+..  ++.       ++|.+.+|+.        .+. ++.|++|++||+..++ ....|..||+.+|.+|.+
T Consensus       373 A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~--------~~~-Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          373 ALGFEPEDLPNAFDEPELKVTRWGTLLVDHR--------TKM-TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             CSCEECCCHHHHHHSTTSCBCTTSSBCCCTT--------TCB-CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcchhhcccCCeeECCCCCEEECCC--------CCc-CCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence            999999864  443       3345555543        122 4579999999998654 457899999999987753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.96  E-value=2.5e-29  Score=251.81  Aligned_cols=263  Identities=20%  Similarity=0.190  Sum_probs=180.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHH-c------CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRK-E------GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDF   84 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~-~------g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (454)
                      .++|+||||||||+++|..|++ .      |.+|+|||+.+.+||.|.+. +                            
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~g-v----------------------------   53 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG-V----------------------------   53 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT-S----------------------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccc-c----------------------------
Confidence            4789999999999999999999 7      99999999999999998752 1                            


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575           85 PFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD  164 (454)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d  164 (454)
                               .+.++...++..++.++++++++.  +..+..   +   ..          .  |++.++      ++.||
T Consensus        54 ---------~p~~~~~~~~~~~~~~~~~~~~v~--~~~~v~---v---~~----------~--v~~~~~------~~~~d   98 (456)
T 1lqt_A           54 ---------APDHPKIKSISKQFEKTAEDPRFR--FFGNVV---V---GE----------H--VQPGEL------SERYD   98 (456)
T ss_dssp             ---------CTTCTGGGGGHHHHHHHHTSTTEE--EEESCC---B---TT----------T--BCHHHH------HHHSS
T ss_pred             ---------CCCCCCHHHHHHHHHHHHhcCCCE--EEeeEE---E---CC----------E--EEECCC------eEeCC
Confidence                     011223356677777777666654  444432   1   11          1  333222      36799


Q ss_pred             EEEEccCCCCC-CCCCCCCCcCCccceeEEeecC-----------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhh-----
Q 044575          165 AVVVATGHYSY-PRLPSIKGMDKWKRKQMHSHIY-----------RVPEPFRNEVVVVVGNSLSGQDISMELVEV-----  227 (454)
Q Consensus       165 ~vViAtG~~~~-p~~p~i~G~~~~~~~~~~~~~~-----------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~-----  227 (454)
                      +||||||  +. |+.|++||.+ +.+ ++++..+           +....+.+++|+|||+|++|+|+|..|++.     
T Consensus        99 ~lViAtG--~~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~  174 (456)
T 1lqt_A           99 AVIYAVG--AQSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLA  174 (456)
T ss_dssp             EEEECCC--CCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHT
T ss_pred             EEEEeeC--CCCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhc
Confidence            9999999  65 6778899986 333 4444332           233345789999999999999999999974     


Q ss_pred             ---------------c-CeEEEecccCCcCc-----------------------cc------------------hhhh--
Q 044575          228 ---------------A-KEVHLSAKSLNISE-----------------------GL------------------SKVI--  248 (454)
Q Consensus       228 ---------------~-~~V~l~~r~~~~~~-----------------------~~------------------~~~l--  248 (454)
                                     + ++|+++.|++.+..                       .+                  .+.+  
T Consensus       175 ~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (456)
T 1lqt_A          175 RTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRG  254 (456)
T ss_dssp             TSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHH
Confidence                           3 59999999876521                       11                  0111  


Q ss_pred             --cc-------CCCeEEcCceeEEecCC---cEEEe----------------CC--CEEeeceEEEccCcccCCcC----
Q 044575          249 --SK-------HNNLHLHPQIDCLREDG---RVTFV----------------DG--CWVTADTILYCTGYSYSFPF----  294 (454)
Q Consensus       249 --~~-------~~~i~~~~~v~~v~~~~---~v~~~----------------dG--~~i~~D~vI~atG~~~~~~~----  294 (454)
                        .+       ...++....+.++..++   .|.+.                +|  ++++||.||+|+|++|+. +    
T Consensus       255 ~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l~gl~  333 (456)
T 1lqt_A          255 YADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-TPGLP  333 (456)
T ss_dssp             HHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-CTTSC
T ss_pred             HhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-CCCCc
Confidence              12       23566677788887553   26664                45  358899999999999985 2    


Q ss_pred             CCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc--hhHHHHHHHHHHHHHcC
Q 044575          295 LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG--FPFFESQAKWIAQLLSG  352 (454)
Q Consensus       295 l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~--~~~a~~qa~~~a~~i~g  352 (454)
                      +++++.+.+|+..+.         ++.|++|++|++..++.  +..+..||+.+|.+|.+
T Consensus       334 ~d~~g~i~vn~~~rv---------t~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          334 FDDQSGTIPNVGGRI---------NGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             CBTTTTBCCEETTEE---------TTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCeeECCCCcC---------CCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            234455555554331         23699999999985443  35788999999887754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.96  E-value=8.1e-29  Score=251.16  Aligned_cols=300  Identities=14%  Similarity=0.161  Sum_probs=187.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      |+..+||+|||||+||++||..|++.  +.+|+|||+++.++.    ..+..++.    ++.....+. ...+.|.+++.
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y----~r~~lsk~----l~~~~~~~~-~~~~~~~~~~~   78 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY----MRPPLSKE----LWFSDDPNV-TKTLRFKQWNG   78 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB----CSGGGGTG----GGCC--CTH-HHHCEEECTTS
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC----CCCCCCHH----hhcCCccch-hhccccccccc
Confidence            45568999999999999999999887  789999999887642    11111110    000000000 00001111110


Q ss_pred             CCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575           87 VLKK--GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD  164 (454)
Q Consensus        87 ~~~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d  164 (454)
                      ....  ......|...+++.+     ..+.++.  ++++++|.+|+..            .++|++.++.     ++.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~-----~~~~gv~--~~~g~~v~~id~~------------~~~V~~~~g~-----~i~yd  134 (493)
T 1m6i_A           79 KERSIYFQPPSFYVSAQDLPH-----IENGGVA--VLTGKKVVQLDVR------------DNMVKLNDGS-----QITYE  134 (493)
T ss_dssp             CEEESBSSCGGGSBCTTTTTT-----STTCEEE--EEETCCEEEEEGG------------GTEEEETTSC-----EEEEE
T ss_pred             ccccccccchHhhcchhhhhh-----hhcCCeE--EEcCCEEEEEECC------------CCEEEECCCC-----EEECC
Confidence            0000  000000111111100     0122443  7778899999865            5568776654     78999


Q ss_pred             EEEEccCCCCCCCCCCCCCcCC--ccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhh----hcCeEEE
Q 044575          165 AVVVATGHYSYPRLPSIKGMDK--WKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVE----VAKEVHL  233 (454)
Q Consensus       165 ~vViAtG~~~~p~~p~i~G~~~--~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~----~~~~V~l  233 (454)
                      +||||||  +.|+.|+++|...  +...+.......+.     ....+++|+|||+|.+|+|+|..|++    .+.+|++
T Consensus       135 ~lviATG--s~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~  212 (493)
T 1m6i_A          135 KCLIATG--GTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ  212 (493)
T ss_dssp             EEEECCC--EEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCC--CCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEE
Confidence            9999999  8888776555321  11111111111000     01136899999999999999999987    4678999


Q ss_pred             ecccCCcC-----ccc----hhhhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCCCC---
Q 044575          234 SAKSLNIS-----EGL----SKVISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFLDT---  297 (454)
Q Consensus       234 ~~r~~~~~-----~~~----~~~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~~---  297 (454)
                      +.+.+.+.     +.+    .+.+.+ .++++.+..|+++..+ +  .|++.||+++++|.||+|+|++|+.+++..   
T Consensus       213 v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          213 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL  292 (493)
T ss_dssp             ECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTC
T ss_pred             EecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCC
Confidence            98875432     112    222333 3578888899998643 2  477889999999999999999999887531   


Q ss_pred             -----CCceeeCCCCcccccCcccCCCCCCCceEeccccccc----------chhHHHHHHHHHHHHHcCCC
Q 044575          298 -----KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI----------GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       298 -----~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~----------~~~~a~~qa~~~a~~i~g~~  354 (454)
                           .|.+.+|+.++          + .|++|++||+...+          .++.|..||+.+|++|.|..
T Consensus       293 ~~~~~~ggi~Vd~~l~----------t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~  353 (493)
T 1m6i_A          293 EIDSDFGGFRVNAELQ----------A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  353 (493)
T ss_dssp             CBCTTTCSEECCTTCE----------E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ccccCCCcEEECCCcc----------c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence                 25666666543          2 38999999987532          34589999999999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.96  E-value=5.7e-28  Score=262.28  Aligned_cols=294  Identities=16%  Similarity=0.131  Sum_probs=200.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+||||||||++||..|++.|++|+|||+++.+||.|.+  + + +    ...              .        
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~--~-~-k----~~i--------------~--------  176 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD--T-A-G----EQI--------------D--------  176 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG--S-S-C----CEE--------------T--------
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc--C-C-c----ccc--------------C--------
Confidence            4589999999999999999999999999999999999999873  1 0 0    000              0        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee-cCCCeEEEEEeCEEEE
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE-KKADKVVEEVFDAVVV  168 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~d~vVi  168 (454)
                           . ....++...+.+....+ ++.  ++++++|.+++.......+..... .+.+...+ ...+...++.||+|||
T Consensus       177 -----~-~~~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~~~~~v~~~~~-~~~v~~~~~~~~~~~~~i~~d~lVl  247 (965)
T 2gag_A          177 -----G-MDSSAWIEQVTSELAEAEETT--HLQRTTVFGSYDANYLIAAQRRTV-HLDGPSGPGVSRERIWHIRAKQVVL  247 (965)
T ss_dssp             -----T-EEHHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTTEEEEEEECST-TCSSCCCTTCCSEEEEEEEEEEEEE
T ss_pred             -----C-CCHHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCCceeeeEeecc-cccccccccCCCCceEEEECCEEEE
Confidence                 0 01234444444444443 555  778889988864311000000000 11111100 0001223689999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeec---C-CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHI---Y-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL  244 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~---~-~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~  244 (454)
                      |||  +.|+.|++||.+. .+ ++++..   + .......+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.+..
T Consensus       248 ATG--s~p~~~~ipG~~~-~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~~  323 (965)
T 2gag_A          248 ATG--AHERPIVFENNDR-PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAAA  323 (965)
T ss_dssp             CCC--EEECCCCCBTCCS-TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHHH
T ss_pred             CCC--CccCCCCCCCCCC-CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchhH
Confidence            999  8899899999764 22 333321   1 11223467899999999999999999999999999999998876542


Q ss_pred             hhhhccCCCeEEcCceeEEec--CC---cEEEeC-------C--CEEeeceEEEccCcccCCcCCCC-CCceeeCCCCcc
Q 044575          245 SKVISKHNNLHLHPQIDCLRE--DG---RVTFVD-------G--CWVTADTILYCTGYSYSFPFLDT-KGIVVVDDDRVG  309 (454)
Q Consensus       245 ~~~l~~~~~i~~~~~v~~v~~--~~---~v~~~d-------G--~~i~~D~vI~atG~~~~~~~l~~-~g~i~v~~~~~~  309 (454)
                      ..+-...++++.+..|+++..  ++   .|++.+       |  +++++|.||+|+|++|+..++.. .+.+.+|+....
T Consensus       324 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~~~~  403 (965)
T 2gag_A          324 AQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTIHA  403 (965)
T ss_dssp             HHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTCCEEEETTTTE
T ss_pred             HHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCcccc
Confidence            222233468899999999976  33   467765       5  57899999999999999887653 467777775431


Q ss_pred             cccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcC
Q 044575          310 PLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       310 ~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g  352 (454)
                        +   .+.++.|+||++|++.....+..|..||+.+|.++.+
T Consensus       404 --~---v~~ts~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          404 --F---VPADAVANQHLAGAMTGRLDTASALSTGAATGAAAAT  441 (965)
T ss_dssp             --E---EECSCCTTEEECGGGGTCCSHHHHHHHHHHHHHHHHH
T ss_pred             --c---ccCCCCCCEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence              0   0114579999999999776667899999999988864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.95  E-value=8.5e-29  Score=247.72  Aligned_cols=271  Identities=14%  Similarity=0.191  Sum_probs=184.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHH---cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRK---EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~---~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++|+|||||++|+++|..|++   .|++|+|||+++...                  |.......              
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~------------------~~~~~~~~--------------   51 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ------------------FVPSNPWV--------------   51 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE------------------CGGGHHHH--------------
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc------------------ccCCcccc--------------
Confidence            4799999999999999999999   799999999987421                  10000000              


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                           .......+++..++.+++++.++.  +. ..+|+.|+..            ..+|++.++.     ++.||+||+
T Consensus        52 -----~~g~~~~~~~~~~l~~~~~~~gv~--~~-~~~v~~id~~------------~~~V~~~~g~-----~i~~d~lvi  106 (437)
T 3sx6_A           52 -----GVGWKERDDIAFPIRHYVERKGIH--FI-AQSAEQIDAE------------AQNITLADGN-----TVHYDYLMI  106 (437)
T ss_dssp             -----HHTSSCHHHHEEECHHHHHTTTCE--EE-CSCEEEEETT------------TTEEEETTSC-----EEECSEEEE
T ss_pred             -----ccCccCHHHHHHHHHHHHHHCCCE--EE-EeEEEEEEcC------------CCEEEECCCC-----EEECCEEEE
Confidence                 001123356666667777777776  43 5789888765            3357776654     689999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCC--------CCCCeEEEEcCCCCH------HHHHHHHh----hhcCe
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEP--------FRNEVVVVVGNSLSG------QDISMELV----EVAKE  230 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~--------~~~k~vvVVG~G~sg------~e~A~~l~----~~~~~  230 (454)
                      |||  +.|+.|.+||++.+.+...+.+.+.....        .++++++|||+|++|      +|+|..++    +.+.+
T Consensus       107 AtG--~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~  184 (437)
T 3sx6_A          107 ATG--PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMR  184 (437)
T ss_dssp             CCC--CEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCG
T ss_pred             CCC--CCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCc
Confidence            999  89999999998765333332222211100        114567899997654      88886554    44543


Q ss_pred             -----EEEecccCCcC----c---c----chhhhcc-CCCeEEcCceeEEecCCcEEEeC---------CCEEeeceEEE
Q 044575          231 -----VHLSAKSLNIS----E---G----LSKVISK-HNNLHLHPQIDCLREDGRVTFVD---------GCWVTADTILY  284 (454)
Q Consensus       231 -----V~l~~r~~~~~----~---~----~~~~l~~-~~~i~~~~~v~~v~~~~~v~~~d---------G~~i~~D~vI~  284 (454)
                           |+++++.+.+.    +   .    +.+.+.+ .++++.+..|+++++++ +++.+         ++++++|.+++
T Consensus       185 ~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~-v~~~~~~~~g~~~~~~~i~~D~vv~  263 (437)
T 3sx6_A          185 DKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNK-MYVTQVDEKGETIKEMVLPVKFGMM  263 (437)
T ss_dssp             GGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEEECTTSCEEEEEEEECSEEEE
T ss_pred             ccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECCe-EEEEecccCCccccceEEEEeEEEE
Confidence                 99999988651    1   1    1223333 35788888999998764 66665         66789999999


Q ss_pred             ccCcccCCcC------CCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-------------chhHHHHHHHH
Q 044575          285 CTGYSYSFPF------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-------------GFPFFESQAKW  345 (454)
Q Consensus       285 atG~~~~~~~------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~a~~qa~~  345 (454)
                      |+|+.++.++      ++++|.+.+|++.+.         .+.|++|++||+...+             ....|..||+.
T Consensus       264 ~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t---------~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~  334 (437)
T 3sx6_A          264 IPAFKGVPAVAGVEGLCNPGGFVLVDEHQRS---------KKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSA  334 (437)
T ss_dssp             ECCEECCHHHHTSTTTBCTTSCBCBCTTSBB---------SSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHH
T ss_pred             cCCCcCchhhhccccccCCCCcEEeChhccC---------CCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHH
Confidence            9999876332      344567777775542         2469999999987532             34589999999


Q ss_pred             HHHHHc
Q 044575          346 IAQLLS  351 (454)
Q Consensus       346 ~a~~i~  351 (454)
                      +|++|.
T Consensus       335 aA~ni~  340 (437)
T 3sx6_A          335 AVHNIK  340 (437)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988775

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.95  E-value=9.1e-29  Score=245.56  Aligned_cols=272  Identities=19%  Similarity=0.165  Sum_probs=183.7

Q ss_pred             CcEEEECcChHHHHHHHHHHH---cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRK---EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~---~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++|+|||||++|+++|..|++   .|.+|+|||+++.++....    .                 +.             
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~----~-----------------~~-------------   47 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA----L-----------------PH-------------   47 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS----S-----------------CC-------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc----h-----------------hh-------------
Confidence            589999999999999999999   8999999999875422110    0                 00             


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         ........+++..++.+.++++++.  +..+ +|++++..            ...|++.++. +...++.||+||+|
T Consensus        48 ---~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~------------~~~V~~~~g~-~~~~~~~~d~lViA  108 (409)
T 3h8l_A           48 ---VAIGVRDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAK------------SSMVYYTKPD-GSMAEEEYDYVIVG  108 (409)
T ss_dssp             ---CCSSCCCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETT------------TTEEEEECTT-SCEEEEECSEEEEC
T ss_pred             ---cccCCcCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCC------------CCEEEEccCC-cccceeeCCEEEEC
Confidence               0000011122334455566666776  5555 88888754            3457776654 33456899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCC------CCeEEEEcCC-------------------C------CHH
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFR------NEVVVVVGNS-------------------L------SGQ  218 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~------~k~vvVVG~G-------------------~------sg~  218 (454)
                      ||  +.|+.|.+||++.   ...+.+.+.......      .++++|||+|                   .      .++
T Consensus       109 tG--~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~  183 (409)
T 3h8l_A          109 IG--AHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVF  183 (409)
T ss_dssp             CC--CEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHH
T ss_pred             CC--CCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHH
Confidence            99  7899888999764   122222222111111      1567799999                   2      378


Q ss_pred             HHHHHHh----hhc----CeEEEecccCCcCccch--------hhhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          219 DISMELV----EVA----KEVHLSAKSLNISEGLS--------KVISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       219 e~A~~l~----~~~----~~V~l~~r~~~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      |+|..++    +.|    .+|+++.+.+ ..+.+.        +.+.+ .++++.+..|+++++++ |+++||+++++|.
T Consensus       184 e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-v~~~~g~~~~~D~  261 (409)
T 3h8l_A          184 EMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHE-IVDEKGNTIPADI  261 (409)
T ss_dssp             HHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSE-EEETTSCEEECSE
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCe-EEECCCCEEeeeE
Confidence            8886655    455    3899999987 432222        22222 35788889999998764 9999999999999


Q ss_pred             EEEccCcccCCcCC--------CCCCceeeCCCCcccccCcccCCCCCCCceEecccccc---cchhHHHHHHHHHHHHH
Q 044575          282 ILYCTGYSYSFPFL--------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL---IGFPFFESQAKWIAQLL  350 (454)
Q Consensus       282 vI~atG~~~~~~~l--------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~---~~~~~a~~qa~~~a~~i  350 (454)
                      ||+|+|+.|+ +++        +++|.+.+|+..+.         .+.|++|++||+...   .....|+.||+.+|++|
T Consensus       262 vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~---------~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i  331 (409)
T 3h8l_A          262 TILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVS---------IKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHL  331 (409)
T ss_dssp             EEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBB---------SSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCcc-HHHHhccccCcCCCCCEEeCccccc---------CCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999987 332        34455666654431         246999999999853   34578999999999988


Q ss_pred             cCCC
Q 044575          351 SGKR  354 (454)
Q Consensus       351 ~g~~  354 (454)
                      .+.+
T Consensus       332 ~~~l  335 (409)
T 3h8l_A          332 ANRL  335 (409)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6553

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.95  E-value=1.1e-28  Score=247.59  Aligned_cols=263  Identities=17%  Similarity=0.212  Sum_probs=178.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .++|+|||||++|+++|..|++.|  .+|+|||+.+.+||.|.+. +.                                
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g-~~--------------------------------   52 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG-VA--------------------------------   52 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT-SC--------------------------------
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecc-cC--------------------------------
Confidence            479999999999999999999998  9999999999999988752 10                                


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                           +.++...++..++.++++++++.  +++++.|.      .          .  |++.+.      .+.||+||+|
T Consensus        53 -----p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~------~----------~--V~~~~~------~~~~d~lVlA  101 (460)
T 1cjc_A           53 -----PDHPEVKNVINTFTQTARSDRCA--FYGNVEVG------R----------D--VTVQEL------QDAYHAVVLS  101 (460)
T ss_dssp             -----TTCGGGGGHHHHHHHHHTSTTEE--EEBSCCBT------T----------T--BCHHHH------HHHSSEEEEC
T ss_pred             -----CCCccHHHHHHHHHHHHHhCCcE--EEeeeEEe------e----------E--EEeccc------eEEcCEEEEe
Confidence                 11122345677777777777765  66665441      0          1  222221      3579999999


Q ss_pred             cCCCCCC-CCCCCCCcCCccceeEEeecC----------CCC-CCCCCCeEEEEcCCCCHHHHHHHHh------------
Q 044575          170 TGHYSYP-RLPSIKGMDKWKRKQMHSHIY----------RVP-EPFRNEVVVVVGNSLSGQDISMELV------------  225 (454)
Q Consensus       170 tG~~~~p-~~p~i~G~~~~~~~~~~~~~~----------~~~-~~~~~k~vvVVG~G~sg~e~A~~l~------------  225 (454)
                      ||  +.| +.|++||.+. .+ ++++..+          ... ..+.+++|+|||+|++|+|+|..|+            
T Consensus       102 tG--s~~~~~~~ipG~~~-~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~  177 (460)
T 1cjc_A          102 YG--AEDHQALDIPGEEL-PG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDIT  177 (460)
T ss_dssp             CC--CCEECCCCCTTTTS-TT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCC
T ss_pred             cC--cCCCCCCCCCCCCC-Cc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhcccccc
Confidence            99  664 7788999752 22 3333322          111 1346899999999999999999999            


Q ss_pred             --------hhcC-eEEEecccCCc--------------Ccc---------c-----------------hh----hhcc--
Q 044575          226 --------EVAK-EVHLSAKSLNI--------------SEG---------L-----------------SK----VISK--  250 (454)
Q Consensus       226 --------~~~~-~V~l~~r~~~~--------------~~~---------~-----------------~~----~l~~--  250 (454)
                              +.+. +|+++.|++.+              .+.         +                 .+    .+.+  
T Consensus       178 ~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  257 (460)
T 1cjc_A          178 EAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKP  257 (460)
T ss_dssp             HHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhcc
Confidence                    4555 79999998764              111         0                 01    1111  


Q ss_pred             -------------CCCeEEcCceeEEecC--C----cEEEe---------------CC--CEEeeceEEEccCcccCCc-
Q 044575          251 -------------HNNLHLHPQIDCLRED--G----RVTFV---------------DG--CWVTADTILYCTGYSYSFP-  293 (454)
Q Consensus       251 -------------~~~i~~~~~v~~v~~~--~----~v~~~---------------dG--~~i~~D~vI~atG~~~~~~-  293 (454)
                                   ..+++....+.++..+  +    .|.+.               +|  +++++|.||+|+|++|+.- 
T Consensus       258 ~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l~  337 (460)
T 1cjc_A          258 GVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPID  337 (460)
T ss_dssp             CHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCCC
T ss_pred             ccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCCC
Confidence                         2356666677777643  2    24443               35  4788999999999999851 


Q ss_pred             -C--CCCCCceeeCCCCcccccCcccCCCC-CCCceEecccccccc--hhHHHHHHHHHHHHHcC
Q 044575          294 -F--LDTKGIVVVDDDRVGPLYEHTFPPSL-APSLSFVGIPRKLIG--FPFFESQAKWIAQLLSG  352 (454)
Q Consensus       294 -~--l~~~g~i~v~~~~~~~~~~~~~~~~~-~p~l~~iG~~~~~~~--~~~a~~qa~~~a~~i~g  352 (454)
                       +  +++++.+.+|+..+          +. .|++|++|++...+.  +..+..||+.+|.++.+
T Consensus       338 gl~~~d~~g~i~vn~~~r----------t~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          338 PSVPFDPKLGVVPNMEGR----------VVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             TTSCCBTTTTBCCEETTE----------ETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCeeECCCCc----------CcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence             1  23334555555443          23 599999999986443  45788999998887754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.95  E-value=1.3e-28  Score=259.60  Aligned_cols=261  Identities=17%  Similarity=0.117  Sum_probs=193.8

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      +...+||+|||||+||++||..|++.|++|+|||+++.+||.|.+....                               
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~-------------------------------  436 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESAL-------------------------------  436 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTS-------------------------------
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCC-------------------------------
Confidence            3456899999999999999999999999999999999999998743111                               


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                            +.+....++.+|+....+++ ++.  ++++++|.                      ..+..     ++.||+||
T Consensus       437 ------p~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~----------------------~~~~~-----~~~~d~lv  481 (690)
T 3k30_A          437 ------PGLSAWGRVKEYREAVLAELPNVE--IYRESPMT----------------------GDDIV-----EFGFEHVI  481 (690)
T ss_dssp             ------TTCGGGGHHHHHHHHHHHTCTTEE--EESSCCCC----------------------HHHHH-----HTTCCEEE
T ss_pred             ------CchhHHHHHHHHHHHHHHHcCCCE--EEECCeec----------------------HHHHh-----hcCCCEEE
Confidence                  11123367788888888776 554  55554321                      11111     45799999


Q ss_pred             EccCCCCC--------CCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEc--CCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          168 VATGHYSY--------PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVG--NSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       168 iAtG~~~~--------p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG--~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      +|||  +.        |..|++||.+.  ..++++.++.......+++|+|||  +|.+|+|+|..|++.+.+|+++++.
T Consensus       482 lAtG--~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~  557 (690)
T 3k30_A          482 TATG--ATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPG  557 (690)
T ss_dssp             ECCC--EEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EcCC--CccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecc
Confidence            9999  55        56788888764  345566555545556789999999  9999999999999999999999998


Q ss_pred             CCcCccc---------hhhhcc-CCCeEEcCceeEEecCCcEEEe-----CCCEEeeceEEEccCcccCCcCCCCCCcee
Q 044575          238 LNISEGL---------SKVISK-HNNLHLHPQIDCLREDGRVTFV-----DGCWVTADTILYCTGYSYSFPFLDTKGIVV  302 (454)
Q Consensus       238 ~~~~~~~---------~~~l~~-~~~i~~~~~v~~v~~~~~v~~~-----dG~~i~~D~vI~atG~~~~~~~l~~~g~i~  302 (454)
                      +.+.+..         .+.+.+ .++++.++.|+++..++ +.+.     +++++++|.||+|+|++|+..++...+. .
T Consensus       558 ~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~-~  635 (690)
T 3k30_A          558 AQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVTARLPREELYLDLVA-R  635 (690)
T ss_dssp             SSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE-EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH-H
T ss_pred             cccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe-EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh-h
Confidence            8764322         222333 35788899999998765 4443     4557899999999999999876542110 0


Q ss_pred             eCCCCcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCC
Q 044575          303 VDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       303 v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      .+             .++.|++|++||+.....+..|..||+.+|.++.+.+
T Consensus       636 ~~-------------~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l  674 (690)
T 3k30_A          636 RD-------------AGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVL  674 (690)
T ss_dssp             HH-------------HTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCC
T ss_pred             hc-------------ccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence            00             1456999999999987777789999999999998774

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.95  E-value=2.1e-28  Score=258.92  Aligned_cols=270  Identities=14%  Similarity=0.123  Sum_probs=187.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ...++|+|||||+||++||..|++.|++|+|||+++.+||.|.+..+.+                               
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~p-------------------------------  435 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALP-------------------------------  435 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTST-------------------------------
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCC-------------------------------
Confidence            3468999999999999999999999999999999999999998543211                               


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                            .++....+.+|+...++.+.     ..+..+..+..             ...|++.++.     .+.||+||||
T Consensus       436 ------g~~~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~-------------~~~v~~~~~~-----~~~~d~vviA  486 (729)
T 1o94_A          436 ------GLGEWSYHRDYRETQITKLL-----KKNKESQLALG-------------QKPMTADDVL-----QYGADKVIIA  486 (729)
T ss_dssp             ------TCGGGHHHHHHHHHHHHHHH-----HHSTTCEEECS-------------CCCCCHHHHH-----TSCCSEEEEC
T ss_pred             ------ChHHHHHHHHHHHHHHHHhh-----cccCCceEEEe-------------CeEEehhhcc-----ccCCCEEEEc
Confidence                  11122455666666555431     00111122211             1112222222     4679999999


Q ss_pred             cCCCCC--------CCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEc--CCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          170 TGHYSY--------PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVG--NSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       170 tG~~~~--------p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG--~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ||  +.        |..|++||.+.+...+++..++.......+++|+|||  +|.+|+|+|..|++.|++|+++++.+ 
T Consensus       487 tG--~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-  563 (729)
T 1o94_A          487 TG--ARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-  563 (729)
T ss_dssp             CC--EEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-
T ss_pred             CC--CCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-
Confidence            99  55        5678899987544455565554444445789999999  99999999999999999999999988 


Q ss_pred             cCc---------cchhhhc-cCCCeEEcCceeEEecCCcEEEe----CC-CE------------------EeeceEEEcc
Q 044575          240 ISE---------GLSKVIS-KHNNLHLHPQIDCLREDGRVTFV----DG-CW------------------VTADTILYCT  286 (454)
Q Consensus       240 ~~~---------~~~~~l~-~~~~i~~~~~v~~v~~~~~v~~~----dG-~~------------------i~~D~vI~at  286 (454)
                      +.+         .+.+.+. ..++++.+..++++..++ +.+.    ++ ++                  +++|.||+|+
T Consensus       564 l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~  642 (729)
T 1o94_A          564 LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVT  642 (729)
T ss_dssp             TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEES
T ss_pred             ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe-EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECC
Confidence            532         1222232 345788888899997654 4432    33 22                  8999999999


Q ss_pred             CcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCC
Q 044575          287 GYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       287 G~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |++|+.+++..- ...+|+...          ++.|++|++||+.....+..|..||+.+|.+|.+..
T Consensus       643 G~~p~~~l~~~l-~~~vd~~~~----------t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l  699 (729)
T 1o94_A          643 GRHSECTLWNEL-KARESEWAE----------NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN  699 (729)
T ss_dssp             CEEECCHHHHHH-HHTGGGTGG----------GTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred             CCCCChHHHHHH-hhhcccccc----------cCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence            999998765421 111232221          346999999999876667789999999999997754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.94  E-value=5.5e-27  Score=246.50  Aligned_cols=247  Identities=20%  Similarity=0.330  Sum_probs=179.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..+||+|||||+||++||..|++.|++|+|||+++.+||.|.+....+.                               
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~-------------------------------  420 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG-------------------------------  420 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTT-------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCC-------------------------------
Confidence            4589999999999999999999999999999999999999875322110                               


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE-EeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE-VFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vViA  169 (454)
                            .....++.+++.+.++++++.  +++++.|..                         .     .+ .||+||||
T Consensus       421 ------~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-------------------------~-----~~~~~d~lviA  462 (671)
T 1ps9_A          421 ------KEEFYETLRYYRRMIEVTGVT--LKLNHTVTA-------------------------D-----QLQAFDETILA  462 (671)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHTCE--EEESCCCCS-------------------------S-----SSCCSSEEEEC
T ss_pred             ------HHHHHHHHHHHHHHHHHcCCE--EEeCcEecH-------------------------H-----HhhcCCEEEEc
Confidence                  011245666777777888876  666664321                         0     12 69999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC--------------------
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK--------------------  229 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~--------------------  229 (454)
                      ||  +.|+.|++||.+.  ..++++.++.......+++|+|||+|.+|+|+|..|++.|.                    
T Consensus       463 tG--~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~  538 (671)
T 1ps9_A          463 SG--IVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQ  538 (671)
T ss_dssp             CC--EEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCC
T ss_pred             cC--CCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhccccccc
Confidence            99  8999999999865  23455544443444578999999999999999999998764                    


Q ss_pred             -----------------eEEEecccCCcC-ccc--------hhhhc-cCCCeEEcCceeEEecCCcEEE-eCC--CEEee
Q 044575          230 -----------------EVHLSAKSLNIS-EGL--------SKVIS-KHNNLHLHPQIDCLREDGRVTF-VDG--CWVTA  279 (454)
Q Consensus       230 -----------------~V~l~~r~~~~~-~~~--------~~~l~-~~~~i~~~~~v~~v~~~~~v~~-~dG--~~i~~  279 (454)
                                       +|+++.+.+... ..+        .+.+. ..++++.+..|+++.+++ +++ .+|  +++++
T Consensus       539 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-v~~~~~G~~~~i~~  617 (671)
T 1ps9_A          539 QAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG-LHVVINGETQVLAV  617 (671)
T ss_dssp             SGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE-EEEEETTEEEEECC
T ss_pred             ccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCe-EEEecCCeEEEEeC
Confidence                             455555544321 111        22233 235788888899998664 666 688  56889


Q ss_pred             ceEEEccCcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc--hhHHHHHHHHHHHHH
Q 044575          280 DTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG--FPFFESQAKWIAQLL  350 (454)
Q Consensus       280 D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~--~~~a~~qa~~~a~~i  350 (454)
                      |.||+|+|++|+..++..   +  +              ...+++|++||+.....  ...|..||..+|.+|
T Consensus       618 D~Vi~a~G~~p~~~l~~~---l--~--------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          618 DNVVICAGQEPNRALAQP---L--I--------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             SEEEECCCEEECCTTHHH---H--H--------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCccccHHHHHH---H--H--------------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence            999999999999776542   0  0              01268999999986543  678999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.93  E-value=6.2e-26  Score=247.99  Aligned_cols=264  Identities=17%  Similarity=0.196  Sum_probs=175.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .+||+||||||||++||..|++.|+ +|+|||+.+.+||.+.+.                                    
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~------------------------------------  230 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE------------------------------------  230 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT------------------------------------
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc------------------------------------
Confidence            5799999999999999999999999 799999999999987642                                    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                         .+.|....++.++..++.+++++.  +++++.|..                 +.+++.++.     ++.||+|||||
T Consensus       231 ---ip~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-----------------~~v~~~~~~-----~~~~d~vvlAt  283 (1025)
T 1gte_A          231 ---IPQFRLPYDVVNFEIELMKDLGVK--IICGKSLSE-----------------NEITLNTLK-----EEGYKAAFIGI  283 (1025)
T ss_dssp             ---SCTTTSCHHHHHHHHHHHHTTTCE--EEESCCBST-----------------TSBCHHHHH-----HTTCCEEEECC
T ss_pred             ---CCcccCCHHHHHHHHHHHHHCCcE--EEcccEecc-----------------ceEEhhhcC-----ccCCCEEEEec
Confidence               011111245666667777777776  677765521                 112222221     35699999999


Q ss_pred             CCCC-CCCCCCC-CCcCCccceeEEeecC---------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEE
Q 044575          171 GHYS-YPRLPSI-KGMDKWKRKQMHSHIY---------------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVH  232 (454)
Q Consensus       171 G~~~-~p~~p~i-~G~~~~~~~~~~~~~~---------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~  232 (454)
                      |  + .|+.+++ +|++...+ ++++.++               +......+++|+|||||.+|+|+|..+.+.|. +||
T Consensus       284 G--a~~p~~l~~~~G~~~~~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vt  360 (1025)
T 1gte_A          284 G--LPEPKTDDIFQGLTQDQG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVF  360 (1025)
T ss_dssp             C--CCEECCCGGGTTCCTTTT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEE
T ss_pred             C--CCCCCCCCCCCCCCCCCC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEE
Confidence            9  6 5776654 46543222 2332221               11112236799999999999999999999985 899


Q ss_pred             EecccCC-cCccchh----hhccCCCeEEcCceeEEec-CCc---EEEe------C-------C--CEEeeceEEEccCc
Q 044575          233 LSAKSLN-ISEGLSK----VISKHNNLHLHPQIDCLRE-DGR---VTFV------D-------G--CWVTADTILYCTGY  288 (454)
Q Consensus       233 l~~r~~~-~~~~~~~----~l~~~~~i~~~~~v~~v~~-~~~---v~~~------d-------G--~~i~~D~vI~atG~  288 (454)
                      +++|++. ..+.+.+    ...+.++++....+.++.. ++.   |++.      +       |  .++++|.||+|+|+
T Consensus       361 vv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~  440 (1025)
T 1gte_A          361 LVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  440 (1025)
T ss_dssp             EECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCC
Confidence            9999873 3332222    2223345656666666653 222   3332      2       2  26789999999999


Q ss_pred             ccC-CcCC--------CCCCceeeCC-CCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHc
Q 044575          289 SYS-FPFL--------DTKGIVVVDD-DRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       289 ~~~-~~~l--------~~~g~i~v~~-~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~  351 (454)
                      +|+ ..++        +++|.+.+|+ ...          ++.|++|++||+...+ ....|..||+.+|++|.
T Consensus       441 ~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~  504 (1025)
T 1gte_A          441 VLRDPKVKEALSPIKFNRWDLPEVDPETMQ----------TSEPWVFAGGDIVGMANTTVESVNDGKQASWYIH  504 (1025)
T ss_dssp             ECCCHHHHHHTTTSCBCTTSSBCCCTTTCB----------CSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhhhcccCceECCCCCEEECCCCCc----------cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            864 3332        2345555554 222          4579999999998744 45788899999998885

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.93  E-value=4.3e-25  Score=218.53  Aligned_cols=278  Identities=18%  Similarity=0.155  Sum_probs=171.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .|+|||||||+||+++|.+|++.+  .+|+|||+++......                  +............       
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p------------------~~~~v~~g~~~~~-------   56 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY------------------MSNEVIGGDRELA-------   56 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST------------------THHHHHHTSSCGG-------
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc------------------CHHHHhcCCCCHH-------
Confidence            378999999999999999999875  5899999976421110                  0000000000000       


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                                  ++...+..+ ...++.   ....+|++|+..            ..+|++.++.     ++.||+||||
T Consensus        57 ------------~~~~~~~~~-~~~gv~---~i~~~v~~id~~------------~~~v~~~~g~-----~i~yd~LviA  103 (401)
T 3vrd_B           57 ------------SLRVGYDGL-RAHGIQ---VVHDSALGIDPD------------KKLVKTAGGA-----EFAYDRCVVA  103 (401)
T ss_dssp             ------------GGEECSHHH-HHTTCE---EECSCEEEEETT------------TTEEEETTSC-----EEECSEEEEC
T ss_pred             ------------HHhhCHHHH-HHCCCE---EEEeEEEEEEcc------------CcEEEecccc-----eeecceeeec
Confidence                        000001112 234554   345688898865            4457777665     7899999999


Q ss_pred             cCCCCCCCCCCCCCcCCccce-eEEeecCCC--------CCCCCCCeEEEEcCCC-------CHHHHHHH----Hhhh--
Q 044575          170 TGHYSYPRLPSIKGMDKWKRK-QMHSHIYRV--------PEPFRNEVVVVVGNSL-------SGQDISME----LVEV--  227 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~-~~~~~~~~~--------~~~~~~k~vvVVG~G~-------sg~e~A~~----l~~~--  227 (454)
                      ||  +.++.|.+||.++..+. ..|+.....        ...+.....+|+++|.       .+.|++.+    +.+.  
T Consensus       104 tG--~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~  181 (401)
T 3vrd_B          104 PG--IDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKS  181 (401)
T ss_dssp             CC--EEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCT
T ss_pred             cC--CccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCC
Confidence            99  89999999998764322 122211100        0112223444444433       23444444    4444  


Q ss_pred             cCeEEEecccCCc--Cccc----hhhh----ccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCC-
Q 044575          228 AKEVHLSAKSLNI--SEGL----SKVI----SKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSF-  292 (454)
Q Consensus       228 ~~~V~l~~r~~~~--~~~~----~~~l----~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~-  292 (454)
                      ..+|+++.+.+.+  .+.+    .+.+    .+. ++++.+..+..++.+.   .|.+.+|+++++|.+++++|.+|+. 
T Consensus       182 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~  261 (401)
T 3vrd_B          182 KSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKI  261 (401)
T ss_dssp             TCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHH
T ss_pred             CCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchh
Confidence            3689999988775  2222    2222    222 3577777777775332   6888999999999999999999872 


Q ss_pred             ----cCCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc----chhHHHHHHHHHHHHHc----CCCCCC
Q 044575          293 ----PFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI----GFPFFESQAKWIAQLLS----GKRTLP  357 (454)
Q Consensus       293 ----~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~----~~~~a~~qa~~~a~~i~----g~~~lp  357 (454)
                          .+.+++|.|.||+...        ..+.+|++|++||+....    +...|..||+++|++|.    |+...|
T Consensus       262 ~~~~gl~~~~G~i~VD~~tl--------~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~~~~~  330 (401)
T 3vrd_B          262 AQSASLTNDSGWCPVDIRTF--------ESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGEEPGT  330 (401)
T ss_dssp             HHHTTCCCTTSSBCBCTTTC--------BBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HhhccccccCCCEEECCCcc--------eecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                2244667788876532        114579999999987532    34688999999998764    665444

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.92  E-value=3.6e-25  Score=224.38  Aligned_cols=255  Identities=17%  Similarity=0.136  Sum_probs=173.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||++|+++|.+|++. ++|+|||+++.+||.|.+...         .           .+   +++      
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~---------~-----------~~---g~~------  157 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGI---------K-----------QE---GFN------  157 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCS---------E-----------ET---TTT------
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeecccc---------c-----------cC---CCC------
Confidence            47999999999999999999999 999999999999998874210         0           00   000      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++...+.+.. ..++.  ++++++|.+|+....          .+.+...+.  +....+.||+||+|||
T Consensus       158 ----~--~~~~~~~~l~~~l-~~~v~--~~~~~~v~~i~~~~~----------~~~~~~~~~--~~~~~~~~d~lvlAtG  216 (493)
T 1y56_A          158 ----K--DSRKVVEELVGKL-NENTK--IYLETSALGVFDKGE----------YFLVPVVRG--DKLIEILAKRVVLATG  216 (493)
T ss_dssp             ----E--EHHHHHHHHHHTC-CTTEE--EETTEEECCCEECSS----------SEEEEEEET--TEEEEEEESCEEECCC
T ss_pred             ----C--CHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEcCCc----------EEEEEEecC--CeEEEEECCEEEECCC
Confidence                0  1233333332222 22433  678899988887543          455544332  2334689999999999


Q ss_pred             CCCCCCCCCCCCcCCccceeEEeecCC----CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh
Q 044575          172 HYSYPRLPSIKGMDKWKRKQMHSHIYR----VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV  247 (454)
Q Consensus       172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~----~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~  247 (454)
                        +.|+.|.+||.+. .+ +++...+.    ......+++++|||+|.+|+|  ..+.+                     
T Consensus       217 --a~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~---------------------  269 (493)
T 1y56_A          217 --AIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELER---------------------  269 (493)
T ss_dssp             --EEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHH---------------------
T ss_pred             --CCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHh---------------------
Confidence              8899888998753 22 23322211    112345799999999999998  22222                     


Q ss_pred             hccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCCC---------Ccee-eCCCCcccccCc
Q 044575          248 ISKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDTK---------GIVV-VDDDRVGPLYEH  314 (454)
Q Consensus       248 l~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~---------g~i~-v~~~~~~~~~~~  314 (454)
                        ..++++.+..|+++..++   .|.+.+|+++++|.||+|+|++|+.+++...         |.+. +|+...      
T Consensus       270 --~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~------  341 (493)
T 1y56_A          270 --WGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR------  341 (493)
T ss_dssp             --HTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE------
T ss_pred             --CCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC------
Confidence              223566667777776543   3667789999999999999999998775432         2232 233221      


Q ss_pred             ccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCCCCC
Q 044575          315 TFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLP  357 (454)
Q Consensus       315 ~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~lp  357 (454)
                           +.|++|++|++........|..||+.+|.++.+.....
T Consensus       342 -----s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg~~  379 (493)
T 1y56_A          342 -----IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEFGYD  379 (493)
T ss_dssp             -----EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             -----cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHcCCC
Confidence                 24899999999977777889999999999997765443

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.91  E-value=3.2e-26  Score=228.35  Aligned_cols=268  Identities=16%  Similarity=0.216  Sum_probs=160.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ++|||||||+||++||++|++.+  .+|+|||++++..                  |..+........+...+...+   
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~------------------~~p~l~~v~~g~~~~~~i~~~---   61 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG------------------FTPAFPHLAMGWRKFEDISVP---   61 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE------------------CGGGHHHHHHTCSCGGGSEEE---
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc------------------cCccHHHHhcCCCCHHHhhhc---
Confidence            57999999999999999999875  7999999987431                  111111111111111111111   


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                                      +.++.++.++.  + ...+|++|+..            ..+|++.++.     ++.||+|||||
T Consensus        62 ----------------~~~~~~~~gv~--~-i~~~v~~Id~~------------~~~V~~~~g~-----~i~YD~LViAt  105 (430)
T 3hyw_A           62 ----------------LAPLLPKFNIE--F-INEKAESIDPD------------ANTVTTQSGK-----KIEYDYLVIAT  105 (430)
T ss_dssp             ----------------STTTGGGGTEE--E-ECSCEEEEETT------------TTEEEETTCC-----EEECSEEEECC
T ss_pred             ----------------HHHHHHHCCcE--E-EEeEEEEEECC------------CCEEEECCCC-----EEECCEEEEeC
Confidence                            11223334544  3 35589999865            4568887765     78999999999


Q ss_pred             CCCCCCCCCCCCCcCCccceeE---EeecCCC--CCCCCCCeEEEEcCCC------CHHHHHHHHh----hh----cCeE
Q 044575          171 GHYSYPRLPSIKGMDKWKRKQM---HSHIYRV--PEPFRNEVVVVVGNSL------SGQDISMELV----EV----AKEV  231 (454)
Q Consensus       171 G~~~~p~~p~i~G~~~~~~~~~---~~~~~~~--~~~~~~k~vvVVG~G~------sg~e~A~~l~----~~----~~~V  231 (454)
                      |  +.+. +++||.++......   +....+.  .+...++.++|+|++.      .+.|+|..+.    +.    ..+|
T Consensus       106 G--~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v  182 (430)
T 3hyw_A          106 G--PKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPM  182 (430)
T ss_dssp             C--CEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCE
T ss_pred             C--CCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhccccccee
Confidence            9  6654 45788654211100   0000000  0011234556666553      1234444433    22    2468


Q ss_pred             EEecccCCcCc-------c----chhhhcc-CCCeEEcCceeEEecCCcEEEeC--C--CEEeeceEEEccCcccCCcCC
Q 044575          232 HLSAKSLNISE-------G----LSKVISK-HNNLHLHPQIDCLREDGRVTFVD--G--CWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       232 ~l~~r~~~~~~-------~----~~~~l~~-~~~i~~~~~v~~v~~~~~v~~~d--G--~~i~~D~vI~atG~~~~~~~l  295 (454)
                      +++...+.+.+       .    +.+.+.+ .++++.+..|++++.++ +++.+  |  +++++|.+|+++|.+|+ +++
T Consensus       183 ~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~-~~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~  260 (430)
T 3hyw_A          183 TFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK-VIYEDLNGNTHEVPAKFTMFMPSFQGP-EVV  260 (430)
T ss_dssp             EEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-EEEECTTSCEEEEECSEEEEECEEECC-HHH
T ss_pred             eeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc-eEEEeeCCCceEeecceEEEeccCCCc-hHH
Confidence            88887665421       1    2223333 35888999999997664 66664  3  36889999999999987 332


Q ss_pred             C---------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-------------chhHHHHHHHHHHHHHc
Q 044575          296 D---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-------------GFPFFESQAKWIAQLLS  351 (454)
Q Consensus       296 ~---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~a~~qa~~~a~~i~  351 (454)
                      .         .++.+.+|++++.         +++|++|++||+...+             +.+.|..||+++|++|.
T Consensus       261 ~~~~~~l~~~~~g~i~vd~~lq~---------t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~  329 (430)
T 3hyw_A          261 ASAGDKVANPANKMVIVNRCFQN---------PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV  329 (430)
T ss_dssp             HTTCTTTBCTTTCCBCCCTTSBC---------SSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcccccccCCceEEEecccccC---------CCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHH
Confidence            1         2345566655442         3568999999987532             22489999999998875

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.58  E-value=9.4e-16  Score=150.85  Aligned_cols=149  Identities=23%  Similarity=0.345  Sum_probs=90.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccc-ccceecCCcc------------c
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVY-ASLRLTSPRE------------I   78 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~   78 (454)
                      .+||+|||||++|+++|..|++.|.+|+|||+++.+|+.|...+.......+.... .......+..            .
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence            47999999999999999999999999999999988866543221100000000000 0000000000            0


Q ss_pred             cc---cCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           79 MG---YTDFPFVLKKGRDVRRFP--GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                      +.   -.+.++...  .....|+  ...++.+++.+.+++.++.  ++++++|+++...+++     ..+ .|.|++.++
T Consensus        84 ~~~~~~~Gi~~~~~--~~g~~~p~~~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g-----~~~-~~~v~~~~g  153 (401)
T 2gqf_A           84 ISLVAEQGITYHEK--ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQND-----EKV-RFVLQVNST  153 (401)
T ss_dssp             HHHHHHTTCCEEEC--STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSC-----SSC-CEEEEETTE
T ss_pred             HHHHHhCCCceEEC--cCCEEccCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCc-----CCC-eEEEEECCC
Confidence            00   001111110  0112233  5688899999999999987  9999999999865210     001 677765432


Q ss_pred             CCCeEEEEEeCEEEEccCCCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                            ++.+|+||+|||.++.|
T Consensus       154 ------~i~ad~VVlAtG~~s~p  170 (401)
T 2gqf_A          154 ------QWQCKNLIVATGGLSMP  170 (401)
T ss_dssp             ------EEEESEEEECCCCSSCG
T ss_pred             ------EEECCEEEECCCCccCC
Confidence                  68999999999965544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.51  E-value=3e-14  Score=124.17  Aligned_cols=133  Identities=19%  Similarity=0.256  Sum_probs=100.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC---------ccc---------hh----hhcc-CCCeEEcCceeEE
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS---------EGL---------SK----VISK-HNNLHLHPQIDCL  263 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~---------~~~---------~~----~l~~-~~~i~~~~~v~~v  263 (454)
                      +|+|||+|++|+++|..|++.+.+|+++++.+.+.         +.+         .+    .+.+ ..+++.+ .|+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            69999999999999999999999999999876443         112         11    1222 2467777 88888


Q ss_pred             ecCC---cEEEeCCCEEeeceEEEccCcccCCc-C----CCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-
Q 044575          264 REDG---RVTFVDGCWVTADTILYCTGYSYSFP-F----LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-  334 (454)
Q Consensus       264 ~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~-~----l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-  334 (454)
                      ..++   .|.+.+| ++++|.||+|+|..|++. .    ++ +|.+.+|+...          ++.|++|++||+...+ 
T Consensus        82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~~~~-~g~i~vd~~~~----------t~~~~i~a~GD~~~~~~  149 (180)
T 2ywl_A           82 RDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGLTRR-GAYIDTDEGGR----------TSYPRVYAAGVARGKVP  149 (180)
T ss_dssp             EECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTCCEE-TTEECCCTTCB----------CSSTTEEECGGGGTCCS
T ss_pred             EEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCCCcc-CceEEeCCCCC----------cCCCCEEEeecccCcch
Confidence            7533   4666677 899999999999998641 1    23 56676776554          4569999999998764 


Q ss_pred             -chhHHHHHHHHHHHHHcC
Q 044575          335 -GFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       335 -~~~~a~~qa~~~a~~i~g  352 (454)
                       ..+.|..||+.+|.++.+
T Consensus       150 ~~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          150 GHAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHHHH
Confidence             557899999999988864

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.45  E-value=5e-15  Score=148.88  Aligned_cols=307  Identities=15%  Similarity=0.099  Sum_probs=155.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC-----CC-CCCCccccccccce---------------e
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP-----NT-DQTEVHSSVYASLR---------------L   72 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~-----~~-~~~~~~~~~~~~~~---------------~   72 (454)
                      ||+|||||++|+++|..|++.|.+|+|+||. ..||.-.+..     +. +.+.......+.+.               .
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999998 5555421110     00 00000000000000               0


Q ss_pred             cCCcccccc--CCCCCCCC----CCCCCC-----CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCC
Q 044575           73 TSPREIMGY--TDFPFVLK----KGRDVR-----RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGN  141 (454)
Q Consensus        73 ~~~~~~~~~--~~~~~~~~----~~~~~~-----~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~  141 (454)
                      +.+..+..+  .+.++...    .+...+     .-....++...+.+.+++.++.  +.++++| ++...++.      
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~~~------  150 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKDGK------  150 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEETTE------
T ss_pred             HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeCCE------
Confidence            000000000  01222110    000000     0123567778888777778887  8899999 98765321      


Q ss_pred             cCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCC-CcCCccceeEEee-----cCCCCCCCCCC-eEEEEcCC
Q 044575          142 DLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIK-GMDKWKRKQMHSH-----IYRVPEPFRNE-VVVVVGNS  214 (454)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~-G~~~~~~~~~~~~-----~~~~~~~~~~k-~vvVVG~G  214 (454)
                         -.-+.+.+.+ +   ++.+|.||+|||  ..+..+.++ +.....+..+...     ...+.+..+.. +++++|+|
T Consensus       151 ---v~Gv~v~~~~-g---~~~a~~VVlAtG--g~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg  221 (472)
T 2e5v_A          151 ---VTGFVTEKRG-L---VEDVDKLVLATG--GYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE  221 (472)
T ss_dssp             ---EEEEEETTTE-E---ECCCSEEEECCC--CCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC
T ss_pred             ---EEEEEEEeCC-C---eEEeeeEEECCC--CCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC
Confidence               1123332211 1   466999999999  555444332 1111222211100     01111211112 34556766


Q ss_pred             CCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCC-CeEEcCceeEEecCCcEEEeCC------CEEe-eceEEEcc
Q 044575          215 LSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLHLHPQIDCLREDGRVTFVDG------CWVT-ADTILYCT  286 (454)
Q Consensus       215 ~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~-~i~~~~~v~~v~~~~~v~~~dG------~~i~-~D~vI~at  286 (454)
                        +++++..+...|..+ +..+.+++.+.+.+...... .+....-..++...+.|.+...      +.++ .|.++.++
T Consensus       222 --~~~~ae~~~~~G~~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~  298 (472)
T 2e5v_A          222 --VFLLTETLRGEGAQI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLSKIEDFERKFPVVAKYLARH  298 (472)
T ss_dssp             --CEECCTHHHHTTCEE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCCEEEECTTCTTHHHHCHHHHHHHHHT
T ss_pred             --ceeeehhhcCCceEE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCcEEEeccchHHHHHHhHHHHHHHHHh
Confidence              889888888888877 67777776543322110000 0000000000001111222111      1233 57788889


Q ss_pred             CcccCCcCCC-------CCCceeeCCCCcccccCcccCCCCCCCceEeccccc-cc-----chhHHH----HHHHHHHHH
Q 044575          287 GYSYSFPFLD-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK-LI-----GFPFFE----SQAKWIAQL  349 (454)
Q Consensus       287 G~~~~~~~l~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~-~~-----~~~~a~----~qa~~~a~~  349 (454)
                      |..|+ ..+.       ..|.|.+|.+.+          +..|+||++|++.. ..     ....+.    ..++.++++
T Consensus       299 G~dp~-~~i~v~p~~~~~~GGI~vd~~~~----------t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~  367 (472)
T 2e5v_A          299 GHNYK-VKIPIFPAAHFVDGGIRVNIRGE----------SNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRY  367 (472)
T ss_dssp             TCCTT-SCEECEEEEEEESCEEECCTTCB----------CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGT
T ss_pred             CcCcc-cceEeehhhceeCCCeEECCCCc----------cccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHH
Confidence            99998 5433       247788888766          35699999999876 32     112333    346666666


Q ss_pred             HcCC
Q 044575          350 LSGK  353 (454)
Q Consensus       350 i~g~  353 (454)
                      +++.
T Consensus       368 ~a~~  371 (472)
T 2e5v_A          368 VDSS  371 (472)
T ss_dssp             TTSC
T ss_pred             HHhh
Confidence            6554

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.39  E-value=1.7e-12  Score=128.05  Aligned_cols=149  Identities=21%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc-ccccceecCCccc---------
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS-VYASLRLTSPREI---------   78 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------   78 (454)
                      |+..+||+|||||++|++||..|++.|.+|+|||+.+.+|+.+...+.......... .........+...         
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP  103 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence            345689999999999999999999999999999999988765532211100000000 0000000001000         


Q ss_pred             ---ccc---CCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           79 ---MGY---TDFPFVLKKGRDVRRF--PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        79 ---~~~---~~~~~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                         ..+   .+.++...  .....|  ....++.+.+.+.+++.++.  ++++++|++|...++          .|.|.+
T Consensus       104 ~~~~~~~~~~Gi~~~~~--~~g~~~~~~~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~~----------~~~V~~  169 (417)
T 3v76_A          104 QDFVALVERHGIGWHEK--TLGQLFCDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTAS----------GFRVTT  169 (417)
T ss_dssp             HHHHHHHHHTTCCEEEC--STTEEEESSCHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEETT----------EEEEEE
T ss_pred             HHHHHHHHHcCCCcEEe--eCCEEeeCCCHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCC----------EEEEEE
Confidence               000   01111110  011112  24568899999999988987  999999999987643          677776


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYPR  177 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p~  177 (454)
                      .++      ++.+|+||+|||.++.|.
T Consensus       170 ~~g------~i~ad~VIlAtG~~S~p~  190 (417)
T 3v76_A          170 SAG------TVDAASLVVASGGKSIPK  190 (417)
T ss_dssp             TTE------EEEESEEEECCCCSSCGG
T ss_pred             CCc------EEEeeEEEECCCCccCCC
Confidence            543      689999999999766544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.32  E-value=3.9e-12  Score=110.62  Aligned_cols=118  Identities=29%  Similarity=0.402  Sum_probs=84.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      +||+|||||++|+.+|..|++.|.+|+++|+.+..   +...                     ..+..++++        
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~---~~~~---------------------~~~~~~~~~--------   49 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK---VKGV---------------------SRVPNYPGL--------   49 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT---TTTC---------------------SCCCCSTTC--------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc---ccCc---------------------hhhhccCCC--------
Confidence            68999999999999999999999999999997632   1000                     000011111        


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                        +......++.+++.+.+++.++.  ++++ +|++++..++          .|.|++.++      ++.+|.||+|+| 
T Consensus        50 --~~~~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~~----------~~~v~~~~g------~i~ad~vI~A~G-  107 (180)
T 2ywl_A           50 --LDEPSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMGG----------VFEVETEEG------VEKAERLLLCTH-  107 (180)
T ss_dssp             --TTCCCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECSS----------SEEEECSSC------EEEEEEEEECCT-
T ss_pred             --cCCCCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcCC----------EEEEEECCC------EEEECEEEECCC-
Confidence              11235688999999999999987  8888 9999987543          677766432      689999999999 


Q ss_pred             CCCCCCCCCCCcC
Q 044575          173 YSYPRLPSIKGMD  185 (454)
Q Consensus       173 ~~~p~~p~i~G~~  185 (454)
                       ..|+++...|++
T Consensus       108 -~~~~~~~~~g~~  119 (180)
T 2ywl_A          108 -KDPTLPSLLGLT  119 (180)
T ss_dssp             -TCCHHHHHHTCC
T ss_pred             -CCCCccccCCCC
Confidence             666554333443

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.28  E-value=9.1e-12  Score=127.41  Aligned_cols=182  Identities=15%  Similarity=0.114  Sum_probs=102.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCcccccCCCCCCCC-ccc-cccccceecCCc--------ccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGGQWLYDPNTDQTE-VHS-SVYASLRLTSPR--------EIM   79 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG~w~~~~~~~~~~-~~~-~~~~~~~~~~~~--------~~~   79 (454)
                      ..+||+|||||+||++||..|++.|.+|+|||++. .+|.    .+|.++.- ... .....+.. ...        ...
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~----~~Cnps~ggia~~~lv~ei~a-lgg~~~~~~d~~gi  101 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ----MSCNPAIGGIGKGHLVKEVDA-LGGLMAKAIDQAGI  101 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CSSSSEEESTTHHHHHHHHHH-TTCSHHHHHHHHEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccc----ccccccccchhhHHHHHHHHH-hccHHHHHhhhccc
Confidence            45899999999999999999999999999999974 3442    12222110 000 00000000 000        000


Q ss_pred             ccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           80 GYTDFPFVLKKGRD-VRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                      .|............ ......+..+...+.+.+++ .++.  + ++++|+.+...++.         -+.|.+.++.   
T Consensus       102 ~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~---------V~GV~t~dG~---  166 (651)
T 3ces_A          102 QFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDR---------VVGAVTQMGL---  166 (651)
T ss_dssp             EEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSB---------EEEEEETTSE---
T ss_pred             chhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCE---------EEEEEECCCC---
Confidence            00000000000000 00112446777888888876 4665  5 67899998765432         3456665432   


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                        ++.+|.||+|||  +.+..+.++|...+.                +.+   +| |.+|+++|..|.+.|.+|+.+..
T Consensus       167 --~I~Ad~VVLATG--t~s~~~~i~G~~~~~----------------~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          167 --KFRAKAVVLTVG--TFLDGKIHIGLDNYS----------------GGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             --EEEEEEEEECCS--TTTCCEEECC---------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred             --EEECCEEEEcCC--CCccCccccCcccCC----------------CCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence              689999999999  666666666765321                123   56 78999999999999999988753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.25  E-value=3.8e-11  Score=108.91  Aligned_cols=124  Identities=21%  Similarity=0.072  Sum_probs=80.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .+||+|||||++|+++|..|++.|.+|+|||+.....|.|. .+.....     ....+.       ..+.+    .   
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~-~~~~~~~-----~~~~~~-------~~~~d----~---   62 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPF-LPPKPPF-----PPGSLL-------ERAYD----P---   62 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS-SCCCSCC-----CTTCHH-------HHHCC----T---
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCccc-Ccccccc-----chhhHH-------hhhcc----C---
Confidence            47999999999999999999999999999999844334321 1110000     000000       00000    0   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                       .   -+.+.++..++.+.+++. ++.  ++ +++|+++...++.         -+.|.+.++.     ++.+|+||+||
T Consensus        63 -~---g~~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~~~---------v~~v~~~~g~-----~i~a~~VV~A~  121 (232)
T 2cul_A           63 -K---DERVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEGNR---------VVGVRTWEGP-----PARGEKVVLAV  121 (232)
T ss_dssp             -T---CCCHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEETTE---------EEEEEETTSC-----CEECSEEEECC
T ss_pred             -C---CCCHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeCCE---------EEEEEECCCC-----EEECCEEEECC
Confidence             0   115678888998888876 765  55 6789999875432         3556665543     68999999999


Q ss_pred             CCCCCC
Q 044575          171 GHYSYP  176 (454)
Q Consensus       171 G~~~~p  176 (454)
                      |.++..
T Consensus       122 G~~s~~  127 (232)
T 2cul_A          122 GSFLGA  127 (232)
T ss_dssp             TTCSSC
T ss_pred             CCChhh
Confidence            954433

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.24  E-value=2.5e-11  Score=118.78  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=87.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCC-----------CCccccccccceecCCccccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQ-----------TEVHSSVYASLRLTSPREIMG   80 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .|||+||||||||+++|..|++.|++|+||||++.+|.........+.           ...........+...+.....
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP   83 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence            589999999999999999999999999999998877542111100000           000000011111111111100


Q ss_pred             cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575           81 YTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE  160 (454)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (454)
                      .. ++... .+........+..+...|.+.+.+.+..  ++++++|+.+...++.         ...+....  ++...+
T Consensus        84 ~~-~~~~~-~~~~~~~~i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~~~---------~~~v~~~~--~~~~~~  148 (397)
T 3oz2_A           84 II-LQSEK-AGNEVGYVLERDKFDKHLAALAAKAGAD--VWVKSPALGVIKENGK---------VAGAKIRH--NNEIVD  148 (397)
T ss_dssp             EE-EECSS-SSCCCEEEECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEETTE---------EEEEEEEE--TTEEEE
T ss_pred             ee-ccccc-cCCceeEEEEHHHHHHHHHHHHHhcCcE--Eeeeeeeeeeeeccce---------eeeeeecc--cccceE
Confidence            00 00000 0001111246788889999999988887  8999999998876532         22222222  244557


Q ss_pred             EEeCEEEEccCCCC
Q 044575          161 EVFDAVVVATGHYS  174 (454)
Q Consensus       161 ~~~d~vViAtG~~~  174 (454)
                      +++|.||.|.|.+|
T Consensus       149 ~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          149 VRAKMVIAADGFES  162 (397)
T ss_dssp             EEEEEEEECCCTTC
T ss_pred             EEEeEEEeCCcccc
Confidence            89999999999544

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.24  E-value=1.5e-11  Score=122.93  Aligned_cols=147  Identities=24%  Similarity=0.303  Sum_probs=89.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccccc---------------ceecCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS---------------LRLTSPR   76 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~---------------~~~~~~~   76 (454)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.....+...........+..               +....+.
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            4799999999999999999999999999999998887543322110000000000000               0000000


Q ss_pred             ccccc---CCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           77 EIMGY---TDFPFVLKKGRDVRRFP---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        77 ~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      ....+   .+.++....  ....|+   ....+.+.|.+.+++.++.  ++++++|+++...++.         .|.|++
T Consensus       106 ~~~~~~~~~G~~~~~~~--~g~~~p~~~~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~~~---------v~~V~~  172 (447)
T 2i0z_A          106 DIITFFENLGVKLKEED--HGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQ---------TKAVIL  172 (447)
T ss_dssp             HHHHHHHHTTCCEEECG--GGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTE---------EEEEEE
T ss_pred             HHHHHHHhcCCceEEee--CCEEECCCCCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecCCc---------EEEEEE
Confidence            00000   011111100  011122   4678888999888888887  9999999999875431         377877


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                      .++.     ++.+|.||+|||.++.|
T Consensus       173 ~~G~-----~i~Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          173 QTGE-----VLETNHVVIAVGGKSVP  193 (447)
T ss_dssp             TTCC-----EEECSCEEECCCCSSSG
T ss_pred             CCCC-----EEECCEEEECCCCCcCC
Confidence            6543     58999999999976643

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=118.87  Aligned_cols=143  Identities=19%  Similarity=0.245  Sum_probs=85.5

Q ss_pred             CcEEEECcChHHHHHHHHHHH---cCCcEEEEeeCCCCCcccccCCCCCC--C-Cccccccccceec----C--------
Q 044575           13 KNVCVIGAGPSGLVAARELRK---EGHRVVVLEQNHDVGGQWLYDPNTDQ--T-EVHSSVYASLRLT----S--------   74 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~---~g~~v~vie~~~~~GG~w~~~~~~~~--~-~~~~~~~~~~~~~----~--------   74 (454)
                      +||+|||||++|+++|..|++   .|++|+||||++.+||.|........  . .-....|......    .        
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            589999999999999999999   89999999999999998764321000  0 0000000000000    0        


Q ss_pred             -CccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           75 -PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                       ......+...............|.....+..+++.++++.+..  |+++++|++|+..++          .|+|++.++
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~~----------~~~v~~~~g  149 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRDD----------KWEVSKQTG  149 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECSS----------SEEEEESSS
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcCC----------EEEEEECCC
Confidence             0000000000000000001112233334556677777777766  999999999998643          799888765


Q ss_pred             CCCeEEEEEeCEEEEccCC
Q 044575          154 KADKVVEEVFDAVVVATGH  172 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~  172 (454)
                      .     ++.||+||+|+..
T Consensus       150 ~-----~~~ad~vV~A~p~  163 (342)
T 3qj4_A          150 S-----PEQFDLIVLTMPV  163 (342)
T ss_dssp             C-----CEEESEEEECSCH
T ss_pred             C-----EEEcCEEEECCCH
Confidence            4     5789999999983

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.19  E-value=9.7e-11  Score=109.62  Aligned_cols=142  Identities=15%  Similarity=0.084  Sum_probs=83.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCC-ccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSP-REIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   88 (454)
                      ..+||+|||||++|+++|..|++. |.+|+|||+.+.+||..........         .+....+ ...+.--+.++..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~---------~~~~~~~~~~~l~~~G~~~~~  108 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFS---------AMIVRKPAHLFLDEIGVAYDE  108 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCC---------CEEEETTTHHHHHHHTCCCEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchH---------HHHcCcHHHHHHHHcCCCccc
Confidence            457999999999999999999997 9999999999988764322221111         0000000 0000001222221


Q ss_pred             CCCCCCCCC--CCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee---------cCCC
Q 044575           89 KKGRDVRRF--PGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE---------KKAD  156 (454)
Q Consensus        89 ~~~~~~~~~--~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~---------~~~~  156 (454)
                          ....+  ....++...+.+.+.+ .++.  ++++++|+++...++.         -..|.+..         +..+
T Consensus       109 ----~~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~~~---------v~gv~~~~~~~~~~~~~g~~g  173 (284)
T 1rp0_A          109 ----QDTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNR---------VGGVVTNWALVAQNHHTQSCM  173 (284)
T ss_dssp             ----CSSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEETTE---------EEEEEEEEHHHHTCTTTSSCC
T ss_pred             ----CCCEEEecCHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecCCe---------EEEEEEeccccccccCccccC
Confidence                10011  1445666666655544 4666  8899999999865431         22344431         1112


Q ss_pred             eEEEEEeCEEEEccCCCCCCCC
Q 044575          157 KVVEEVFDAVVVATGHYSYPRL  178 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~~p~~  178 (454)
                      ...++.+|.||+|+|  ..+.+
T Consensus       174 ~~~~i~ad~VV~AtG--~~s~~  193 (284)
T 1rp0_A          174 DPNVMEAKIVVSSCG--HDGPF  193 (284)
T ss_dssp             CCEEEEEEEEEECCC--SSSTT
T ss_pred             ceEEEECCEEEECCC--CchHH
Confidence            234789999999999  44444

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.19  E-value=5.7e-11  Score=121.09  Aligned_cols=182  Identities=18%  Similarity=0.134  Sum_probs=107.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCcccccCCCCCCCC-cc-ccccccceecCCc--------ccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGGQWLYDPNTDQTE-VH-SSVYASLRLTSPR--------EIM   79 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG~w~~~~~~~~~~-~~-~~~~~~~~~~~~~--------~~~   79 (454)
                      ..+||+|||||+||++||..|++.|.+|+|||++. .+|+    .+|.++.- .. ......+.. ...        ...
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~----~~Cnps~GGia~g~lv~elda-lgg~~~~~~d~~gi  100 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ----MSCNPAIGGIAKGIVVREIDA-LGGEMGKAIDQTGI  100 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CCSCSEEECTTHHHHHHHHHH-HTCSHHHHHHHHEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC----cCccccccccchHHHHHHHHH-hhhHHHHHhhhccc
Confidence            35899999999999999999999999999999974 4553    12222210 00 000000000 000        000


Q ss_pred             ccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           80 GYTDFPFVLKKGRD-VRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                      .|............ ......+..+...+.+.++++ ++.  + ++++|+++...++.         -+.|.+.++.   
T Consensus       101 ~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~g~---------V~GV~t~dG~---  165 (637)
T 2zxi_A          101 QFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKNNQ---------VVGVRTNLGV---  165 (637)
T ss_dssp             EEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESSSB---------EEEEEETTSC---
T ss_pred             ceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecCCE---------EEEEEECCCc---
Confidence            00000000000000 000124567888888888763 665  5 67899998765432         3446665543   


Q ss_pred             EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                        ++.+|.||+|||  ..++.+.++|...+.               .++    +| +.++.++|..|.+.|.+|..+.+
T Consensus       166 --~i~AdaVVLATG--~~s~~~~~~G~~~~~---------------~Gr----~G-~~~A~~la~~L~~lG~~v~~l~t  220 (637)
T 2zxi_A          166 --EYKTKAVVVTTG--TFLNGVIYIGDKMIP---------------GGR----LG-EPRSEGLSDFYRRFDFPLIRFKT  220 (637)
T ss_dssp             --EEECSEEEECCT--TCBTCEEEETTEEEE---------------CSB----TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred             --EEEeCEEEEccC--CCccCceeccceecC---------------CCC----CC-chhHHHHHHHHHhcCCceEEecC
Confidence              789999999999  666666666654321               122    23 67889999999999988776654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.19  E-value=8.5e-11  Score=120.59  Aligned_cols=149  Identities=18%  Similarity=0.105  Sum_probs=86.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-cccccccceecCCccccc-cCCC---
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLRLTSPREIMG-YTDF---   84 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-~~~~---   84 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+.+..+....-....+..  .+ ....++.+.......... |.+.   
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  128 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ  128 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence            5799999999999999999999999999999987653110000000000  00 000000000000000000 1111   


Q ss_pred             --CCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE
Q 044575           85 --PFVLKK-GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE  161 (454)
Q Consensus        85 --~~~~~~-~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (454)
                        .+.... .........+..+.+.|.+.+.+.++.  ++++++|++++..++          .++|++...+ + ..++
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~~----------~v~v~~~~~~-G-~~~~  194 (570)
T 3fmw_A          129 GLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDAE----------AVEVTVAGPS-G-PYPV  194 (570)
T ss_dssp             CCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCSS----------CEEEEEEETT-E-EEEE
T ss_pred             cccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------eEEEEEEeCC-C-cEEE
Confidence              111000 001123367888999999999888877  889999999986543          6777775322 1 1478


Q ss_pred             EeCEEEEccCCCC
Q 044575          162 VFDAVVVATGHYS  174 (454)
Q Consensus       162 ~~d~vViAtG~~~  174 (454)
                      ++|+||.|+|.+|
T Consensus       195 ~a~~vV~ADG~~S  207 (570)
T 3fmw_A          195 RARYGVGCDGGRS  207 (570)
T ss_dssp             EESEEEECSCSSC
T ss_pred             EeCEEEEcCCCCc
Confidence            9999999999654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.17  E-value=1.6e-10  Score=117.23  Aligned_cols=147  Identities=22%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC-------CcccccCCCCCCCCccc-----ccccc--ceecCC--
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-------GGQWLYDPNTDQTEVHS-----SVYAS--LRLTSP--   75 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~-------GG~w~~~~~~~~~~~~~-----~~~~~--~~~~~~--   75 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+       ++.|....+.+......     ..+..  +.....  
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            479999999999999999999999999999998776       34565544333210000     00000  000000  


Q ss_pred             ----cccc-ccCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE
Q 044575           76 ----REIM-GYTDFPFVLKKGRDVRRFP---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV  147 (454)
Q Consensus        76 ----~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~  147 (454)
                          ...+ .+..+..+...........   ...++.+.+.+.+++.++.  ++++++|+++...++.         .+.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~---------v~g  255 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQ---------ITG  255 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSB---------EEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCE---------EEE
Confidence                0000 0000111100000000111   1356778888888888887  9999999999876532         455


Q ss_pred             EEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          148 VKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       148 v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      |++.++.     ++.+|.||+|+|+.+
T Consensus       256 V~l~~G~-----~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          256 VTLSNGE-----EIKSRHVVLAVGHSA  277 (549)
T ss_dssp             EEETTSC-----EEECSCEEECCCTTC
T ss_pred             EEECCCC-----EEECCEEEECCCCCh
Confidence            7776654     789999999999644

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.16  E-value=2.6e-10  Score=115.37  Aligned_cols=153  Identities=20%  Similarity=0.160  Sum_probs=91.4

Q ss_pred             hccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-cccccccceecCCccccccCCC
Q 044575            8 QCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLRLTSPREIMGYTDF   84 (454)
Q Consensus         8 ~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~   84 (454)
                      +++..+||+||||||+|+++|..|++.|++|+|||+.+.++..-.-....+..  .+ ...+++.+....+.....+.+.
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   86 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL   86 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence            34567899999999999999999999999999999987653210000000000  00 0001111110000000111111


Q ss_pred             CCCCCC-CC--CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE
Q 044575           85 PFVLKK-GR--DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE  161 (454)
Q Consensus        85 ~~~~~~-~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (454)
                      .+.... ..  ......++..+.+.|.+.+.+.++.  ++++++|++++..++          .++|++.++. + ..++
T Consensus        87 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v~v~~~~~~-g-~~~~  152 (500)
T 2qa1_A           87 PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDGA----------GVTVEVRGPE-G-KHTL  152 (500)
T ss_dssp             EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEETT----------EEEEEEEETT-E-EEEE
T ss_pred             ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcCC----------eEEEEEEcCC-C-CEEE
Confidence            110000 00  0112245678899999999988877  999999999987653          6778877653 2 3578


Q ss_pred             EeCEEEEccCCCC
Q 044575          162 VFDAVVVATGHYS  174 (454)
Q Consensus       162 ~~d~vViAtG~~~  174 (454)
                      ++|+||.|.|.+|
T Consensus       153 ~a~~vVgADG~~S  165 (500)
T 2qa1_A          153 RAAYLVGCDGGRS  165 (500)
T ss_dssp             EESEEEECCCTTC
T ss_pred             EeCEEEECCCcch
Confidence            9999999999655

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.15  E-value=1.4e-10  Score=114.81  Aligned_cols=147  Identities=20%  Similarity=0.260  Sum_probs=86.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccCCCCCCCCccccccc-----------cceecCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYDPNTDQTEVHSSVYA-----------SLRLTSPR   76 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~~~~~~~~~~~~~~~-----------~~~~~~~~   76 (454)
                      .+||+|||||++|+++|..|++.|.+|+|+|+.+..    |.... ..+... .-....+.           ........
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~-~~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~~~   82 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLL-PRCMEH-LDEAGFLDAVKAQGFQQKFGAKFVRGK   82 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCC-GGGHHH-HHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCccc-HhHHHH-HHHcCChHHHHHcCCcccCCcEEEeCC
Confidence            479999999999999999999999999999998632    22111 000000 00000000           00000000


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575           77 EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD  156 (454)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (454)
                      ....+ ++...............+..+...|.+.+.+.++.  ++++++|++++..++          .+.+.+...+ +
T Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~----------~~~v~v~~~~-g  148 (421)
T 3nix_A           83 EIADF-NFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFGT----------DSVTTIEDIN-G  148 (421)
T ss_dssp             EEEEE-ETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETT----------EEEEEEEETT-S
T ss_pred             eeEEE-eehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCC----------EEEEEEEcCC-C
Confidence            00000 01000000001122356788999999999888887  999999999987643          4555554332 3


Q ss_pred             eEEEEEeCEEEEccCCCC
Q 044575          157 KVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~  174 (454)
                      ...++.+|.||.|+|.++
T Consensus       149 ~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          149 NKREIEARFIIDASGYGR  166 (421)
T ss_dssp             CEEEEEEEEEEECCGGGC
T ss_pred             CEEEEEcCEEEECCCCch
Confidence            445789999999999543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.15  E-value=5.1e-11  Score=117.52  Aligned_cols=146  Identities=19%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCCCCC-----CC---c--cccccccceecCC-
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPNTDQ-----TE---V--HSSVYASLRLTSP-   75 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~~~~-----~~---~--~~~~~~~~~~~~~-   75 (454)
                      .+.+||+|||||++|+++|..|++.|++|+|||+.+.++.   .+...+..-.     ..   +  ............. 
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~  100 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFR  100 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECC
Confidence            4568999999999999999999999999999999876531   1110000000     00   0  0000000000000 


Q ss_pred             --ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           76 --REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                        .....+....+... .........+..+.+.|.+.+.+  .  .++++++|++++..++          .++|++.++
T Consensus       101 ~g~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~----------~v~v~~~~g  165 (407)
T 3rp8_A          101 SGENMTQFSLAPLIER-TGSRPCPVSRAELQREMLDYWGR--D--SVQFGKRVTRCEEDAD----------GVTVWFTDG  165 (407)
T ss_dssp             TCCEEEEEECHHHHHH-HSSCCEEEEHHHHHHHHHHHHCG--G--GEEESCCEEEEEEETT----------EEEEEETTS
T ss_pred             CCCEeEEecchhhhhh-cCCceEEEEHHHHHHHHHHhCCc--C--EEEECCEEEEEEecCC----------cEEEEEcCC
Confidence              00000000000000 00111224567888888887765  3  3899999999987653          688888766


Q ss_pred             CCCeEEEEEeCEEEEccCCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      .     ++.+|.||.|+|.+|.
T Consensus       166 ~-----~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          166 S-----SASGDLLIAADGSHSA  182 (407)
T ss_dssp             C-----EEEESEEEECCCTTCS
T ss_pred             C-----EEeeCEEEECCCcChH
Confidence            4     7899999999996543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.14  E-value=6.3e-11  Score=119.76  Aligned_cols=140  Identities=21%  Similarity=0.246  Sum_probs=87.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcccc-ccCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIM-GYTDFPFVLK   89 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (454)
                      ..+||+|||||++|+++|..|++.|.+|+|||+++.+|+..... ..+      .....+. ..  ... ....+..   
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~-~~~------~~~~~l~-~~--g~~~~~~~~~~---  157 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH-LWP------FTIHDLR-AL--GAKKFYGRFCT---  157 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEE-CCH------HHHHHHH-TT--THHHHCTTTTC---
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCccc-CCh------hHHHHHH-Hc--CCccccccccc---
Confidence            46899999999999999999999999999999998876532110 000      0000000 00  000 0000100   


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         ......+..++.+++.+.+++.++.  ++++++|+++...+..      .. .|.|++.+..++...++.+|+||+|
T Consensus       158 ---~~~~~~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~------~~-~~~v~~~~~~~g~~~~i~ad~VV~A  225 (497)
T 2bry_A          158 ---GTLDHISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRK------GS-GWRAQLQPNPPAQLASYEFDVLISA  225 (497)
T ss_dssp             ---TTCCEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCST------TC-CBEEEEESCCCHHHHTCCBSEEEEC
T ss_pred             ---cccccCCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCC------CC-EEEEEEEECCCCCEEEEEcCEEEEC
Confidence               0111234578889999999888887  9999999999864211      01 6788774220111125789999999


Q ss_pred             cCCCCC
Q 044575          170 TGHYSY  175 (454)
Q Consensus       170 tG~~~~  175 (454)
                      +|..+.
T Consensus       226 ~G~~S~  231 (497)
T 2bry_A          226 AGGKFV  231 (497)
T ss_dssp             CCTTCC
T ss_pred             CCCCcc
Confidence            995443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.13  E-value=1.6e-10  Score=116.79  Aligned_cols=151  Identities=21%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-cccccccceecCCccccccCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLRLTSPREIMGYTDFPF   86 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~   86 (454)
                      +..+||+||||||+|+++|..|++.|.+|+|||+.+.++..-.-....+..  .+ ...+++.+....+.....+.+..+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   89 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPV   89 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceec
Confidence            456899999999999999999999999999999987653210000000000  00 000011110000000011111111


Q ss_pred             CCC--C-CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEe
Q 044575           87 VLK--K-GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVF  163 (454)
Q Consensus        87 ~~~--~-~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (454)
                      ...  . ........++..+.+.|.+.+.+.++.  ++++++|++++..++          .++|++.++. + ..++++
T Consensus        90 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v~v~~~~~~-g-~~~~~a  155 (499)
T 2qa2_A           90 DFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEGD----------HVVVEVEGPD-G-PRSLTT  155 (499)
T ss_dssp             EGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECSS----------CEEEEEECSS-C-EEEEEE
T ss_pred             ccccCCCCCCceEecCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCC----------EEEEEEEcCC-C-cEEEEe
Confidence            000  0 000112245788999999999888877  999999999987653          6778877654 3 357899


Q ss_pred             CEEEEccCCCC
Q 044575          164 DAVVVATGHYS  174 (454)
Q Consensus       164 d~vViAtG~~~  174 (454)
                      |+||.|.|.+|
T Consensus       156 ~~vVgADG~~S  166 (499)
T 2qa2_A          156 RYVVGCDGGRS  166 (499)
T ss_dssp             EEEEECCCTTC
T ss_pred             CEEEEccCccc
Confidence            99999999655

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.13  E-value=2e-10  Score=112.10  Aligned_cols=138  Identities=17%  Similarity=0.094  Sum_probs=83.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCC--------C-CCCCCc-cccccccceecCCcc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDP--------N-TDQTEV-HSSVYASLRLTSPRE   77 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~--------~-~~~~~~-~~~~~~~~~~~~~~~   77 (454)
                      ..+||+|||||++|+++|..|++.|.+|+|||+.+.+++.   ....+        . ...... ............+..
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   89 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNK   89 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCc
Confidence            3589999999999999999999999999999998776431   00000        0 000000 000000000000000


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575           78 IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK  157 (454)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (454)
                        .+..++.+.    ......++.++.+++.+.+.+.++.  ++++++|++++.   +         . .|++.++.   
T Consensus        90 --~~~~~~~~~----~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~---~---------~-~v~~~~g~---  145 (379)
T 3alj_A           90 --SVSKETFNG----LPWRIMTRSHLHDALVNRARALGVD--ISVNSEAVAADP---V---------G-RLTLQTGE---  145 (379)
T ss_dssp             --EEEEECGGG----CCEEEEEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET---T---------T-EEEETTSC---
T ss_pred             --eeeeccCCC----CceEEECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe---C---------C-EEEECCCC---
Confidence              000001000    1112346688999999999888877  999999999975   1         6 67776543   


Q ss_pred             EEEEEeCEEEEccCCCC
Q 044575          158 VVEEVFDAVVVATGHYS  174 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~  174 (454)
                        ++.+|.||.|+|.++
T Consensus       146 --~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          146 --VLEADLIVGADGVGS  160 (379)
T ss_dssp             --EEECSEEEECCCTTC
T ss_pred             --EEEcCEEEECCCccH
Confidence              689999999999543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.12  E-value=7.5e-11  Score=115.92  Aligned_cols=142  Identities=19%  Similarity=0.143  Sum_probs=81.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccCCCCCCCCccccccccceecCCccccccC----C
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYT----D   83 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   83 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+.+..    |+.+...+..-..+-...... .....+...+.+.    +
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~g   83 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-DSISVPSSSMEYVDALTG   83 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-GGTCBCCCEEEEEETTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-ccccccccceEEEecCCC
Confidence            479999999999999999999999999999998753    211111100000000000000 0000000000000    0


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEe
Q 044575           84 FPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVF  163 (454)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (454)
                      ......  .....+..+..+.+++.+.+  .++.  ++++++|++++..++          .++|++.++.     ++.+
T Consensus        84 ~~~~~~--~~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~~~a  142 (397)
T 2vou_A           84 ERVGSV--PADWRFTSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDSE----------TVQMRFSDGT-----KAEA  142 (397)
T ss_dssp             CEEEEE--ECCCCEEEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECSS----------CEEEEETTSC-----EEEE
T ss_pred             Cccccc--cCcccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecCC----------EEEEEECCCC-----EEEC
Confidence            000000  00011234567777776654  2555  899999999987643          6888887654     6899


Q ss_pred             CEEEEccCCCCC
Q 044575          164 DAVVVATGHYSY  175 (454)
Q Consensus       164 d~vViAtG~~~~  175 (454)
                      |.||.|+|.+|.
T Consensus       143 d~vV~AdG~~S~  154 (397)
T 2vou_A          143 NWVIGADGGASV  154 (397)
T ss_dssp             SEEEECCCTTCH
T ss_pred             CEEEECCCcchh
Confidence            999999996553

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.11  E-value=2.1e-10  Score=111.14  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  ++++++|+++...+++         .|.|.+.+++   ..++.+|+||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~g~---~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          148 DSHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEG---------GFELDFGGAE---PMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTS---------SEEEEECTTS---CEEEEEEEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCc---------eEEEEECCCc---eeEEEeCEEEECCCcch
Confidence            4567888888888888887  8999999999986543         5888776542   23789999999999654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.11  E-value=2.4e-10  Score=117.54  Aligned_cols=151  Identities=20%  Similarity=0.159  Sum_probs=88.7

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Ccc-ccccccc-----------e--e
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EVH-SSVYASL-----------R--L   72 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~~-~~~~~~~-----------~--~   72 (454)
                      |+..+||+|||||++|+++|..|++.|++|+|||+.+..+... -....+..  .+. ...+..+           .  .
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~-G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   98 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRV-GESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW   98 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCC-CCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCce-eeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence            3456899999999999999999999999999999985432110 00000000  000 0000000           0  0


Q ss_pred             cCCcc--ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           73 TSPRE--IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        73 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      .....  ...+....... ..........+..+..+|.+.+.+.++.  ++++++|++|...++.         .+.|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~---------~~~V~~  166 (591)
T 3i3l_A           99 GQDQAPWTFSFAAPKVAP-WVFDHAVQVKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPD---------RVVLTV  166 (591)
T ss_dssp             SSSCCCEEEECCCC--CT-TCCSCEEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTT---------CEEEEE
T ss_pred             cCCCccceeecccccccc-cccCeeEEEcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCC---------EEEEEE
Confidence            00000  00010000000 0001112246788999999999988887  8999999999875333         688888


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .++  +...++.+|.||.|+|..+
T Consensus       167 ~~~--G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          167 RRG--GESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             EET--TEEEEEEESEEEECCGGGC
T ss_pred             ecC--CceEEEEcCEEEECCCCcc
Confidence            742  3345789999999999543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.11  E-value=1.1e-10  Score=114.67  Aligned_cols=144  Identities=22%  Similarity=0.311  Sum_probs=84.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC-----CcccccCCCCCCCCc-cccccccce---------ecCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-----GGQWLYDPNTDQTEV-HSSVYASLR---------LTSP   75 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~-----GG~w~~~~~~~~~~~-~~~~~~~~~---------~~~~   75 (454)
                      ..+||+|||||++|+++|..|++.|++|+|||+.+.+     |+.|...+......+ ...+++.+.         ....
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            4579999999999999999999999999999998754     444433211000000 000000000         0000


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           76 REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                      .... +....++.. +........+.++.++|.+.+..  .  .++++++|++++..++          .|+|++.++. 
T Consensus       105 ~g~~-~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~----------~v~v~~~~g~-  167 (398)
T 2xdo_A          105 KGNI-LSTKNVKPE-NRFDNPEINRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGKK----------KWTLTFENKP-  167 (398)
T ss_dssp             SSEE-EEECCCGGG-TTSSCCEECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECSS----------SEEEEETTSC-
T ss_pred             CCCc-hhhcccccc-CCCCCceECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECCC----------EEEEEECCCc-
Confidence            0000 000000100 00111224567777777665432  2  4899999999987643          6888887654 


Q ss_pred             CeEEEEEeCEEEEccCCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~  175 (454)
                          ++.+|.||.|+|.++.
T Consensus       168 ----~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          168 ----SETADLVILANGGMSK  183 (398)
T ss_dssp             ----CEEESEEEECSCTTCS
T ss_pred             ----EEecCEEEECCCcchh
Confidence                6899999999996554

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.11  E-value=2.4e-10  Score=112.82  Aligned_cols=151  Identities=22%  Similarity=0.202  Sum_probs=85.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCccc---ccCCCCCCCCccccccccceec-CCccccccCC---
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQW---LYDPNTDQTEVHSSVYASLRLT-SPREIMGYTD---   83 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---   83 (454)
                      .+||+|||||++|+++|..|++.|.+ |+|||+.+.++...   ...+..-..+....+++.+... .+...+.+.+   
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            47999999999999999999999999 99999987654221   1000000000000000000000 0000000000   


Q ss_pred             -----CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHH-hC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           84 -----FPFVLKKGRDV-RRFPGHKELWLYLKDFCQR-FG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        84 -----~~~~~~~~~~~-~~~~~~~~~~~yl~~~~~~-~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                           .+.....+... .....+.++.++|.+.+.+ .+ +.  ++++++|++++. ++          .++|++.+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~~----------~v~v~~~~~~~  150 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-RD----------GRVLIGARDGH  150 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-ET----------TEEEEEEEETT
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-CC----------ccEEEEecCCC
Confidence                 00000000000 1224567888898888876 45 35  899999999987 33          67788776211


Q ss_pred             CeEEEEEeCEEEEccCCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~~  175 (454)
                      +...++.+|.||.|+|.+|.
T Consensus       151 g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          151 GKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             SCEEEEEESEEEECCCTTCH
T ss_pred             CCceEEecCEEEECCCccch
Confidence            22347899999999996653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.09  E-value=2.1e-10  Score=112.78  Aligned_cols=143  Identities=22%  Similarity=0.168  Sum_probs=84.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC---cccccCCCCCCCCccccccc----------cceecCCc--
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG---GQWLYDPNTDQTEVHSSVYA----------SLRLTSPR--   76 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G---G~w~~~~~~~~~~~~~~~~~----------~~~~~~~~--   76 (454)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.+.   ......+......-....++          .+......  
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~   85 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE   85 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence            3799999999999999999999999999999987541   10100000000000000000          00000000  


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcE--EEEEeec
Q 044575           77 EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKW--VVKSKEK  153 (454)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~--~v~~~~~  153 (454)
                      ....   ++..............+.++.+.|.+.+++. ++.  ++++++|++++..++          .+  .|++.++
T Consensus        86 ~~~~---~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~----------~v~g~v~~~~g  150 (399)
T 2x3n_A           86 LLRY---FNYSSVDARGYFILMPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDER----------HAIDQVRLNDG  150 (399)
T ss_dssp             EEEE---EETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECTT----------SCEEEEEETTS
T ss_pred             EEEe---cchHHhcccCccccccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcCC----------ceEEEEEECCC
Confidence            0000   1100000001112356788889998888776 666  889999999987643          56  7777654


Q ss_pred             CCCeEEEEEeCEEEEccCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .     ++.+|.||.|+|.++
T Consensus       151 ~-----~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          151 R-----VLRPRVVVGADGIAS  166 (399)
T ss_dssp             C-----EEEEEEEEECCCTTC
T ss_pred             C-----EEECCEEEECCCCCh
Confidence            3     789999999999654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.09  E-value=4.6e-10  Score=114.73  Aligned_cols=152  Identities=20%  Similarity=0.133  Sum_probs=89.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--------C----cc-cccccc--------c
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--------E----VH-SSVYAS--------L   70 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--------~----~~-~~~~~~--------~   70 (454)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.++..-.-....+..        .    .. ......        .
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   84 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLA   84 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEE
Confidence            4799999999999999999999999999999987653110000000000        0    00 000000        0


Q ss_pred             eecCCcccccc-CCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCC
Q 044575           71 RLTSPREIMGY-TDFPF-----VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLI  144 (454)
Q Consensus        71 ~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~  144 (454)
                      .......+..+ ..++.     .. .........++..+..+|.+.+.+.++.  ++++++|++++..+++.     .. 
T Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~~-----~~-  155 (535)
T 3ihg_A           85 ESVRGEILRTVSESFDDMVAATEP-CTPAGWAMLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHDDDA-----GA-  155 (535)
T ss_dssp             SSSSSCEEEEEESCHHHHHHTTGG-GCSCCCBCCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEECGGG-----CS-
T ss_pred             eccCCceeeecccccccccccccc-CCCCcccccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCc-----cc-
Confidence            00000000000 00000     00 0001123457789999999999988877  99999999998765410     00 


Q ss_pred             cEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          145 KWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+++++.+++ + ..++++|+||.|+|.+|
T Consensus       156 ~v~v~~~~~~-~-~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          156 GVTARLAGPD-G-EYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEEEEETT-E-EEEEEEEEEEECCCTTC
T ss_pred             cEEEEEEcCC-C-eEEEEeCEEEECCCCcc
Confidence            4667776653 1 45789999999999654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.08  E-value=3.5e-10  Score=112.62  Aligned_cols=60  Identities=13%  Similarity=0.056  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCe---EEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNT---RVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~---~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  +++++   +|++|...++          +++ |++.++.     ++.+|+||+|+|.++
T Consensus       159 ~~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~~----------~v~gV~t~~G~-----~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          159 HARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFENN----------DVKGAVTADGK-----IWRAERTFLCAGASA  221 (438)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEETT----------EEEEEEETTTE-----EEECSEEEECCGGGG
T ss_pred             cHHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecCC----------eEEEEEECCCC-----EEECCEEEECCCCCh
Confidence            3467888888888888987  99999   9999987543          666 7776553     689999999999765


Q ss_pred             C
Q 044575          175 Y  175 (454)
Q Consensus       175 ~  175 (454)
                      .
T Consensus       222 ~  222 (438)
T 3dje_A          222 G  222 (438)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.06  E-value=2.5e-10  Score=116.83  Aligned_cols=183  Identities=14%  Similarity=0.146  Sum_probs=102.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCcccccCCCCCCCC-cc-ccccccceec-------CCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGGQWLYDPNTDQTE-VH-SSVYASLRLT-------SPREIM   79 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG~w~~~~~~~~~~-~~-~~~~~~~~~~-------~~~~~~   79 (454)
                      ...+||+|||||+||++||..|++.|.+|+|||++. .+|+.+    |.++.- .. ......+...       ......
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~----c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi   94 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMS----CNPAIGGVAKGQITREIDALGGEMGKAIDATGI   94 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS----SCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCc----cccchhhhhHHHHHHHHHhcccHHHHHHHhcCC
Confidence            346899999999999999999999999999999975 455532    222110 00 0000000000       000000


Q ss_pred             ccCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCC
Q 044575           80 GYTDFPFVLKKGRD-VRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKAD  156 (454)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~  156 (454)
                      .|............ ......+..+...+.+.++++ ++.  + ++.+|+.+...++          ... |.+.++.  
T Consensus        95 ~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~g----------~V~GV~t~~G~--  159 (641)
T 3cp8_A           95 QFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANSG----------KFSSVTVRSGR--  159 (641)
T ss_dssp             EEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEETT----------EEEEEEETTSC--
T ss_pred             chhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecCC----------EEEEEEECCCc--
Confidence            00000000000000 001234567788888888764 665  4 5668888876532          333 6555443  


Q ss_pred             eEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575          157 KVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA  235 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~  235 (454)
                         ++.+|.||+|||  ..++.+.++|...+.                +.+++   |+.+++++|..|.+.|.+|..+.
T Consensus       160 ---~i~Ad~VVLATG--~~s~~~i~~G~~~~~----------------~g~~v---G~~~a~~la~~L~~~G~kv~~l~  214 (641)
T 3cp8_A          160 ---AIQAKAAILACG--TFLNGLIHIGMDHFP----------------GGRST---AEPPVEGLTESLASLGFSFGRLK  214 (641)
T ss_dssp             ---EEEEEEEEECCT--TCBTCEEEETTEEEE----------------CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred             ---EEEeCEEEECcC--CCCCccceeeeeeec----------------ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence               789999999999  554433333332211                01221   46788999999999998887553

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.05  E-value=7.6e-10  Score=112.44  Aligned_cols=150  Identities=18%  Similarity=0.144  Sum_probs=85.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC----CCcccccCCCCCCCCccccccccceec-CCc-c--ccccC-
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD----VGGQWLYDPNTDQTEVHSSVYASLRLT-SPR-E--IMGYT-   82 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~----~GG~w~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~~~~-   82 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.    .|..+..... ....-...+++.+... .+. .  ...+. 
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~-~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~   85 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATV-HGICAMLGLTDEMKRAGFPIKRGGTFRWGK   85 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHH-TTHHHHTTCHHHHHTTTCCEECEEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchH-HHHHHHhCcHHHHHHcCCccccCceEEecC
Confidence            47999999999999999999999999999999862    2222110000 0000000000000000 000 0  00000 


Q ss_pred             -------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575           83 -------DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA  155 (454)
Q Consensus        83 -------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~  155 (454)
                             .+...............+..+..+|.+.+.+.++.  ++++++|++|...++.         ...|++...+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~~~---------v~gv~~~~~d-  153 (512)
T 3e1t_A           86 EPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVD--VRERHEVIDVLFEGER---------AVGVRYRNTE-  153 (512)
T ss_dssp             CSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEETTE---------EEEEEEECSS-
T ss_pred             CccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEECCE---------EEEEEEEeCC-
Confidence                   00000000001112256788999999999988877  9999999999875431         2224554322 


Q ss_pred             CeEEEEEeCEEEEccCCCC
Q 044575          156 DKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       156 ~~~~~~~~d~vViAtG~~~  174 (454)
                      +...++.+|.||.|+|.++
T Consensus       154 G~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          154 GVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             SCEEEEEEEEEEECCCTTC
T ss_pred             CCEEEEEcCEEEECCCcch
Confidence            3345789999999999544

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.05  E-value=2.3e-09  Score=110.20  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCC----CC------Cccc--cccccce-----ec
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD----QT------EVHS--SVYASLR-----LT   73 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~----~~------~~~~--~~~~~~~-----~~   73 (454)
                      ..+||+|||||++|++||..|++.|.+|+||||.+.+||........-    +.      ...+  ..+..+.     ..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            357999999999999999999999999999999998877543321100    00      0000  0000000     00


Q ss_pred             CCc-----------cc--cccCCCCCCC---CCCCCC-------CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEE
Q 044575           74 SPR-----------EI--MGYTDFPFVL---KKGRDV-------RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG  130 (454)
Q Consensus        74 ~~~-----------~~--~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~  130 (454)
                      .+.           .+  +.-.+.++..   ..+...       ........+.+.|.+.+++.++.  ++++++|+++.
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~  277 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLV  277 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEE
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEEEEEE
Confidence            000           00  0000111110   000000       01134678889999999998988  99999999998


Q ss_pred             EcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ..+++.        -+-|++.+. ++...++.+|.||+|||.++.
T Consensus       278 ~~~~g~--------v~Gv~~~~~-~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          278 VNDDHS--------VVGAVVHGK-HTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             ECTTSB--------EEEEEEEET-TTEEEEEEEEEEEECCCCCTT
T ss_pred             ECCCCc--------EEEEEEEeC-CCcEEEEEcCEEEEecCCccc
Confidence            764120        233555532 234457899999999996653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.05  E-value=1.8e-09  Score=111.19  Aligned_cols=152  Identities=22%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCC---CC-------Cccc--cccccc-----eecC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD---QT-------EVHS--SVYASL-----RLTS   74 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~---~~-------~~~~--~~~~~~-----~~~~   74 (454)
                      .+||+|||||++|++||..|++.|.+|+||||.+.+||........-   ..       ...+  ..+..+     ....
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            57999999999999999999999999999999998887654432110   00       0000  000000     0000


Q ss_pred             Ccc-------------ccccCCCCCCC---CCCCCCC-------CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575           75 PRE-------------IMGYTDFPFVL---KKGRDVR-------RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM  131 (454)
Q Consensus        75 ~~~-------------~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~  131 (454)
                      +..             .+.-.+.++..   ..+...+       .......+...|.+.+++.++.  ++++++|+++..
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~  283 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK  283 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEE
Confidence            000             00001111110   0000000       0123578889999999988887  999999999987


Q ss_pred             cCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+++.        -+-|.+.+. ++...++.+|.||+|||.++
T Consensus       284 ~~~g~--------v~Gv~~~~~-~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          284 DDKGT--------VKGILVKGM-YKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             CTTSC--------EEEEEEEET-TTEEEEEECSEEEECCCCCT
T ss_pred             cCCCe--------EEEEEEEeC-CCcEEEEECCeEEEeCCCcc
Confidence            64221        233555542 23455789999999999654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.05  E-value=1.4e-09  Score=111.33  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=86.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC------------Cc--ccccc---ccceecC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT------------EV--HSSVY---ASLRLTS   74 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~------------~~--~~~~~---~~~~~~~   74 (454)
                      .+||+||||||+|+++|..|++.|.+|+|||+.+.++....-....+..            ..  ..+..   .......
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  105 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR  105 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence            4799999999999999999999999999999987664321100000000            00  00000   0000000


Q ss_pred             --CccccccCCCCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCc
Q 044575           75 --PREIMGYTDFPFVLKK-------GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIK  145 (454)
Q Consensus        75 --~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~  145 (454)
                        ...+..   ++++...       ........++..+.++|.+.+.+.     ++++++|++++..++          .
T Consensus       106 ~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~~----------~  167 (549)
T 2r0c_A          106 VGGHEVYR---IPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRDD----------H  167 (549)
T ss_dssp             BTSCEEEE---ECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECSS----------C
T ss_pred             CCCceeEe---ecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeCC----------E
Confidence              000000   1111000       001112346778888888887765     789999999987643          6


Q ss_pred             EEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          146 WVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +++++.+..++...++++|+||.|+|.+|
T Consensus       168 v~v~~~~~~~G~~~~i~a~~vVgADG~~S  196 (549)
T 2r0c_A          168 VRATITDLRTGATRAVHARYLVACDGASS  196 (549)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred             EEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence            78888763323345789999999999655

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.04  E-value=1.7e-09  Score=111.32  Aligned_cols=151  Identities=16%  Similarity=0.209  Sum_probs=88.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc------CCcEEEEeeCCCCCcccccCCCCCCC----Cc------ccccc-----ccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDVGGQWLYDPNTDQT----EV------HSSVY-----ASL   70 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~------g~~v~vie~~~~~GG~w~~~~~~~~~----~~------~~~~~-----~~~   70 (454)
                      .+||+|||||+||+++|..|++.      |.+|+||||.+.+|+...........    ++      ..+..     ..+
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~  114 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF  114 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence            47999999999999999999999      99999999998887643211111100    00      00000     000


Q ss_pred             eecCCccccccCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575           71 RLTSPREIMGYTDFPF-VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK  149 (454)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~  149 (454)
                      ..........+...+. ..  ........++.++.+.|.+.+++.++.  ++++++|+++...+++.        .+.|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~--~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~--------V~gV~  182 (584)
T 2gmh_A          115 GILTEKYRIPVPILPGLPM--NNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGS--------VKGIA  182 (584)
T ss_dssp             EEECSSCEEECCCCTTSTT--CCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSS--------EEEEE
T ss_pred             eeeccCCCccccccCcccc--ccCCCEEEeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCC--------EEEEE
Confidence            0000000011110110 00  001122356788999999999988887  99999999998765321        22355


Q ss_pred             Eeec---CCCeE-------EEEEeCEEEEccCCCC
Q 044575          150 SKEK---KADKV-------VEEVFDAVVVATGHYS  174 (454)
Q Consensus       150 ~~~~---~~~~~-------~~~~~d~vViAtG~~~  174 (454)
                      +.+.   .++..       .++.+|+||+|+|.++
T Consensus       183 ~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          183 TNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             ECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             eCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            5420   01111       3789999999999654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.04  E-value=5.3e-10  Score=109.09  Aligned_cols=60  Identities=20%  Similarity=0.063  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           97 FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        97 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .....++...+.+.+++.++.  +.++++|++|...++          .|.|++.++      ++.+|+||+|+|.++
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~----------~~~v~~~~g------~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDGE----------ALFIKTPSG------DVWANHVVVASGVWS  219 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSSS----------SEEEEETTE------EEEEEEEEECCGGGT
T ss_pred             EEcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEECC----------EEEEEcCCc------eEEcCEEEECCChhH
Confidence            345678888999989888887  889999999986543          676655322      689999999999644

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.04  E-value=1.2e-09  Score=111.97  Aligned_cols=65  Identities=18%  Similarity=0.018  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+...+.+.|..  +.++++|+++...++.         -|.|++.+..++...++.+|.||+|+|.++
T Consensus       168 d~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~---------v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          168 DDARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGK---------VVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTE---------EEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCe---------EEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            3466777777778888887  9999999999886432         466888764444556889999999999754

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.03  E-value=6.6e-10  Score=111.14  Aligned_cols=142  Identities=17%  Similarity=0.079  Sum_probs=85.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC--CcccccCCCCCCC-----Ccccc-------ccccceecCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV--GGQWLYDPNTDQT-----EVHSS-------VYASLRLTSPRE   77 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~--GG~w~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~   77 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+.+..  |..+.... ....     -....       .........+..
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~-l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   84 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDA-VSKAHFDKLGMPYPKGEELENKINGIKLYSPDM   84 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCE-EEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCccccccc-ccHHHHHHhcCCCCchHHHHhhhcceEEECCCC
Confidence            489999999999999999999999999999998753  22211000 0000     00000       000000001100


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCC
Q 044575           78 IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKAD  156 (454)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~  156 (454)
                      ..   .++++     .......+.++.+.|.+.+.+.++.  ++++++|+++...++          ... |++.+..++
T Consensus        85 ~~---~~~~~-----~~~~~i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~----------~v~gv~~~~~~~G  144 (453)
T 3atr_A           85 QT---VWTVN-----GEGFELNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFEDG----------YVKGAVLFNRRTN  144 (453)
T ss_dssp             SC---EEEEE-----EEEEEECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETT----------EEEEEEEEETTTT
T ss_pred             ce---EEeEC-----CCcEEEcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEECC----------EEEEEEEEEcCCC
Confidence            00   00000     0011245678889999988888877  999999999987543          332 555532123


Q ss_pred             eEEEEEeCEEEEccCCCC
Q 044575          157 KVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       157 ~~~~~~~d~vViAtG~~~  174 (454)
                      ...++.+|.||.|+|.++
T Consensus       145 ~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A          145 EELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             EEEEEECSEEEECCGGGC
T ss_pred             ceEEEEcCEEEECcCCch
Confidence            445789999999999544

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.03  E-value=2.8e-10  Score=103.13  Aligned_cols=146  Identities=18%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC-----------------c---------------CccchhhhccC--
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN-----------------I---------------SEGLSKVISKH--  251 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~-----------------~---------------~~~~~~~l~~~--  251 (454)
                      -+|+|||+|++|+++|..|++.+.+|+++++...                 +               ...+.+.+.+.  
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            3699999999999999999999999999998621                 0               01112223332  


Q ss_pred             CCeEEcCceeEEecC-C---cEEEeCCCEEeeceEEEccCcccCCcC-----------------------CCCCCceeeC
Q 044575          252 NNLHLHPQIDCLRED-G---RVTFVDGCWVTADTILYCTGYSYSFPF-----------------------LDTKGIVVVD  304 (454)
Q Consensus       252 ~~i~~~~~v~~v~~~-~---~v~~~dG~~i~~D~vI~atG~~~~~~~-----------------------l~~~g~i~v~  304 (454)
                      .+++ ...|+++..+ +   .|.+.+|+++++|.||+|||...+...                       |.+.+ +.++
T Consensus        84 v~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g-~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLG-FRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTT-CCEE
T ss_pred             cEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCC-CeEE
Confidence            2344 5678887633 2   366778888999999999999544221                       00011 0010


Q ss_pred             C----------C----------CcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCC
Q 044575          305 D----------D----------RVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       305 ~----------~----------~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~  353 (454)
                      .          .          ...+.-+..+..+..|+||++|++.....+..+..|++.+|.+|..+
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~~  230 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHE  230 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecccCccHHHHHHHHHHHHHHHHhh
Confidence            0          0          00000111222235799999999992235678889999999988543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.99  E-value=2.1e-09  Score=104.77  Aligned_cols=59  Identities=17%  Similarity=0.048  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .....+...+.+.+++.++.  +.++++|+++...++          .|. |++.++      ++.+|+||+|+|.++
T Consensus       146 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~----------~v~gv~~~~g------~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          146 ADPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIENN----------EIKGVKTNKG------IIKTGIVVNATNAWA  205 (382)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSS----------BEEEEEETTE------EEECSEEEECCGGGH
T ss_pred             ECHHHHHHHHHHHHHHCCCE--EECCceEEEEEEECC----------EEEEEEECCc------EEECCEEEECcchhH
Confidence            34677888888888888887  889999999987643          566 665432      689999999999654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.99  E-value=2.1e-09  Score=105.43  Aligned_cols=149  Identities=17%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC------CcccccCCCCCCCCcccccccccee-cCCcccccc--C-
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV------GGQWLYDPNTDQTEVHSSVYASLRL-TSPREIMGY--T-   82 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~------GG~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-   82 (454)
                      +||+|||||++|+++|..|++.|++|+|||+.+..      ++.. ..+..-..+-....++.+.. ..+...+.+  . 
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~-l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   81 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGV-LEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCE-ECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEe-ECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence            68999999999999999999999999999997642      1110 00000000000000000000 000000000  0 


Q ss_pred             ---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575           83 ---DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV  159 (454)
Q Consensus        83 ---~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (454)
                         .+.++............+.++.+.+.+.+.+.++.  ++++++|++++..+++         .+.|++.+.  +...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~---------~~~v~~~~~--g~~~  148 (394)
T 1k0i_A           82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGE---------RPYVTFERD--GERL  148 (394)
T ss_dssp             EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSS---------SCEEEEEET--TEEE
T ss_pred             ceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCC---------ceEEEEecC--CcEE
Confidence               00000000001111235677888888888777776  9999999999865332         577777322  3334


Q ss_pred             EEEeCEEEEccCCCCC
Q 044575          160 EEVFDAVVVATGHYSY  175 (454)
Q Consensus       160 ~~~~d~vViAtG~~~~  175 (454)
                      ++.+|.||.|+|.++.
T Consensus       149 ~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          149 RLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             EEECSEEEECCCTTCS
T ss_pred             EEEeCEEEECCCCCcH
Confidence            6899999999996554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.99  E-value=2.3e-09  Score=112.65  Aligned_cols=59  Identities=22%  Similarity=0.341  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  ++++++|+++...++          .|.|++.++.     ++.+|+||+|||.++
T Consensus       415 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~~----------~v~V~t~~G~-----~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          415 CPAELTRNVLELAQQQGLQ--IYYQYQLQNFSRKDD----------CWLLNFAGDQ-----QATHSVVVLANGHQI  473 (676)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEETT----------EEEEEETTSC-----EEEESEEEECCGGGG
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeCC----------eEEEEECCCC-----EEECCEEEECCCcch
Confidence            4567888888888888887  999999999987643          6878776544     689999999999754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.99  E-value=4.2e-10  Score=106.63  Aligned_cols=108  Identities=17%  Similarity=0.169  Sum_probs=63.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcc--ccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPRE--IMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   87 (454)
                      .+||+|||||++|+++|..|++.  |++|+|||+.+.+||.....++....         .... +..  .+.-.+.++.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~---------~~~~-~~~~~~L~~~Gv~~~  148 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSA---------MVMR-KPADVFLDEVGVPYE  148 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCC---------EEEE-TTTHHHHHHHTCCCE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchh---------hhcc-hHHHHHHHHcCCccc
Confidence            58999999999999999999997  99999999998887543322222111         1110 000  0000112221


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcC
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLD  133 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~  133 (454)
                      .. + .........++.+.|.+.+.. .++.  ++++++|+++...+
T Consensus       149 ~~-G-~~~~~~~~~d~~~~L~~~a~~~~gV~--i~~~~~V~dLi~~~  191 (344)
T 3jsk_A          149 DE-G-DYVVVKHAALFTSTVLSKVLQRPNVK--LFNATTVEDLITRK  191 (344)
T ss_dssp             EC-S-SEEEESCHHHHHHHHHHHHHTCTTEE--EEETEEEEEEEEEE
T ss_pred             cc-C-CeEEEecHHHHHHHHHHHHHhCCCCE--EEeCCEEEEEEecC
Confidence            10 0 000011235556666666655 3665  88899999887654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.98  E-value=1.2e-09  Score=106.07  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCCCCC
Q 044575          100 HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLP  179 (454)
Q Consensus       100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p  179 (454)
                      ...+...+.+.+.+.++.  +.++++|+++...++          .|.|++.++      ++.+|+||+|+|.++....+
T Consensus       148 ~~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~----------~~~v~~~~g------~~~a~~vV~a~G~~s~~l~~  209 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDDD----------GVTIETADG------EYQAKKAIVCAGTWVKDLLP  209 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSS----------SEEEEESSC------EEEEEEEEECCGGGGGGTST
T ss_pred             HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcCC----------EEEEEECCC------eEEcCEEEEcCCccHHhhcc
Confidence            457788888888888887  889999999987543          677765432      58999999999976544333

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.96  E-value=1.3e-09  Score=108.23  Aligned_cols=47  Identities=36%  Similarity=0.569  Sum_probs=41.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc--CCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY--DPNTDQ   59 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~--~~~~~~   59 (454)
                      +||+|||||++|++||..|++.|.+|+|+|+++.+||.+..  ..|.|.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg   50 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPG   50 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCC
Confidence            68999999999999999999999999999999999998763  355444

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.93  E-value=3.1e-09  Score=104.48  Aligned_cols=35  Identities=40%  Similarity=0.595  Sum_probs=32.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      .+|+||||||+|+++|..|++.|++|+||||.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.92  E-value=1.4e-08  Score=104.28  Aligned_cols=152  Identities=23%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCC----CCC-----c-cc--cccccce-----ecC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD----QTE-----V-HS--SVYASLR-----LTS   74 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~----~~~-----~-~~--~~~~~~~-----~~~   74 (454)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.+||........-    +..     . .+  ..+..+.     .+.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            57999999999999999999999999999999998887654332100    000     0 00  0000000     000


Q ss_pred             Ccc----------c---cccCCCCCCCC---CCCCC-------CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575           75 PRE----------I---MGYTDFPFVLK---KGRDV-------RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM  131 (454)
Q Consensus        75 ~~~----------~---~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~  131 (454)
                      +..          .   +.-.+.++...   .+...       ........+...|.+.+++.++.  ++++++|+++..
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~  283 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILE  283 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCe--EEecCEEEEEEE
Confidence            000          0   00001111100   00000       01123678889999999998887  999999999976


Q ss_pred             cCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+++.        -+-|.+.+. ++...++.+|.||+|||.++
T Consensus       284 ~~~g~--------v~GV~~~~~-~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          284 DASGK--------VTGVLVKGE-YTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             C--CC--------EEEEEEEET-TTEEEEEECSEEEECCCCCT
T ss_pred             CCCCe--------EEEEEEEeC-CCcEEEEEcCEEEEeCCCCc
Confidence            54121        344555542 23445789999999999654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.92  E-value=4.1e-09  Score=106.93  Aligned_cols=40  Identities=35%  Similarity=0.518  Sum_probs=37.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      .+||||||||++|++||..|++.|.+|+|+||.+.+||.-
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            5799999999999999999999999999999999888754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.91  E-value=2.2e-09  Score=104.48  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  ++++++|++|...++          .|.|++.++      ++.+|+||+|+|.++
T Consensus       152 ~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~----------~~~V~t~~g------~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          152 DTDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVDG----------AWEVRCDAG------SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EESSCCCCEEEEETT----------EEEEECSSE------EEEESEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeCC----------eEEEEeCCC------EEEcCEEEECCChhH
Confidence            4567888888888888887  889999999987643          677766543      689999999999654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.88  E-value=1e-08  Score=106.74  Aligned_cols=158  Identities=16%  Similarity=0.078  Sum_probs=89.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCCCCCcccccCCCCCCC--------C----cc-ccccccceecCC-
Q 044575           11 QSKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGGQWLYDPNTDQT--------E----VH-SSVYASLRLTSP-   75 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~~~GG~w~~~~~~~~~--------~----~~-~~~~~~~~~~~~-   75 (454)
                      ..+||+||||||+|+++|..|++ .|.+|+|||+.+..+....-....+..        .    .. ...........+ 
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            35799999999999999999999 999999999987653221100000000        0    00 000000000000 


Q ss_pred             ----ccccccCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           76 ----REIMGYTDFPFVLKK-GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        76 ----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                          ..+.....++..... ........++..+.++|.+.+.+.+....++++++|++++..+++.     .. .++|++
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~-----~~-~v~v~~  184 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAA-----DY-PVTVTL  184 (639)
T ss_dssp             TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCS-----SC-CEEEEE
T ss_pred             CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCC-----cC-CEEEEE
Confidence                000000000000000 0001123567889999999999987622389999999998764210     01 477777


Q ss_pred             eec---CCCeEEEEEeCEEEEccCCCC
Q 044575          151 KEK---KADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       151 ~~~---~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+.   .++...++++|+||.|+|.+|
T Consensus       185 ~~~~~~~~G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          185 ERCDAAHAGQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             EECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred             EeccccCCCCeEEEEeCEEEECCCcch
Confidence            641   113345789999999999655

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.87  E-value=8.2e-09  Score=101.24  Aligned_cols=36  Identities=44%  Similarity=0.746  Sum_probs=33.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      .+||+|||||++|+++|..|++.|.+|+|+|+.+..
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   39 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            479999999999999999999999999999998654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.86  E-value=9.4e-09  Score=100.95  Aligned_cols=60  Identities=17%  Similarity=-0.018  Sum_probs=45.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .....+...+.+.+++.++.  ++++++|+++...++.         .|.|++.++      ++.+|+||+|+|.++
T Consensus       171 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~---------~~~v~~~~g------~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          171 AKHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEK---------VTGVKTTRG------TIHAGKVALAGAGHS  230 (405)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSB---------EEEEEETTC------CEEEEEEEECCGGGH
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCE---------EEEEEeCCc------eEECCEEEECCchhH
Confidence            34567888888888888887  8999999999876432         466766432      578999999999543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.84  E-value=1.6e-08  Score=102.30  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+.+.|+.  +.++++|+++...+ .         .|.|++.+..++...++.+|.||+|+|.++
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~-~---------~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGE--VLTRTRATSARREN-G---------LWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-T---------EEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-C---------EEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            4567778888888888887  88999999998764 2         688888653334445789999999999754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.83  E-value=2.1e-08  Score=100.17  Aligned_cols=102  Identities=26%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+.                                    |.     
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l------------------------------------~~-----  205 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL------------------------------------PT-----  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC------------------------------------TT-----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc------------------------------------cc-----
Confidence            4789999999999999999999999999999976430                                    00     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+.+++.++.  ++++++|.+++..++          .+.+++.++.     ++.+|.||+|+|
T Consensus       206 -------~~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~~----------~v~v~~~~g~-----~i~~D~vv~A~G  261 (455)
T 2yqu_A          206 -------MDLEVSRAAERVFKKQGLT--IRTGVRVTAVVPEAK----------GARVELEGGE-----VLEADRVLVAVG  261 (455)
T ss_dssp             -------SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEEETT----------EEEEEETTSC-----EEEESEEEECSC
T ss_pred             -------cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCC----------EEEEEECCCe-----EEEcCEEEECcC
Confidence                   1156777788888888988  999999999987542          4556654443     689999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+.+.
T Consensus       262 --~~p~~~~  268 (455)
T 2yqu_A          262 --RRPYTEG  268 (455)
T ss_dssp             --EEECCTT
T ss_pred             --CCcCCCC
Confidence              7777643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.83  E-value=1.3e-08  Score=95.93  Aligned_cols=108  Identities=21%  Similarity=0.334  Sum_probs=63.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceecCC-ccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLTSP-REIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   87 (454)
                      .+||+|||||++|+++|..|++.  |.+|+|+|+.+.+|| .|....          .+........ ...+.-.+.++.
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~----------~~~~~~~~~~~~~~L~~~Gv~~~  134 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQ----------LFSAMVMRKPAHLFLQELEIPYE  134 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGG----------GCCCEEEETTTHHHHHHTTCCCE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCc----------ccchhhhhhHHHHHHHhhCcccc
Confidence            46999999999999999999998  999999999998874 453111          1111111000 000011122222


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcC
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLD  133 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~  133 (454)
                      .. + .........++...+.+.+... ++.  ++.+++|+++...+
T Consensus       135 ~~-g-~~~~~~~~~~~~~~L~~~a~~~~GV~--i~~~~~V~~Ll~~~  177 (326)
T 2gjc_A          135 DE-G-DYVVVKHAALFISTVLSKVLQLPNVK--LFNATCVEDLVTRP  177 (326)
T ss_dssp             EC-S-SEEEESCHHHHHHHHHHHHHTSTTEE--EETTEEEEEEEECC
T ss_pred             cC-C-CeEEEcchHHHHHHHHHHHHHhcCcE--EEecceeeeeeecc
Confidence            10 0 0000113456666666666553 655  78899999997663

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.82  E-value=7.5e-09  Score=106.81  Aligned_cols=154  Identities=17%  Similarity=0.130  Sum_probs=85.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc--------cccCCCCCCCCccccccccc------------
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTDQTEVHSSVYASL------------   70 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~--------w~~~~~~~~~~~~~~~~~~~------------   70 (454)
                      ..+||||||||+||++||..|++.|.+|+|+||....+|.        +........+.+....++.+            
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v   96 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI   96 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            3579999999999999999999999999999998654432        21111100010000000000            


Q ss_pred             ---eecCCccc--cccCCCCCCCCC----------CCC----------CCCC---CCHHHHHHHHHHHHHHhCCCccEEe
Q 044575           71 ---RLTSPREI--MGYTDFPFVLKK----------GRD----------VRRF---PGHKELWLYLKDFCQRFGLREMIRF  122 (454)
Q Consensus        71 ---~~~~~~~~--~~~~~~~~~~~~----------~~~----------~~~~---~~~~~~~~yl~~~~~~~~~~~~i~~  122 (454)
                         ..+.+..+  +.-.+.+|....          +..          ...+   .++..+...|.+.+.+.++.  +++
T Consensus        97 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~--i~~  174 (621)
T 2h88_A           97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTS--YFV  174 (621)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCE--EEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCE--EEE
Confidence               00000000  000122221100          000          0001   13457777787777777776  999


Q ss_pred             CeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          123 NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       123 ~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ++.|+++...++.         -.-|.+.+..++....+.++.||+|||.++.
T Consensus       175 ~~~v~~Li~~~g~---------v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          175 EYFALDLLMENGE---------CRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             TEEEEEEEEETTE---------EEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             ceEEEEEEEECCE---------EEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            9999999764321         2335554422344557899999999997654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.81  E-value=2.3e-08  Score=105.19  Aligned_cols=61  Identities=18%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ....+...+.+.+++.|+.  ++++++|+++...++          .|.|.+.++.    .++.+|.||+|+|.++.
T Consensus       410 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~~----------~v~V~t~~G~----~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          410 CPSDLTHALMMLAQQNGMT--CHYQHELQRLKRIDS----------QWQLTFGQSQ----AAKHHATVILATGHRLP  470 (689)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEECSS----------SEEEEEC-CC----CCEEESEEEECCGGGTT
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeCC----------eEEEEeCCCc----EEEECCEEEECCCcchh
Confidence            4467788888888888887  999999999987643          6888776531    14789999999997643

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.80  E-value=2e-08  Score=98.02  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ...++...+.+.+++.++.  ++++++|++++..++          .|.|++.++      ++.+|.||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~----------~~~v~~~~g------~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          148 FSENCIRAYRELAEARGAK--VLTHTRVEDFDISPD----------SVKIETANG------SYTADKLIVSMGAWN  205 (389)
T ss_dssp             EHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSS----------CEEEEETTE------EEEEEEEEECCGGGH
T ss_pred             eHHHHHHHHHHHHHHCCCE--EEcCcEEEEEEecCC----------eEEEEeCCC------EEEeCEEEEecCccH
Confidence            3467888888888888887  889999999987543          577765322      689999999999643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.79  E-value=1.9e-08  Score=103.49  Aligned_cols=154  Identities=18%  Similarity=0.118  Sum_probs=86.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc-CC---CCC----CCCccccccccc-------------
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY-DP---NTD----QTEVHSSVYASL-------------   70 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~-~~---~~~----~~~~~~~~~~~~-------------   70 (454)
                      .+||||||||++|++||..|++.|.+|+|+||.+..+|.-.. .+   +..    .+......++.+             
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~   86 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            479999999999999999999999999999998765432111 00   000    000000000000             


Q ss_pred             --eecCCccc--cccCCCCCCCCC----------CCC-------C--CCC---CCHHHHHHHHHHHHHHhCCCccEEeCe
Q 044575           71 --RLTSPREI--MGYTDFPFVLKK----------GRD-------V--RRF---PGHKELWLYLKDFCQRFGLREMIRFNT  124 (454)
Q Consensus        71 --~~~~~~~~--~~~~~~~~~~~~----------~~~-------~--~~~---~~~~~~~~yl~~~~~~~~~~~~i~~~~  124 (454)
                        ..+.+..+  +.-.+.++....          +..       .  ..+   ..+..+...|.+.+.+.++.  +++++
T Consensus        87 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~--i~~~~  164 (588)
T 2wdq_A           87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW  164 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCE--EEETE
T ss_pred             HHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCE--EEeCc
Confidence              00000000  000122221100          000       0  000   12467888888888888887  99999


Q ss_pred             EEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575          125 RVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus       125 ~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      .|+++...+++.        -+-|.+.+..++....+.+|.||+|||.++.
T Consensus       165 ~v~~L~~~~~g~--------v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          165 YALDLVKNQDGA--------VVGCTALCIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             EEEEEEECTTSC--------EEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             EEEEEEECCCCE--------EEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence            999998752221        2345554422344557899999999997553

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.79  E-value=3.5e-08  Score=103.07  Aligned_cols=36  Identities=33%  Similarity=0.602  Sum_probs=33.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHH-----cCCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRK-----EGHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~-----~g~~v~vie~~~~~   47 (454)
                      .+||+||||||+|+++|..|++     .|++|+|||+.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            4799999999999999999999     99999999997653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.78  E-value=4.8e-09  Score=96.75  Aligned_cols=40  Identities=33%  Similarity=0.629  Sum_probs=38.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      .||+|||||||||+||..|++.|++|+||||++.+||.+.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            6899999999999999999999999999999999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.75  E-value=9.6e-08  Score=96.05  Aligned_cols=107  Identities=22%  Similarity=0.311  Sum_probs=82.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  221 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-----------------------------------------  221 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-----------------------------------------
Confidence            478999999999999999999999999999997643110                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc-CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML-DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ...++.+++.+..++.++.  ++++++|.+++.. ++.         .+.|++.+..++...++.+|.||+|+
T Consensus       222 -------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~---------~~~v~~~~~~~g~~~~~~~D~vv~a~  283 (478)
T 1v59_A          222 -------MDGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKN---------VVEIVVEDTKTNKQENLEAEVLLVAV  283 (478)
T ss_dssp             -------SCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTT---------EEEEEEEETTTTEEEEEEESEEEECS
T ss_pred             -------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCCC---------eEEEEEEEcCCCCceEEECCEEEECC
Confidence                   0157778888888888988  9999999999862 111         45666653222233478999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       284 G--~~p~~~  290 (478)
T 1v59_A          284 G--RRPYIA  290 (478)
T ss_dssp             C--EEECCT
T ss_pred             C--CCcCCC
Confidence            9  777764

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.75  E-value=2e-08  Score=102.61  Aligned_cols=61  Identities=16%  Similarity=0.088  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ..+.++..+|.+.+.+.++.  ++++ +|+++...+++.        .+.|++.++.     ++.+|.||+|+|.++
T Consensus       162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~--------~~~v~~~~g~-----~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGY--------ISNLLTKEGR-----TLEADLFIDCSGMRG  222 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSC--------EEEEEETTSC-----EECCSEEEECCGGGC
T ss_pred             EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCc--------EEEEEECCCc-----EEEeCEEEECCCCch
Confidence            35678889999999888887  7888 899998754321        3456665443     689999999999544

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.73  E-value=8.9e-08  Score=95.89  Aligned_cols=107  Identities=26%  Similarity=0.319  Sum_probs=81.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  206 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP------------------------------------------  206 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            ....++.+++.+..++.++.  ++++++|.+|+..++          ...|++.+..++...++.+|.||+|+|
T Consensus       207 ------~~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~i~~D~vv~a~G  268 (464)
T 2eq6_A          207 ------QGDPETAALLRRALEKEGIR--VRTKTKAVGYEKKKD----------GLHVRLEPAEGGEGEEVVVDKVLVAVG  268 (464)
T ss_dssp             ------TSCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETT----------EEEEEEEETTCCSCEEEEESEEEECSC
T ss_pred             ------ccCHHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeCC----------EEEEEEeecCCCceeEEEcCEEEECCC
Confidence                  01157778888888888988  999999999986532          456666522102223689999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+.+.
T Consensus       269 --~~p~~~~  275 (464)
T 2eq6_A          269 --RKPRTEG  275 (464)
T ss_dssp             --EEESCTT
T ss_pred             --cccCCCC
Confidence              7777653

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.72  E-value=4.4e-09  Score=102.61  Aligned_cols=134  Identities=27%  Similarity=0.344  Sum_probs=77.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCC---CcccccCCCCCCCCcccccc-cc-ceec-CCcccccc--C
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDV---GGQWLYDPNTDQTEVHSSVY-AS-LRLT-SPREIMGY--T   82 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~---GG~w~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~--~   82 (454)
                      +||+|||||++|+++|..|++.  |.+|+|||+++.+   |+.....+..-......... .. +... .+...+.+  .
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3799999999999999999999  9999999998776   43322222111000000000 00 0000 00000000  0


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575           83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV  162 (454)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (454)
                      +..+....+ .......+.++.+.|.+.+.+.++.  ++++++|++++..            .              ++.
T Consensus        81 g~~~~~~~~-~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~------------~--------------~~~  131 (381)
T 3c4a_A           81 NEPSLMSTG-VLLCGVERRGLVHALRDKCRSQGIA--IRFESPLLEHGEL------------P--------------LAD  131 (381)
T ss_dssp             SSEEECCCC-SCEEEEEHHHHHHHHHHHHHHTTCE--EETTCCCCSGGGC------------C--------------GGG
T ss_pred             CeeEEecCC-CceeeecHHHHHHHHHHHHHHCCCE--EEeCCEeccchhc------------c--------------ccc
Confidence            101100000 0001256789999999999888877  8899988776321            0              236


Q ss_pred             eCEEEEccCCCCC
Q 044575          163 FDAVVVATGHYSY  175 (454)
Q Consensus       163 ~d~vViAtG~~~~  175 (454)
                      +|.||.|+|.+|.
T Consensus       132 ad~vV~AdG~~S~  144 (381)
T 3c4a_A          132 YDLVVLANGVNHK  144 (381)
T ss_dssp             CSEEEECCGGGGG
T ss_pred             CCEEEECCCCCch
Confidence            9999999997665

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.72  E-value=6.5e-08  Score=96.47  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=81.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  204 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------------  204 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh------------------------------------------
Confidence            47899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  -..++.+.+.+..++.++.  ++++++|.+++..+++         ...|++.++.     ++.+|.||+|+|
T Consensus       205 ----~--~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~g~-----~i~~D~vv~a~G  262 (450)
T 1ges_A          205 ----S--FDPMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDG---------SLTLELEDGR-----SETVDCLIWAIG  262 (450)
T ss_dssp             ----T--SCHHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTS---------CEEEEETTSC-----EEEESEEEECSC
T ss_pred             ----h--hhHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCc---------EEEEEECCCc-----EEEcCEEEECCC
Confidence                0  0146777888888888988  9999999999875432         4667776553     789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       263 --~~p~~~  268 (450)
T 1ges_A          263 --REPAND  268 (450)
T ss_dssp             --EEESCT
T ss_pred             --CCcCCC
Confidence              677764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.72  E-value=5.8e-08  Score=104.35  Aligned_cols=59  Identities=17%  Similarity=0.059  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  ++++++|++|...++.         -+.|.+.++      ++.+|+||+|+|.++
T Consensus       149 ~p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~~~---------v~~V~t~~G------~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          149 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGR---------VTGVQTADG------VIPADIVVSCAGFWG  207 (830)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTE---------EEEEEETTE------EEECSEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EECCceEEEEEEeCCE---------EEEEEECCc------EEECCEEEECCccch
Confidence            4567888888888888887  8899999999875431         234555432      689999999999654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.70  E-value=7.8e-08  Score=96.27  Aligned_cols=40  Identities=38%  Similarity=0.549  Sum_probs=37.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC------CcEEEEeeCCCCCccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG------HRVVVLEQNHDVGGQW   51 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g------~~v~vie~~~~~GG~w   51 (454)
                      .+||+|||||++||+||.+|++.|      .+|+|+|+++.+||..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~   50 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKI   50 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceE
Confidence            379999999999999999999999      9999999999999854

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.70  E-value=3.2e-08  Score=102.08  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=33.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVG   48 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~G   48 (454)
                      .+||+|||||++|++||..|++.|  .+|+||||.+..+
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~   43 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR   43 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCC
Confidence            479999999999999999999999  9999999986543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.69  E-value=1.3e-07  Score=94.54  Aligned_cols=104  Identities=19%  Similarity=0.201  Sum_probs=80.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  207 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------------  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+++.+..++.++.  ++++++|.+++..++          ...+++...  +...++.+|.||+|+|
T Consensus       208 ----~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~~--g~~~~~~~D~vv~a~G  267 (455)
T 1ebd_A          208 ----G--FEKQMAAIIKKRLKKKGVE--VVTNALAKGAEERED----------GVTVTYEAN--GETKTIDADYVLVTVG  267 (455)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETT----------EEEEEEEET--TEEEEEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCC----------eEEEEEEeC--CceeEEEcCEEEECcC
Confidence                0  1157778888888888988  999999999986532          445555421  2234789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+.+
T Consensus       268 --~~p~~~  273 (455)
T 1ebd_A          268 --RRPNTD  273 (455)
T ss_dssp             --EEESCS
T ss_pred             --CCcccC
Confidence              777754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.69  E-value=3.5e-08  Score=102.56  Aligned_cols=64  Identities=14%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          100 HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +..+...|.+.+.+.++.  ++.++.|+++...++.         -.-|.+.+..++....+.+|.||+|||.++
T Consensus       157 G~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~g~---------v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQDGK---------CYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTE---------EEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEECcEEEEEEecCCE---------EEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            457888888888888887  9999999999764321         223444432234455789999999999765

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.68  E-value=6.7e-08  Score=98.92  Aligned_cols=61  Identities=21%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           98 PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....++.++|.+.+++. ++.  ++++ +|++|...+++.        .+.|++.++.     ++.+|.||+|+|..+
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~~g~--------~~~v~~~~G~-----~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDANGN--------IESVRTATGR-----VFDADLFVDCSGFRG  252 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECTTSC--------EEEEEETTSC-----EEECSEEEECCGGGC
T ss_pred             EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcCCCC--------EEEEEECCCC-----EEECCEEEECCCCch
Confidence            56778999999999998 887  8889 999998754321        2456665443     689999999999544

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.67  E-value=8.6e-08  Score=99.78  Aligned_cols=35  Identities=34%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             CCcEEEECcChHHHHHHHHHH---H-cCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELR---K-EGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~---~-~g~~v~vie~~~~   46 (454)
                      .+||||||||+||++||..|+   + .|.+|+|+||.+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            579999999999999999999   6 7999999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.67  E-value=1.6e-07  Score=95.63  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           98 PGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ..+..+.++|.+.+.+ .++.  ++++ +|++++..+++.        ...|++.++.     ++.+|+||.|+|.++
T Consensus       172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~~g~--------~~~v~~~~g~-----~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQHGD--------IEKLITKQNG-----EISGQLFIDCTGAKS  233 (526)
T ss_dssp             ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECTTSC--------EEEEEESSSC-----EEECSEEEECSGGGC
T ss_pred             EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecCCCc--------EEEEEECCCC-----EEEcCEEEECCCcch
Confidence            4677889999999988 7887  8888 699998754321        2345554433     589999999999544

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.66  E-value=1.2e-07  Score=92.53  Aligned_cols=101  Identities=20%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----------------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence            578999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            ....++.+.+.+..++.++.  ++++++|.+++..++          .+.|++.++.     ++.+|.||+|+|
T Consensus       184 ------~~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~d~vv~a~G  240 (384)
T 2v3a_A          184 ------LLHPAAAKAVQAGLEGLGVR--FHLGPVLASLKKAGE----------GLEAHLSDGE-----VIPCDLVVSAVG  240 (384)
T ss_dssp             ------TSCHHHHHHHHHHHHTTTCE--EEESCCEEEEEEETT----------EEEEEETTSC-----EEEESEEEECSC
T ss_pred             ------ccCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCC----------EEEEEECCCC-----EEECCEEEECcC
Confidence                  01156777888888888887  899999999986532          5667766543     789999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        ..|+.
T Consensus       241 --~~p~~  245 (384)
T 2v3a_A          241 --LRPRT  245 (384)
T ss_dssp             --EEECC
T ss_pred             --CCcCH
Confidence              66665

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.66  E-value=7.5e-08  Score=96.25  Aligned_cols=102  Identities=23%  Similarity=0.276  Sum_probs=77.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  209 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----------------------------------------  209 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence            478999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+++.+..++.++.  ++++++|.+++. +           ...++..++   ...++.+|.||+|+|
T Consensus       210 -------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~-~-----------~v~v~~~~G---~~~~i~~D~vv~a~G  265 (458)
T 1lvl_A          210 -------YDSELTAPVAESLKKLGIA--LHLGHSVEGYEN-G-----------CLLANDGKG---GQLRLEADRVLVAVG  265 (458)
T ss_dssp             -------SCHHHHHHHHHHHHHHTCE--EETTCEEEEEET-T-----------EEEEECSSS---CCCEECCSCEEECCC
T ss_pred             -------cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEe-C-----------CEEEEECCC---ceEEEECCEEEECcC
Confidence                   0156777888888888988  999999999875 2           423331122   123689999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+.+.
T Consensus       266 --~~p~~~~  272 (458)
T 1lvl_A          266 --RRPRTKG  272 (458)
T ss_dssp             --EEECCSS
T ss_pred             --CCcCCCC
Confidence              7787653

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.65  E-value=1.4e-08  Score=103.38  Aligned_cols=38  Identities=37%  Similarity=0.559  Sum_probs=33.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      .+||+|||||++|++||..|++ |.+|+|+||.+..+|.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            5799999999999999999999 9999999998876543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.65  E-value=1.1e-07  Score=97.59  Aligned_cols=64  Identities=14%  Similarity=0.015  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          100 HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ...+...+.+.+.+.|..  +.++++|+++...++.         -|.|++.+..++...++.+|.||+|+|.++
T Consensus       187 ~~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~---------v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQ---------IVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTE---------EEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             hHHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCE---------EEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            345555566667778887  8899999999876432         467777653333445789999999999754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.65  E-value=2.5e-07  Score=92.92  Aligned_cols=108  Identities=24%  Similarity=0.281  Sum_probs=81.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  216 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV-----------------------------------------  216 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS-----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc-----------------------------------------
Confidence            478999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  -..++.+++.+..++.++.  ++++++|.+++..++.         ...+++.+...+...++.+|.||+|+|
T Consensus       217 ----~--~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~~~~~~~~~i~~D~vv~a~G  279 (474)
T 1zmd_A          217 ----G--IDMEISKNFQRILQKQGFK--FKLNTKVTGATKKSDG---------KIDVSIEAASGGKAEVITCDVLLVCIG  279 (474)
T ss_dssp             ----S--CCHHHHHHHHHHHHHTTCE--EECSEEEEEEEECTTS---------CEEEEEEETTSCCCEEEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCceEEEEEEcCCc---------eEEEEEEecCCCCceEEEcCEEEECcC
Confidence                0  0157778888888888988  9999999999875431         256665421111223689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       280 --~~p~~~  285 (474)
T 1zmd_A          280 --RRPFTK  285 (474)
T ss_dssp             --EEECCT
T ss_pred             --CCcCCC
Confidence              777764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.64  E-value=2.3e-07  Score=93.84  Aligned_cols=103  Identities=14%  Similarity=0.205  Sum_probs=80.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  213 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------------------------------------------  213 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------------------------------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  -..++.+.+.+..++.++.  ++++++|.+|+..+++         ...|++.++.   . .+.+|.||+|+|
T Consensus       214 ----~--~d~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~g~---~-~~~~D~vi~a~G  272 (500)
T 1onf_A          214 ----K--FDESVINVLENDMKKNNIN--IVTFADVVEIKKVSDK---------NLSIHLSDGR---I-YEHFDHVIYCVG  272 (500)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTT---------CEEEEETTSC---E-EEEESEEEECCC
T ss_pred             ----c--cchhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCc---------eEEEEECCCc---E-EEECCEEEECCC
Confidence                0  0156778888888888988  9999999999865432         4667666543   1 389999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       273 --~~p~~~  278 (500)
T 1onf_A          273 --RSPDTE  278 (500)
T ss_dssp             --BCCTTT
T ss_pred             --CCcCCC
Confidence              777763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.64  E-value=2.8e-07  Score=92.98  Aligned_cols=106  Identities=20%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  236 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-----------------------------------------  236 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-----------------------------------------
Confidence            478999999999999999999999999999987643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+..++.++.  ++++++|.+++..++          ...+++.+..++...++.+|.||+|+|
T Consensus       237 -------~d~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~i~~D~Vi~a~G  297 (491)
T 3urh_A          237 -------MDGEVAKQLQRMLTKQGID--FKLGAKVTGAVKSGD----------GAKVTFEPVKGGEATTLDAEVVLIATG  297 (491)
T ss_dssp             -------SCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETT----------EEEEEEEETTSCCCEEEEESEEEECCC
T ss_pred             -------CCHHHHHHHHHHHHhCCCE--EEECCeEEEEEEeCC----------EEEEEEEecCCCceEEEEcCEEEEeeC
Confidence                   0157778888888888888  899999999987643          556776653222234789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       298 --~~p~~~  303 (491)
T 3urh_A          298 --RKPSTD  303 (491)
T ss_dssp             --CEECCT
T ss_pred             --CccCCC
Confidence              677764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.63  E-value=1.8e-07  Score=93.57  Aligned_cols=176  Identities=14%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .++|+|||||.+|+.+|..|++.  +.+|+++++++.+-..    .  .+. .....+      .|...-.|..++....
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~----~--~~~-~~~~~~------~p~~~~~~~~l~~~~~  293 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA----D--DSP-FVNEVF------APKFTDLIYSREHAER  293 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC----C--CCH-HHHGGG------SHHHHHHHHHSCHHHH
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc----c--CCc-cchhcc------ChhHHHHHhcCCHHHH
Confidence            57899999999999999999998  8899999998743100    0  000 000000      0000000000000000


Q ss_pred             ------CCCCCCCCCCHHHHHHHHHH-HHHH----hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 ------KGRDVRRFPGHKELWLYLKD-FCQR----FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ------~~~~~~~~~~~~~~~~yl~~-~~~~----~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                            .......-...+.+.+.... |.++    .++.  ++++++|++|+..++          .|.|++.+..++..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~--i~~~~~v~~v~~~~~----------~~~v~~~~~~~g~~  361 (463)
T 3s5w_A          294 ERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHA--FRCMTTVERATATAQ----------GIELALRDAGSGEL  361 (463)
T ss_dssp             HHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSE--EETTEEEEEEEEETT----------EEEEEEEETTTCCE
T ss_pred             HHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeE--EEeCCEEEEEEecCC----------EEEEEEEEcCCCCe
Confidence                  00000000011111111111 1111    3444  899999999987543          78898886544556


Q ss_pred             EEEEeCEEEEccCCCCCCC--CCCCCCcCCccceeEEeecCCCCCC-CCCCeEEEEcCC
Q 044575          159 VEEVFDAVVVATGHYSYPR--LPSIKGMDKWKRKQMHSHIYRVPEP-FRNEVVVVVGNS  214 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~--~p~i~G~~~~~~~~~~~~~~~~~~~-~~~k~vvVVG~G  214 (454)
                      .++.+|.||+|||  ..|+  .+.+.++....+.+.....++.... ....+|-++|..
T Consensus       362 ~~~~~D~Vv~AtG--~~p~~~~~~l~~l~~~~g~i~v~~~~~~~~~~~~~~~Ifa~G~~  418 (463)
T 3s5w_A          362 SVETYDAVILATG--YERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGFS  418 (463)
T ss_dssp             EEEEESEEEECCC--EECCC-CTTTGGGGGGBC--CCCTTSBCCBCTTBCSEEEESSCC
T ss_pred             EEEECCEEEEeeC--CCCCCccchhHHHHHHhCCcccCcccccccCCCCCCeEEEcCCC
Confidence            6789999999999  6666  4444544332244444444443211 113568888863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.62  E-value=1.1e-07  Score=94.74  Aligned_cols=104  Identities=28%  Similarity=0.257  Sum_probs=79.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||++|+.+|..|++.|.+|+++|+.+.+...                                        
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------  187 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV----------------------------------------  187 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc----------------------------------------
Confidence            4589999999999999999999999999999997643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                            + ...++.+++.+.+++.++.  ++++++|.+++.. +.         .+.+.+ ++.     ++.+|.||+|+
T Consensus       188 ------~-~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~-~~---------v~~v~~-~~~-----~i~~d~vi~a~  242 (447)
T 1nhp_A          188 ------Y-LDKEFTDVLTEEMEANNIT--IATGETVERYEGD-GR---------VQKVVT-DKN-----AYDADLVVVAV  242 (447)
T ss_dssp             ------T-CCHHHHHHHHHHHHTTTEE--EEESCCEEEEECS-SB---------CCEEEE-SSC-----EEECSEEEECS
T ss_pred             ------c-CCHHHHHHHHHHHHhCCCE--EEcCCEEEEEEcc-Cc---------EEEEEE-CCC-----EEECCEEEECc
Confidence                  0 0156778888888888887  8899999999754 21         234544 222     68999999999


Q ss_pred             CCCCCCCCCCC
Q 044575          171 GHYSYPRLPSI  181 (454)
Q Consensus       171 G~~~~p~~p~i  181 (454)
                      |  ..|+.+.+
T Consensus       243 G--~~p~~~~~  251 (447)
T 1nhp_A          243 G--VRPNTAWL  251 (447)
T ss_dssp             C--EEESCGGG
T ss_pred             C--CCCChHHH
Confidence            9  77776533

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.62  E-value=5.3e-08  Score=98.80  Aligned_cols=62  Identities=26%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575           98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY  175 (454)
Q Consensus        98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~  175 (454)
                      ..+..+.+.|.+.+.+.++.  ++++ +|+++...+++.        .+.|++.++.     ++.+|.||.|+|.++.
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~~~--------~~~v~~~~g~-----~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDERGW--------ISGVHTKQHG-----EISGDLFVDCTGFRGL  231 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSC--------EEEEEESSSC-----EEECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcCCCC--------EEEEEECCCC-----EEEcCEEEECCCcchH
Confidence            46788999999999888877  8888 999998754321        2556665543     6899999999996443

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.62  E-value=4.5e-08  Score=96.27  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=32.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~   47 (454)
                      .+||+|||||++|+++|..|++.  |.+|+|||+....
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~   73 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP   73 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            47999999999999999999999  9999999997543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.60  E-value=2.3e-07  Score=93.12  Aligned_cols=106  Identities=21%  Similarity=0.230  Sum_probs=80.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  214 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------  214 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+++.+..++.++.  ++++++|.+|+..++          ...+++.+..++...++.+|.||+|+|
T Consensus       215 ----~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~~~~D~vv~a~G  276 (470)
T 1dxl_A          215 ----T--MDAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSGD----------GVKLTVEPSAGGEQTIIEADVVLVSAG  276 (470)
T ss_dssp             ----T--SCHHHHHHHHHHHHHSSCC--EECSEEEEEEECSSS----------SEEEEEEESSSCCCEEEEESEEECCCC
T ss_pred             ----c--ccHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcCC----------eEEEEEEecCCCcceEEECCEEEECCC
Confidence                0  1157778888888888988  999999999986432          455665531112223689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       277 --~~p~~~  282 (470)
T 1dxl_A          277 --RTPFTS  282 (470)
T ss_dssp             --EEECCT
T ss_pred             --CCcCCC
Confidence              677654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.59  E-value=2.2e-07  Score=93.60  Aligned_cols=102  Identities=21%  Similarity=0.178  Sum_probs=81.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++++|||||+.|+.+|..|++.   |.+|+++++.+.+..                                       
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~---------------------------------------  227 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR---------------------------------------  227 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc---------------------------------------
Confidence            47899999999999999999999   999999999764310                                       


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                             .  -..++.+.+.+.+++.++.  ++++++|.+|+..+++         ...|++.++.     ++.+|.||+
T Consensus       228 -------~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~---------~~~v~~~~G~-----~i~~D~vv~  282 (490)
T 1fec_A          228 -------G--FDSELRKQLTEQLRANGIN--VRTHENPAKVTKNADG---------TRHVVFESGA-----EADYDVVML  282 (490)
T ss_dssp             -------T--SCHHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTS---------CEEEEETTSC-----EEEESEEEE
T ss_pred             -------c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCC---------EEEEEECCCc-----EEEcCEEEE
Confidence                   0  0156778888888888887  8999999999875432         4667766543     689999999


Q ss_pred             ccCCCCCCCCC
Q 044575          169 ATGHYSYPRLP  179 (454)
Q Consensus       169 AtG~~~~p~~p  179 (454)
                      |+|  ..|+..
T Consensus       283 a~G--~~p~~~  291 (490)
T 1fec_A          283 AIG--RVPRSQ  291 (490)
T ss_dssp             CSC--EEESCT
T ss_pred             ccC--CCcCcc
Confidence            999  677764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.59  E-value=2.7e-07  Score=93.10  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=80.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++|+|||||+.|+.+|..|++.   |.+|+++++.+.+..                                       
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~---------------------------------------  231 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR---------------------------------------  231 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc---------------------------------------
Confidence            46899999999999999999999   999999999764310                                       


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                             .  -..++.+.+.+.+++.++.  ++++++|.+|+..+++         ...|++.++.     ++.+|.||+
T Consensus       232 -------~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~---------~~~v~~~~G~-----~i~~D~vv~  286 (495)
T 2wpf_A          232 -------G--FDETIREEVTKQLTANGIE--IMTNENPAKVSLNTDG---------SKHVTFESGK-----TLDVDVVMM  286 (495)
T ss_dssp             -------T--SCHHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTS---------CEEEEETTSC-----EEEESEEEE
T ss_pred             -------c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCc---------eEEEEECCCc-----EEEcCEEEE
Confidence                   0  0156778888888888988  9999999999865432         4667766543     789999999


Q ss_pred             ccCCCCCCCCC
Q 044575          169 ATGHYSYPRLP  179 (454)
Q Consensus       169 AtG~~~~p~~p  179 (454)
                      |+|  ..|+..
T Consensus       287 a~G--~~p~~~  295 (495)
T 2wpf_A          287 AIG--RIPRTN  295 (495)
T ss_dssp             CSC--EEECCG
T ss_pred             CCC--Cccccc
Confidence            999  677753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.57  E-value=3.9e-07  Score=89.81  Aligned_cols=102  Identities=25%  Similarity=0.254  Sum_probs=81.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~-----------------------------------------  190 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR-----------------------------------------  190 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh-----------------------------------------
Confidence            578999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            ....++.+++.+..++.++.  ++++++|.++...+..         ...|++.++.     ++.+|.||+|+|
T Consensus       191 ------~~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~---------v~~v~l~dG~-----~i~aD~Vv~a~G  248 (415)
T 3lxd_A          191 ------VAGEALSEFYQAEHRAHGVD--LRTGAAMDCIEGDGTK---------VTGVRMQDGS-----VIPADIVIVGIG  248 (415)
T ss_dssp             ------TSCHHHHHHHHHHHHHTTCE--EEETCCEEEEEESSSB---------EEEEEESSSC-----EEECSEEEECSC
T ss_pred             ------hcCHHHHHHHHHHHHhCCCE--EEECCEEEEEEecCCc---------EEEEEeCCCC-----EEEcCEEEECCC
Confidence                  01267888888888989988  9999999999875432         3357776654     789999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        ..|+.
T Consensus       249 --~~p~~  253 (415)
T 3lxd_A          249 --IVPCV  253 (415)
T ss_dssp             --CEESC
T ss_pred             --CccCh
Confidence              67765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.56  E-value=4.5e-07  Score=90.84  Aligned_cols=105  Identities=19%  Similarity=0.134  Sum_probs=79.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  212 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-----------------------------------------  212 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-----------------------------------------
Confidence            478999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHH-HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFC-QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ...++.+++.+.. ++.++.  ++++++|.+|+..++          ...+++...+ +...++.+|.||+|+
T Consensus       213 -------~d~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~~~-g~~~~i~~D~vv~a~  272 (468)
T 2qae_A          213 -------LDEDVTNALVGALAKNEKMK--FMTSTKVVGGTNNGD----------SVSLEVEGKN-GKRETVTCEALLVSV  272 (468)
T ss_dssp             -------SCHHHHHHHHHHHHHHTCCE--EECSCEEEEEEECSS----------SEEEEEECC----EEEEEESEEEECS
T ss_pred             -------CCHHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcCC----------eEEEEEEcCC-CceEEEECCEEEECC
Confidence                   0156778888888 888988  999999999987532          4556655211 223478999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       273 G--~~p~~~  279 (468)
T 2qae_A          273 G--RRPFTG  279 (468)
T ss_dssp             C--EEECCT
T ss_pred             C--cccCCC
Confidence            9  777764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.56  E-value=4.6e-07  Score=90.68  Aligned_cols=104  Identities=19%  Similarity=0.213  Sum_probs=80.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  208 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP------------------------------------------  208 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+++.+..++.++.  ++++++|.+++..++          ...+++.+.  +...++.+|.||+|+|
T Consensus       209 ----~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~~--g~~~~~~~D~vv~a~G  268 (464)
T 2a8x_A          209 ----N--EDADVSKEIEKQFKKLGVT--ILTATKVESIADGGS----------QVTVTVTKD--GVAQELKAEKVLQAIG  268 (464)
T ss_dssp             ----T--SCHHHHHHHHHHHHHHTCE--EECSCEEEEEEECSS----------CEEEEEESS--SCEEEEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcCC----------eEEEEEEcC--CceEEEEcCEEEECCC
Confidence                0  1157778888888888988  999999999986532          345555411  2234789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       269 --~~p~~~  274 (464)
T 2a8x_A          269 --FAPNVE  274 (464)
T ss_dssp             --EEECCS
T ss_pred             --CCccCC
Confidence              777764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.55  E-value=3.9e-07  Score=91.17  Aligned_cols=102  Identities=24%  Similarity=0.203  Sum_probs=79.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------  203 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF------------------------------------------  203 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc------------------------------------------
Confidence            46899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  -..++.+.+.+..++.++.  ++++++|.+|+..++          ...|++.++   .. ++.+|.||+|+|
T Consensus       204 ----~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~----------~~~v~~~~G---~~-~i~~D~vv~a~G  261 (463)
T 2r9z_A          204 ----Q--FDPLLSATLAENMHAQGIE--THLEFAVAALERDAQ----------GTTLVAQDG---TR-LEGFDSVIWAVG  261 (463)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EESSCCEEEEEEETT----------EEEEEETTC---CE-EEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCC----------eEEEEEeCC---cE-EEEcCEEEECCC
Confidence                0  0146677788888888888  999999999986532          455666543   22 589999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       262 --~~p~~~  267 (463)
T 2r9z_A          262 --RAPNTR  267 (463)
T ss_dssp             --EEESCT
T ss_pred             --CCcCCC
Confidence              777764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.55  E-value=3.4e-07  Score=91.98  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  222 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR------------------------------------------  222 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  -..++.+.+.+..++.++.  ++++++|.+|+..+++.        ...|++.++   . .++.+|.||+|+|
T Consensus       223 ----~--~d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~--------~~~v~~~~G---~-~~i~~D~vv~a~G  282 (479)
T 2hqm_A          223 ----K--FDECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETD--------KLKIHMNDS---K-SIDDVDELIWTIG  282 (479)
T ss_dssp             ----T--SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CC--------CEEEEETTS---C-EEEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCc--------EEEEEECCC---c-EEEEcCEEEECCC
Confidence                0  0156777888888888988  99999999998653210        245666543   1 2789999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        ..|+.
T Consensus       283 --~~p~~  287 (479)
T 2hqm_A          283 --RKSHL  287 (479)
T ss_dssp             --EEECC
T ss_pred             --CCCcc
Confidence              77776

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.54  E-value=3.8e-07  Score=89.58  Aligned_cols=103  Identities=28%  Similarity=0.298  Sum_probs=80.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------------  180 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR----------------------------------------  180 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT----------------------------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh----------------------------------------
Confidence            3578999999999999999999999999999987643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ....++.+++.+..++.++.  ++++++|.++...++.         ...|++.++.     ++.+|.||+|+
T Consensus       181 -------~~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~---------v~~V~~~dG~-----~i~aD~Vv~a~  237 (404)
T 3fg2_P          181 -------VVTPEISSYFHDRHSGAGIR--MHYGVRATEIAAEGDR---------VTGVVLSDGN-----TLPCDLVVVGV  237 (404)
T ss_dssp             -------TSCHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTE---------EEEEEETTSC-----EEECSEEEECC
T ss_pred             -------ccCHHHHHHHHHHHHhCCcE--EEECCEEEEEEecCCc---------EEEEEeCCCC-----EEEcCEEEECc
Confidence                   01257788888888888988  8999999999865422         3346666654     78999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       238 G--~~p~~  243 (404)
T 3fg2_P          238 G--VIPNV  243 (404)
T ss_dssp             C--EEECC
T ss_pred             C--CccCH
Confidence            9  67765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.54  E-value=2.1e-07  Score=93.70  Aligned_cols=104  Identities=21%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------  222 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ------------------------------------------  222 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee-cCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE-KKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~d~vViAt  170 (454)
                          .  ...++.+++.+..++.++.  ++++++|.+++..++          ...|++.+ .+.+  .++.+|.||+|+
T Consensus       223 ----~--~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~~~~~g--~~~~~D~vv~a~  282 (482)
T 1ojt_A          223 ----G--ADRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKED----------GVYVTFEGANAPK--EPQRYDAVLVAA  282 (482)
T ss_dssp             ----T--SCHHHHHHHHHHHGGGEEE--EECSCEEEEEEEETT----------EEEEEEESSSCCS--SCEEESCEEECC
T ss_pred             ----c--cCHHHHHHHHHHHHhcCCE--EEECCEEEEEEEcCC----------eEEEEEeccCCCc--eEEEcCEEEECc
Confidence                0  1156777888888877877  899999999986532          45566654 1001  157899999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       283 G--~~p~~~  289 (482)
T 1ojt_A          283 G--RAPNGK  289 (482)
T ss_dssp             C--EEECGG
T ss_pred             C--CCcCCC
Confidence            9  777753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.54  E-value=7.4e-07  Score=89.82  Aligned_cols=105  Identities=23%  Similarity=0.219  Sum_probs=78.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  212 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-----------------------------------------  212 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----------------------------------------
Confidence            478999999999999999999999999999997743100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+..++. +.  ++++++|.+++..++          ...+++.+.+ +...++.+|.||+|+|
T Consensus       213 -------~d~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~~----------~v~v~~~~~~-G~~~~i~~D~Vi~a~G  271 (492)
T 3ic9_A          213 -------QDEEMKRYAEKTFNEE-FY--FDAKARVISTIEKED----------AVEVIYFDKS-GQKTTESFQYVLAATG  271 (492)
T ss_dssp             -------CCHHHHHHHHHHHHTT-SE--EETTCEEEEEEECSS----------SEEEEEECTT-CCEEEEEESEEEECSC
T ss_pred             -------CCHHHHHHHHHHHhhC-cE--EEECCEEEEEEEcCC----------EEEEEEEeCC-CceEEEECCEEEEeeC
Confidence                   0146667777766654 65  889999999987643          4456554211 3234789999999999


Q ss_pred             CCCCCCCCC
Q 044575          172 HYSYPRLPS  180 (454)
Q Consensus       172 ~~~~p~~p~  180 (454)
                        ..|+...
T Consensus       272 --~~p~~~~  278 (492)
T 3ic9_A          272 --RKANVDK  278 (492)
T ss_dssp             --CEESCSS
T ss_pred             --CccCCCC
Confidence              7777653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.53  E-value=1.1e-06  Score=88.38  Aligned_cols=106  Identities=25%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||+|+.|+.+|..|++.|.+|+++++.. +.                                    +      
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l------------------------------------~------  223 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-VL------------------------------------R------  223 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-SS------------------------------------T------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-CC------------------------------------c------
Confidence            4689999999999999999999999999999742 10                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+++..+++         ...|++.++.++...++.+|.||+|+|
T Consensus       224 ----~--~d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~~~~~~~~~~~~D~vi~a~G  286 (483)
T 3dgh_A          224 ----G--FDQQMAELVAASMEERGIP--FLRKTVPLSVEKQDDG---------KLLVKYKNVETGEESEDVYDTVLWAIG  286 (483)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTS---------CEEEEEEETTTCCEEEEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCC---------cEEEEEecCCCCceeEEEcCEEEECcc
Confidence                0  0157778888888888988  9999999999875443         456777776444556789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       287 --~~p~~~  292 (483)
T 3dgh_A          287 --RKGLVD  292 (483)
T ss_dssp             --EEECCG
T ss_pred             --cccCcC
Confidence              677654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.52  E-value=4.2e-07  Score=89.37  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------------------------------  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------------------------------
Confidence            578999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            ....++.+++.+..++.++.  ++++++|.+++ .            . .|++.++.     ++.+|.||+|+|
T Consensus       184 ------~~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~-~------------~-~v~~~~g~-----~i~~D~vi~a~G  236 (408)
T 2gqw_A          184 ------AAPATLADFVARYHAAQGVD--LRFERSVTGSV-D------------G-VVLLDDGT-----RIAADMVVVGIG  236 (408)
T ss_dssp             ------TSCHHHHHHHHHHHHHTTCE--EEESCCEEEEE-T------------T-EEEETTSC-----EEECSEEEECSC
T ss_pred             ------ccCHHHHHHHHHHHHHcCcE--EEeCCEEEEEE-C------------C-EEEECCCC-----EEEcCEEEECcC
Confidence                  01156778888888888988  99999999987 2            3 46665543     789999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        ..|+.
T Consensus       237 --~~p~~  241 (408)
T 2gqw_A          237 --VLAND  241 (408)
T ss_dssp             --EEECC
T ss_pred             --CCccH
Confidence              67764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.52  E-value=3.3e-07  Score=90.21  Aligned_cols=102  Identities=19%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....                                       
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~---------------------------------------  182 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV---------------------------------------  182 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH---------------------------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh---------------------------------------
Confidence            35789999999999999999999999999999976431000                                       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ...++.+.+.+..++.++.  ++++++|.+++..+ .         ...|++.++.     ++.+|.||+|+
T Consensus       183 --------~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~---------~~~v~~~dg~-----~i~aD~Vv~a~  237 (410)
T 3ef6_A          183 --------LGRRIGAWLRGLLTELGVQ--VELGTGVVGFSGEG-Q---------LEQVMASDGR-----SFVADSALICV  237 (410)
T ss_dssp             --------HCHHHHHHHHHHHHHHTCE--EECSCCEEEEECSS-S---------CCEEEETTSC-----EEECSEEEECS
T ss_pred             --------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEeccC-c---------EEEEEECCCC-----EEEcCEEEEee
Confidence                    0156778888888888988  89999999997643 1         4567776654     78999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       238 G--~~p~~  243 (410)
T 3ef6_A          238 G--AEPAD  243 (410)
T ss_dssp             C--EEECC
T ss_pred             C--CeecH
Confidence            9  67765

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.52  E-value=8.8e-08  Score=99.50  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=32.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc------CCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~------g~~v~vie~~~~~   47 (454)
                      .+||||||||.||++||..|++.      |.+|+|+||....
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            48999999999999999999997      9999999997643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.52  E-value=9.2e-07  Score=88.84  Aligned_cols=108  Identities=14%  Similarity=0.077  Sum_probs=81.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+.                                    +      
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------------------------~------  224 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL------------------------------------R------  224 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC------------------------------------T------
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc------------------------------------c------
Confidence            4789999999999999999999999999999876431                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe--EEEEEeCEEEEc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK--VVEEVFDAVVVA  169 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~d~vViA  169 (454)
                          .  ...++.+++.+..++.++.  ++++++|.+++..+++.        ...+.+.+...+.  ..++.+|.||+|
T Consensus       225 ----~--~d~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~--------~~~v~~~~~~~g~~~g~~~~~D~vi~a  288 (478)
T 3dk9_A          225 ----S--FDSMISTNCTEELENAGVE--VLKFSQVKEVKKTLSGL--------EVSMVTAVPGRLPVMTMIPDVDCLLWA  288 (478)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EETTEEEEEEEECSSSE--------EEEEEECCTTSCCEEEEEEEESEEEEC
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCc--------EEEEEEccCCCCcccceEEEcCEEEEe
Confidence                0  1156778888888888988  89999999998754320        2445555432122  257899999999


Q ss_pred             cCCCCCCCCC
Q 044575          170 TGHYSYPRLP  179 (454)
Q Consensus       170 tG~~~~p~~p  179 (454)
                      +|  ..|+..
T Consensus       289 ~G--~~p~~~  296 (478)
T 3dk9_A          289 IG--RVPNTK  296 (478)
T ss_dssp             SC--EEESCT
T ss_pred             ec--cccCCC
Confidence            99  677664

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.52  E-value=5.4e-07  Score=91.07  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=79.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  219 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP------------------------------------------  219 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+.+++.++.  ++++++|.+|+..++          ...|+..++.     ++.+|.||+|+|
T Consensus       220 ----~--~d~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~----------~v~v~~~~g~-----~i~aD~Vv~a~G  276 (499)
T 1xdi_A          220 ----Y--EDADAALVLEESFAERGVR--LFKNARAASVTRTGA----------GVLVTMTDGR-----TVEGSHALMTIG  276 (499)
T ss_dssp             ----C--SSHHHHHHHHHHHHHTTCE--EETTCCEEEEEECSS----------SEEEEETTSC-----EEEESEEEECCC
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCC----------EEEEEECCCc-----EEEcCEEEECCC
Confidence                0  1156778888888888988  999999999986532          4555544433     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       277 --~~p~~~  282 (499)
T 1xdi_A          277 --SVPNTS  282 (499)
T ss_dssp             --EEECCS
T ss_pred             --CCcCCC
Confidence              677764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.52  E-value=2.1e-07  Score=92.73  Aligned_cols=38  Identities=34%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVG   48 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~G   48 (454)
                      ..+||+|||||++|+++|.+|++.| .+|+|||++..+|
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~   60 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG   60 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC
Confidence            4589999999999999999999999 9999999944443

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.51  E-value=5.3e-07  Score=89.29  Aligned_cols=103  Identities=21%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------------------  187 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER----------------------------------------  187 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT----------------------------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc----------------------------------------
Confidence            3578999999999999999999999999999987642100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE--cCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM--LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                             ....++.+++.+..++.++.  ++++++|.+++.  .++.         -..|++.++.     ++.+|.||+
T Consensus       188 -------~~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~---------v~~v~~~~G~-----~i~~D~Vv~  244 (431)
T 1q1r_A          188 -------VTAPPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQK---------VTAVLCEDGT-----RLPADLVIA  244 (431)
T ss_dssp             -------TSCHHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTCC---------EEEEEETTSC-----EEECSEEEE
T ss_pred             -------hhhHHHHHHHHHHHHhCCeE--EEeCCEEEEEEeccCCCc---------EEEEEeCCCC-----EEEcCEEEE
Confidence                   01156777888888888988  899999999986  3221         2356666543     789999999


Q ss_pred             ccCCCCCCCC
Q 044575          169 ATGHYSYPRL  178 (454)
Q Consensus       169 AtG~~~~p~~  178 (454)
                      |+|  ..|+.
T Consensus       245 a~G--~~p~~  252 (431)
T 1q1r_A          245 GIG--LIPNC  252 (431)
T ss_dssp             CCC--EEECC
T ss_pred             CCC--CCcCc
Confidence            999  66664

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.51  E-value=3e-07  Score=92.39  Aligned_cols=101  Identities=23%  Similarity=0.303  Sum_probs=77.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------  224 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI----------------------------------------  224 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS----------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc----------------------------------------
Confidence            4589999999999999999999999999999987643110                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ...++.+++.+.+++.++.  ++++++|.+++..+ .         .+.+.+. +.     ++.+|.||+|+
T Consensus       225 --------~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~---------v~~v~~~-~~-----~i~~D~vi~a~  278 (480)
T 3cgb_A          225 --------YDGDMAEYIYKEADKHHIE--ILTNENVKAFKGNE-R---------VEAVETD-KG-----TYKADLVLVSV  278 (480)
T ss_dssp             --------SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-B---------EEEEEET-TE-----EEECSEEEECS
T ss_pred             --------CCHHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCC-c---------EEEEEEC-CC-----EEEcCEEEECc
Confidence                    0156778888888888988  88999999998642 1         2334442 21     68999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+.+
T Consensus       279 G--~~p~~~  285 (480)
T 3cgb_A          279 G--VKPNTD  285 (480)
T ss_dssp             C--EEESCG
T ss_pred             C--CCcChH
Confidence            9  666654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.50  E-value=1.6e-06  Score=87.33  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=82.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++...+                                            
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------------------  220 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL--------------------------------------------  220 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS--------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc--------------------------------------------
Confidence            468999999999999999999999999999985310                                            


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.  -..++.+.+.+..++.++.  +++++.|.+|...+++         ...|++.+..+++..++.+|.||+|+|
T Consensus       221 ---~~--~d~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~---------~~~v~~~~~~~g~~~~~~~D~vi~a~G  284 (488)
T 3dgz_A          221 ---RG--FDQQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTN---------QLQVTWEDHASGKEDTGTFDTVLWAIG  284 (488)
T ss_dssp             ---TT--SCHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTS---------CEEEEEEETTTTEEEEEEESEEEECSC
T ss_pred             ---cc--CCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCC---------cEEEEEEeCCCCeeEEEECCEEEEccc
Confidence               00  0157778888888888988  8999999999875433         566777664334445688999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       285 --~~p~~~  290 (488)
T 3dgz_A          285 --RVPETR  290 (488)
T ss_dssp             --EEESCG
T ss_pred             --CCcccC
Confidence              677654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.50  E-value=6.6e-07  Score=89.75  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=80.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      .++|+|||+|+.|+.+|..|++. |.+|+++++.+.+...                                        
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~----------------------------------------  198 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG----------------------------------------  198 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc----------------------------------------
Confidence            47899999999999999999999 9999999987643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           .  ...++.+.+.+.+++.++.  ++++++|.+|+..++          ..+|.+.++.     ++.+|.||+|+
T Consensus       199 -----~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~i~aD~Vv~a~  254 (472)
T 3iwa_A          199 -----F--TSKSLSQMLRHDLEKNDVV--VHTGEKVVRLEGENG----------KVARVITDKR-----TLDADLVILAA  254 (472)
T ss_dssp             -----T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSS----------BEEEEEESSC-----EEECSEEEECS
T ss_pred             -----c--cCHHHHHHHHHHHHhcCCE--EEeCCEEEEEEccCC----------eEEEEEeCCC-----EEEcCEEEECC
Confidence                 0  1157778888888888988  899999999987432          5557776654     78999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       255 G--~~p~~  260 (472)
T 3iwa_A          255 G--VSPNT  260 (472)
T ss_dssp             C--EEECC
T ss_pred             C--CCcCH
Confidence            9  66664

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.49  E-value=1e-06  Score=88.48  Aligned_cols=104  Identities=24%  Similarity=0.272  Sum_probs=81.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  217 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP------------------------------------------  217 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+++..++          ...+++.+++ + ..++.+|.||+|+|
T Consensus       218 ----~--~~~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~~----------~~~v~~~~~~-g-~~~~~~D~vi~a~G  277 (476)
T 3lad_A          218 ----A--VDEQVAKEAQKILTKQGLK--ILLGARVTGTEVKNK----------QVTVKFVDAE-G-EKSQAFDKLIVAVG  277 (476)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTEE--EEETCEEEEEEECSS----------CEEEEEESSS-E-EEEEEESEEEECSC
T ss_pred             ----c--cCHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCC----------EEEEEEEeCC-C-cEEEECCEEEEeeC
Confidence                0  1156778888888888887  899999999987543          4556666543 2 34789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       278 --~~p~~~  283 (476)
T 3lad_A          278 --RRPVTT  283 (476)
T ss_dssp             --EEECCT
T ss_pred             --CcccCC
Confidence              677664

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.48  E-value=7.7e-07  Score=89.55  Aligned_cols=101  Identities=21%  Similarity=0.250  Sum_probs=80.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+..|..|++.|.+|+++++.+.+..                                          
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  228 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR------------------------------------------  228 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc------------------------------------------
Confidence            57899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+.+++.++.  ++++++|.+++..++          .+.|++.++.     ++.+|.||+|+|
T Consensus       229 ----~--~~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~~----------~v~v~~~~g~-----~i~aD~Vi~A~G  285 (484)
T 3o0h_A          229 ----N--FDYDLRQLLNDAMVAKGIS--IIYEATVSQVQSTEN----------CYNVVLTNGQ-----TICADRVMLATG  285 (484)
T ss_dssp             ----T--SCHHHHHHHHHHHHHHTCE--EESSCCEEEEEECSS----------SEEEEETTSC-----EEEESEEEECCC
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeCC----------EEEEEECCCc-----EEEcCEEEEeeC
Confidence                0  0156777888888888988  899999999987543          5677776554     789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       286 --~~p~~~  291 (484)
T 3o0h_A          286 --RVPNTT  291 (484)
T ss_dssp             --EEECCT
T ss_pred             --CCcCCC
Confidence              677655

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.48  E-value=1.1e-06  Score=87.56  Aligned_cols=103  Identities=25%  Similarity=0.248  Sum_probs=79.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++++|||+|+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------  185 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK----------------------------------------  185 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------------------------------------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc----------------------------------------
Confidence            3578999999999999999999999999999997643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           .  -..++.+.+.+.+++.++.  ++++++|.+++..++          +..|.+.+   +   ++.+|.||+|+
T Consensus       186 -----~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~----------~v~v~~~~---g---~i~aD~Vv~A~  240 (452)
T 3oc4_A          186 -----Y--FDKEMVAEVQKSLEKQAVI--FHFEETVLGIEETAN----------GIVLETSE---Q---EISCDSGIFAL  240 (452)
T ss_dssp             -----T--CCHHHHHHHHHHHHTTTEE--EEETCCEEEEEECSS----------CEEEEESS---C---EEEESEEEECS
T ss_pred             -----c--CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEccCC----------eEEEEECC---C---EEEeCEEEECc
Confidence                 0  0157778888888888887  899999999986433          44555532   1   68999999999


Q ss_pred             CCCCCCCCCC
Q 044575          171 GHYSYPRLPS  180 (454)
Q Consensus       171 G~~~~p~~p~  180 (454)
                      |  ..|+...
T Consensus       241 G--~~p~~~~  248 (452)
T 3oc4_A          241 N--LHPQLAY  248 (452)
T ss_dssp             C--CBCCCSS
T ss_pred             C--CCCChHH
Confidence            9  7777653

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.48  E-value=8e-07  Score=93.92  Aligned_cols=40  Identities=50%  Similarity=0.860  Sum_probs=37.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      ..+||+|||||++|+++|..|++.|++|+|+|+++.+||.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr  374 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR  374 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence            3589999999999999999999999999999999999883

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.47  E-value=6.8e-07  Score=89.54  Aligned_cols=99  Identities=22%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                    |      
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------------------------~------  213 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF------------------------------------R------  213 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT------------------------------------T------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC------------------------------------C------
Confidence            4789999999999999999999999999999976430                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+.+++.++.  ++++++|.+++..+.          .+.|.+. +.     ++.+|.||+|+|
T Consensus       214 -------~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~----------~~~v~~~-~~-----~i~aD~Vv~a~G  268 (467)
T 1zk7_A          214 -------EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHMDG----------EFVLTTT-HG-----ELRADKLLVATG  268 (467)
T ss_dssp             -------SCHHHHHHHHHHHHHTTCE--EETTCCEEEEEEETT----------EEEEEET-TE-----EEEESEEEECSC
T ss_pred             -------CCHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCC----------EEEEEEC-Cc-----EEEcCEEEECCC
Confidence                   1156778888888888988  899999999986532          4556554 21     689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       269 --~~p~~~  274 (467)
T 1zk7_A          269 --RTPNTR  274 (467)
T ss_dssp             --EEESCT
T ss_pred             --CCcCCC
Confidence              667653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.47  E-value=8.4e-08  Score=97.25  Aligned_cols=41  Identities=41%  Similarity=0.614  Sum_probs=38.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~   52 (454)
                      .+||+|||||++||+||..|++. |++|+|+|+++++||.+.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence            48999999999999999999885 999999999999999765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.47  E-value=7.9e-07  Score=91.29  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=79.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+.                                    +      
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------------------------~------  188 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM------------------------------------T------  188 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC------------------------------------T------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc------------------------------------h------
Confidence            4689999999999999999999999999999976431                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCcc----------ccCCcCCcEEEEEeecCCCeEEEE
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGEL----------IIGNDLIKWVVKSKEKKADKVVEE  161 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~  161 (454)
                            ....++.+.+.+..++.++.  ++++++|.+++.......          .....+ ...+...++.     ++
T Consensus       189 ------~~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~-----~i  254 (565)
T 3ntd_A          189 ------PVDREMAGFAHQAIRDQGVD--LRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKG-HLSLTLSNGE-----LL  254 (565)
T ss_dssp             ------TSCHHHHHHHHHHHHHTTCE--EEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTC-EEEEEETTSC-----EE
T ss_pred             ------hcCHHHHHHHHHHHHHCCCE--EEeCCeEEEEeccccccccccccccccccccCCC-cEEEEEcCCC-----EE
Confidence                  01157778888888888988  899999999986310000          000011 4556655443     78


Q ss_pred             EeCEEEEccCCCCCCCC
Q 044575          162 VFDAVVVATGHYSYPRL  178 (454)
Q Consensus       162 ~~d~vViAtG~~~~p~~  178 (454)
                      .+|.||+|+|  ..|+.
T Consensus       255 ~~D~vi~a~G--~~p~~  269 (565)
T 3ntd_A          255 ETDLLIMAIG--VRPET  269 (565)
T ss_dssp             EESEEEECSC--EEECC
T ss_pred             EcCEEEECcC--Cccch
Confidence            9999999999  67764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.47  E-value=7.4e-07  Score=84.28  Aligned_cols=106  Identities=21%  Similarity=0.225  Sum_probs=77.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+                                           
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------------------------------------  180 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-------------------------------------------  180 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-------------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc-------------------------------------------
Confidence            3578999999999999999999999999999986532                                           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC-CeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA-DKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~d~vViA  169 (454)
                             .....+.+.+.+.+++.++.  +.++++|.+++..++.         ...|++.+..+ +...++.+|.||+|
T Consensus       181 -------~~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~---------v~~v~~~~~~~~g~~~~i~~D~vv~a  242 (320)
T 1trb_A          181 -------RAEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMG---------VTGVRLRDTQNSDNIESLDVAGLFVA  242 (320)
T ss_dssp             -------CCCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSS---------EEEEEEECCTTCCCCEEEECSEEEEC
T ss_pred             -------ccCHHHHHHHHHhcccCCeE--EEcCceeEEEEcCCCc---------eEEEEEEeccCCCceEEEEcCEEEEE
Confidence                   00144556666666667777  8889999999865422         33466654211 22347899999999


Q ss_pred             cCCCCCCCCC
Q 044575          170 TGHYSYPRLP  179 (454)
Q Consensus       170 tG~~~~p~~p  179 (454)
                      +|  ..|+..
T Consensus       243 ~G--~~p~~~  250 (320)
T 1trb_A          243 IG--HSPNTA  250 (320)
T ss_dssp             SC--EEESCG
T ss_pred             eC--CCCChH
Confidence            99  666654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.46  E-value=2.8e-07  Score=91.26  Aligned_cols=87  Identities=21%  Similarity=0.323  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc--Ccc-----------------chhhhccCCCeEEcCceeEEe
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI--SEG-----------------LSKVISKHNNLHLHPQIDCLR  264 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~--~~~-----------------~~~~l~~~~~i~~~~~v~~v~  264 (454)
                      |+|||||+|+.|+.+|..|++.+  .+||++++++..  .+.                 +.+.+.+.+--+....+++|+
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            78999999999999999999876  589999998753  111                 122232222123455788887


Q ss_pred             cCC-cEEEeCCCEEeeceEEEccCcccCC
Q 044575          265 EDG-RVTFVDGCWVTADTILYCTGYSYSF  292 (454)
Q Consensus       265 ~~~-~v~~~dG~~i~~D~vI~atG~~~~~  292 (454)
                      .++ .|++++|+++++|.+|+|||.++.+
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG~~~~~  111 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATGPKLVF  111 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCCCEEEC
T ss_pred             CCCCEEEECCCCEEECCEEEEeCCCCccC
Confidence            554 7889999999999999999987653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.46  E-value=1.2e-07  Score=92.90  Aligned_cols=45  Identities=29%  Similarity=0.472  Sum_probs=41.5

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCccccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~~   53 (454)
                      |...+||+|||||++|++||..|++. |.+|+|+|+++.+||.+..
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~   49 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence            45568999999999999999999999 9999999999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.45  E-value=1e-06  Score=89.32  Aligned_cols=100  Identities=19%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+..|..+++.|.+|+|+++...+                                     |.     
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L-------------------------------------~~-----  260 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL-------------------------------------RG-----  260 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS-------------------------------------TT-----
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc-------------------------------------cc-----
Confidence            478999999999999999999999999999874311                                     00     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ..+++.+.+.+..++.++.  +++++.|.++...++          ...|.+.++.     ++.+|.|++|+|
T Consensus       261 -------~D~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~~----------~~~v~~~~~~-----~~~~D~vLvAvG  316 (542)
T 4b1b_A          261 -------FDQQCAVKVKLYMEEQGVM--FKNGILPKKLTKMDD----------KILVEFSDKT-----SELYDTVLYAIG  316 (542)
T ss_dssp             -------SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEEETT----------EEEEEETTSC-----EEEESEEEECSC
T ss_pred             -------cchhHHHHHHHHHHhhcce--eecceEEEEEEecCC----------eEEEEEcCCC-----eEEEEEEEEccc
Confidence                   1167888889999998987  899999999987654          4556665544     678999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        .+|+.-
T Consensus       317 --R~Pnt~  322 (542)
T 4b1b_A          317 --RKGDID  322 (542)
T ss_dssp             --EEESCG
T ss_pred             --ccCCcc
Confidence              777764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.45  E-value=4.6e-07  Score=89.89  Aligned_cols=97  Identities=18%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..+++.|.+|+++++.+.+....                                        
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~----------------------------------------  186 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM----------------------------------------  186 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS----------------------------------------
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc----------------------------------------
Confidence            4689999999999999999999999999999976431000                                        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                              ..++.+.+.+..++.++.  ++++++|.+++.              ..+++.+++     ++.+|.|++|+|
T Consensus       187 --------d~~~~~~~~~~l~~~gV~--i~~~~~v~~~~~--------------~~v~~~~g~-----~~~~D~vl~a~G  237 (437)
T 4eqs_A          187 --------DADMNQPILDELDKREIP--YRLNEEINAING--------------NEITFKSGK-----VEHYDMIIEGVG  237 (437)
T ss_dssp             --------CGGGGHHHHHHHHHTTCC--EEESCCEEEEET--------------TEEEETTSC-----EEECSEEEECCC
T ss_pred             --------cchhHHHHHHHhhccceE--EEeccEEEEecC--------------CeeeecCCe-----EEeeeeEEEEec
Confidence                    134556677777888888  999999988762              236666655     789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       238 --~~Pn~~  243 (437)
T 4eqs_A          238 --THPNSK  243 (437)
T ss_dssp             --EEESCG
T ss_pred             --eecCcH
Confidence              777653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.45  E-value=7.8e-07  Score=89.65  Aligned_cols=102  Identities=23%  Similarity=0.294  Sum_probs=77.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------  232 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG----------------------------------------  232 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------------------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh----------------------------------------
Confidence            3578999999999999999999999999999997643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           .  ...++.+.+.+..++.++.  ++++++|.+|+.. +.         ...|.+ ++.     ++.+|.||+|+
T Consensus       233 -----~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~-~~---------v~~v~~-~g~-----~i~~D~Vi~a~  287 (490)
T 2bc0_A          233 -----Y--YDRDLTDLMAKNMEEHGIQ--LAFGETVKEVAGN-GK---------VEKIIT-DKN-----EYDVDMVILAV  287 (490)
T ss_dssp             -----T--SCHHHHHHHHHHHHTTTCE--EEETCCEEEEECS-SS---------CCEEEE-SSC-----EEECSEEEECC
T ss_pred             -----H--HHHHHHHHHHHHHHhCCeE--EEeCCEEEEEEcC-Cc---------EEEEEE-CCc-----EEECCEEEECC
Confidence                 0  1156778888888888888  9999999999752 11         122444 333     68999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  .+|+.+
T Consensus       288 G--~~p~~~  294 (490)
T 2bc0_A          288 G--FRPNTT  294 (490)
T ss_dssp             C--EEECCG
T ss_pred             C--CCcChH
Confidence            9  777764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.45  E-value=9e-07  Score=88.23  Aligned_cols=101  Identities=19%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  187 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK-----------------------------------------  187 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh-----------------------------------------
Confidence            578999999999999999999999999999987643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+++..++          +.. +.+ ++.     ++.+|.||+|+
T Consensus       188 ----~--~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~----------~v~~v~~-~g~-----~i~~D~vv~a~  243 (452)
T 2cdu_A          188 ----Y--FDKEFTDILAKDYEAHGVN--LVLGSKVAAFEEVDD----------EIITKTL-DGK-----EIKSDIAILCI  243 (452)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EEESSCEEEEEEETT----------EEEEEET-TSC-----EEEESEEEECC
T ss_pred             ----h--hhhhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCCC----------eEEEEEe-CCC-----EEECCEEEECc
Confidence                0  1156778888888888988  999999999986322          332 322 332     68999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       244 G--~~p~~~  250 (452)
T 2cdu_A          244 G--FRPNTE  250 (452)
T ss_dssp             C--EEECCG
T ss_pred             C--CCCCHH
Confidence            9  777754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.43  E-value=1.3e-06  Score=88.63  Aligned_cols=102  Identities=20%  Similarity=0.220  Sum_probs=79.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------------------  251 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------------------------------------------  251 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-------------------------------------------
Confidence            7899999999999999999999999999999764310                                           


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCc---EEEEEeecCCCeEEEEEeCEEEEc
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIK---WVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         .  ...++.+++.+.+++.++.  ++++++|.+|+..+++         .   +.|++.++    ..++.+|.||+|
T Consensus       252 ---~--~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~---------~v~~~~v~~~~G----~~~i~aD~Vv~A  311 (523)
T 1mo9_A          252 ---I--KDNETRAYVLDRMKEQGME--IISGSNVTRIEEDANG---------RVQAVVAMTPNG----EMRIETDFVFLG  311 (523)
T ss_dssp             ---C--CSHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTS---------BEEEEEEEETTE----EEEEECSCEEEC
T ss_pred             ---c--ccHHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCC---------ceEEEEEEECCC----cEEEEcCEEEEC
Confidence               0  1157778888888888988  9999999999864332         2   55665432    126899999999


Q ss_pred             cCCCCCCCCC
Q 044575          170 TGHYSYPRLP  179 (454)
Q Consensus       170 tG~~~~p~~p  179 (454)
                      +|  ..|+..
T Consensus       312 ~G--~~p~~~  319 (523)
T 1mo9_A          312 LG--EQPRSA  319 (523)
T ss_dssp             CC--CEECCH
T ss_pred             cC--CccCCc
Confidence            99  677653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.43  E-value=1.5e-07  Score=90.79  Aligned_cols=44  Identities=41%  Similarity=0.679  Sum_probs=40.7

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-CCCCccccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-HDVGGQWLY   53 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-~~~GG~w~~   53 (454)
                      ...++|+|||||++||+||..|.+.|++|+|+|++ +.+||.|..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t   86 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT   86 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence            44689999999999999999999999999999999 999998863

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.43  E-value=1e-07  Score=96.32  Aligned_cols=40  Identities=43%  Similarity=0.565  Sum_probs=31.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ++|||||||++||+||..|++.|++|+|+|+++.+||...
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence            7899999999999999999999999999999999999754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.41  E-value=7.9e-07  Score=88.24  Aligned_cols=89  Identities=19%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh---hcCeEEEecccCCc--Cc-----------------cchhhhccC-CCeEEcCceeE
Q 044575          206 EVVVVVGNSLSGQDISMELVE---VAKEVHLSAKSLNI--SE-----------------GLSKVISKH-NNLHLHPQIDC  262 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~---~~~~V~l~~r~~~~--~~-----------------~~~~~l~~~-~~i~~~~~v~~  262 (454)
                      ++|+|||||++|+.+|..|++   .+.+|+++++.+..  .+                 .+.+.+.+. .++ ....++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~-~~~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHF-IAQSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEE-ECSCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEE-EEeEEEE
Confidence            689999999999999999999   78899999998754  11                 112223322 234 3568888


Q ss_pred             EecCC-cEEEeCCCEEeeceEEEccCcccCCcCC
Q 044575          263 LREDG-RVTFVDGCWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       263 v~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l  295 (454)
                      ++.++ .|.+.+|+++.+|.+|+|||.+|+.+-+
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCcccC
Confidence            87553 6888899899999999999999876544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.41  E-value=9.7e-07  Score=91.33  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=37.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      |...+||+|||||++|+++|..|++.|++|+|||+.+..||.+
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            4456899999999999999999999999999999998888754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.41  E-value=2.1e-07  Score=92.91  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=41.5

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      |+..+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            456689999999999999999999999999999999999998763

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.39  E-value=5.7e-07  Score=87.09  Aligned_cols=93  Identities=22%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------------------------------------------  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-------------------------------------------
Confidence            7899999999999999999999999999999764311                                           


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                            -..++.+++.+..++.++.  +.++++|.+++.             . .|++.++      ++.+|.||+|+| 
T Consensus       181 ------~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~-------------~-~v~~~~g------~i~~D~vi~a~G-  231 (367)
T 1xhc_A          181 ------LDEELSNMIKDMLEETGVK--FFLNSELLEANE-------------E-GVLTNSG------FIEGKVKICAIG-  231 (367)
T ss_dssp             ------CCHHHHHHHHHHHHHTTEE--EECSCCEEEECS-------------S-EEEETTE------EEECSCEEEECC-
T ss_pred             ------CCHHHHHHHHHHHHHCCCE--EEcCCEEEEEEe-------------e-EEEECCC------EEEcCEEEECcC-
Confidence                  1157778888888888888  889999998861             1 2555432      288999999999 


Q ss_pred             CCCCCC
Q 044575          173 YSYPRL  178 (454)
Q Consensus       173 ~~~p~~  178 (454)
                       ..|+.
T Consensus       232 -~~p~~  236 (367)
T 1xhc_A          232 -IVPNV  236 (367)
T ss_dssp             -EEECC
T ss_pred             -CCcCH
Confidence             77775

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.39  E-value=2.1e-07  Score=90.48  Aligned_cols=43  Identities=28%  Similarity=0.557  Sum_probs=40.3

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ...+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccc
Confidence            3468999999999999999999999999999999999999987

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.39  E-value=5.3e-07  Score=88.37  Aligned_cols=91  Identities=16%  Similarity=0.119  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc--Ccc-----------------chhhhccCCCeEEcCceeE
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI--SEG-----------------LSKVISKHNNLHLHPQIDC  262 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~--~~~-----------------~~~~l~~~~~i~~~~~v~~  262 (454)
                      .||+|||||+|+.|+-+|..|.+.+  .+|+++++++..  .+.                 +..+.....+ +....++.
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~-~i~~~v~~   79 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQ-VVHDSALG   79 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCE-EECSCEEE
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCE-EEEeEEEE
Confidence            3799999999999999999998876  489999987753  111                 1111111223 34567888


Q ss_pred             EecCC-cEEEeCCCEEeeceEEEccCcccCCcCC
Q 044575          263 LREDG-RVTFVDGCWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       263 v~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l  295 (454)
                      ++.+. .|++.+|+++++|.+|+|||.+++.+-+
T Consensus        80 id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           80 IDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             EEccCcEEEecccceeecceeeeccCCccccCCc
Confidence            87554 6888899999999999999999875533

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.39  E-value=1.6e-06  Score=86.72  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||+|+.|+.+|..+++.|.+|+++++.+.+..                                          
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~------------------------------------------  207 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS------------------------------------------  207 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence            57899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE-EeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK-SKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~d~vViAt  170 (454)
                          .  ...++.+.+.+.+++.++.  ++++++|.+++..+++         ...|+ +.++      ++.+|.||+|+
T Consensus       208 ----~--~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~~g------~i~aD~Vv~a~  264 (463)
T 4dna_A          208 ----R--FDQDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADG---------RRVATTMKHG------EIVADQVMLAL  264 (463)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTS---------CEEEEESSSC------EEEESEEEECS
T ss_pred             ----c--cCHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCC---------EEEEEEcCCC------eEEeCEEEEee
Confidence                0  0157778888888888988  8999999999876432         34555 4332      28899999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       265 G--~~p~~~  271 (463)
T 4dna_A          265 G--RMPNTN  271 (463)
T ss_dssp             C--EEESCT
T ss_pred             C--cccCCC
Confidence            9  677655

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.38  E-value=3.7e-06  Score=85.29  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=79.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.. +.                                           
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~l-------------------------------------------  245 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------------------  245 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SS-------------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc-cc-------------------------------------------
Confidence            4679999999999999999999999999999742 10                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.  -..++.+.+.+..++.++.  +.++++|.+|...+++.     .+ ...++....++++..++.+|.||+|+|
T Consensus       246 ---~~--~d~~~~~~~~~~l~~~GV~--v~~~~~v~~v~~~~~~~-----~~-~~~v~~~~~~g~~~~~~~~D~vi~a~G  312 (519)
T 3qfa_A          246 ---RG--FDQDMANKIGEHMEEHGIK--FIRQFVPIKVEQIEAGT-----PG-RLRVVAQSTNSEEIIEGEYNTVMLAIG  312 (519)
T ss_dssp             ---TT--SCHHHHHHHHHHHHHTTCE--EEESEEEEEEEEEECCT-----TC-EEEEEEEESSSSCEEEEEESEEEECSC
T ss_pred             ---cc--CCHHHHHHHHHHHHHCCCE--EEeCCeEEEEEEccCCC-----Cc-eEEEEEEECCCcEEEEEECCEEEEecC
Confidence               00  0167788888888888988  88999888887654210     01 445555443323345678999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       313 --~~p~~~  318 (519)
T 3qfa_A          313 --RDACTR  318 (519)
T ss_dssp             --EEESCS
T ss_pred             --CcccCC
Confidence              777654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.35  E-value=3.4e-07  Score=90.45  Aligned_cols=42  Identities=38%  Similarity=0.733  Sum_probs=39.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~   52 (454)
                      ..+||+|||||++||+||..|++.| .+|+|+|+++.+||.+.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~   47 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCH   47 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccc
Confidence            4579999999999999999999999 89999999999999876

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.35  E-value=2.8e-07  Score=93.68  Aligned_cols=42  Identities=43%  Similarity=0.639  Sum_probs=39.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ..+||+|||||+|||+||..|++.|++|+|+|+++.+||...
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~   44 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY   44 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcee
Confidence            357999999999999999999999999999999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.35  E-value=3.1e-07  Score=92.52  Aligned_cols=45  Identities=42%  Similarity=0.664  Sum_probs=40.7

Q ss_pred             hccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575            8 QCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus         8 ~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ++...+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         7 ~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   51 (489)
T 2jae_A            7 KVKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW   51 (489)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred             cccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCcee
Confidence            345568999999999999999999999999999999999999753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.35  E-value=7.9e-07  Score=86.61  Aligned_cols=90  Identities=9%  Similarity=0.157  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc---Cccchhhh-----------------c-cCCCeEEcCceeEEe
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI---SEGLSKVI-----------------S-KHNNLHLHPQIDCLR  264 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~---~~~~~~~l-----------------~-~~~~i~~~~~v~~v~  264 (454)
                      -+|+|||+|+.|+.+|..|...+.+|+++++.+.+   .+.+.+.+                 . ...+++.+..|++++
T Consensus        10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id   89 (385)
T 3klj_A           10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID   89 (385)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence            47999999999999999998888999999998764   12222211                 1 123566778899997


Q ss_pred             cCC-cEEEeCCCEEeeceEEEccCcccCCcCC
Q 044575          265 EDG-RVTFVDGCWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       265 ~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l  295 (454)
                      .+. .|++.+|+++.+|.+|+|||.+|..|-+
T Consensus        90 ~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i  121 (385)
T 3klj_A           90 PNNKLVTLKSGEKIKYEKLIIASGSIANKIKV  121 (385)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred             CCCCEEEECCCCEEECCEEEEecCCCcCCCCC
Confidence            544 6888999999999999999998876544

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.34  E-value=2.5e-06  Score=81.26  Aligned_cols=104  Identities=16%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|..|+.+|..|++.|.+|+++++.+.+                                            
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~--------------------------------------------  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF--------------------------------------------  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC--------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc--------------------------------------------
Confidence            578999999999999999999999999999987532                                            


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            ....+..+.+.+..++.++.  +.++++|.+++.. +.         ...|++....++...++.+|.||+|+|
T Consensus       188 ------~~~~~~~~~l~~~l~~~gv~--v~~~~~v~~i~~~-~~---------~~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (335)
T 2zbw_A          188 ------RAHEASVKELMKAHEEGRLE--VLTPYELRRVEGD-ER---------VRWAVVFHNQTQEELALEVDAVLILAG  249 (335)
T ss_dssp             ------CSCHHHHHHHHHHHHTTSSE--EETTEEEEEEEES-SS---------EEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ------CccHHHHHHHHhccccCCeE--EecCCcceeEccC-CC---------eeEEEEEECCCCceEEEecCEEEEeec
Confidence                  00134556666666666877  8899999999873 21         235666532123345789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+.+
T Consensus       250 --~~p~~~  255 (335)
T 2zbw_A          250 --YITKLG  255 (335)
T ss_dssp             --EEEECG
T ss_pred             --CCCCch
Confidence              666653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.33  E-value=1.6e-06  Score=89.42  Aligned_cols=98  Identities=22%  Similarity=0.317  Sum_probs=77.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  224 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP------------------------------------------  224 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc------------------------------------------
Confidence            57899999999999999999999999999998764310                                          


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                          .  ...++.+.+.+..++.++.  ++++++|.+++...           . .|++.++.     ++.+|.||+|+|
T Consensus       225 ----~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-----------~-~v~~~~g~-----~i~~D~Vi~a~G  279 (588)
T 3ics_A          225 ----P--IDYEMAAYVHEHMKNHDVE--LVFEDGVDALEENG-----------A-VVRLKSGS-----VIQTDMLILAIG  279 (588)
T ss_dssp             ----T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEGGG-----------T-EEEETTSC-----EEECSEEEECSC
T ss_pred             ----c--CCHHHHHHHHHHHHHcCCE--EEECCeEEEEecCC-----------C-EEEECCCC-----EEEcCEEEEccC
Confidence                0  1156778888888888988  89999999987542           1 35565544     789999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        ..|+.
T Consensus       280 --~~p~~  284 (588)
T 3ics_A          280 --VQPES  284 (588)
T ss_dssp             --EEECC
T ss_pred             --CCCCh
Confidence              67765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.33  E-value=2.6e-06  Score=85.85  Aligned_cols=102  Identities=26%  Similarity=0.346  Sum_probs=76.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHH----cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRK----EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~----~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      .++|+|||||+.|+.+|..|++    .|.+|+++++.+.+.+                                      
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~--------------------------------------  221 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG--------------------------------------  221 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT--------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc--------------------------------------
Confidence            5789999999999999999976    4789999998652200                                      


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                             ..++  .++.+++.+..++.++.  ++++++|.+++..++          ...|++.++.     ++.+|.||
T Consensus       222 -------~~l~--~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~~----------~~~v~l~dG~-----~i~aD~Vv  275 (493)
T 1m6i_A          222 -------KILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSSG----------KLLIKLKDGR-----KVETDHIV  275 (493)
T ss_dssp             -------TTSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEETT----------EEEEEETTSC-----EEEESEEE
T ss_pred             -------ccCC--HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCC----------eEEEEECCCC-----EEECCEEE
Confidence                   0011  46677778888888887  999999999976432          4456666554     78999999


Q ss_pred             EccCCCCCCCCC
Q 044575          168 VATGHYSYPRLP  179 (454)
Q Consensus       168 iAtG~~~~p~~p  179 (454)
                      +|+|  ..|+..
T Consensus       276 ~a~G--~~pn~~  285 (493)
T 1m6i_A          276 AAVG--LEPNVE  285 (493)
T ss_dssp             ECCC--EEECCT
T ss_pred             ECCC--CCccHH
Confidence            9999  677653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.31  E-value=2.7e-07  Score=93.68  Aligned_cols=41  Identities=44%  Similarity=0.686  Sum_probs=38.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~   52 (454)
                      .+||+|||||+|||+||..|++.| .+|+|+|+++.+||.+.
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~   49 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQ   49 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCcee
Confidence            479999999999999999999999 99999999999999875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.29  E-value=2.2e-06  Score=81.60  Aligned_cols=103  Identities=20%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                          
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~------------------------------------------  209 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR------------------------------------------  209 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC------------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC------------------------------------------
Confidence            35789999999999999999999999999999875320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ....+   .+.+.+..++.  +.++++|.+|+..+..         ...|++.+..++...++.+|.||+|+
T Consensus       210 --------~~~~~---~~~l~~~~gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~~~~g~~~~i~~D~vi~a~  267 (338)
T 3itj_A          210 --------ASTIM---QKRAEKNEKIE--ILYNTVALEAKGDGKL---------LNALRIKNTKKNEETDLPVSGLFYAI  267 (338)
T ss_dssp             --------SCHHH---HHHHHHCTTEE--EECSEEEEEEEESSSS---------EEEEEEEETTTTEEEEEECSEEEECS
T ss_pred             --------CCHHH---HHHHHhcCCeE--EeecceeEEEEcccCc---------EEEEEEEECCCCceEEEEeCEEEEEe
Confidence                    00222   22222333666  8889999999876432         33477766433445678999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       268 G--~~p~~~  274 (338)
T 3itj_A          268 G--HTPATK  274 (338)
T ss_dssp             C--EEECCG
T ss_pred             C--CCCChh
Confidence            9  666654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.27  E-value=1.5e-06  Score=85.40  Aligned_cols=89  Identities=13%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh---hcCeEEEecccCCcC--c-----------------cchhhhccC-CCeEEcCceeE
Q 044575          206 EVVVVVGNSLSGQDISMELVE---VAKEVHLSAKSLNIS--E-----------------GLSKVISKH-NNLHLHPQIDC  262 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~---~~~~V~l~~r~~~~~--~-----------------~~~~~l~~~-~~i~~~~~v~~  262 (454)
                      ++|+|||||++|+.+|..|++   .+.+|+++++.+.+.  +                 .+.+.+.+. .+++.. .+++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            589999999999999999999   889999999887541  1                 011222222 344444 7888


Q ss_pred             EecCC-cEEEeCCCE----EeeceEEEccCcccCCcCC
Q 044575          263 LREDG-RVTFVDGCW----VTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       263 v~~~~-~v~~~dG~~----i~~D~vI~atG~~~~~~~l  295 (454)
                      ++.++ .|++.+|+.    +++|.||+|||.+|+.+-+
T Consensus        81 i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i  118 (409)
T 3h8l_A           81 IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV  118 (409)
T ss_dssp             EETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGS
T ss_pred             EeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCC
Confidence            87543 688888764    8899999999999876543

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.27  E-value=5.6e-07  Score=88.82  Aligned_cols=40  Identities=38%  Similarity=0.716  Sum_probs=37.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||++|++||..|++.|.+|+|+|+++.+||.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFT   40 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeE
Confidence            3899999999999999999999999999999999999765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.27  E-value=2.4e-06  Score=85.10  Aligned_cols=100  Identities=21%  Similarity=0.265  Sum_probs=72.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------  186 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR----------------------------------------  186 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh----------------------------------------
Confidence            3468999999999999999999999999999997643100                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           .  ...++.+.+.+..++. +.  +++++.|.+++..+ .         ...+ ..++.     ++.+|.||+|+
T Consensus       187 -----~--~~~~~~~~l~~~l~~~-v~--i~~~~~v~~i~~~~-~---------v~~v-~~~g~-----~i~~D~Vv~a~  240 (449)
T 3kd9_A          187 -----S--FDKEVTDILEEKLKKH-VN--LRLQEITMKIEGEE-R---------VEKV-VTDAG-----EYKAELVILAT  240 (449)
T ss_dssp             -----T--SCHHHHHHHHHHHTTT-SE--EEESCCEEEEECSS-S---------CCEE-EETTE-----EEECSEEEECS
T ss_pred             -----h--cCHHHHHHHHHHHHhC-cE--EEeCCeEEEEeccC-c---------EEEE-EeCCC-----EEECCEEEEee
Confidence                 0  0156667777766655 55  88899999987543 1         1122 23332     68999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       241 G--~~p~~  246 (449)
T 3kd9_A          241 G--IKPNI  246 (449)
T ss_dssp             C--EEECC
T ss_pred             C--CccCH
Confidence            9  67765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.25  E-value=1.7e-06  Score=80.67  Aligned_cols=90  Identities=17%  Similarity=0.232  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC---------cc------------chhhhccCCCe-EEcCceeEE
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS---------EG------------LSKVISKHNNL-HLHPQIDCL  263 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~---------~~------------~~~~l~~~~~i-~~~~~v~~v  263 (454)
                      .+|+|||+|++|+.+|..|++.+.+|+++++.+...         +.            +.+.+.+...+ +....++.+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i   82 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA   82 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence            479999999999999999999999999999754320         00            11122232222 335678887


Q ss_pred             ecCC---cEEEeCCCEEeeceEEEccCcccCCcCC
Q 044575          264 REDG---RVTFVDGCWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       264 ~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l  295 (454)
                      ..++   .|.+.+|+++.+|.||+|||..|..+-+
T Consensus        83 ~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~  117 (297)
T 3fbs_A           83 KGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEI  117 (297)
T ss_dssp             EEETTEEEEEETTSCEEEEEEEEECCCCEEECCCC
T ss_pred             EEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCC
Confidence            6442   5777889899999999999999876533

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.25  E-value=6e-07  Score=88.64  Aligned_cols=40  Identities=43%  Similarity=0.645  Sum_probs=37.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||++|++||..|++.|.+|+|+|+++.+||...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT   40 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence            4899999999999999999999999999999999998754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.24  E-value=6.8e-06  Score=77.22  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=71.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------------------------------  180 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-------------------------------------------  180 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC-------------------------------------------
Confidence            4789999999999999999999999999999875320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ....    +.+...+ .++.  ++++++|.++...++.         -..|++.+..+++..++.+|.||+|+
T Consensus       181 -------~~~~----~~~~l~~~~gv~--v~~~~~v~~i~~~~~~---------v~~v~~~~~~~g~~~~i~~D~vi~a~  238 (310)
T 1fl2_A          181 -------ADQV----LQDKLRSLKNVD--IILNAQTTEVKGDGSK---------VVGLEYRDRVSGDIHNIELAGIFVQI  238 (310)
T ss_dssp             -------SCHH----HHHHHHTCTTEE--EESSEEEEEEEESSSS---------EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             -------ccHH----HHHHHhhCCCeE--EecCCceEEEEcCCCc---------EEEEEEEECCCCcEEEEEcCEEEEee
Confidence                   0012    2222333 4665  8889999999864321         22466665333445578999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       239 G--~~p~~~  245 (310)
T 1fl2_A          239 G--LLPNTN  245 (310)
T ss_dssp             C--EEESCG
T ss_pred             C--CccCch
Confidence            9  666643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.23  E-value=6.9e-07  Score=90.34  Aligned_cols=44  Identities=43%  Similarity=0.613  Sum_probs=39.3

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      |.+.+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   53 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   53 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence            55678999999999999999999999999999999999999875

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.23  E-value=5.5e-07  Score=89.73  Aligned_cols=41  Identities=49%  Similarity=0.810  Sum_probs=38.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      .+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            47999999999999999999999999999999999999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.23  E-value=4.5e-06  Score=80.37  Aligned_cols=104  Identities=17%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-------------------------------------------  199 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ-------------------------------------------  199 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS-------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC-------------------------------------------
Confidence            4789999999999999999999999999999875320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ...++.+.+.+..++.++.  +.++++|.+++..++.         -..|++... ++...++.+|.||+|+|
T Consensus       200 -------~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~~---------v~~v~~~~~-~g~~~~i~~D~vi~a~G  260 (360)
T 3ab1_A          200 -------GHGKTAHEVERARANGTID--VYLETEVASIEESNGV---------LTRVHLRSS-DGSKWTVEADRLLILIG  260 (360)
T ss_dssp             -------SCSHHHHSSHHHHHHTSEE--EESSEEEEEEEEETTE---------EEEEEEEET-TCCEEEEECSEEEECCC
T ss_pred             -------CCHHHHHHHHHHhhcCceE--EEcCcCHHHhccCCCc---------eEEEEEEec-CCCeEEEeCCEEEECCC
Confidence                   0012344455556666776  8899999999875321         224555421 13345789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       261 --~~p~~~  266 (360)
T 3ab1_A          261 --FKSNLG  266 (360)
T ss_dssp             --BCCSCG
T ss_pred             --CCCCHH
Confidence              666653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.23  E-value=1e-06  Score=88.63  Aligned_cols=43  Identities=35%  Similarity=0.468  Sum_probs=40.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~   53 (454)
                      ..+||+|||||++|+++|..|++.| .+|+|+|+++.+||.|..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            4589999999999999999999998 799999999999999874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.20  E-value=3.1e-06  Score=79.65  Aligned_cols=103  Identities=15%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                          
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------------------------------  179 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR------------------------------------------  179 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC------------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC------------------------------------------
Confidence            35789999999999999999999999999999875320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ...++.   +.+.++.++.  +.++++|.+++..++.         ...|++.+..++...++.+|.||+|+
T Consensus       180 --------~~~~~~---~~l~~~~gv~--v~~~~~v~~i~~~~~~---------v~~v~~~~~~~g~~~~i~~D~vi~a~  237 (311)
T 2q0l_A          180 --------CAPITL---EHAKNNDKIE--FLTPYVVEEIKGDASG---------VSSLSIKNTATNEKRELVVPGFFIFV  237 (311)
T ss_dssp             --------SCHHHH---HHHHTCTTEE--EETTEEEEEEEEETTE---------EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             --------CCHHHH---HHHhhCCCeE--EEeCCEEEEEECCCCc---------EeEEEEEecCCCceEEEecCEEEEEe
Confidence                    002222   2222224555  7889999999865321         23466654222334578999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+.+
T Consensus       238 G--~~p~~~  244 (311)
T 2q0l_A          238 G--YDVNNA  244 (311)
T ss_dssp             C--EEECCG
T ss_pred             c--CccChh
Confidence            9  677654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.20  E-value=1.1e-06  Score=85.62  Aligned_cols=41  Identities=37%  Similarity=0.694  Sum_probs=38.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      ++|+|||||++|+++|..|++.|.+|+|+|+++.+||.|..
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            68999999999999999999999999999999999999863

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.20  E-value=9.2e-06  Score=76.72  Aligned_cols=101  Identities=20%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-------------------------------------------  191 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-------------------------------------------  191 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-------------------------------------------
Confidence            4789999999999999999999999999999865320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ....+.+    .+.+.++.  +.++++|.++...+..         ...|.+.+..++...++.+|.||+|+|
T Consensus       192 -------~~~~l~~----~l~~~gv~--i~~~~~v~~i~~~~~~---------v~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (319)
T 3cty_A          192 -------CENAYVQ----EIKKRNIP--YIMNAQVTEIVGDGKK---------VTGVKYKDRTTGEEKLIETDGVFIYVG  249 (319)
T ss_dssp             -------SCHHHHH----HHHHTTCC--EECSEEEEEEEESSSS---------EEEEEEEETTTCCEEEECCSEEEECCC
T ss_pred             -------CCHHHHH----HHhcCCcE--EEcCCeEEEEecCCce---------EEEEEEEEcCCCceEEEecCEEEEeeC
Confidence                   0022222    33356777  8899999999865321         123555532223344689999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       250 --~~p~~~  255 (319)
T 3cty_A          250 --LIPQTS  255 (319)
T ss_dssp             --EEECCG
T ss_pred             --CccChH
Confidence              666643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.20  E-value=5.3e-06  Score=82.95  Aligned_cols=104  Identities=24%  Similarity=0.310  Sum_probs=73.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  210 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT-----------------------------------------  210 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC-----------------------------------------
Confidence            478999999999999999999999999999997643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                           + ...++.+.+.+..+   +.  +.++++|.+++..+++         ...|++.+. ++...++.+|.||+|+|
T Consensus       211 -----~-~d~~~~~~l~~~l~---v~--i~~~~~v~~i~~~~~~---------~v~v~~~~~-~G~~~~i~~D~vi~a~G  269 (466)
T 3l8k_A          211 -----L-EDQDIVNTLLSILK---LN--IKFNSPVTEVKKIKDD---------EYEVIYSTK-DGSKKSIFTNSVVLAAG  269 (466)
T ss_dssp             -----S-CCHHHHHHHHHHHC---CC--EECSCCEEEEEEEETT---------EEEEEECCT-TSCCEEEEESCEEECCC
T ss_pred             -----C-CCHHHHHHHHhcCE---EE--EEECCEEEEEEEcCCC---------cEEEEEEec-CCceEEEEcCEEEECcC
Confidence                 0 01455555554433   55  8889999999875412         455666521 12234688999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+..
T Consensus       270 --~~p~~~  275 (466)
T 3l8k_A          270 --RRPVIP  275 (466)
T ss_dssp             --EEECCC
T ss_pred             --CCcccc
Confidence              777765

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.19  E-value=1.7e-05  Score=81.97  Aligned_cols=108  Identities=23%  Similarity=0.249  Sum_probs=75.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++. .+.                                           
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l-------------------------------------------  321 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL-------------------------------------------  321 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc-------------------------------------------
Confidence            468999999999999999999999999999985 210                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc-----CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML-----DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV  166 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v  166 (454)
                         +.  ...++.+++.+..++.++.  +++++.+.+|...     ..+     ..+ ...+.....+ +....+.+|.|
T Consensus       322 ---~~--~d~~~~~~~~~~l~~~gv~--i~~~~~v~~v~~~~~~~~~~~-----~~~-~~~v~~~~~~-g~~~~~~~D~v  387 (598)
T 2x8g_A          322 ---RG--FDQQMAEKVGDYMENHGVK--FAKLCVPDEIKQLKVVDTENN-----KPG-LLLVKGHYTD-GKKFEEEFETV  387 (598)
T ss_dssp             ---TT--SCHHHHHHHHHHHHHTTCE--EEETEEEEEEEEEECCBTTTT-----BCC-EEEEEEEETT-SCEEEEEESEE
T ss_pred             ---Cc--CCHHHHHHHHHHHHhCCCE--EEECCeEEEEEeccccccccC-----CCc-eEEEEEEeCC-CcEEeccCCEE
Confidence               00  0156777788888888888  8889988888653     110     001 4445433222 23344569999


Q ss_pred             EEccCCCCCCCCC
Q 044575          167 VVATGHYSYPRLP  179 (454)
Q Consensus       167 ViAtG~~~~p~~p  179 (454)
                      |+|+|  ..|+..
T Consensus       388 i~a~G--~~p~~~  398 (598)
T 2x8g_A          388 IFAVG--REPQLS  398 (598)
T ss_dssp             EECSC--EEECGG
T ss_pred             EEEeC--CccccC
Confidence            99999  677653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.18  E-value=4.1e-06  Score=79.63  Aligned_cols=105  Identities=19%  Similarity=0.188  Sum_probs=71.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|..|+.+|..|++.|.+|+++++.+.+.                                          
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~------------------------------------------  195 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------------------------------------------  195 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC------------------------------------------
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC------------------------------------------
Confidence            35789999999999999999999999999999875320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ..+.+   .+++.++.++.  +.++++|.+++..++..      . -..|.+.+..++...++.+|.||+|+
T Consensus       196 --------~~~~~---~~~~~~~~gv~--i~~~~~v~~i~~~~~~~------~-v~~v~~~~~~~g~~~~i~~D~vi~a~  255 (333)
T 1vdc_A          196 --------ASKIM---QQRALSNPKID--VIWNSSVVEAYGDGERD------V-LGGLKVKNVVTGDVSDLKVSGLFFAI  255 (333)
T ss_dssp             --------SCHHH---HHHHHTCTTEE--EECSEEEEEEEESSSSS------S-EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             --------ccHHH---HHHHHhCCCee--EecCCceEEEeCCCCcc------c-eeeEEEEecCCCceEEEecCEEEEEe
Confidence                    00111   12233344665  78899999998654210      0 22356654322334578999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       256 G--~~p~~~  262 (333)
T 1vdc_A          256 G--HEPATK  262 (333)
T ss_dssp             C--EEESCG
T ss_pred             C--CccchH
Confidence            9  677654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.18  E-value=9.4e-07  Score=88.66  Aligned_cols=40  Identities=35%  Similarity=0.573  Sum_probs=38.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||++||+||.+|++.|.  +|+|+|+++.+||...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~   44 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIR   44 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceE
Confidence            689999999999999999999999  9999999999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.17  E-value=1e-06  Score=88.42  Aligned_cols=42  Identities=40%  Similarity=0.608  Sum_probs=38.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ..+||+|||||++|++||..|++.|++|+|+|+++.+||...
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~   56 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG   56 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceee
Confidence            468999999999999999999999999999999999999865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.17  E-value=4.2e-06  Score=79.36  Aligned_cols=102  Identities=24%  Similarity=0.259  Sum_probs=70.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                          
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------------------------------  188 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR------------------------------------------  188 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC------------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC------------------------------------------
Confidence            34789999999999999999999999999999875320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ....+   .+++.++.++.  ++++++|.++...+ .         ...|.+.+..++...++.+|.||+|+
T Consensus       189 --------~~~~~---~~~l~~~~gv~--i~~~~~v~~i~~~~-~---------v~~v~~~~~~~g~~~~i~~D~vi~a~  245 (325)
T 2q7v_A          189 --------ANKVA---QARAFANPKMK--FIWDTAVEEIQGAD-S---------VSGVKLRNLKTGEVSELATDGVFIFI  245 (325)
T ss_dssp             --------SCHHH---HHHHHTCTTEE--EECSEEEEEEEESS-S---------EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             --------cchHH---HHHHHhcCCce--EecCCceEEEccCC-c---------EEEEEEEECCCCcEEEEEcCEEEEcc
Confidence                    00122   22222223555  88899999998642 1         23566654222334578999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       246 G--~~p~~~  252 (325)
T 2q7v_A          246 G--HVPNTA  252 (325)
T ss_dssp             C--EEESCG
T ss_pred             C--CCCChH
Confidence            9  677654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.16  E-value=8.8e-06  Score=82.01  Aligned_cols=101  Identities=24%  Similarity=0.332  Sum_probs=74.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--------------CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--------------GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREI   78 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--------------g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++|||||+.|+.+|..|++.              ..+|+++|..+.+.                              
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------  267 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------  267 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------------------------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------------------------
Confidence            4699999999999999988653              36899999987541                              


Q ss_pred             cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC-Ce
Q 044575           79 MGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA-DK  157 (454)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  157 (454)
                                      +.|  .+++.+++.+..++.+++  ++++++|.+|+..            ...+.....+. ..
T Consensus       268 ----------------~~~--~~~~~~~~~~~L~~~GV~--v~~~~~v~~v~~~------------~~~~~~~~~dg~~~  315 (502)
T 4g6h_A          268 ----------------NMF--EKKLSSYAQSHLENTSIK--VHLRTAVAKVEEK------------QLLAKTKHEDGKIT  315 (502)
T ss_dssp             ----------------TTS--CHHHHHHHHHHHHHTTCE--EETTEEEEEECSS------------EEEEEEECTTSCEE
T ss_pred             ----------------cCC--CHHHHHHHHHHHHhccee--eecCceEEEEeCC------------ceEEEEEecCcccc
Confidence                            011  168889999999999998  9999999998643            33333322211 12


Q ss_pred             EEEEEeCEEEEccCCCCCCC
Q 044575          158 VVEEVFDAVVVATGHYSYPR  177 (454)
Q Consensus       158 ~~~~~~d~vViAtG~~~~p~  177 (454)
                      ..++.||.||.|+|  ..|+
T Consensus       316 ~~~i~ad~viwa~G--v~~~  333 (502)
T 4g6h_A          316 EETIPYGTLIWATG--NKAR  333 (502)
T ss_dssp             EEEEECSEEEECCC--EECC
T ss_pred             eeeeccCEEEEccC--CcCC
Confidence            34789999999999  5665

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.16  E-value=1.3e-06  Score=84.60  Aligned_cols=41  Identities=32%  Similarity=0.566  Sum_probs=38.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence            58999999999999999999999999999999999998763

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.16  E-value=5.3e-06  Score=80.02  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|++|+.+|..|++.|.+|+++++.+.+...               .+                        
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~---------------~~------------------------  206 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP---------------DA------------------------  206 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC---------------CC------------------------
Confidence            468999999999999999999999999999997643100               00                        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE-EeCEEEEc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE-VFDAVVVA  169 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vViA  169 (454)
                       + +.......+.+.+.+..++.+ +.  +.++++|.+|+..++          ...|++.++.     ++ .+|.||+|
T Consensus       207 -d-~~~~~~~~~~~~l~~~l~~~g~v~--~~~~~~v~~i~~~~~----------~~~v~~~~g~-----~~~~~d~vi~a  267 (369)
T 3d1c_A          207 -D-PSVRLSPYTRQRLGNVIKQGARIE--MNVHYTVKDIDFNNG----------QYHISFDSGQ-----SVHTPHEPILA  267 (369)
T ss_dssp             ---CTTSCCHHHHHHHHHHHHTTCCEE--EECSCCEEEEEEETT----------EEEEEESSSC-----CEEESSCCEEC
T ss_pred             -C-CCccCCHHHHHHHHHHHhhCCcEE--EecCcEEEEEEecCC----------ceEEEecCCe-----EeccCCceEEe
Confidence             0 000111455566666666664 76  888999999875432          5567666553     34 46999999


Q ss_pred             cCCCCCCCC
Q 044575          170 TGHYSYPRL  178 (454)
Q Consensus       170 tG~~~~p~~  178 (454)
                      ||  ..|+.
T Consensus       268 ~G--~~~~~  274 (369)
T 3d1c_A          268 TG--FDATK  274 (369)
T ss_dssp             CC--BCGGG
T ss_pred             ec--cCCcc
Confidence            99  67765

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.16  E-value=1.6e-06  Score=85.94  Aligned_cols=45  Identities=20%  Similarity=0.354  Sum_probs=41.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      |...+||+|||||++|+++|..|++.|.+|+++|+++.+||.+..
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s   47 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS   47 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence            455689999999999999999999999999999999999998763

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.15  E-value=1.2e-06  Score=88.47  Aligned_cols=40  Identities=38%  Similarity=0.639  Sum_probs=38.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence            7999999999999999999999999999999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.14  E-value=7.8e-06  Score=77.09  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=72.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                          
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------  190 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK------------------------------------------  190 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC------------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC------------------------------------------
Confidence            45789999999999999999999999999999875320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ...+   +++++.++.++.  +.++++|.+++..+.          ...|++.+..+++..++.+|.||+|+
T Consensus       191 --------~~~~---~~~~~~~~~gv~--~~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~~~~D~vv~a~  247 (323)
T 3f8d_A          191 --------AQPI---YVETVKKKPNVE--FVLNSVVKEIKGDKV----------VKQVVVENLKTGEIKELNVNGVFIEI  247 (323)
T ss_dssp             --------SCHH---HHHHHHTCTTEE--EECSEEEEEEEESSS----------EEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             --------cCHH---HHHHHHhCCCcE--EEeCCEEEEEeccCc----------eeEEEEEECCCCceEEEEcCEEEEEE
Confidence                    0012   233333334665  888999999986521          34577766333445578999999999


Q ss_pred             CCCCCCCC
Q 044575          171 GHYSYPRL  178 (454)
Q Consensus       171 G~~~~p~~  178 (454)
                      |  ..|+.
T Consensus       248 G--~~p~~  253 (323)
T 3f8d_A          248 G--FDPPT  253 (323)
T ss_dssp             C--EECCH
T ss_pred             C--CCCCh
Confidence            9  67764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.12  E-value=1.8e-06  Score=85.78  Aligned_cols=47  Identities=21%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             hhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575            7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY   53 (454)
Q Consensus         7 ~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~   53 (454)
                      +.|++.+||+|||+|.+|+++|..|++.|.+|+++|+++.+||.+..
T Consensus        15 ~~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s   61 (475)
T 3p1w_A           15 YFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS   61 (475)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence            34667799999999999999999999999999999999999998753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.10  E-value=1.9e-06  Score=86.97  Aligned_cols=43  Identities=42%  Similarity=0.628  Sum_probs=39.7

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ...+||+|||||++||++|..|++.|.+|+|+|+++.+||.+.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence            3468999999999999999999999999999999999999764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.09  E-value=5.7e-06  Score=76.98  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCcCc------------------------------------------
Q 044575          206 EVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNISE------------------------------------------  242 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~~~------------------------------------------  242 (454)
                      .+|+|||+|++|+.+|..|++. +.+|+++++.+.+..                                          
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 999999998764310                                          


Q ss_pred             ----cchhhhcc--CCCeEEcCceeEEecC-C---cEEEe---------CC-----CEEeeceEEEccCcccCCcCCC--
Q 044575          243 ----GLSKVISK--HNNLHLHPQIDCLRED-G---RVTFV---------DG-----CWVTADTILYCTGYSYSFPFLD--  296 (454)
Q Consensus       243 ----~~~~~l~~--~~~i~~~~~v~~v~~~-~---~v~~~---------dG-----~~i~~D~vI~atG~~~~~~~l~--  296 (454)
                          .+.+.+.+  ..+++.+..|+++..+ +   .|.+.         +|     .++++|.||.|||..+.+....  
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~  199 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK  199 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence                00111112  2357777888888632 2   23443         32     4688999999999877653211  


Q ss_pred             ---CCC-ceeeCCCCcccccC--c-c--cCCCCCCCceEeccccc--------ccchhHHHHHHHHHHHHHcC
Q 044575          297 ---TKG-IVVVDDDRVGPLYE--H-T--FPPSLAPSLSFVGIPRK--------LIGFPFFESQAKWIAQLLSG  352 (454)
Q Consensus       297 ---~~g-~i~v~~~~~~~~~~--~-~--~~~~~~p~l~~iG~~~~--------~~~~~~a~~qa~~~a~~i~g  352 (454)
                         ..+ .+.+..........  . +  ...+..|++|+.|+...        ++++..+..|++.+|..+..
T Consensus       200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence               000 00000000000000  0 0  00012489999987542        34566677788888776644

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.08  E-value=2.3e-06  Score=85.86  Aligned_cols=41  Identities=29%  Similarity=0.472  Sum_probs=38.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~   52 (454)
                      .+||+|||||++|+++|..|++.|  .+|+|+|+++.+||.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~   46 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVA   46 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeE
Confidence            479999999999999999999999  99999999999999765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.07  E-value=1.1e-05  Score=75.79  Aligned_cols=103  Identities=16%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||+.|+.+|..|++.|.+|+++++.+..                                           
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~-------------------------------------------  187 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF-------------------------------------------  187 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-------------------------------------------
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc-------------------------------------------
Confidence            3578999999999999999999999999999985421                                           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        .    .. .+.   ........+.  .......+..+......         .-.+.+.+...+...++.+|.|++|+
T Consensus       188 --~----~~-~~~---~~~~~~~~~~--~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~i~~d~vi~a~  246 (314)
T 4a5l_A          188 --R----AS-KTM---QERVLNHPKI--EVIWNSELVELEGDGDL---------LNGAKIHNLVSGEYKVVPVAGLFYAI  246 (314)
T ss_dssp             --C----SC-HHH---HHHHHTCTTE--EEECSEEEEEEEESSSS---------EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             --c----cc-chh---hhhhhcccce--eeEeeeeeEEEEeeeec---------cceeEEeecccccceeeccccceEec
Confidence              0    00 111   1111111222  25566677777655432         23345554444456689999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       247 G--~~pn~~  253 (314)
T 4a5l_A          247 G--HSPNSK  253 (314)
T ss_dssp             C--EEESCG
T ss_pred             c--cccChh
Confidence            9  777754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.06  E-value=5.1e-06  Score=79.16  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                          .           .   
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~--------------------------~-----------~---  193 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR--------------------------A-----------S---  193 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS--------------------------S-----------C---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC--------------------------c-----------c---
Confidence            35789999999999999999999999999999875320                          0           0   


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                                +.+   ..++.++.++.  +.++++|.+++..+.          ...|.+.+..++...++.+|.||+|+
T Consensus       194 ----------~~~---~~~~~~~~gV~--v~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~i~~D~vi~a~  248 (335)
T 2a87_A          194 ----------KIM---LDRARNNDKIR--FLTNHTVVAVDGDTT----------VTGLRVRDTNTGAETTLPVTGVFVAI  248 (335)
T ss_dssp             ----------TTH---HHHHHHCTTEE--EECSEEEEEEECSSS----------CCEEEEEEETTSCCEEECCSCEEECS
T ss_pred             ----------HHH---HHHHhccCCcE--EEeCceeEEEecCCc----------EeEEEEEEcCCCceEEeecCEEEEcc
Confidence                      011   11233345666  888999999875431          22355543222223478999999999


Q ss_pred             CCCCCCCCCCC
Q 044575          171 GHYSYPRLPSI  181 (454)
Q Consensus       171 G~~~~p~~p~i  181 (454)
                      |  ..|+..-+
T Consensus       249 G--~~p~~~~~  257 (335)
T 2a87_A          249 G--HEPRSGLV  257 (335)
T ss_dssp             C--EEECCTTT
T ss_pred             C--CccChhHh
Confidence            9  67765433

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.05  E-value=7.9e-06  Score=76.80  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=72.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||+|+.|+.+|..|++.+.+|+++++.+.+.                                          
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------  183 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR------------------------------------------  183 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB------------------------------------------
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC------------------------------------------
Confidence            35789999999999999999999999999999875320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ...+   ++++..++.++.  +.++++|.+++..++.         ...|++.. .++...++.+|.||+|+
T Consensus       184 --------~~~~---~~~~~~~~~gv~--~~~~~~v~~i~~~~~~---------~~~v~~~~-~~g~~~~~~~D~vv~a~  240 (315)
T 3r9u_A          184 --------AAPS---TVEKVKKNEKIE--LITSASVDEVYGDKMG---------VAGVKVKL-KDGSIRDLNVPGIFTFV  240 (315)
T ss_dssp             --------SCHH---HHHHHHHCTTEE--EECSCEEEEEEEETTE---------EEEEEEEC-TTSCEEEECCSCEEECS
T ss_pred             --------CCHH---HHHHHHhcCCeE--EEeCcEEEEEEcCCCc---------EEEEEEEc-CCCCeEEeecCeEEEEE
Confidence                    0012   223334455666  8889999999865421         23355552 22344578899999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       241 G--~~p~~~  247 (315)
T 3r9u_A          241 G--LNVRNE  247 (315)
T ss_dssp             C--EEECCG
T ss_pred             c--CCCCch
Confidence            9  666654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.05  E-value=2.2e-05  Score=74.29  Aligned_cols=100  Identities=16%  Similarity=0.095  Sum_probs=73.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------------  190 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR-------------------------------------------  190 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS-------------------------------------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC-------------------------------------------
Confidence            4789999999999999999999999999999875320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ......    +.+++.++.  ++++++|.+++..+.          ...|++.+..++...++.+|.||+|+|
T Consensus       191 -------~~~~~~----~~l~~~gv~--~~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~~~~D~vv~a~G  247 (332)
T 3lzw_A          191 -------AHEHSV----ENLHASKVN--VLTPFVPAELIGEDK----------IEQLVLEEVKGDRKEILEIDDLIVNYG  247 (332)
T ss_dssp             -------SCHHHH----HHHHHSSCE--EETTEEEEEEECSSS----------CCEEEEEETTSCCEEEEECSEEEECCC
T ss_pred             -------ccHHHH----HHHhcCCeE--EEeCceeeEEecCCc----------eEEEEEEecCCCceEEEECCEEEEeec
Confidence                   001111    123556777  888999999986532          345666664444556789999999999


Q ss_pred             CCCCCCCC
Q 044575          172 HYSYPRLP  179 (454)
Q Consensus       172 ~~~~p~~p  179 (454)
                        ..|+.+
T Consensus       248 --~~p~~~  253 (332)
T 3lzw_A          248 --FVSSLG  253 (332)
T ss_dssp             --EECCCG
T ss_pred             --cCCCch
Confidence              677654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.99  E-value=5.5e-06  Score=79.91  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=32.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+||+|||||++|+++|.+|++.|.+|+|+|+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            45899999999999999999999999999999975

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.99  E-value=1.3e-05  Score=75.15  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc------Ccc-----------ch----hhhccCC-CeEEcCceeEEe
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI------SEG-----------LS----KVISKHN-NLHLHPQIDCLR  264 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~------~~~-----------~~----~~l~~~~-~i~~~~~v~~v~  264 (454)
                      .|+|||+|+.|+..|..+++.+.+|+++++...-      .+.           +.    +.+.++. ..+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            5999999999999999999999999999875321      000           00    1111222 223333444443


Q ss_pred             c--CC--cEEEeCCCEEeeceEEEccCcccCCcCCC
Q 044575          265 E--DG--RVTFVDGCWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       265 ~--~~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~  296 (454)
                      .  ++  .|.+.+|+++++|.||+|||.+|..|-+.
T Consensus        88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~  123 (304)
T 4fk1_A           88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIP  123 (304)
T ss_dssp             ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCT
T ss_pred             ecCCCcEEEEECCCCEEEeCEEEEccCCcccccccc
Confidence            2  22  57788999999999999999988765443

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.99  E-value=4.4e-06  Score=83.71  Aligned_cols=43  Identities=35%  Similarity=0.593  Sum_probs=38.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCccccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLY   53 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~   53 (454)
                      ..+||+|||||++|+++|..|.+.|. +|+|+|+++.+||.|..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~   46 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   46 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence            35799999999999999999999998 89999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.98  E-value=3.2e-05  Score=78.38  Aligned_cols=101  Identities=22%  Similarity=0.252  Sum_probs=71.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|.+|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~-------------------------------------------  391 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-------------------------------------------  391 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC-------------------------------------------
Confidence            5789999999999999999999999999999875320                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             ..    .++.+...+ .++.  +.++++|++|...++.         -..|.+.+..++...++.+|.||+|+
T Consensus       392 -------~~----~~l~~~l~~~~gV~--v~~~~~v~~i~~~~~~---------v~~v~~~~~~~g~~~~i~~D~vi~a~  449 (521)
T 1hyu_A          392 -------AD----QVLQDKVRSLKNVD--IILNAQTTEVKGDGSK---------VVGLEYRDRVSGDIHSVALAGIFVQI  449 (521)
T ss_dssp             -------SC----HHHHHHHTTCTTEE--EECSEEEEEEEECSSS---------EEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             -------cC----HHHHHHHhcCCCcE--EEeCCEEEEEEcCCCc---------EEEEEEEeCCCCceEEEEcCEEEECc
Confidence                   00    122222333 3555  8889999999764321         22466665433445678999999999


Q ss_pred             CCCCCCCCC
Q 044575          171 GHYSYPRLP  179 (454)
Q Consensus       171 G~~~~p~~p  179 (454)
                      |  ..|+..
T Consensus       450 G--~~pn~~  456 (521)
T 1hyu_A          450 G--LLPNTH  456 (521)
T ss_dssp             C--EEESCG
T ss_pred             C--CCCCch
Confidence            9  666653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.91  E-value=1.9e-05  Score=76.66  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc------------------cc----------------------
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE------------------GL----------------------  244 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~------------------~~----------------------  244 (454)
                      ..+|+|||+|++|+.+|..|++.|.+|+++++.+....                  ++                      
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            36899999999999999999999999999998765411                  00                      


Q ss_pred             -------------------hhh----hc-cCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccC
Q 044575          245 -------------------SKV----IS-KHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       245 -------------------~~~----l~-~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                         .+.    +. ..++++.+..|+++..++.|++.||+++++|.||.|+|....
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccHH
Confidence                               000    00 112466677788876433677888999999999999998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.88  E-value=1.5e-05  Score=76.28  Aligned_cols=83  Identities=17%  Similarity=0.077  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC------------------------------------ccchhhh-
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS------------------------------------EGLSKVI-  248 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~------------------------------------~~~~~~l-  248 (454)
                      .+|+|||+|++|+.+|..|++.+.+|+++++.+.+.                                    ..+.+.+ 
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            479999999999999999999999999999886431                                    0011111 


Q ss_pred             ---cc-CCCeEEcCceeEEecCC-c---EEEeCCCEEeeceEEEccCcc
Q 044575          249 ---SK-HNNLHLHPQIDCLREDG-R---VTFVDGCWVTADTILYCTGYS  289 (454)
Q Consensus       249 ---~~-~~~i~~~~~v~~v~~~~-~---v~~~dG~~i~~D~vI~atG~~  289 (454)
                         .+ ..+++.+..|+++..++ .   |.+.+| ++++|.||+|||..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence               11 23567778888886443 2   555555 88999999999963

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.88  E-value=9.1e-06  Score=84.88  Aligned_cols=43  Identities=42%  Similarity=0.638  Sum_probs=39.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ...++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~  147 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  147 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            3458999999999999999999999999999999999999764

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.86  E-value=1.1e-05  Score=85.81  Aligned_cols=42  Identities=43%  Similarity=0.657  Sum_probs=39.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ..++|+|||||++||+||..|.+.|++|+|||+++.+||.+.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~  318 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  318 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCcee
Confidence            457999999999999999999999999999999999999754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.84  E-value=8.8e-06  Score=80.46  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=31.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3789999999999999999999999999999976

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.83  E-value=3.4e-05  Score=75.33  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||+|++|+=+|..|++.|.+|++++|.+.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            7999999999999999999999999999986654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.82  E-value=5.6e-05  Score=79.35  Aligned_cols=102  Identities=24%  Similarity=0.107  Sum_probs=71.9

Q ss_pred             CCcEEEEC--cChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIG--AGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIG--aG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .++|+|||  +|+.|+.+|..|++.|.+|+++++.+.+.....                                     
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~-------------------------------------  565 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN-------------------------------------  565 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG-------------------------------------
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc-------------------------------------
Confidence            46799999  999999999999999999999998764321110                                     


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                                .......+.+.+++.++.  +.++++|.+|+..            .-.+...  .++...++.+|.||+|
T Consensus       566 ----------~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~------------~~~v~~~--~~~~~~~i~aD~VV~A  619 (690)
T 3k30_A          566 ----------NTFEVNRIQRRLIENGVA--RVTDHAVVAVGAG------------GVTVRDT--YASIERELECDAVVMV  619 (690)
T ss_dssp             ----------GGTCHHHHHHHHHHTTCE--EEESEEEEEEETT------------EEEEEET--TTCCEEEEECSEEEEE
T ss_pred             ----------cchhHHHHHHHHHHCCCE--EEcCcEEEEEECC------------eEEEEEc--cCCeEEEEECCEEEEC
Confidence                      011234556666777887  9999999998743            2223321  1123447899999999


Q ss_pred             cCCCCCCCC
Q 044575          170 TGHYSYPRL  178 (454)
Q Consensus       170 tG~~~~p~~  178 (454)
                      +|  ..|+.
T Consensus       620 ~G--~~p~~  626 (690)
T 3k30_A          620 TA--RLPRE  626 (690)
T ss_dssp             SC--EEECC
T ss_pred             CC--CCCCh
Confidence            99  66654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.82  E-value=4e-05  Score=75.07  Aligned_cols=85  Identities=16%  Similarity=0.322  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc------------------cc---------------------
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE------------------GL---------------------  244 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~------------------~~---------------------  244 (454)
                      +..+|+|||||++|+-+|..|++.|.+|+++++.+...+                  ++                     
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            346899999999999999999999999999999765300                  00                     


Q ss_pred             --------------------------------hhhhccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcc
Q 044575          245 --------------------------------SKVISKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYS  289 (454)
Q Consensus       245 --------------------------------~~~l~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~  289 (454)
                                                      .+.+.+ .+++.++.|+++..++   .|++.||+++.+|.||.|.|..
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~  180 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR-DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSH  180 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG-GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTT
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc-CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcC
Confidence                                            000011 3467778888886433   5677899999999999999976

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.79  E-value=8e-05  Score=74.29  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=32.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++++.
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            357899999999999999999999999999998763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.77  E-value=2.8e-05  Score=78.29  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--------c-----------------------------cchh
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--------E-----------------------------GLSK  246 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--------~-----------------------------~~~~  246 (454)
                      ...+|+|||||++|+.+|..|++.|.+|+++++.+.+.        +                             .+.+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~  170 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL  170 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence            45789999999999999999999999999999876541        0                             0111


Q ss_pred             hh----c-cCCCeEEcCceeEEecC---C---cEEEe---CC--CEEeeceEEEccCcccCC
Q 044575          247 VI----S-KHNNLHLHPQIDCLRED---G---RVTFV---DG--CWVTADTILYCTGYSYSF  292 (454)
Q Consensus       247 ~l----~-~~~~i~~~~~v~~v~~~---~---~v~~~---dG--~~i~~D~vI~atG~~~~~  292 (454)
                      .+    . ..+.++.++.|+++..+   +   .|.+.   +|  +++++|.||.|+|..+..
T Consensus       171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            11    1 12467888889988742   2   45563   55  468899999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.75  E-value=3.9e-05  Score=78.13  Aligned_cols=89  Identities=19%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--------cc-------------ch-------------------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--------EG-------------LS-------------------  245 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--------~~-------------~~-------------------  245 (454)
                      .+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+.        ++             +.                   
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            579999999999999999999999999999965431        00             00                   


Q ss_pred             -----hhhccCC---CeEEcCceeEEecC-C----cEEEeCCCEEeeceEEEccC--cccCCcC
Q 044575          246 -----KVISKHN---NLHLHPQIDCLRED-G----RVTFVDGCWVTADTILYCTG--YSYSFPF  294 (454)
Q Consensus       246 -----~~l~~~~---~i~~~~~v~~v~~~-~----~v~~~dG~~i~~D~vI~atG--~~~~~~~  294 (454)
                           +...+..   .+..+..|+++..+ +    .|.+.+|+++.+|.||+|||  ..|..|-
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~  165 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPA  165 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCC
Confidence                 0011111   46777888887522 2    57788999999999999999  4555443

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.74  E-value=3e-05  Score=77.02  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcC--eEEEecccCC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAK--EVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~--~V~l~~r~~~  239 (454)
                      .++|+|||+|++|+.+|..|++.|.  +|+++++.+.
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~   42 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   42 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCC
Confidence            3689999999999999999999999  9999998753

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.73  E-value=7.3e-05  Score=72.93  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc------c----hhhh--------------------c-----
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG------L----SKVI--------------------S-----  249 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~------~----~~~l--------------------~-----  249 (454)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.....      +    .+.+                    .     
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            368999999999999999999999999999987653000      0    0000                    0     


Q ss_pred             -------------------------cCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575          250 -------------------------KHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       250 -------------------------~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                               ...+++.+..|+++..++   .|++.+|+++++|.||.|+|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence                                     013455667788876432   467788999999999999998743

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.73  E-value=0.0001  Score=69.30  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++.+.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            47899999999999999999999999999998764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.70  E-value=4.8e-05  Score=77.31  Aligned_cols=88  Identities=18%  Similarity=0.215  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHh-hhcCeEEEecccCCcC--------cc---------------------------------
Q 044575          206 EVVVVVGNSLSGQDISMELV-EVAKEVHLSAKSLNIS--------EG---------------------------------  243 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~-~~~~~V~l~~r~~~~~--------~~---------------------------------  243 (454)
                      .+|+|||+|++|+.+|..|+ +.|.+|+++++.+.+.        +.                                 
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 8999999999965431        00                                 


Q ss_pred             ch----hhhccCC---CeEEcCceeEEecCC-----cEEEeCCCEEeeceEEEccCc--ccCCc
Q 044575          244 LS----KVISKHN---NLHLHPQIDCLREDG-----RVTFVDGCWVTADTILYCTGY--SYSFP  293 (454)
Q Consensus       244 ~~----~~l~~~~---~i~~~~~v~~v~~~~-----~v~~~dG~~i~~D~vI~atG~--~~~~~  293 (454)
                      +.    +...+..   .+..++.|+++..+.     .|.+.+|+++.+|.||.|||.  .|..|
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p  152 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFP  152 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCC
Confidence            00    0011111   567788888876322     577888999999999999995  55544

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.68  E-value=2e-05  Score=75.46  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC------CcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG------HRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g------~~v~vie~~~~   46 (454)
                      +||+|||||++|+++|.+|++.|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            38999999999999999999998      89999999763

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.67  E-value=4.8e-05  Score=72.70  Aligned_cols=35  Identities=34%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      +||+|||||+||+.||..|++.|.+|+|+|+++..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence            68999999999999999999999999999998744

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.66  E-value=5.8e-05  Score=76.80  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC-------------------------c------cc----------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS-------------------------E------GL----------  244 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~-------------------------~------~~----------  244 (454)
                      .+|+|||+|++|+-+|..|.+.+.+|+++++.+.+.                         +      ..          
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            579999999999999999999999999999976430                         0      00          


Q ss_pred             hhh----hccC---CCeEEcCceeEEecCC-----cEEEeCCCEEeeceEEEccC--cccCCcC
Q 044575          245 SKV----ISKH---NNLHLHPQIDCLREDG-----RVTFVDGCWVTADTILYCTG--YSYSFPF  294 (454)
Q Consensus       245 ~~~----l~~~---~~i~~~~~v~~v~~~~-----~v~~~dG~~i~~D~vI~atG--~~~~~~~  294 (454)
                      .+.    ..+.   ..+..+..|+++..+.     .|.+.+|+++.+|.||+|||  ..|..|-
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~  153 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPD  153 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CC
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCC
Confidence            000    0111   1466777888875321     57778898999999999999  4555443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.64  E-value=8.1e-05  Score=72.58  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            47999999999999999999999999999987543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.60  E-value=3.6e-05  Score=77.98  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            689999999999999999999999999999874

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.59  E-value=0.00021  Score=69.62  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC-----------c-c----chh-----------------------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS-----------E-G----LSK-----------------------  246 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~-----------~-~----~~~-----------------------  246 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+...           + .    +.+                       
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~g  106 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKG  106 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCCC
Confidence            589999999999999999999999999999875321           0 0    000                       


Q ss_pred             --------------------------hhcc---CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575          247 --------------------------VISK---HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       247 --------------------------~l~~---~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                                .+.+   ...++.+..|+++..++   .|++.||+++++|.||.|+|....
T Consensus       107 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          107 NILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             EEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence                                      0000   12467778888886443   467788988999999999998754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.56  E-value=7.8e-05  Score=73.17  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||||++|+.+|..+++.|.+|+++++.+..
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~   62 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP   62 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            47999999999999999999999999999987753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.55  E-value=0.00013  Score=72.51  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..++|+|||||..|+-+|..+.+.|. +|+++++++
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            35789999999999999999999998 599999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.47  E-value=0.00033  Score=76.20  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+                                            
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~--------------------------------------------  319 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSI--------------------------------------------  319 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC--------------------------------------------
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc--------------------------------------------
Confidence            368999999999999999999999999999987532                                            


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc-CCCccccCCcCCcEEEEEee--cC--CCeEEEEEeCEE
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML-DCGELIIGNDLIKWVVKSKE--KK--ADKVVEEVFDAV  166 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~~~~~~~~~~~v~~~~--~~--~~~~~~~~~d~v  166 (454)
                             . ..     .+.+++.++.  +++++.|.+|... ++.         ...|++.+  ..  ++...++.+|.|
T Consensus       320 -------~-~~-----~~~l~~~GV~--v~~~~~v~~i~~~~~~~---------v~~v~~~~~~~~~~~G~~~~i~~D~V  375 (965)
T 2gag_A          320 -------S-AA-----AAQAVADGVQ--VISGSVVVDTEADENGE---------LSAIVVAELDEARELGGTQRFEADVL  375 (965)
T ss_dssp             -------C-HH-----HHHHHHTTCC--EEETEEEEEEEECTTSC---------EEEEEEEEECTTCCEEEEEEEECSEE
T ss_pred             -------c-hh-----HHHHHhCCeE--EEeCCEeEEEeccCCCC---------EEEEEEEeccccCCCCceEEEEcCEE
Confidence                   0 11     2334567888  9999999999863 211         22455554  10  122357899999


Q ss_pred             EEccCCCCCCCC
Q 044575          167 VVATGHYSYPRL  178 (454)
Q Consensus       167 ViAtG~~~~p~~  178 (454)
                      |+|+|  ..|+.
T Consensus       376 v~a~G--~~P~~  385 (965)
T 2gag_A          376 AVAGG--FNPVV  385 (965)
T ss_dssp             EEECC--EEECC
T ss_pred             EECCC--cCcCh
Confidence            99999  67764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.46  E-value=4.1e-05  Score=79.49  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcC--------CcEEEEeeCC-CC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEG--------HRVVVLEQNH-DV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g--------~~v~vie~~~-~~   47 (454)
                      .++|+|||||++||+||..|.+.|        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            478999999999999999999998        9999999998 88

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.46  E-value=0.00064  Score=67.55  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             CCcEEEECcChHHHHHHHHHH--------------------HcCC-cEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELR--------------------KEGH-RVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~--------------------~~g~-~v~vie~~~~   46 (454)
                      .++|+|||+|..|+.+|..|+                    +.+. +|+|+++++.
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            578999999999999999998                    5677 7999998763

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.45  E-value=0.00021  Score=72.74  Aligned_cols=84  Identities=24%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--------cc-------------chh------------------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--------EG-------------LSK------------------  246 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--------~~-------------~~~------------------  246 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+.        +.             +..                  
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999875430        00             000                  


Q ss_pred             --hh----ccC---CCeEEcCceeEEecC---C--cEEEeCCCEEeeceEEEccCcc
Q 044575          247 --VI----SKH---NNLHLHPQIDCLRED---G--RVTFVDGCWVTADTILYCTGYS  289 (454)
Q Consensus       247 --~l----~~~---~~i~~~~~v~~v~~~---~--~v~~~dG~~i~~D~vI~atG~~  289 (454)
                        .+    .+.   ..+..++.|.++..+   +  .|.+.+|+++.+|.||.|||..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence              00    111   246677888887532   1  4677789899999999999963

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.45  E-value=0.00018  Score=68.60  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh---hcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVE---VAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~---~~~~V~l~~r~~~  239 (454)
                      ++|+|||+|.+|+-+|..|++   .|.+|+++++++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            379999999999999999999   8999999998643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.42  E-value=0.00029  Score=74.28  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             CCcEEEEC--cChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIG--AGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIG--aG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||  ||..|+.+|..|++.|.+|+++++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            46899999  99999999999999999999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.36  E-value=0.00038  Score=72.79  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=25.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEE
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVV   40 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~v   40 (454)
                      .++|+|||||+.|+.+|..|++.|.+|++
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence            47899999999999999999998876654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.36  E-value=0.00017  Score=73.99  Aligned_cols=48  Identities=27%  Similarity=0.508  Sum_probs=41.6

Q ss_pred             CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575            1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus         1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ||.+    |+..+||+|||+|..|...|..|++.|.+|++||+++++||.|.
T Consensus         1 m~~~----~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            1 MADN----LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             --CC----CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCcc----CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence            6643    33469999999999999999999999999999999999999875

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.35  E-value=0.00011  Score=74.41  Aligned_cols=36  Identities=22%  Similarity=0.535  Sum_probs=32.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~~   46 (454)
                      ..+|+||||||+||+.+|.+|++ .+++|+|+|+.+.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46999999999999999999998 5789999999765

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.34  E-value=0.00017  Score=70.82  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.34  E-value=0.00078  Score=66.85  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--------------------CC-cEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--------------------GH-RVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--------------------g~-~v~vie~~~~   46 (454)
                      .++|+|||+|..|+.+|..|++.                    |. +|+|+++++.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            57899999999999999999874                    54 9999999763

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.27  E-value=0.00033  Score=68.33  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||+|++|+.+|..+++.|.+|+++++.+.+
T Consensus         6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (401)
T 2gqf_A            6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (401)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            6999999999999999999999999999987643

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.24  E-value=0.00036  Score=71.49  Aligned_cols=33  Identities=15%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||||..|+++|..+++.|.+|.++++..
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            479999999999999999999999999999863

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.23  E-value=0.0002  Score=72.94  Aligned_cols=36  Identities=33%  Similarity=0.693  Sum_probs=33.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+|++|||||++|+.+|.+|++.|.+|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            468999999999999999999999999999999764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.23  E-value=0.0015  Score=71.56  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|||||..|+-+|..+++.|. +|+++++++
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3589999999999999999999997 899999865

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.22  E-value=8.6e-05  Score=75.44  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=33.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      ..+|+||||||+||+.+|.+|++ |.+|+|+|+....
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            45899999999999999999999 9999999998764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.14  E-value=0.00024  Score=72.25  Aligned_cols=47  Identities=23%  Similarity=0.375  Sum_probs=39.4

Q ss_pred             CCCCchhhcc-CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCC
Q 044575            1 MVSDDHQQCA-QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDV   47 (454)
Q Consensus         1 m~~~~~~~~~-~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~   47 (454)
                      ||-.+...|. ..+|++|||+|++|+.+|.+|++. |.+|+|+|+....
T Consensus         1 ~~~~~~~~~~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A            1 MHIDNIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEESCGGGCCCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CccccccccccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            6655555554 468999999999999999999998 8999999998654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.10  E-value=0.00062  Score=69.52  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||||..|+++|..+++.|.+|.++++..
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            369999999999999999999999999999863

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.09  E-value=0.00099  Score=68.29  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            3689999999999999999999999999999874

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.09  E-value=0.00064  Score=66.00  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999998763

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.08  E-value=0.00066  Score=69.51  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||||..|+++|..+++.|.+|.++++..
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            479999999999999999999999999999863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.05  E-value=0.0002  Score=71.08  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCC--cEEEeCCCEEeece
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDG--RVTFVDGCWVTADT  281 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~--~v~~~dG~~i~~D~  281 (454)
                      .-++|+|+|||.+|.-+|..|.+ ..+|+++++.......+.+.+.+         ..-+.+|+  .-.+.....-++|.
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d~~r~~~la~~l~~---------~~Vi~GD~td~~~L~ee~i~~~D~  303 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERNLQRAEKLSEELEN---------TIVFCGDAADQELLTEENIDQVDV  303 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHCTT---------SEEEESCTTCHHHHHHTTGGGCSE
T ss_pred             cccEEEEEcchHHHHHHHHHhhh-cCceEEEecCHHHHHHHHHHCCC---------ceEEeccccchhhHhhcCchhhcE
Confidence            45899999999999999999865 47899999877665555554421         11122332  01112222345999


Q ss_pred             EEEccCcc
Q 044575          282 ILYCTGYS  289 (454)
Q Consensus       282 vI~atG~~  289 (454)
                      +|.+|+--
T Consensus       304 ~ia~T~~D  311 (461)
T 4g65_A          304 FIALTNED  311 (461)
T ss_dssp             EEECCSCH
T ss_pred             EEEcccCc
Confidence            99999975

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.03  E-value=0.00066  Score=66.36  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCe-EEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKE-VHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~-V~l~~r~~~  239 (454)
                      .+|+|||||++|+-+|..|++.|.+ |+++++.+.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            4799999999999999999999999 999998765

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.03  E-value=0.00081  Score=66.62  Aligned_cols=34  Identities=26%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~   60 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   60 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            3699999999999999999999999999998764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.99  E-value=0.00038  Score=71.06  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~   46 (454)
                      +.+|+||||||.||+.+|.+|++.+ .+|+|+|+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4589999999999999999999987 69999999875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.97  E-value=0.00059  Score=69.99  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=33.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDV   47 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~~~   47 (454)
                      ..+|++|||+|++|+.+|.+|.+ .|.+|+|+|+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            46899999999999999999999 79999999997654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.97  E-value=0.00055  Score=68.91  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG   48 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G   48 (454)
                      .+|++|||+|++|+.+|..|.+.|.+|+|+|+....+
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4899999999999999999999999999999987554

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=96.93  E-value=0.0013  Score=66.42  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            479999999999999999999999999999876

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.92  E-value=0.0013  Score=62.95  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.91  E-value=0.0017  Score=65.32  Aligned_cols=35  Identities=23%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus        13 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR   47 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            57999999999999999999999999999987654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.87  E-value=0.00069  Score=68.27  Aligned_cols=37  Identities=30%  Similarity=0.400  Sum_probs=33.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ...+|++|||+|++|+.+|.+|.+.|.+|+|+|+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4568999999999999999999999999999999764

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.85  E-value=0.00074  Score=68.93  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~   45 (454)
                      +.+|+||||||.||+.+|.+|++. +.+|+|+|+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999975 78999999987

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.80  E-value=0.00059  Score=68.50  Aligned_cols=87  Identities=15%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc----------c-----------hhhhccCCCeEEcCceeEEe
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG----------L-----------SKVISKHNNLHLHPQIDCLR  264 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~----------~-----------~~~l~~~~~i~~~~~v~~v~  264 (454)
                      .+|+|||+|+.|+.+|..|++. .+|+++++.+.+...          +           .+.+....+++.+..+.++.
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i~  187 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGVF  187 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCCE
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            4799999999999999999999 999999987755110          0           01111112334444555444


Q ss_pred             cCC-cEEE---eCCC--EEeeceEEEccCcccCCc
Q 044575          265 EDG-RVTF---VDGC--WVTADTILYCTGYSYSFP  293 (454)
Q Consensus       265 ~~~-~v~~---~dG~--~i~~D~vI~atG~~~~~~  293 (454)
                      .++ .+..   .+++  .+.+|.+|+|||..|..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          188 DKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             ECSSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             cCCcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            332 2322   4454  578999999999987654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.75  E-value=0.0018  Score=65.10  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   46 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER   46 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            57999999999999999999999999999987654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=96.74  E-value=0.00093  Score=68.27  Aligned_cols=35  Identities=26%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP   84 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            46999999999999999999999999999987653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=96.74  E-value=0.0012  Score=65.47  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            699999999999999999999999999998754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.73  E-value=0.0026  Score=66.55  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  305 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADE  305 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            689999999999999999999999999999853

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=96.67  E-value=0.0012  Score=63.50  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ++|+|||+|.+|+-+|..|+ .|.+|+++++.+
T Consensus        10 ~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A           10 ADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             CSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            68999999999999999999 599999999875

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.61  E-value=0.00075  Score=68.70  Aligned_cols=36  Identities=33%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~~~   47 (454)
                      .+|++|||||.||+.+|.+|++ .+.+|+|+|+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 68999999997654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.57  E-value=0.0033  Score=60.50  Aligned_cols=33  Identities=30%  Similarity=0.503  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999999863

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.57  E-value=0.0031  Score=64.13  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            37999999999999999999999999999987644

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.56  E-value=0.0028  Score=63.73  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~  240 (454)
                      -.|+|||||.+|+-+|..|++. |.+|+++++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            4699999999999999999985 8999999988766

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.54  E-value=0.0034  Score=60.48  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||||++|+-+|..|++.|.+|++++|.+.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4999999999999999999999999999987654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.53  E-value=0.0041  Score=63.54  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      -.|+|||+|.+|+-+|..+++.|.+|+++++.+.
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~  155 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF  155 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3799999999999999999999999999998764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=96.51  E-value=0.0028  Score=64.20  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+..
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~   40 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL   40 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            47999999999999999999999999999987643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.49  E-value=0.0047  Score=64.67  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            679999999999999999999999999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=96.48  E-value=0.0053  Score=59.51  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh-hc-CeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVE-VA-KEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~-~~-~~V~l~~r~~  238 (454)
                      .+|+|||+|.+|+-+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 89 8999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.41  E-value=0.01  Score=59.47  Aligned_cols=36  Identities=22%  Similarity=0.437  Sum_probs=31.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~   46 (454)
                      ..++|+|||+|.+|...+..|++.  +.+|+++-|++.
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            357899999999999999999875  679999998763

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.30  E-value=0.0068  Score=61.96  Aligned_cols=35  Identities=29%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..|+|||+|.+|+.+|..+++.|.+|+++++.+..
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~  161 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI  161 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            47999999999999999999999999999987644

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.20  E-value=0.0041  Score=54.88  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      +..+++|+|||||.+|...+..|.+.|.+|+++.+.  ..+.+.++... ..      ++-+. ..   +.++..-.+|+
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~--~~~~l~~l~~~-~~------i~~i~-~~---~~~~dL~~adL   94 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT--VSAEINEWEAK-GQ------LRVKR-KK---VGEEDLLNVFF   94 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS--CCHHHHHHHHT-TS------CEEEC-SC---CCGGGSSSCSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHc-CC------cEEEE-CC---CCHhHhCCCCE
Confidence            357899999999999999999999999999999864  33444443322 11      21111 10   11111223999


Q ss_pred             EEEccCcccC
Q 044575          282 ILYCTGYSYS  291 (454)
Q Consensus       282 vI~atG~~~~  291 (454)
                      ||.|||-...
T Consensus        95 VIaAT~d~~~  104 (223)
T 3dfz_A           95 IVVATNDQAV  104 (223)
T ss_dssp             EEECCCCTHH
T ss_pred             EEECCCCHHH
Confidence            9999998643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.08  E-value=0.0062  Score=50.53  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||+|.-|..+|..|.+.|.+|+++|+++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.08  E-value=0.0071  Score=49.23  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||+|.-|...|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999975

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.07  E-value=0.0033  Score=56.77  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.03  E-value=0.0084  Score=49.58  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      ..+|+|+|+|.-|...|..|.+.|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            367999999999999999999999999999986

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=95.99  E-value=0.0083  Score=62.18  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh-hcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVE-VAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~-~~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+-+|..|++ .|.+|+++++.+..
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            479999999999999999999 99999999987643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.96  E-value=0.0081  Score=48.83  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|+|+|.-|...|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            589999999999999999999999999999865

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=95.89  E-value=0.009  Score=56.38  Aligned_cols=35  Identities=14%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~  240 (454)
                      -.|+|||+|++|+-+|..|++.  |.+|+++++.+.+
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            3699999999999999999997  9999999987543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.88  E-value=0.023  Score=59.94  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+.+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~  369 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKD  369 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            34789999999999999999999999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.88  E-value=0.0083  Score=48.42  Aligned_cols=33  Identities=24%  Similarity=0.565  Sum_probs=30.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|...|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.74  E-value=0.0087  Score=46.67  Aligned_cols=33  Identities=33%  Similarity=0.548  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~   45 (454)
                      ++|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            57999999999999999999999 8999999864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.66  E-value=0.024  Score=51.93  Aligned_cols=150  Identities=13%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeec
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTAD  280 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D  280 (454)
                      ...+++++|+|+|-.|.-++..|.+.|. +|+++.|+......+.+.+                  ..+.+.+=..+++|
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~------------------~~~~~~~l~~l~~D  180 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF------------------KVISYDELSNLKGD  180 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS------------------EEEEHHHHTTCCCS
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc------------------CcccHHHHHhccCC


Q ss_pred             eEEEcc--CcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEe-----cccccccchhHHHHHHHHHHHHHcCC
Q 044575          281 TILYCT--GYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFV-----GIPRKLIGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       281 ~vI~at--G~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~i-----G~~~~~~~~~~a~~qa~~~a~~i~g~  353 (454)
                      .||-||  |..|+.+-.. -..-.+.....  .|+-++.+.  +.-+.-     | +.......+...||...-+.|.|+
T Consensus       181 ivInaTp~Gm~~~~~~~p-i~~~~l~~~~~--v~DlvY~P~--~T~ll~~A~~~G-~~~~~Gl~MLv~Qa~~~f~lwtg~  254 (282)
T 3fbt_A          181 VIINCTPKGMYPKEGESP-VDKEVVAKFSS--AVDLIYNPV--ETLFLKYARESG-VKAVNGLYMLVSQAAASEEIWNDI  254 (282)
T ss_dssp             EEEECSSTTSTTSTTCCS-SCHHHHTTCSE--EEESCCSSS--SCHHHHHHHHTT-CEEECSHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCccCccCCCccCC-CCHHHcCCCCE--EEEEeeCCC--CCHHHHHHHHCc-CeEeCcHHHHHHHHHHHHHHHcCC


Q ss_pred             CCCCCHHHHHHHHHHHHhhhhhcC
Q 044575          354 RTLPSWDQMMQSVKEFYHSRDVAG  377 (454)
Q Consensus       354 ~~lp~~~~~~~~~~~~~~~~~~~~  377 (454)
                        .|+.+.|.+.+.......+..|
T Consensus       255 --~~~~~~~~~~~~~~~~~~~~~~  276 (282)
T 3fbt_A          255 --SIDEIIVDEIFEVLEEKIKSEG  276 (282)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHC--
T ss_pred             --CCCHHHHHHHHHHHHHhhhccc

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.52  E-value=0.011  Score=58.35  Aligned_cols=81  Identities=15%  Similarity=0.152  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCC-CeEEcCceeEEecCCcEEEeCCCE-Ee-
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLHLHPQIDCLREDGRVTFVDGCW-VT-  278 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~-~i~~~~~v~~v~~~~~v~~~dG~~-i~-  278 (454)
                      ++++|+|+|||.|.+|+-+|..|.+.|.+|+.+.+++...+...+.+.+.+ .+..+..             ..+. -. 
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~-------------~~~~~~~~   72 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSH-------------PLELLDED   72 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCC-------------CGGGGGSC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCC-------------hHHhhcCC
Confidence            457899999999999999999999999999999986532222223333221 1211111             0001 12 


Q ss_pred             eceEEEccCcccCCcCC
Q 044575          279 ADTILYCTGYSYSFPFL  295 (454)
Q Consensus       279 ~D~vI~atG~~~~~~~l  295 (454)
                      +|.||.++|..++.|.+
T Consensus        73 ~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           73 FCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             EEEEEECTTSCTTSHHH
T ss_pred             CCEEEECCcCCCCChhH
Confidence            89999999999887764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.37  E-value=0.021  Score=58.28  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+..|..+++.|.+|+++++.+..
T Consensus       127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP  161 (572)
T ss_dssp             CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            57999999999999999999999999999987643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.32  E-value=0.017  Score=46.80  Aligned_cols=33  Identities=36%  Similarity=0.580  Sum_probs=30.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|+|+|.-|...|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999854

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.24  E-value=0.018  Score=50.73  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +.++|+|||||..|...|..|.+.|.+|+|++++
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4689999999999999999999999999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.17  E-value=0.016  Score=47.92  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          198 RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       198 ~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .-++...+++|+|+|+|..|..+|..|...|.+|+++.|++..
T Consensus        12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3455567789999999999999999999999999999987643

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.14  E-value=0.0081  Score=60.16  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |+|+|||+|.+|+-.|..|++.|.+|+++++++.+
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            68999999999999999999999999999998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.09  E-value=0.022  Score=48.49  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~   45 (454)
                      ..+|+|||+|..|..+|+.|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45899999999999999999999 99999999865

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.06  E-value=0.021  Score=52.54  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999999865

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.92  E-value=0.019  Score=52.35  Aligned_cols=35  Identities=23%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||||..|...|..|.+.|.+|+||++..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            46889999999999999999999999999999854

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.81  E-value=0.02  Score=53.06  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=32.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |+..++|.|||.|.-|...|..|++.|++|+++|+++
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4445789999999999999999999999999999875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.69  E-value=0.03  Score=53.86  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|||+|..|+.+|+.++..|.+|+++|+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34789999999999999999999999999999876

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.60  E-value=0.028  Score=55.46  Aligned_cols=35  Identities=40%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||.|.+|+++|+.|+++|++|++.|+++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999864

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.57  E-value=0.017  Score=56.59  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ++|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            689999999999999999999999999999876

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.57  E-value=0.021  Score=56.13  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||.|.+|+++|+.|+++|++|+++|.+.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            4689999999999999999999999999999865

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.46  E-value=0.03  Score=49.20  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|||+|.-|...|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999865

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.44  E-value=0.032  Score=53.23  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|||+|..|+.+|+.|+..|.+|+++|+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.39  E-value=0.034  Score=51.28  Aligned_cols=44  Identities=32%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |-++.+.....+++|.|||+|.-|-..|..|+ .|++|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A            1 MGSDKIHHHHHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -----------CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCccccccccCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            44445544556789999999999999999999 999999999865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.19  E-value=0.042  Score=51.78  Aligned_cols=33  Identities=24%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .+|+|||||.-|.+.|..|++.|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999865

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.16  E-value=0.043  Score=52.26  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=31.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~   44 (454)
                      ...+|||+|||.+|+.+|+.|...|. +|+++|++
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            35689999999999999999999999 99999986

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.12  E-value=0.033  Score=55.64  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++|+|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            478999999999999999999999999999987654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.12  E-value=0.046  Score=51.17  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|||+|.-|.+.|..|++.|+ +|+++|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3689999999999999999999998 999999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.09  E-value=0.035  Score=54.13  Aligned_cols=35  Identities=31%  Similarity=0.259  Sum_probs=32.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            37999999999999999999999999999997765

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=94.06  E-value=0.035  Score=53.35  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~  240 (454)
                      ++|+|||||++|+-+|..|++.  |.+|+++++.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3699999999999999999999  9999999997654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.05  E-value=0.044  Score=52.10  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+|+|||+|.-|...|..|++.|++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.98  E-value=0.048  Score=51.83  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~   44 (454)
                      +..+|+|+|||.+|+.+|+.|...|. +|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45789999999999999999999998 89999986

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.93  E-value=0.057  Score=52.08  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +...++|+|||+|..|..+++.+++.|++|+++|..+
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            3456799999999999999999999999999999754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.81  E-value=0.039  Score=50.24  Aligned_cols=36  Identities=14%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++++|+|||+|.+|...+..|.+.|.+|+++....
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            467999999999999999999999999999998654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.80  E-value=0.064  Score=50.26  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|||||..|...|..|+..|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            3589999999999999999999998 999999764

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.72  E-value=0.037  Score=53.00  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ++|+|||+|..|++.|..+++.|.+|+++++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999999866

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.71  E-value=0.042  Score=53.47  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            37999999999999999999999999999998664

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.65  E-value=0.057  Score=52.26  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||+|..|+.+|..++..|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5789999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.59  E-value=0.062  Score=53.10  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHc-CC-cEEEEeeCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKE-GH-RVVVLEQNHD   46 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~-g~-~v~vie~~~~   46 (454)
                      +.+.++|+|||+|.-|+..|..|++. |+ +|+++|+++.
T Consensus        15 ~~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           15 RGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             HCSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34457899999999999999999999 99 9999998764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.55  E-value=0.07  Score=50.88  Aligned_cols=34  Identities=32%  Similarity=0.628  Sum_probs=31.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ++|+|||||..|..+++.+++.|++++++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6899999999999999999999999999997654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.48  E-value=0.073  Score=49.36  Aligned_cols=34  Identities=38%  Similarity=0.528  Sum_probs=31.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3679999999999999999999999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.48  E-value=0.041  Score=52.71  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            579999999999999999999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.44  E-value=0.071  Score=51.33  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|||+|..|+.++..++..|.+|+++|+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999865

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.37  E-value=0.081  Score=46.13  Aligned_cols=35  Identities=17%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .++|.|||+|.-|.+.|..|++.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=93.28  E-value=0.049  Score=53.18  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|||+|.+|+-.|..|++.|.+|++++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~   35 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGER   35 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            699999999999999999999999999998654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.27  E-value=0.076  Score=49.50  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||||.-|-..|..++..|++|+++|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.27  E-value=0.033  Score=45.35  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||+|..|...|..|.+.|.+|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            5789999999999999999999999999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.27  E-value=0.048  Score=52.58  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            379999999999999999999999999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.26  E-value=0.074  Score=50.96  Aligned_cols=37  Identities=14%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc-CCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS-LNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~-~~~  240 (454)
                      ...+|+|||+|.+|+-+|..|.+.|.+|++++++ +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4579999999999999999999999999999998 655

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.26  E-value=0.079  Score=49.34  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|.|||+|.-|...|..|++.|++|+++++++
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34789999999999999999999999999999865

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.25  E-value=0.076  Score=51.79  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||.|.-||..|..+++.|++|+.||-++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4689999999999999999999999999999754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.21  E-value=0.084  Score=49.57  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHH-HHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLV-AARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~-aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||.|.+|++ +|+.|+++|++|++.|+++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            368999999999996 7888899999999999865

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.19  E-value=0.054  Score=53.64  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcC--eEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAK--EVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~--~V~l~~r~~~~  240 (454)
                      ++|+|||||.+|+-.|..|++.|.  +|+++++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            589999999999999999999999  99999987765

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.18  E-value=0.056  Score=52.62  Aligned_cols=36  Identities=11%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~  240 (454)
                      ..+|+|||+|.+|+-.|..|++.| .+|+++++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            368999999999999999999999 899999998766

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.08  E-value=0.086  Score=49.36  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|.+.|..|.+.|.+|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.08  E-value=0.091  Score=48.17  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|||+|.-|...|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            69999999999999999999999999999865

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.07  E-value=0.043  Score=52.36  Aligned_cols=33  Identities=9%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.06  E-value=0.091  Score=50.12  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=31.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|+|+|..|..++..|+..|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3789999999999999999999999999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.05  E-value=0.091  Score=49.02  Aligned_cols=34  Identities=29%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|.|||+|.-|...|..|.+.|++|+++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.04  E-value=0.056  Score=51.85  Aligned_cols=33  Identities=21%  Similarity=0.139  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=92.99  E-value=0.048  Score=53.75  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc------CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA------KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~------~~V~l~~r~~~~  240 (454)
                      ++|+|||||.+|+-+|..|++.|      .+|+++++++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            58999999999999999999999      899999987654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.94  E-value=0.084  Score=52.37  Aligned_cols=34  Identities=38%  Similarity=0.626  Sum_probs=31.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=92.93  E-value=0.075  Score=52.86  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            468999999999999999999999999999998775

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.92  E-value=0.1  Score=49.25  Aligned_cols=32  Identities=28%  Similarity=0.565  Sum_probs=30.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      ++|+|||+|.-|.+.|..|++.|++|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            57999999999999999999999999999984

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.89  E-value=0.092  Score=49.97  Aligned_cols=37  Identities=41%  Similarity=0.529  Sum_probs=32.0

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |++.++|.|||.|.-|...|..|++.|++|+++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4556789999999999999999999999999999865

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.68  E-value=0.11  Score=48.39  Aligned_cols=34  Identities=35%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~   44 (454)
                      +..+|+|||+|.-|.+.|..|+..|+ +|+++|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            35689999999999999999999999 99999986

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.68  E-value=0.073  Score=50.63  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            57999999999999999999999999999975

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.67  E-value=0.13  Score=47.02  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=31.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|.|+|+-|...+..|.+.|++|+++.++.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999999999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.61  E-value=0.094  Score=48.87  Aligned_cols=33  Identities=27%  Similarity=0.468  Sum_probs=30.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|.+.|..|.+.|.+|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999853

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.61  E-value=0.11  Score=49.52  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.59  E-value=0.13  Score=46.70  Aligned_cols=34  Identities=38%  Similarity=0.549  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++++|||+|-+|-++|..|.+.|.+|+|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999999999999999999999999865

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=92.58  E-value=0.081  Score=46.45  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             CcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|.|| |.-|...+..|.+.|++|+++.|++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            68999996 9999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.56  E-value=0.11  Score=48.53  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      .+|+|||+|.-|...|..|++.|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999999998  999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.53  E-value=0.11  Score=46.78  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|||+|-.|..+|+.|++.|. +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4789999999999999999999997 899999853

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.51  E-value=0.1  Score=47.59  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|+|||+-|-..+..|.+.|++|+++.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            579999999999999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.48  E-value=0.11  Score=48.26  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|...|..|.+.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            379999999999999999999999999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.45  E-value=0.1  Score=51.25  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999865

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=92.40  E-value=0.087  Score=50.71  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=32.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            479999999999999999999999999999987653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.37  E-value=0.11  Score=48.68  Aligned_cols=76  Identities=11%  Similarity=0.022  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCCHHH-HHHHHhhhcCeEEEecccCCcCccchhhhccCC-CeEEcCceeEEecCCcEEEeCCCEE---ee
Q 044575          205 NEVVVVVGNSLSGQD-ISMELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLHLHPQIDCLREDGRVTFVDGCWV---TA  279 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e-~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~-~i~~~~~v~~v~~~~~v~~~dG~~i---~~  279 (454)
                      .++|.|||.|.+|+. +|..|.+.|.+|+.++++...  ...+.+.+.+ .+..+        .      +.+.+   .+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~--~~~~~L~~~gi~v~~g--------~------~~~~l~~~~~   67 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP--PMSTQLEALGIDVYEG--------F------DAAQLDEFKA   67 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT--THHHHHHHTTCEEEES--------C------CGGGGGSCCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc--HHHHHHHhCCCEEECC--------C------CHHHcCCCCC
Confidence            479999999999997 888999999999999986531  1222332221 11111        0      01111   48


Q ss_pred             ceEEEccCcccCCcCCC
Q 044575          280 DTILYCTGYSYSFPFLD  296 (454)
Q Consensus       280 D~vI~atG~~~~~~~l~  296 (454)
                      |.||.+.|..++.|.+.
T Consensus        68 d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           68 DVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             SEEEECTTCCTTCHHHH
T ss_pred             CEEEECCCcCCCCHHHH
Confidence            99999999999888753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.34  E-value=0.1  Score=42.79  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++++|+|+|..|..++..|.+.|.+|+++.+.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4789999999999999999999999999999863

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=92.33  E-value=0.11  Score=47.98  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+|.|||+|.-|...|..|.+.|++|+++++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=92.28  E-value=0.077  Score=53.26  Aligned_cols=35  Identities=11%  Similarity=0.286  Sum_probs=32.4

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+-.|..|++.| .+|+++++++++
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            58999999999999999999999 999999987755

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.27  E-value=0.14  Score=49.96  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|+|||+|..|...+..+++.|++|+++|..+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45789999999999999999999999999998654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.27  E-value=0.13  Score=49.10  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=31.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|+|+|..|..+|+.++..|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.25  E-value=0.14  Score=45.82  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5789999999999999999999999999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.24  E-value=0.14  Score=46.66  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++++|+|+|-.|.++|..|++.|.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=92.23  E-value=0.085  Score=49.90  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc------CeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA------KEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~------~~V~l~~r~~  238 (454)
                      +|+|||+|.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.22  E-value=0.1  Score=51.58  Aligned_cols=33  Identities=33%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|+..|..|++.  |++|+++|+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999999  79999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.15  E-value=0.08  Score=52.21  Aligned_cols=35  Identities=23%  Similarity=0.098  Sum_probs=33.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~   46 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   46 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            46999999999999999999999999999998876

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.14  E-value=0.12  Score=51.08  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||+|..|...++.|.+.|.+|+|++++.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            35789999999999999999999999999999753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.14  E-value=0.14  Score=49.08  Aligned_cols=35  Identities=43%  Similarity=0.548  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|||+|..|..+|+.++..|.+|+++|++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35789999999999999999999999999999864

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.11  E-value=0.079  Score=52.49  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            368999999999999999999999999999998765

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=92.10  E-value=0.17  Score=48.60  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=32.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..++|+|||+|.-|...++.+++.|++|+++|..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            457899999999999999999999999999997653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=92.06  E-value=0.098  Score=50.50  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus        30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            589999999999999999999999999999987653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.05  E-value=0.13  Score=47.56  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|.-|.+.|..|.+.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.04  E-value=0.16  Score=44.39  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||+|.-|...|..|.+.|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=92.03  E-value=0.08  Score=53.17  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+-.|..|++.|.+|+++++++++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            57999999999999999999999999999987654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.01  E-value=0.094  Score=40.52  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN  239 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~  239 (454)
                      .+++|+|+|+|.+|..++..|...| .+|+++.|++.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            3578999999999999999999999 88999988653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.99  E-value=0.14  Score=47.09  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|.|||+|.-|...|..|++.|++|+++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999865

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.99  E-value=0.15  Score=49.47  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=31.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+|+|||.|.-|...|+.|.+.|++|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999998654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.95  E-value=0.14  Score=47.49  Aligned_cols=32  Identities=31%  Similarity=0.485  Sum_probs=29.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +|+|||||..|.+.|..|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.95  E-value=0.083  Score=46.49  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEE-EeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVV-LEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~v-ie~~~   45 (454)
                      ..+|.|||+|.-|.+.|..|.+.|++|++ +++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            36899999999999999999999999998 77754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.81  E-value=0.16  Score=47.57  Aligned_cols=34  Identities=35%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      ..+|+|||+|..|.+.|..|+..|.  +++++|...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            3689999999999999999999987  899999854

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.81  E-value=0.12  Score=51.63  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=33.3

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            368999999999999999999999999999998765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.79  E-value=0.16  Score=44.87  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=31.6

Q ss_pred             CCCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|.|| |.-|...++.|++.|++|+++.|+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            3578999998 9999999999999999999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=91.78  E-value=0.15  Score=47.93  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|.|||+|.-|.+.|..|.+.|++|+++++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4789999999999999999999999999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=91.75  E-value=0.1  Score=50.63  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh--cCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEV--AKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~  238 (454)
                      ..|+|||+|.+|+-+|..|++.  |.+|+++++..
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999999  99999999753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.73  E-value=0.18  Score=47.29  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .+|+|||||.-|.+.|..|+..|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999998 999999865

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.71  E-value=0.16  Score=47.05  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|.|||+|.-|...|..|++.|++|+++++++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            589999999999999999999999999999865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.70  E-value=0.18  Score=43.19  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             CcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|+|| |.-|...++.|.+.|++|+++.+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            57999999 9999999999999999999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=91.67  E-value=0.11  Score=51.00  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=32.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            57999999999999999999999999999987654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=91.66  E-value=0.11  Score=52.45  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh---hcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVE---VAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~---~~~~V~l~~r~~  238 (454)
                      .+|+|||||.+|+-+|..|++   .|.+|+++++..
T Consensus         6 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            589999999999999999999   899999999854

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.65  E-value=0.17  Score=47.23  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      ..+|+|||+|..|.+.|..|+..+.  +++++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999987  899999754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.56  E-value=0.16  Score=46.88  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .++|+|||+|.+|.++|..|.+.|. +|++++|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999999998 999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.50  E-value=0.18  Score=49.47  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=32.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..+|.|||.|.-|+..|..|++.|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999764

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.49  E-value=0.1  Score=51.10  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~  239 (454)
                      .+|+|||+|.+|+-+|..|++.|. +|+++++.+.
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            479999999999999999999999 9999988654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.48  E-value=0.2  Score=46.83  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|||+|..|.+.|..|+..|+ +++++|..+
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4689999999999999999999988 999999865

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=91.46  E-value=0.13  Score=49.21  Aligned_cols=34  Identities=29%  Similarity=0.351  Sum_probs=31.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            6899999999999999999999999999987754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=91.44  E-value=0.15  Score=46.89  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|.|||.|.-|...|..|++.|++|+++++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            369999999999999999999999999999865

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=91.43  E-value=0.2  Score=46.41  Aligned_cols=34  Identities=35%  Similarity=0.562  Sum_probs=31.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||.|.-|...|..|++.|++|+++++++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999865

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=91.42  E-value=0.14  Score=50.13  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=91.41  E-value=0.12  Score=48.45  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~  240 (454)
                      +|+|||+|++|+-+|..|++.  +.+|+++++.+..
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            799999999999999999998  9999999986554

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=91.41  E-value=0.19  Score=48.61  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |+..++|+|||+|..|...++.+++.|++|++++ .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            4456799999999999999999999999999999 54

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=91.39  E-value=0.17  Score=47.23  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||+|.-|...|..|++.|++|+++++++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3589999999999999999999999999999865

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.35  E-value=0.14  Score=51.88  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhh---hcCeEEEecccC
Q 044575          205 NEVVVVVGNSLSGQDISMELVE---VAKEVHLSAKSL  238 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~---~~~~V~l~~r~~  238 (454)
                      ..+|+|||||.+|.-+|..|++   .|.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            3689999999999999999999   889999999854

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=91.35  E-value=0.21  Score=46.83  Aligned_cols=34  Identities=35%  Similarity=0.568  Sum_probs=30.8

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|.|| |.-|...++.|.+.|++|++++++.
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   47 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS   47 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCh
Confidence            347999996 9999999999999999999999865

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=91.34  E-value=0.12  Score=48.30  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhh--hcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVE--VAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~--~~~~V~l~~r~~~~  240 (454)
                      ....|+|||+|+.|+-.|..|++  .|.+|+++++.+.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            34579999999999999999975  58999999987654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=91.34  E-value=0.21  Score=46.08  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=31.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|.|||+|..|..+|+.|+..|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35789999999999999999999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=91.33  E-value=0.21  Score=46.24  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|+|||+|..|..+|+.|+..|.+|++++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35789999999999999999999999999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.33  E-value=0.15  Score=46.50  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++++|||+|-+|.++|..|.+.|.+|++++|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=91.32  E-value=0.078  Score=47.07  Aligned_cols=34  Identities=32%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|+|+|.-|...|..|.+.|+ |+++|+++
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            35689999999999999999999999 99999865

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=91.30  E-value=0.11  Score=50.18  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=32.8

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCcC
Q 044575          206 EVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNIS  241 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~~  241 (454)
                      .+|+|||+|.+|+-+|..|++. |.+|+++++++.+.
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            5799999999999999999999 99999999987653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.29  E-value=0.19  Score=47.20  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .++|+|.|| |.-|...+..|++.|++|+++++...
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            578999999 99999999999999999999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.28  E-value=0.13  Score=41.02  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +.+|+|+|+|..|..+|..|.+.+.+|+++.+++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~   38 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   38 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35899999999999999999999999999988643

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=91.27  E-value=0.19  Score=49.23  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            4689999999999999999999999999999875

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=91.26  E-value=0.13  Score=50.75  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~  240 (454)
                      .+|+|||+|.+|+-+|..|++.|  .+|+++++++.+
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            58999999999999999999999  999999987654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=91.26  E-value=0.2  Score=47.15  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|+|| |.-|...+..|.+.|++|+++.|++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            468999999 9999999999999999999999865

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=91.25  E-value=0.2  Score=46.40  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .++|+|.|| |.-|...+..|.+.|++|+++++...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            368999999 99999999999999999999998653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.25  E-value=0.17  Score=49.28  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|||+|.-|+..|..|++ |++|+++|+++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            4589999999999999999998 99999999865

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=91.25  E-value=0.11  Score=52.10  Aligned_cols=33  Identities=15%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      -.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            369999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.21  E-value=0.11  Score=41.79  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++++|+|+|..|..+|..|.+.|.+|+++.+.+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=91.14  E-value=0.11  Score=52.16  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhh---hcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVE---VAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~---~~~~V~l~~r~~  238 (454)
                      .+|+|||||.+|+-+|..|++   .|.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            479999999999999999999   899999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.06  E-value=0.12  Score=41.49  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+++|+|+|+|..|..++..|.+.|.+|+++.+.+
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999998754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.02  E-value=0.23  Score=43.12  Aligned_cols=32  Identities=31%  Similarity=0.562  Sum_probs=29.7

Q ss_pred             cEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|+|| |.-|...++.|.+.|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5999996 9999999999999999999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.02  E-value=0.19  Score=49.67  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4679999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	454
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	3e-25
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-16
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-21
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-19
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-16
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-15
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	5e-12
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-12
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	5e-12
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-11
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-11
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	5e-11
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	7e-11
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	4e-10
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-09
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-09
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-09
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-09
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	5e-09
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	5e-09
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-08
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	2e-08
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-08
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	5e-08
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-07
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	1e-07
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-07
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-07
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	4e-07
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	5e-07
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	5e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	6e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	7e-07
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	8e-07
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	1e-06
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	3e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	5e-06
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	5e-06
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	7e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	7e-06
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-06
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	8e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	8e-06
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	1e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	4e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	4e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	6e-05
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	1e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	3e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	4e-04
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	5e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	6e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	6e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	8e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	0.001
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	0.003
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.004
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	0.004
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	0.004

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  103 bits (257), Expect = 3e-25
 Identities = 61/270 (22%), Positives = 94/270 (34%), Gaps = 61/270 (22%)

Query: 13  KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNT------------- 57
           + + +IGAGPSGLV A+ L  E    +V + E+    GG W Y                 
Sbjct: 5   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 64

Query: 58  ---------DQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLK 108
                          S +Y  L+  +P E+MGY D  F         +FP    +  Y +
Sbjct: 65  TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSF----KPQTLQFPHRHTIQEYQR 120

Query: 109 DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK-EKKADKVVEEVFDAVV 167
            + Q   L   I+  T V  +   D            WVV  K  K    + +++FDAV 
Sbjct: 121 IYAQP--LLPFIKLATDVLDIEKKDG----------SWVVTYKGTKAGSPISKDIFDAVS 168

Query: 168 VATGHYSYPRLPSIKG-----------------MDKWKRKQMHSHIYRVPEP---FRNEV 207
           +  GHY  P    +                    D      ++ HI+ +P+P   F    
Sbjct: 169 ICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLA 228

Query: 208 VVVVGNSLSGQDISMELVEVAKEVHLSAKS 237
           + VV    S    +      +  + L +K 
Sbjct: 229 LHVVPFPTSQAQAAFLARVWSGRLKLPSKE 258

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 76.2 bits (186), Expect = 7e-16
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 293 PFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSG 352
                +  ++ D   V  +Y+H F     P+L+FVG+   ++ FP  ++QA ++A++ SG
Sbjct: 192 KLKSPETKLIDDGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSG 250

Query: 353 KRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQIG--FPHLEEWRK 409
           +  LPS ++ ++   E   S   A    H+     +  Y ++  D      P LEE   
Sbjct: 251 RLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFP 309

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 91.8 bits (227), Expect = 2e-21
 Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 19/184 (10%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V V+GAG SGL A   LR+ G  V V+E   DVGG W ++            Y   R   
Sbjct: 10  VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-----------RYPGARCDI 58

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC 134
                 Y+    VL++     R+    E+  Y+     +F LR  I F+T          
Sbjct: 59  ESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTT--------V 110

Query: 135 GELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHS 194
                      W V +      +    +  +  ++           I+G+     K+  +
Sbjct: 111 TAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVALKEKWA 170

Query: 195 HIYR 198
              R
Sbjct: 171 AGPR 174

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 82.0 bits (202), Expect = 1e-19
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 178 LPSIKGMDKWKR----KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHL 233
           +P+IKG+D++ +      +HS ++R PE F  E V+VVG + S  D+   L  VAK    
Sbjct: 1   IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY 60

Query: 234 SAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTA-DTILYC 285
            +              ++ +L   P+I       R +    G  ++  D ++YC
Sbjct: 61  QSLL-------GGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 76.8 bits (188), Expect = 2e-16
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 31/215 (14%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
           +Q     +IGAG +GL  A +L K G  V V +    +G + L          +  V  +
Sbjct: 2   SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPA 61

Query: 70  LRLTS----------------PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQR 113
             L+                    ++      +  K+   +    G +++   LK  C +
Sbjct: 62  HYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDK 121

Query: 114 FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY 173
           +G +  I   + V  V  +        ++ +++V++          +     ++VATG  
Sbjct: 122 YGAK--ILLRSEVSQVERIQ------NDEKVRFVLQVNST------QWQCKNLIVATGGL 167

Query: 174 SYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEV 207
           S P L +   G    ++  +     R       + 
Sbjct: 168 SMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDT 202

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 73.9 bits (180), Expect = 2e-15
 Identities = 34/195 (17%), Positives = 59/195 (30%), Gaps = 15/195 (7%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V VIG GPSGL+AA    +EG  V++L++ + +G +         +        +     
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAI------SGGGRCNVTNRLPLD 58

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC 134
                   +  F+                        +    R     N     V  L  
Sbjct: 59  EIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLT 118

Query: 135 GELIIGNDLIKWV-VKSKEKKADKVVEEV--------FDAVVVATGHYSYPRLPSIKGMD 185
               +G  +     V++ E +  +    +         + VV+A G  S P+  S     
Sbjct: 119 RLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGY 178

Query: 186 KWKRKQMHSHIYRVP 200
            W  K  H+      
Sbjct: 179 AWAEKAGHTITELFG 193

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 25/281 (8%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRL 72
           K+V ++GAG +GL AA  L   GH+V VLE +   GG  +     ++   ++++      
Sbjct: 31  KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG-RVRTYRNEEAGWYANLGPMRLP 89

Query: 73  TSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML 132
              R +  Y       K    +  F    +   Y         +R+ +    +   +   
Sbjct: 90  EKHRIVREYIR-----KFDLRLNEFSQENDNAWYFIK-----NIRKKVGEVKKDPGLLKY 139

Query: 133 DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQM 192
                  G    +   +S  K  +++       ++     YS       +G        M
Sbjct: 140 PVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDM 199

Query: 193 HSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN 252
              +      +         + +             +   +      +   + + I    
Sbjct: 200 IGDLLNEDSGYY-------VSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKV 252

Query: 253 NLHLHPQIDCLREDGRVTFV------DGCWVTADTILYCTG 287
           + +    I   + D +VT V      +   VTAD ++ CT 
Sbjct: 253 HFN-AQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 292

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 64.4 bits (156), Expect = 5e-12
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 8/179 (4%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASL 70
           +SK + ++GAG SG V  R+L ++GH+V +++Q   +GG   YD    +T V   VY   
Sbjct: 1   KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYGPH 59

Query: 71  RL-TSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
              T    +  Y        K  ++  +    +  +  + F     L  + +F ++    
Sbjct: 60  IFHTDNETVWNYV------NKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSP 113

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWK 188
                     G+  I      +E+    + +E+++A         +   PS       K
Sbjct: 114 DEARALIAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILK 172

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 5e-12
 Identities = 35/281 (12%), Positives = 89/281 (31%), Gaps = 8/281 (2%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EVHSSVYASLRL 72
           V V+G G +  + +  +   G +V+ +++N   GG+       ++              +
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68

Query: 73  TSPREIMGYTDFPFVLKKGRDVRRFPGHK-ELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
              R+        F++  G+ V+     +   +L  K     F  +    +         
Sbjct: 69  GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128

Query: 132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQ 191
           L    + +                D+   + F+ V                G D      
Sbjct: 129 LASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTG 188

Query: 192 MHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKH 251
               +YR  + + ++  +   N +     S+     +  ++       + +G +++ + +
Sbjct: 189 HALALYRT-DDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIY 247

Query: 252 NNLHL--HPQIDCLREDGRVTFV--DGCWVTADTILYCTGY 288
              ++   P  D + E+G+V  V  +G       ++    Y
Sbjct: 248 GGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSY 288

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 19/38 (50%), Positives = 22/38 (57%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          +K V VIGAG SGL AA +L+  G  V V E     GG
Sbjct: 1  AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 61.7 bits (148), Expect = 4e-11
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          NV V+G G SGL  A  LR  G   V+LE +  +GG
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 37

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (149), Expect = 5e-11
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 9  CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            ++  V +IG+G SGL AAR+L+  G  V +LE    VGG
Sbjct: 2  TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 7e-11
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          +V V+G G SG+ AA+ L   G  VVVLE    VGG
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG 36

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 26/280 (9%), Positives = 76/280 (27%), Gaps = 11/280 (3%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-----VHSSVYAS 69
           V V+G G +  + +  L  +G +V+ +++    GG+      +   E       S     
Sbjct: 8   VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
            +    R+        F++  G                        + +  +        
Sbjct: 68  SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANE 127

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKR 189
                  L+   +  +     +   + K  +      +    +            +  K 
Sbjct: 128 IEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE 187

Query: 190 KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVIS 249
              H+      + +  +        +     S+     +  ++       + +G +++ +
Sbjct: 188 FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSA 247

Query: 250 KHN-NLHLHPQIDCL---REDGRVTFV--DGCWVTADTIL 283
            +     L   ID +   ++ G+   V        A  ++
Sbjct: 248 IYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVI 287

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           +  ++G+G  G V A EL+K   +V+V+E+ + +GG
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 36/231 (15%), Positives = 72/231 (31%), Gaps = 40/231 (17%)

Query: 13  KNVCVIGAGPSGLVAAREL-RKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
            +V V+GAG +GL AA E+ +    +V ++EQ+   GG                      
Sbjct: 34  TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG----------------G 77

Query: 72  LTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
                 I+      F+ + G        +  +            + +++     V+    
Sbjct: 78  QLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTI--MSKLLARP-NVKLFNA 134

Query: 132 LDCGELIIGNDLIKWV------VKSKEKKADKVVEEVFDA--VVVATGHYSYPRLPSIKG 183
           +   +LI+  + +  V      V         +   V +A  VV + GH        +K 
Sbjct: 135 VAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK- 193

Query: 184 MDKWKRKQMHSHIYRVPEPFRN----EVVVVVGNSLSGQDIS---MELVEV 227
               + K +    +       +    E  +V         +    ME+ E+
Sbjct: 194 ----RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI 240

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 7/135 (5%)

Query: 12  SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN----HDVGGQWLYDPNTDQTEVHSSVY 67
           +  + V+G   SGL AA  LR  G  V V E++       G   +  P      +   V 
Sbjct: 4   TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE 63

Query: 68  ASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVE 127
                     +           +             +  +          E    +  + 
Sbjct: 64  LDSISVPSSSMEYVDALTG---ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLV 120

Query: 128 YVGMLDCGELIIGND 142
            +        +  +D
Sbjct: 121 GLSQDSETVQMRFSD 135

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 14/163 (8%)

Query: 12  SKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
           +  +CV+G+GP+G   A+ L K      V + E+     G   +    D  EV + +   
Sbjct: 1   TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVIN-- 58

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
              T          +  V + GRDV        +      +     L       +R    
Sbjct: 59  -TFTQTARSDRCAFYGNV-EVGRDV-------TVQELQDAYHAVV-LSYGAEDKSRPIDP 108

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172
            +    +L +  ++   VV          V+     V+  T  
Sbjct: 109 SVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMT 151

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.9 bits (131), Expect = 5e-09
 Identities = 25/194 (12%), Positives = 51/194 (26%), Gaps = 11/194 (5%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW-----LYDPNTDQTEVHSSVYAS 69
           V +IGAGPSGL+  + L K G   V+LE+             + +           +   
Sbjct: 5   VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVD------LLRE 58

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
             +       G       +      RR    +           +  +   +         
Sbjct: 59  AGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA 118

Query: 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKR 189
             +     +  +DL         ++  + +    D +    G +   R        +  R
Sbjct: 119 TTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGR 178

Query: 190 KQMHSHIYRVPEPF 203
             +      +  P 
Sbjct: 179 LFLAGDAAHIVPPT 192

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP-NTDQTEVHSSVYASLRLT 73
           V +IG GP G VAA +  + G +   +E+   +GG  L       +  +HSS        
Sbjct: 6   VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
           S            +       ++      L   ++   ++  +       T V+  G   
Sbjct: 66  SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKV-------TYVKGYGKFV 118

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMD 185
               I  + +       K              +++ATG     R P   G++
Sbjct: 119 SPSEISVDTIEGENTVVK-----------GKHIIIATGSDVKGRTPFTSGLN 159

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGG 49
          V V+GAG SG+ AA+ L + G   +++LE    +GG
Sbjct: 3  VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 38

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 176 PRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVH 232
           P+LP+  G+  +     H+  +   P  F  + V V+G   SG  +S ++ + A E+ 
Sbjct: 2   PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF 59

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (123), Expect = 3e-08
 Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 7/175 (4%)

Query: 11  QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASL 70
           +S +V +IG GP+G VAA +  + G     +E+   +GG  L         + ++ +   
Sbjct: 4   KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFH 63

Query: 71  RLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG 130
           ++ +  +  G  D    +K      +      +          F   ++  +     +  
Sbjct: 64  QMHTEAQKRGI-DVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFED 122

Query: 131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMD 185
                 +   + L   V +        ++      V    G     R P I G+ 
Sbjct: 123 E-TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVG-----RRPYIAGLG 171

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 6/117 (5%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           V +IG+G +GL AA   R  G +V++LE+    GG                         
Sbjct: 26  VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDK 85

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
            + ++  T        G      P   ++          +               G 
Sbjct: 86  KQIMIDDTMK------GGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGA 136

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 7/48 (14%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGH-------RVVVLEQNHDVGGQWLY 53
            + ++G+GPS   AA  L K           V +LE      G    
Sbjct: 3  YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS 50

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          V V+G+G +G  AA      G +V+++E+   +GG 
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 28/189 (14%), Positives = 55/189 (29%), Gaps = 24/189 (12%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---------------WLYDPNTDQ 59
           V VIGAG  GL  A  + +  H V+          +                     ++ 
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNP 62

Query: 60  TEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
            E + +      L S        +       G ++ R       W  +    ++   RE+
Sbjct: 63  QEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPREL 122

Query: 120 IRFNTRVEYV----GMLDCGELIIG--NDLIK---WVVKSKEKKADKVVEEVFDAVVVAT 170
             F            +L+  + +      L +        K +  ++V     D ++  T
Sbjct: 123 DMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCT 182

Query: 171 GHYSYPRLP 179
           G ++    P
Sbjct: 183 GVWAGVLQP 191

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN 56
          V V+G GP G  AA     EG +V ++E+   +GG  L    
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGC 50

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          V V+GAG +G  A+   +K G  V+++++    GG 
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 24/196 (12%)

Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT 73
           +   IG G +G   +  LR  G R +++++   +GG      +      H     +  L 
Sbjct: 44  DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP---HNACVPHHLFSDCAAELM 100

Query: 74  SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133
             R   G   FP + +K   ++                       +  F         + 
Sbjct: 101 LARTFSGQYWFPDMTEKVVGIKEV---------------------VDLFRAGRNGPHGIM 139

Query: 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMH 193
             +     +L   +    +   +  VE             +    P    + +  R    
Sbjct: 140 NFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAEL 199

Query: 194 SHIYRVPEPFRNEVVV 209
           + I  +    + EV+V
Sbjct: 200 AKILGLDLGPKGEVLV 215

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLY 53
           +V ++GAG SGL AA  + K     +V ++E +   GG    
Sbjct: 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS 65
             IG G  G+ +       G +  ++E    +GG  +      +  +  +
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHA 54

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 46/243 (18%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG------------------------- 49
           V V+GAG  G+ A  +L K+G + ++++                                
Sbjct: 6   VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLA 65

Query: 50  ----QWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWL 105
               +  Y+   +      +    L      E     +     K+           E+  
Sbjct: 66  LRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINK 125

Query: 106 YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-----VKSKEKKADKVV- 159
                        +   N+ V +          +       V     V+  +   D V  
Sbjct: 126 RWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKI 185

Query: 160 -----EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNS 214
                    D ++V+ G ++         + K        H      P  + VV+  G S
Sbjct: 186 ETANGSYTADKLIVSMGAWNSKL------LSKLNLDIPDEHFIIDLHPEHSNVVIAAGFS 239

Query: 215 LSG 217
             G
Sbjct: 240 GHG 242

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.1 bits (116), Expect = 5e-07
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 15  VCVIGAGPSGLVAARELRK------EGHRVVVLEQN-----HDVGGQWLY-------DPN 56
           V ++GAGP+GL AA  L++      +  RV ++E+      H + G  L         P+
Sbjct: 35  VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94

Query: 57  TDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGL 116
             +     +   +               P +     +       +   L      Q   L
Sbjct: 95  WKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL 154

Query: 117 REMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV--VEEVFDAVVVATGHYS 174
              +        +   + G +         + K    K      +E      + A G + 
Sbjct: 155 GVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 214

Query: 175 YPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVV 210
           +      K  D     +       +P+      +++
Sbjct: 215 HLAKQLYKKFDLRANCEPQGGFQSIPKLTFPGGLLI 250

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 27/276 (9%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
           + VIG G  G+ AAR   +   +V ++E++  +GG          T V+        + +
Sbjct: 4   LIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGG----------TCVNVGCVPKKIMFN 52

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC 134
              +    +                                 R+ +  +    Y G    
Sbjct: 53  AASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 112

Query: 135 GELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRK-QMH 193
                          +K+             +++A G+    R P  + +   K   + +
Sbjct: 113 LSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETN 172

Query: 194 SHIYRVPEPFRNEVVVV--VGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKH 251
           ++   V E  R  V  +  VG+    +           +++   + LN  E +++ I   
Sbjct: 173 NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDI--- 229

Query: 252 NNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTG 287
                + Q+        V    G  + AD +     
Sbjct: 230 ---FYNVQLT------PVAINAGR-LLADRLFLKKT 255

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 11/37 (29%), Positives = 12/37 (32%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
            VIG G  G   A  L KE     + E     G   
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTT 43

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 47.5 bits (112), Expect = 8e-07
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 7/112 (6%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
           A      V+GAGP G VAA    + G +V ++E+ + +GG  L         + S+ +  
Sbjct: 1   AIETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNVGCIPSKALISASHRY 59

Query: 70  LRLTSPREIMGYTDFPFVLKKGRD------VRRFPGHKELWLYLKDFCQRFG 115
            +     E+    +   +            V++  G  E  L         G
Sbjct: 60  EQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKG 111

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
           K V V+G+G  GL +A  L ++G+ V +L ++     
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH 63
          A S  + ++GAGP+ +  A  L + G+  + + +  +  G             +
Sbjct: 2  AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPY 55

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQW 51
          ++ + GAG  GL  A  L + G  +V +LE + ++    
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLG 41

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 39/132 (29%)

Query: 10  AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS 69
            Q KN+ V+GAGP+GL  A      GH+V + + + ++GGQ+                  
Sbjct: 41  VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNI---------------- 84

Query: 70  LRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129
                                 + +       E   Y +   +  G+   ++ N  V   
Sbjct: 85  ---------------------AKQIPGKEEFYETLRYYRRMIEVTGVT--LKLNHTVTAD 121

Query: 130 GMLDCGELIIGN 141
            +    E I+ +
Sbjct: 122 QLQAFDETILAS 133

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 13/72 (18%), Positives = 21/72 (29%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
            VIG+G  G VAA  L + G    ++E                           L   +
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKT 69

Query: 75 PREIMGYTDFPF 86
           + +  +  F  
Sbjct: 70 DQPVSNFMGFGI 81

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
          V VIGAGP G VAA +  + G +  ++E+     G+ 
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 24/168 (14%), Positives = 47/168 (27%), Gaps = 14/168 (8%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY---DPNTDQTEVHSSVYAS 69
             + ++G+GP+G  AA    +   + V++      G        +         +     
Sbjct: 6   SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLM 65

Query: 70  LRLTSPREIMG-YTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG---LREMIRFNTR 125
            R+            F  + K     R F  + +   Y  D          R        
Sbjct: 66  ERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAI 125

Query: 126 VEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY 173
            E    L+ G + + + +     ++        +  VF A  V    Y
Sbjct: 126 FEGQLELENGYIKVQSGIHGNATQTS-------IPGVFAAGDVMDHIY 166

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53
           + +IG GP G VAA    + G   V++E    +GG  L 
Sbjct: 7  TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTCLN 45

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
          V ++G+GP G   AREL   G++V + +      G  +     +  E   ++   + +  
Sbjct: 7  VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQ 66

Query: 75 P 75
           
Sbjct: 67 G 67

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR--L 72
            VIG G    V+A  L + G + ++LE      GQ    P  D       +    R   
Sbjct: 5  AVVIGTGYGAAVSALRLGEAGVQTLMLEM-----GQLWNQPGPDGNIFCGMLNPDKRSSW 59

Query: 73 TSPREIMGYTDFPFVLKKGRDVRRFPG 99
             R       F ++    R++  + G
Sbjct: 60 FKNRTEAPLGSFLWLDVVNRNIDPYAG 86

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          + +IG G  GL AA+E  K   +V+VL+       
Sbjct: 6  LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL 40

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 44/238 (18%)

Query: 15  VCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ--------WLYDPNTDQTEVHSS 65
           + +IGAG  G   A EL   G + + VL+Q                ++  N  +T    +
Sbjct: 4   IVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFA 63

Query: 66  VYASLRLTS-------PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
            Y   +L S           +G  +      +  D++R  G+   W            +E
Sbjct: 64  KYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQE 123

Query: 119 MIRFNTRVEYVG---MLDCGELIIGNDLIKWV---------------VKSKEKKADKVVE 160
           +         +G   +   G       +   +               V   E+   +V  
Sbjct: 124 LYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTG 183

Query: 161 EV-------FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVV 211
                     D VV   G +   ++ ++ GM           +    E     V   V
Sbjct: 184 VQTADGVIPADIVVSCAGFWG-AKIGAMIGM--AVPPDGGPLLGESKELDGFYVAEAV 238

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH 63
            VIG G  GL +AR   + G R  V+E  H +GG  +      +  + 
Sbjct: 6  YLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVMW 53

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 8/165 (4%)

Query: 14  NVCVIGAGPSGLVAARELRKEGHRVVVLE-------QNHDVGGQWLYDPNTDQTEVHSSV 66
           +V ++G+GP+G  AA    ++G R  ++         +      ++  P T+  ++  ++
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 67  YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV 126
              +       I   +    +                 +            ++   N   
Sbjct: 63  KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122

Query: 127 EYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171
             V     GE II +   +  VK      D         ++    
Sbjct: 123 GAVERNRMGE-IIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGE 166

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 14 NVCVIGAGPSGLVAAR---ELRKEGHRVVVLEQNHDVGGQWLY 53
           + ++G GP+G  AA        E  +V V++ +  +GG  + 
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVL 44

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            VIG G +GL AA   +++G   +VL        
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
          SK   V+G G  G   A  L  +G  V+  + +   
Sbjct: 1  SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQR 36

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 5/37 (13%)

Query: 15 VCVIGAGPSGLVAAREL-----RKEGHRVVVLEQNHD 46
          V ++GAGP+GL+AAR L     +K   +V ++++   
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
            VIGAG +G+ AA ++ + G    +L +      
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP 55
          A    V V+GAG + +    ELR+ G++ ++     +    +   P
Sbjct: 1  ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPP 46

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 15  VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS 74
             ++GAGP G++AA  L + G +V++LE+    GG              ++     +   
Sbjct: 5   YIIVGAGPGGIIAADRLSEAGKKVLLLER----GGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 75  PREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFN 123
           P                +D+  F G         +    +   +    +
Sbjct: 61  PGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSS 109

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 21/188 (11%), Positives = 60/188 (31%), Gaps = 10/188 (5%)

Query: 15  VCVIGAGPSGLVAA----RELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASL 70
           + +IG G SG  AA       +  G +V ++E+        +    +           S 
Sbjct: 24  ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSE 83

Query: 71  RLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG 130
           R  +  + + Y     +     D+     +           +++GL          +   
Sbjct: 84  RQNTLEDYVRYVTLDMMGLAREDLVAD--YARHVDGTVHLFEKWGL----PIWKTPDGKY 137

Query: 131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRK 190
           + +    I+ +      + ++  K     E +++ V +           ++ G   +  +
Sbjct: 138 VREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVR 197

Query: 191 QMHSHIYR 198
           +   ++++
Sbjct: 198 EPKFYVFK 205

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN 56
            +C++G+GP+   AA    +   + ++ E              
Sbjct: 6  TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLT 49

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 8/52 (15%), Positives = 17/52 (32%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH 63
          +K+V ++G+G         L   G +V V  +  +   +             
Sbjct: 2  TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISL 53

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVH 63
          + V V+G G  G  AA+ ++       V ++E N D    +L +         
Sbjct: 3  RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKL 55

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN 56
          V ++GAG SG   A  L ++G RV +L Q+ D        P 
Sbjct: 5  VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPK 46

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
          V +IG+G +GL  A  L  +  +V+VL +     G
Sbjct: 10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG 43

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLE 42
          + NV ++G G +G+  A  LR  G    +  
Sbjct: 3  NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL 33

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
          + VIGAG  GL AA        + V +     V G   + 
Sbjct: 6  LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFS 45

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 12/46 (26%), Positives = 16/46 (34%)

Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN 56
          Q KNV +IG G +GL         G    V++      G       
Sbjct: 4  QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEA 49

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 13  KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVY 67
            +V ++GAGPSG  AAR L + G+ V + +    +GG              S   
Sbjct: 50  DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHR 104

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
          + VIGAG  GL A         + V +       G 
Sbjct: 6  LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGP 41

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
          K   VIG G  G    +EL + GH V+ ++ N +
Sbjct: 1  KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE 34

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 1  MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLE 42
          +++D      ++ +  + G G +GL  A  L +     V+V+E
Sbjct: 6  LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIE 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	454
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	100.0
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.91
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.77
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.72
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.72
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.7
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.68
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.65
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.64
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.64
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.64
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.63
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.62
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.61
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.57
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.57
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.56
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.53
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.53
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.52
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.5
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.49
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.49
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.47
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.47
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.47
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.47
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.44
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.43
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.42
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.4
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.35
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.35
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.34
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.33
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.33
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.31
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.31
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.3
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.3
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.29
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.29
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.29
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.28
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.26
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.25
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.24
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.24
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.24
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.24
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.24
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.24
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.23
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.23
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.23
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.22
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.22
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.22
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.21
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.2
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.2
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.18
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.16
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.15
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.15
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.14
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.13
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.13
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.11
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.11
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.11
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.1
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.1
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.08
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.08
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.05
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.04
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.04
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.04
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.03
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.0
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.99
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.99
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.98
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.96
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.9
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.9
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.89
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.87
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.84
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.78
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.76
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.74
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.72
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.72
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.71
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.67
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.67
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.67
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.59
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.55
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.55
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.53
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.51
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.46
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.46
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.43
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.43
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.35
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.33
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.31
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.29
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.25
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.24
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.21
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.18
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.15
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.15
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.15
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.1
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.08
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.05
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.03
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.02
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.99
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.96
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.86
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.84
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.83
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.82
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.79
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.77
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.74
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.69
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.63
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.62
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.54
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.51
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.47
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.44
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.44
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.41
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.39
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.35
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.33
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.31
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.3
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.12
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.09
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.07
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.0
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.74
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.72
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.68
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.65
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.61
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.6
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.41
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.36
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.33
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.29
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.25
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	96.21
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.18
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.15
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.15
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.12
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.11
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.08
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.0
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.92
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.92
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.91
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.91
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.65
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.65
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.55
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.46
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.38
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.24
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.17
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.1
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.99
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.98
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.97
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.8
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.78
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.78
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.67
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.63
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	94.52
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.52
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.49
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.36
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.28
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.26
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	94.2
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.19
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.18
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.16
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.15
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.13
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.85
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.81
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.79
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.78
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.69
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.68
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.56
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.51
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.35
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.32
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.17
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.16
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.14
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.08
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.05
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.01
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.96
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.92
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.89
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	92.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.79
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.69
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	92.69
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.66
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.57
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.56
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.48
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.46
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.45
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.41
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.38
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.34
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.31
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.27
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.17
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	92.16
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.13
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.12
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.07
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.03
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.95
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.87
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	91.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.55
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.54
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.54
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.34
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.3
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.29
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.28
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.06
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.0
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.83
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.49
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.48
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.48
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.21
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.09
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.01
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	89.89
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.87
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.86
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.83
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.68
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	89.55
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.52
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.29
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.29
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.15
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.07
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.98
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.88
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.75
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.49
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.44
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.31
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.07
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.04
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.03
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	87.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.88
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	87.87
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.82
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.73
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.42
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.18
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	87.11
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	87.08
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.65
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.64
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.58
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	86.57
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.44
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.41
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.39
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	86.34
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.29
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	86.24
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	86.23
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.16
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.13
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.08
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.05
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	86.01
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.79
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.79
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.76
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.66
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	85.44
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	85.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.25
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	85.12
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.12
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	85.09
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.0
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.93
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.89
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.8
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.76
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	84.45
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	84.3
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.29
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	84.25
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.23
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	84.06
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.89
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	83.8
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.78
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	83.74
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	83.71
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	83.58
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.55
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.49
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	83.28
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.24
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.17
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.15
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	83.1
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	82.94
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	82.69
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	82.62
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	82.62
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	82.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.52
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.37
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	82.37
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.35
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.3
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	82.24
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	81.95
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	81.84
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.81
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.79
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.72
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.57
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.42
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.24
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.24
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	81.05
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.03
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.98
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.96
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	80.94
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	80.93
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.79
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.69
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.65
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.63
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.57
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	80.57
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	80.31
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.2
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	80.14
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	80.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	80.09
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.06

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=1.7e-34  Score=276.82  Aligned_cols=269  Identities=28%  Similarity=0.482  Sum_probs=207.8

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCC----------------------Cccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQT----------------------EVHS   64 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~----------------------~~~~   64 (454)
                      |+..++|+|||||+|||+||+.|++.+  .+|+||||++.+||+|.+....+..                      ...+
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   80 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   80 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccc
Confidence            344589999999999999999998876  5999999999999999886533210                      2356


Q ss_pred             cccccceecCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCC
Q 044575           65 SVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLI  144 (454)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~  144 (454)
                      .+|..+..+.+..++.+++++++.    ..+.|+++.++.+|+..+++.++.  +|+++++|++|+..++          
T Consensus        81 ~~y~~l~~~~~~~~~~~~~~~~~~----~~~~f~~~~~~~~yl~~~~~~~~~--~I~~~t~V~~v~~~~~----------  144 (335)
T d2gv8a1          81 PLYRDLQTNTPIELMGYCDQSFKP----QTLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKKDG----------  144 (335)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCT----TCCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEETT----------
T ss_pred             ccchhhhcCCcHhhhhhhhhcCCc----ccccCCchHHHHHHHHHHHHHhhh--cccCceEEEEEEecCC----------
Confidence            789999999999999999999988    888999999999999999987654  5999999999998754          


Q ss_pred             cEEEEEeecCCC-eEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHH
Q 044575          145 KWVVKSKEKKAD-KVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISME  223 (454)
Q Consensus       145 ~~~v~~~~~~~~-~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~  223 (454)
                      +|+|++++...+ +.....||+||+|||+++.|++|.+++...           .....+++++                
T Consensus       145 ~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~-----------p~~~~f~~~~----------------  197 (335)
T d2gv8a1         145 SWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPF-----------PSLAKLKSPE----------------  197 (335)
T ss_dssp             EEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBCCCCCC-----------HHHHSCCSTT----------------
T ss_pred             EEEEEEEecCCCCeEEEEEeeEEEEcccccccceecccccCCC-----------CcchhcccCc----------------
Confidence            899999886543 445678999999999999999986643210           0000011110                


Q ss_pred             HhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCCceee
Q 044575          224 LVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVV  303 (454)
Q Consensus       224 l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v  303 (454)
                                                                                                 ..+..
T Consensus       198 ---------------------------------------------------------------------------~~~~~  202 (335)
T d2gv8a1         198 ---------------------------------------------------------------------------TKLID  202 (335)
T ss_dssp             ---------------------------------------------------------------------------TCCCS
T ss_pred             ---------------------------------------------------------------------------cceec
Confidence                                                                                       11111


Q ss_pred             CCCCcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCCCCCcc
Q 044575          304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNT  383 (454)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (454)
                      +.....++|+|+|... .|+++|+|.+..+.+++.++.||.++++.++|+..||+.++|.++..+.....+.  .. ...
T Consensus       203 ~~~~~~~ly~~~~~~~-~p~l~f~G~~~~v~~~~~~e~Qa~~~a~~~~g~~~Lps~~~m~~~~~~~~~~~~~--~~-~~~  278 (335)
T d2gv8a1         203 DGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSG--AN-NMY  278 (335)
T ss_dssp             SSSSCCSEETTTEETT-CTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHTT--CG-GGT
T ss_pred             cccceeeeecccccCC-CCceEEeeeEEEEecCCchHHHHHHHHHHHcCCccCCCcchhhhhhHHHHHhhcc--cC-ccc
Confidence            2334457999999974 6999999999988889999999999999999999999999999987765543322  22 222


Q ss_pred             ccc---ccHHHHHHHHHHc
Q 044575          384 HDI---ANFEYCDRYADQI  399 (454)
Q Consensus       384 ~~~---~~~~y~~~l~~~~  399 (454)
                      |.+   .+..|+++|...+
T Consensus       279 ~~~~~~~~~~y~~~L~~~~  297 (335)
T d2gv8a1         279 HSLDYPKDATYINKLHDWC  297 (335)
T ss_dssp             TBCTTTHHHHHHHHHHHHH
T ss_pred             eecCCchHHHHHHHHHHHH
Confidence            333   3578999987744

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.91  E-value=2.1e-25  Score=208.15  Aligned_cols=153  Identities=27%  Similarity=0.392  Sum_probs=128.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ++..||||||||++||++|++|++.|.+|+|||+++.+||+|.+.           .|+....+.+...+.++..+.+..
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n-----------~ypg~~~d~~~~~~~~s~~~~~~~   73 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-----------RYPGARCDIESIEYCYSFSEEVLQ   73 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----------CCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccC-----------CCCCceeccccccccccccccccC
Confidence            356899999999999999999999999999999999999999864           356666666666666665543321


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                      .......|++++++.+|++++++++++.++|+|+++|+++...+..+        .|+|++.++.     ++++|+||+|
T Consensus        74 ~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~--------~W~V~~~~~~-----~~~~~~~i~a  140 (298)
T d1w4xa1          74 EWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN--------TWTVDTNHGD-----RIRARYLIMA  140 (298)
T ss_dssp             HCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT--------EEEEEETTCC-----EEEEEEEEEC
T ss_pred             CCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCC--------ceeecccccc-----ccccceEEEe
Confidence            12256678999999999999999999999999999999999876543        8999998776     7899999999


Q ss_pred             cCCCCCCCCCCCCCcCC
Q 044575          170 TGHYSYPRLPSIKGMDK  186 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~  186 (454)
                      ||..+.|.+|.++|++.
T Consensus       141 tG~ls~~~~p~~~~~~i  157 (298)
T d1w4xa1         141 SGQLSDALTGALFKIDI  157 (298)
T ss_dssp             CCSCCCCTTHHHHTSEE
T ss_pred             ecccccccCCccccccc
Confidence            99999999998888874

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.78  E-value=1.4e-22  Score=182.79  Aligned_cols=170  Identities=15%  Similarity=0.120  Sum_probs=106.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ....++|+|||||||||+||..|++.|++|+|||+++.+||.|......+.                             
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~-----------------------------   96 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPG-----------------------------   96 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTT-----------------------------
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccce-----------------------------
Confidence            345689999999999999999999999999999999999999985422110                             


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                              +........+......+....  . ....   +...            ...++.....     ++.||+||+
T Consensus        97 --------~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~~~~------------~~~~~~~~~~-----~~~~d~vvi  145 (233)
T d1djqa3          97 --------LGEWSYHRDYRETQITKLLKK--N-KESQ---LALG------------QKPMTADDVL-----QYGADKVII  145 (233)
T ss_dssp             --------CGGGGHHHHHHHHHHHHHHTT--C-TTCE---EECS------------CCCCCHHHHH-----TSCCSEEEE
T ss_pred             --------eecccccchhHHHHHHHHhhc--c-eeee---eecc------------cccccchhhh-----hhccceeee
Confidence                    011122233333333333221  0 0111   1101            1111111111     457999999


Q ss_pred             ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |||  +.+..|.+++.........+...........+++|+|||+|.+|+|+|.+|++.+++|++++|++.+
T Consensus       146 AtG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         146 ATG--ASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             CCC--EECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             ccC--CCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            999  6666654443322111111111111112235689999999999999999999999999999998876

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.6e-20  Score=157.73  Aligned_cols=134  Identities=22%  Similarity=0.386  Sum_probs=104.2

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ...++|+|||||||||+||..|+++|++|+|||+.+.+||.+++..                                  
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~----------------------------------   86 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK----------------------------------   86 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT----------------------------------
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE----------------------------------
Confidence            4468999999999999999999999999999999999999877421                                  


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         ..+.+....++.+|+.+.+++++++  +++|+.|+.   .  .                        ...||+||+|
T Consensus        87 ---~~p~~~~~~~~~~~~~~~~~~~gV~--i~l~~~Vt~---~--~------------------------~~~~d~vilA  132 (179)
T d1ps9a3          87 ---QIPGKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA---D--Q------------------------LQAFDETILA  132 (179)
T ss_dssp             ---TSTTCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS---S--S------------------------SCCSSEEEEC
T ss_pred             ---eCcccchHHHHHHHHHHhhhcCCeE--EEeCCEEcc---c--c------------------------cccceeEEEe
Confidence               1223344578899999999999987  888887631   0  0                        2358999999


Q ss_pred             cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHH-HHHHhhhcCeE
Q 044575          170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDI-SMELVEVAKEV  231 (454)
Q Consensus       170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~-A~~l~~~~~~V  231 (454)
                      ||  +.|+.+.+||.+                  .+++|+|||+|.+++|+ +......|.+|
T Consensus       133 tG--~~~~~~~~pg~~------------------~g~~v~vigggd~a~~~~~~~Av~~G~~v  175 (179)
T d1ps9a3         133 SG--IPNRALAQPLID------------------SGKTVHLIGGCDVAMELDARRAIAQGTRL  175 (179)
T ss_dssp             CC--EECCTTHHHHHT------------------TTCCEEECGGGTCCSSCCHHHHHHHHHHH
T ss_pred             ec--CCCcccccchhc------------------cCCEEEEECCcHhhhhccchhhhhccCEE
Confidence            99  788877776653                  36899999999999997 43444444443

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=5.4e-20  Score=163.76  Aligned_cols=183  Identities=13%  Similarity=0.163  Sum_probs=108.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-c-ccccccceecCCccccccCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-H-SSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      +|||+||||||||++||.++++.|.+|+|||++ .+||+|.+.+|.|++.+ . +..+..+....+.......       
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~-------   73 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT-------   73 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE-------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCC-------
Confidence            589999999999999999999999999999985 69999999998877511 1 1111111111110000000       


Q ss_pred             CCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575           90 KGRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV  158 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (454)
                           ..-....++.++....           .++.++.  +........   .            ...+.. ++     
T Consensus        74 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~--v~~~~~~~~---~------------~~~~~~-~~-----  125 (217)
T d1gesa1          74 -----INKFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKGFARFV---D------------AKTLEV-NG-----  125 (217)
T ss_dssp             -----EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCCEEE---E------------TTEEEE-TT-----
T ss_pred             -----cccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEE--EEeeecccc---e------------eeeecC-CC-----
Confidence                 0001223443333322           2222332  222211110   0            111111 11     


Q ss_pred             EEEEeCEEEEccCCCCCCCCCCCCCcCCcc----ceeEEeecC---CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeE
Q 044575          159 VEEVFDAVVVATGHYSYPRLPSIKGMDKWK----RKQMHSHIY---RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV  231 (454)
Q Consensus       159 ~~~~~d~vViAtG~~~~p~~p~i~G~~~~~----~~~~~~~~~---~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V  231 (454)
                      ..+.++++++|||  +.|.+|.+|+.+...    +.......+   ........++|.|||+|.+|+|+|..+++.|.+|
T Consensus       126 ~~~~~~~~iiatG--~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v  203 (217)
T d1gesa1         126 ETITADHILIATG--GRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRL  203 (217)
T ss_dssp             EEEEEEEEEECCC--EEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred             ceeeeeeeeeecC--ccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHH
Confidence            2678999999999  899999888765421    111111111   1112234568999999999999999999999887


Q ss_pred             E
Q 044575          232 H  232 (454)
Q Consensus       232 ~  232 (454)
                      +
T Consensus       204 ~  204 (217)
T d1gesa1         204 S  204 (217)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.72  E-value=1.1e-18  Score=155.43  Aligned_cols=50  Identities=28%  Similarity=0.480  Sum_probs=45.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      +.|||+||||||||++||..+++.|.+|+|||+++.+||.|.+.+|.+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~   51 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSK   51 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhh
Confidence            46999999999999999999999999999999999999999988776553

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.70  E-value=2.7e-17  Score=150.37  Aligned_cols=51  Identities=20%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      ++.||++|||||++|+.+|..+++.|.+|+++|+.+.+||+|.+.+|.|++
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k   90 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHH   90 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchH
Confidence            357899999999999999999999999999999999999999999988765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=1.5e-17  Score=129.68  Aligned_cols=101  Identities=29%  Similarity=0.487  Sum_probs=85.0

Q ss_pred             CCCCCCcCCc----cceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCC
Q 044575          178 LPSIKGMDKW----KRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNN  253 (454)
Q Consensus       178 ~p~i~G~~~~----~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~  253 (454)
                      +|++||++.|    .|.++|++.|+.+..|+||+|+|||+|.||+|+|.+|+..+++|+++.|++....       ...+
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~-------~~~~   73 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI-------QNES   73 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC-------BCSS
T ss_pred             CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcccc-------cccc
Confidence            4788898776    4999999999999999999999999999999999999999999888887665321       1224


Q ss_pred             eEEcCceeEEecCC-cEEEeCCCEEe-eceEEEc
Q 044575          254 LHLHPQIDCLREDG-RVTFVDGCWVT-ADTILYC  285 (454)
Q Consensus       254 i~~~~~v~~v~~~~-~v~~~dG~~i~-~D~vI~a  285 (454)
                      +...+.|.++..++ .+.|.||++++ +|.||+|
T Consensus        74 ~~~~~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          74 LQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ceecCCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            56667888887554 69999999987 8999998

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=3.7e-19  Score=162.74  Aligned_cols=47  Identities=26%  Similarity=0.480  Sum_probs=44.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      |||+||||||||+.||..+++.|.+|+|||+. .+||+|.+.+|.|+|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n~gciPsK   48 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVPKK   48 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEeeCCcchH
Confidence            89999999999999999999999999999985 699999999999987

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.64  E-value=3.7e-16  Score=140.07  Aligned_cols=66  Identities=23%  Similarity=0.436  Sum_probs=60.7

Q ss_pred             CCCCCCCCCcCCccceeEEeecCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          175 YPRLPSIKGMDKWKRKQMHSHIYR-VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       175 ~p~~p~i~G~~~~~~~~~~~~~~~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|++|++||++.|.|.++||.+|. .+..++||+|+|||+|.||+|+|.+++..+++++++.|++.+
T Consensus         1 vP~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2           1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccce
Confidence            489999999999999999999995 667899999999999999999999999999999998887654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.64  E-value=4.9e-16  Score=133.86  Aligned_cols=136  Identities=18%  Similarity=0.153  Sum_probs=100.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-----chhh--------------h-ccCCCeEEcCceeEEec
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-----LSKV--------------I-SKHNNLHLHPQIDCLRE  265 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-----~~~~--------------l-~~~~~i~~~~~v~~v~~  265 (454)
                      ++|+|||||++|+|+|..|.+.+.+|+++.+++.....     +...              . ....+++.+..++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            46999999999999999999999887777665543211     1110              0 11235677888888875


Q ss_pred             CC-cEEEeCCCEEeeceEEEccCcccCCcCCC----------CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-
Q 044575          266 DG-RVTFVDGCWVTADTILYCTGYSYSFPFLD----------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-  333 (454)
Q Consensus       266 ~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~----------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-  333 (454)
                      +. .+.++||+++++|.+|+|||..|+..+++          .++.|.+|++.+          ++.|++|++||+... 
T Consensus        84 ~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~----------ts~~~IyA~GD~a~~~  153 (183)
T d1d7ya1          84 QAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGR----------TTCPDVYALGDVTRQR  153 (183)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCB----------CSSTTEEECGGGEEEE
T ss_pred             ccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEecccee----------ccccccchhhhhhccc
Confidence            54 68889999999999999999999865533          234577777655          457999999998642 


Q ss_pred             ----------cchhHHHHHHHHHHHHHc
Q 044575          334 ----------IGFPFFESQAKWIAQLLS  351 (454)
Q Consensus       334 ----------~~~~~a~~qa~~~a~~i~  351 (454)
                                ..+..|..||+.+|++|.
T Consensus       154 ~~~~g~~~~~~~~~~A~~qg~~aa~nil  181 (183)
T d1d7ya1         154 NPLSGRFERIETWSNAQNQGIAVARHLV  181 (183)
T ss_dssp             CTTTCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred             eeeCCceechhHHHHHHHHHHHHHHHHc
Confidence                      134679999999999884

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=4.5e-16  Score=139.52  Aligned_cols=47  Identities=23%  Similarity=0.441  Sum_probs=42.0

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC---CcEEEEeeCCCCCcccccCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG---HRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g---~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      .+|+||||||||++||.++++.+   .+|++||+ ..+||.|.+.+|+|+|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~GciPsK   51 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLDDCVPSK   51 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHTSHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecccccccE
Confidence            47999999999999999988765   57999998 5799999999998876

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.63  E-value=2.5e-17  Score=146.72  Aligned_cols=48  Identities=31%  Similarity=0.513  Sum_probs=43.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      .+||+||||||||++||.++++.|.+|+|||+. .+||+|.+..|.+++
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~~~~~~~~   50 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSK   50 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceecccccccc
Confidence            489999999999999999999999999999985 689999988876654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.62  E-value=1.2e-15  Score=129.17  Aligned_cols=135  Identities=22%  Similarity=0.234  Sum_probs=99.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC---ccchhhh---------c---------cCCCeEEcCceeEEec
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS---EGLSKVI---------S---------KHNNLHLHPQIDCLRE  265 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~---~~~~~~l---------~---------~~~~i~~~~~v~~v~~  265 (454)
                      ||+|||+|++|+|+|..|++ +.+||++++.+...   +.+.+.+         .         ...+++.+..++.++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence            79999999999999999976 56999999876541   1111111         1         1124667788999877


Q ss_pred             CCcEEEeCCCEEeeceEEEccCcccCCcCC-----CCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-----c
Q 044575          266 DGRVTFVDGCWVTADTILYCTGYSYSFPFL-----DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-----G  335 (454)
Q Consensus       266 ~~~v~~~dG~~i~~D~vI~atG~~~~~~~l-----~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-----~  335 (454)
                      +..+++.+++++++|.+|+|+|..|+ +++     .....+.+|++.+          ++.|++|++||+....     .
T Consensus        81 ~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~~~i~v~~~~~----------t~~~~i~aiGD~~~~~~~~~~~  149 (167)
T d1xhca1          81 GRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTGRGILIDDNFR----------TSAKDVYAIGDCAEYSGIIAGT  149 (167)
T ss_dssp             TTTEEEESSCEEECSEEEECCCEECC-HHHHHTTCCBSSSEECCTTSB----------CSSTTEEECGGGEEBTTBCCCS
T ss_pred             ccccccccccccccceeEEEEEecCC-chhhhcCceeCCceeeccccE----------ecCCCeEEeeecccCCCeEECh
Confidence            66788899999999999999999875 332     2223455565554          4569999999986432     3


Q ss_pred             hhHHHHHHHHHHHHHcCC
Q 044575          336 FPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       336 ~~~a~~qa~~~a~~i~g~  353 (454)
                      .+.|..||+.+|++|+|+
T Consensus       150 ~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         150 AKAAMEQARVLADILKGE  167 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            468999999999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=1.4e-15  Score=131.11  Aligned_cols=140  Identities=24%  Similarity=0.276  Sum_probs=99.5

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-----cchhhhcc-------------------CCCeEEcCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-----GLSKVISK-------------------HNNLHLHPQ  259 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-----~~~~~l~~-------------------~~~i~~~~~  259 (454)
                      ++++|+|||||++|+|+|.+|++.+.+|+++.+.+....     .+...+..                   ...+.....
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            468999999999999999999999998888766554311     11110000                   011233444


Q ss_pred             eeEEecCC-cEEEeCCCEEeeceEEEccCcccCCcCC--------CCCCceeeCCCCcccccCcccCCCCCCCceEeccc
Q 044575          260 IDCLREDG-RVTFVDGCWVTADTILYCTGYSYSFPFL--------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIP  330 (454)
Q Consensus       260 v~~v~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l--------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~  330 (454)
                      +..+..+. .+.+.++.++++|.+++++|.+|+.|.+        ..++.+.||++.+          ++.|++|++||+
T Consensus        82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~----------ts~~~vya~GD~  151 (185)
T d1q1ra1          82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQ----------TSDPLIMAVGDC  151 (185)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSB----------CSSTTEEECGGG
T ss_pred             eeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccc----------cchhhhhcchhh
Confidence            55554433 5788889999999999999998765542        2345677777655          457999999998


Q ss_pred             ccc-----------cchhHHHHHHHHHHHHHcCC
Q 044575          331 RKL-----------IGFPFFESQAKWIAQLLSGK  353 (454)
Q Consensus       331 ~~~-----------~~~~~a~~qa~~~a~~i~g~  353 (454)
                      ...           ..++.|..||+.+|++|.|+
T Consensus       152 ~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         152 ARFHSQLYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             EEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             hccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            643           23568999999999999996

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.61  E-value=1.4e-15  Score=138.16  Aligned_cols=152  Identities=22%  Similarity=0.357  Sum_probs=90.4

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc--------cccCCCCC--CCCc---cccccccceecCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTD--QTEV---HSSVYASLRLTSP   75 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~--------w~~~~~~~--~~~~---~~~~~~~~~~~~~   75 (454)
                      |.+.+||+||||||||+.||..|++.|.+|+||||++.+|+.        |+..+...  ....   .......+....+
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~   80 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence            456689999999999999999999999999999999998743        32211100  0000   0000000000000


Q ss_pred             cccccc---CCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575           76 REIMGY---TDFPFVLKKGRDVRRFP--GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS  150 (454)
Q Consensus        76 ~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~  150 (454)
                      .....+   .+.++....  ....|+  ...++.+.+.+.+++.+++  ++++++|+++...++..     .. .+.+..
T Consensus        81 ~~~~~~~~~~g~~~~~~~--~~~~~~~~~a~~i~~~L~~~~~~~gV~--i~~~~~V~~i~~~~~~~-----~v-~~~~~~  150 (253)
T d2gqfa1          81 WDFISLVAEQGITYHEKE--LGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDE-----KV-RFVLQV  150 (253)
T ss_dssp             HHHHHHHHHTTCCEEECS--TTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCS-----SC-CEEEEE
T ss_pred             cchhhhhhhcCcceeeec--CCccccccchhHHHHHHHHHHHHcCCC--eecCceEEEEEeecCCc-----ee-EEEEec
Confidence            000000   111111100  111111  3568889999999999988  99999999999876531     00 233322


Q ss_pred             eecCCCeEEEEEeCEEEEccCCCCCC
Q 044575          151 KEKKADKVVEEVFDAVVVATGHYSYP  176 (454)
Q Consensus       151 ~~~~~~~~~~~~~d~vViAtG~~~~p  176 (454)
                       ++.     ++++|+||+|||..+.|
T Consensus       151 -~~~-----~~~a~~VIiAtGG~S~p  170 (253)
T d2gqfa1         151 -NST-----QWQCKNLIVATGGLSMP  170 (253)
T ss_dssp             -TTE-----EEEESEEEECCCCSSCG
T ss_pred             -CCE-----EEEeCEEEEcCCccccc
Confidence             222     78999999999955444

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-16  Score=140.49  Aligned_cols=48  Identities=33%  Similarity=0.506  Sum_probs=44.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      +|||+||||||+|++||.++++.|.+|+|||+ ..+||.|.+.+|.+++
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n~g~~~~k   50 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKK   50 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccccchhhhhh
Confidence            59999999999999999999999999999998 5799999998887765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.57  E-value=2.4e-15  Score=133.45  Aligned_cols=48  Identities=29%  Similarity=0.425  Sum_probs=45.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      ++||+||||||+|+.||..+++.|.+|+|||++ .+||+|.+.+|.|++
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~gc~p~k   52 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSK   52 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcccccccccch
Confidence            589999999999999999999999999999985 699999999998876

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.56  E-value=2.6e-15  Score=135.95  Aligned_cols=150  Identities=23%  Similarity=0.241  Sum_probs=92.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecC---------------Cc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS---------------PR   76 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~---------------~~   76 (454)
                      ++||+|||||++|++||..|+++|++|+||||++.+|+.+...............+..+....               ..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            489999999999999999999999999999999998875433211110000000000000000               00


Q ss_pred             cc---cccCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575           77 EI---MGYTDFPFVLK-KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE  152 (454)
Q Consensus        77 ~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~  152 (454)
                      ..   +...+.++... .+...+......++.+.|.+.+++.++.  ++++++|++|...++.         .+.|.+.+
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~---------~~~v~~~~  150 (251)
T d2i0za1          82 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQ---------TKAVILQT  150 (251)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTE---------EEEEEETT
T ss_pred             HHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCc--ccCCcEEEEEEEECCE---------EEEEEeCC
Confidence            00   00011111110 0001112234578888999999999988  9999999999887542         34466665


Q ss_pred             cCCCeEEEEEeCEEEEccCCCCCCC
Q 044575          153 KKADKVVEEVFDAVVVATGHYSYPR  177 (454)
Q Consensus       153 ~~~~~~~~~~~d~vViAtG~~~~p~  177 (454)
                      ++     .+++|+||+|||..+.|.
T Consensus       151 g~-----~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         151 GE-----VLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             CC-----EEECSCEEECCCCSSSGG
T ss_pred             CC-----eEecCeEEEccCCccccc
Confidence            54     789999999999666543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4e-16  Score=139.73  Aligned_cols=52  Identities=29%  Similarity=0.456  Sum_probs=48.3

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      |.++|||+||||||||++||.++++.|.+|+|||+++.+||+|.+.+|.+++
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~   53 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSK   53 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccc
Confidence            6778999999999999999999999999999999999999999988887654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.2e-14  Score=130.10  Aligned_cols=49  Identities=29%  Similarity=0.429  Sum_probs=43.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--------CCCcccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--------DVGGQWLYDPNTDQT   60 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--------~~GG~w~~~~~~~~~   60 (454)
                      .|||+||||||||++||.++++.|.+|+|||+.+        .+||.|...+|.+++
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k   59 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKK   59 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchh
Confidence            5899999999999999999999999999999743        478888888887665

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.52  E-value=1.2e-14  Score=124.56  Aligned_cols=147  Identities=17%  Similarity=0.126  Sum_probs=95.7

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCcCccc------------hh------hhccCCCeEEcCceeEE
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNISEGL------------SK------VISKHNNLHLHPQIDCL  263 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~~~~~------------~~------~l~~~~~i~~~~~v~~v  263 (454)
                      .||||+|||||++|+|+|..|.+.+  .+||++++.+......            ..      .............+..+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGI   80 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEEC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEee
Confidence            4799999999999999999999987  4799999887641110            00      00011111122233333


Q ss_pred             ec-CCcEEEeCCCEEeeceEEEccCcccCCcCCCCCC-------ceeeCCCCcccccCcccCCCCCCCceEecccccccc
Q 044575          264 RE-DGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKG-------IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG  335 (454)
Q Consensus       264 ~~-~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g-------~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~  335 (454)
                      .. ...+.+.+++++++|.+|+|||.+|+++++....       .+..+... .....+.+..+..+++|++|+......
T Consensus        81 ~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~iGd~~~~~~  159 (186)
T d1fcda1          81 DPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGW-CPVDIKTFESSIHKGIHVIGDASIANP  159 (186)
T ss_dssp             CTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSS-EEBCSSSCBBSSSTTEEECTTSEECTT
T ss_pred             eeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccccc-ccceeeeeecccccCceEeccccccCC
Confidence            22 2357788999999999999999999988765211       11112221 123333333345699999999875432


Q ss_pred             ----hhHHHHHHHHHHHHHc
Q 044575          336 ----FPFFESQAKWIAQLLS  351 (454)
Q Consensus       336 ----~~~a~~qa~~~a~~i~  351 (454)
                          ...|..||+.+|++|.
T Consensus       160 ~p~~~~~A~~q~~~~A~ni~  179 (186)
T d1fcda1         160 MPKSGYSANSQGKVAAAAVV  179 (186)
T ss_dssp             CCSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHHH
Confidence                3588899999998874

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.51  E-value=2e-14  Score=113.31  Aligned_cols=103  Identities=16%  Similarity=0.331  Sum_probs=79.4

Q ss_pred             CCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh--------c
Q 044575          178 LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI--------S  249 (454)
Q Consensus       178 ~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l--------~  249 (454)
                      +|++||.+.    .+.+.+....+.  .++|+|||||++|+|+|..+++.|.+||+++|++++.+.+++.+        .
T Consensus         1 ~P~IpG~e~----~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~   74 (117)
T d1onfa2           1 FPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK   74 (117)
T ss_dssp             CCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred             CcccCCHhH----cCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence            478889864    344544433332  58999999999999999999999999999999998866554432        2


Q ss_pred             c-CCCeEEcCceeEEec--CC--cEEEeCCCEEe-eceEEEcc
Q 044575          250 K-HNNLHLHPQIDCLRE--DG--RVTFVDGCWVT-ADTILYCT  286 (454)
Q Consensus       250 ~-~~~i~~~~~v~~v~~--~~--~v~~~dG~~i~-~D~vI~at  286 (454)
                      + .+++++++.|++++.  ++  .+.++||+.++ +|.||+|.
T Consensus        75 ~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          75 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             hCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            2 358999999999963  33  47789999886 89999984

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.50  E-value=4.6e-15  Score=117.86  Aligned_cols=83  Identities=14%  Similarity=0.238  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-cchh--------hhccC-CCeEEcCceeEEecCCcEEEeC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-GLSK--------VISKH-NNLHLHPQIDCLREDGRVTFVD  273 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-~~~~--------~l~~~-~~i~~~~~v~~v~~~~~v~~~d  273 (454)
                      .+++++|||||++|+|+|..|++.+.+||++++++++.+ .+.+        .+.++ ++++++..|+++..+ .|+++|
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~-~v~l~d  107 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG-VVLLDD  107 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETT-EEEETT
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC-EEEECC
Confidence            468999999999999999999999999999999998754 3332        23333 578899999999755 699999


Q ss_pred             CCEEeeceEEEccC
Q 044575          274 GCWVTADTILYCTG  287 (454)
Q Consensus       274 G~~i~~D~vI~atG  287 (454)
                      |++++||.||+|+|
T Consensus       108 g~~i~~D~vi~a~G  121 (121)
T d1d7ya2         108 GTRIAADMVVVGIG  121 (121)
T ss_dssp             SCEEECSEEEECSC
T ss_pred             CCEEECCEEEEeeC
Confidence            99999999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.9e-14  Score=124.05  Aligned_cols=139  Identities=14%  Similarity=0.094  Sum_probs=100.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCcC---ccchhh---------------------------------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNIS---EGLSKV---------------------------------  247 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~~---~~~~~~---------------------------------  247 (454)
                      .++||||+|.+|+++|..|.+.+  .+|+++.+.+...   +.+.+.                                 
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            57899999999999999998875  4699998754330   000000                                 


Q ss_pred             --------hc-cCCCeEEcCceeEEecCC-cEEEeCCCEEeeceEEEccCcccCCcCC---------CCCCceeeCCCCc
Q 044575          248 --------IS-KHNNLHLHPQIDCLREDG-RVTFVDGCWVTADTILYCTGYSYSFPFL---------DTKGIVVVDDDRV  308 (454)
Q Consensus       248 --------l~-~~~~i~~~~~v~~v~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l---------~~~g~i~v~~~~~  308 (454)
                              +. ..++++++..|++++.+. .|+++||++++||.+|+|||..|+...+         +..+.+.+|+.++
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~  164 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQ  164 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCE
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcC
Confidence                    01 113567888999997443 7999999999999999999987664332         2335666776554


Q ss_pred             ccccCcccCCCCCCCceEecccccc----------cchhHHHHHHHHHHHHHcCCCC
Q 044575          309 GPLYEHTFPPSLAPSLSFVGIPRKL----------IGFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       309 ~~~~~~~~~~~~~p~l~~iG~~~~~----------~~~~~a~~qa~~~a~~i~g~~~  355 (454)
                                +. |++|++|++...          ..++.|..||+.+|++|.|..+
T Consensus       165 ----------~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~  210 (213)
T d1m6ia1         165 ----------AR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK  210 (213)
T ss_dssp             ----------EE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             ----------cC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence                      33 789999988633          2346899999999999999753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.4e-14  Score=114.32  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhc---------cCCCeEEcCceeEEecCC----cEEE
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVIS---------KHNNLHLHPQIDCLREDG----RVTF  271 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~---------~~~~i~~~~~v~~v~~~~----~v~~  271 (454)
                      +++|+|||+|++|+|+|..+++.|.+||+++|.+++.+.+++.+.         +.+++++++.|+++..++    .+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~  100 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLEL  100 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEE
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEE
Confidence            489999999999999999999999999999999988666544332         235889999999987543    4778


Q ss_pred             eCCCEEeeceEEEccC
Q 044575          272 VDGCWVTADTILYCTG  287 (454)
Q Consensus       272 ~dG~~i~~D~vI~atG  287 (454)
                      +||+++++|.||+|||
T Consensus       101 ~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2         101 EDGRSETVDCLIWAIG  116 (116)
T ss_dssp             TTSCEEEESEEEECSC
T ss_pred             CCCCEEEcCEEEEecC
Confidence            8999999999999998

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.47  E-value=4.2e-14  Score=126.12  Aligned_cols=50  Identities=30%  Similarity=0.460  Sum_probs=45.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT   60 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~   60 (454)
                      ..|||+|||||||||+||.+|++.|.+|+|||+.+.+||.|...+|.+.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~   54 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSK   54 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhh
Confidence            35999999999999999999999999999999999999999888776654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.47  E-value=3.8e-15  Score=132.68  Aligned_cols=49  Identities=35%  Similarity=0.479  Sum_probs=41.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC------CCcccccCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD------VGGQWLYDPNTDQ   59 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~------~GG~w~~~~~~~~   59 (454)
                      ++|||+||||||||++||.++++.|.+|+|||+...      +||.|.+.+|.++
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~   56 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPS   56 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchh
Confidence            579999999999999999999999999999998543      5666666655443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.2e-13  Score=106.36  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=81.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-----------------------------------------   59 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-----------------------------------------   59 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-----------------------------------------
Confidence            478999999999999999999999999999998754110                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             ..+++.+++.+..++.++.  ++++++|+.+...++.         ..++++.++.     ++.+|.||+|||
T Consensus        60 -------~d~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~~---------~~~v~~~~g~-----~~~~D~vi~a~G  116 (116)
T d1gesa2          60 -------FDPMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDG---------SLTLELEDGR-----SETVDCLIWAIG  116 (116)
T ss_dssp             -------SCHHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTS---------CEEEEETTSC-----EEEESEEEECSC
T ss_pred             -------cchhhHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCc---------EEEEEECCCC-----EEEcCEEEEecC
Confidence                   0167889999999999998  9999999999887654         6677777765     789999999998

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.47  E-value=2.5e-13  Score=118.07  Aligned_cols=139  Identities=19%  Similarity=0.246  Sum_probs=97.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCcC---ccch------------------hhhc-cCCCeEEcCceeE
Q 044575          207 VVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNIS---EGLS------------------KVIS-KHNNLHLHPQIDC  262 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~~---~~~~------------------~~l~-~~~~i~~~~~v~~  262 (454)
                      +|+|||||++|+|+|..|.+.+  .+|++++|.+...   ..+.                  +.+. +..+++++..|++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            6999999999999999999984  4799999876541   1111                  1111 2246788899999


Q ss_pred             EecCC-cEEEe---CCC--EEeeceEEEccCcccC--------CcCC------CCCCceeeCCCCcccccCcccCCCCCC
Q 044575          263 LREDG-RVTFV---DGC--WVTADTILYCTGYSYS--------FPFL------DTKGIVVVDDDRVGPLYEHTFPPSLAP  322 (454)
Q Consensus       263 v~~~~-~v~~~---dG~--~i~~D~vI~atG~~~~--------~~~l------~~~g~i~v~~~~~~~~~~~~~~~~~~p  322 (454)
                      ++.++ .|++.   +|+  ++++|.+|+|+|..|+        ..++      +++|.+.+|+...          ++.|
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~----------T~~~  151 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMR----------TSEP  151 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCB----------CSST
T ss_pred             EeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCccc----------cccc
Confidence            98654 45543   454  3679999999988754        3332      3456666666555          4579


Q ss_pred             CceEeccccccc-----------chhHHHHHHHHHHHHHcCCCC
Q 044575          323 SLSFVGIPRKLI-----------GFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       323 ~l~~iG~~~~~~-----------~~~~a~~qa~~~a~~i~g~~~  355 (454)
                      ++|++||+....           ....|..||+.+|++|.+..+
T Consensus       152 ~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~  195 (198)
T d1nhpa1         152 DVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK  195 (198)
T ss_dssp             TEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred             ceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence            999999987431           234688999999999987654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.44  E-value=9e-14  Score=124.85  Aligned_cols=50  Identities=26%  Similarity=0.402  Sum_probs=44.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCC--------CCcccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHD--------VGGQWLYDPNTDQT   60 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~--------~GG~w~~~~~~~~~   60 (454)
                      ++|||+||||||||++||.++++.|. +|+|+|+...        +||+|.+.+|.|++
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K   60 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK   60 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhh
Confidence            57999999999999999999999986 6999998664        79999999998876

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=1.6e-15  Score=136.24  Aligned_cols=148  Identities=24%  Similarity=0.206  Sum_probs=89.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC-------CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG-------HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFP   85 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g-------~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (454)
                      ++|+|||||||||+||.+|+++|       ++|+|||+.+.+||.|.+.-                              
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi------------------------------   52 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV------------------------------   52 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTS------------------------------
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeecc------------------------------
Confidence            68999999999999999999987       57999999999999998531                              


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           86 FVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                              .+.+.....+.++........++.  ++++++|..   .               +...+      ....||+
T Consensus        53 --------~p~~~~~~~~~~~~~~~~~~~g~~--~~~~~~v~~---~---------------~~~~~------~~~~~~~   98 (239)
T d1lqta2          53 --------APDHPKIKSISKQFEKTAEDPRFR--FFGNVVVGE---H---------------VQPGE------LSERYDA   98 (239)
T ss_dssp             --------CTTCTGGGGGHHHHHHHHTSTTEE--EEESCCBTT---T---------------BCHHH------HHHHSSE
T ss_pred             --------CcccccchhhhhhhhhhhccCCce--EEEEEEecc---c---------------cchhh------hhccccc
Confidence                    011112233444444444444544  566654411   0               00011      0235999


Q ss_pred             EEEccCCCCCCCCCCCCCcCCccc----eeEEeecCCCC------CCCCCCeEEEEcCCCCHHHHHHHHhh
Q 044575          166 VVVATGHYSYPRLPSIKGMDKWKR----KQMHSHIYRVP------EPFRNEVVVVVGNSLSGQDISMELVE  226 (454)
Q Consensus       166 vViAtG~~~~p~~p~i~G~~~~~~----~~~~~~~~~~~------~~~~~k~vvVVG~G~sg~e~A~~l~~  226 (454)
                      +++|||  ..+..+.++|......    ..+........      ....+++++|+|+|..++|++..+..
T Consensus        99 v~~atG--a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~  167 (239)
T d1lqta2          99 VIYAVG--AQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  167 (239)
T ss_dssp             EEECCC--CCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             eeeecC--CCccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence            999999  5555555555433111    00100000000      01235788899999999999886553

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.42  E-value=7.5e-15  Score=117.09  Aligned_cols=107  Identities=15%  Similarity=0.275  Sum_probs=79.0

Q ss_pred             CCCCCCCCCcCCccceeEEeecCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh---
Q 044575          175 YPRLPSIKGMDKWKRKQMHSHIYRVPEP-----FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK---  246 (454)
Q Consensus       175 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~-----~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~---  246 (454)
                      +|+.|++||.+.    .+......+.+.     ..+++++|||||++|+|+|..|++.|.+||+++|.+.+.+ +++   
T Consensus         1 R~r~p~ipG~e~----~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~   75 (122)
T d1xhca2           1 RAREPQIKGKEY----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELS   75 (122)
T ss_dssp             EECCCCSBTGGG----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHH
T ss_pred             CCCCcCCCCccc----eEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHH
Confidence            478899999753    222222211110     1348999999999999999999999999999999988743 322   


Q ss_pred             -----hhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCc
Q 044575          247 -----VISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       247 -----~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~  288 (454)
                           .+.+ ..++++++.++++..++  ++.+++.+++|.||+|||.
T Consensus        76 ~~~~~~l~~~GV~~~~~~~v~~~~~~~--v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          76 NMIKDMLEETGVKFFLNSELLEANEEG--VLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHTTEEEECSCCEEEECSSE--EEETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHCCcEEEeCCEEEEEeCCE--EEeCCCEEECCEEEEEEEe
Confidence                 2222 34788899999997653  4678889999999999995

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.40  E-value=2.5e-13  Score=108.11  Aligned_cols=108  Identities=14%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh--------
Q 044575          176 PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV--------  247 (454)
Q Consensus       176 p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~--------  247 (454)
                      |++|.+|+.+    .++.+.+...... .+++++|||+|++|+|+|..+++.|.+||++++++++.+.+++.        
T Consensus         2 ~~lP~ip~~~----~i~ts~~~l~l~~-~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~   76 (125)
T d1ojta2           2 TKLPFIPEDP----RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQ   76 (125)
T ss_dssp             CCCSSCCCCT----TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCCC----cEEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHH
Confidence            5666666532    3555555444433 35899999999999999999999999999999999886655433        


Q ss_pred             hccC-CCeEEcCceeEEecC--C-cEEEeCC----CEEeeceEEEccCc
Q 044575          248 ISKH-NNLHLHPQIDCLRED--G-RVTFVDG----CWVTADTILYCTGY  288 (454)
Q Consensus       248 l~~~-~~i~~~~~v~~v~~~--~-~v~~~dG----~~i~~D~vI~atG~  288 (454)
                      +.++ .+++.++.+++++.+  + .|.+.++    +++++|.|++|+|+
T Consensus        77 l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          77 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             HHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            2232 478889999988633  2 4555543    36899999999995

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=7.3e-12  Score=99.24  Aligned_cols=100  Identities=22%  Similarity=0.297  Sum_probs=83.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+.+|..|++.|.+|+++|+++++.                                           
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------------------------------   59 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------------------------------   59 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------------------------------
Confidence            4789999999999999999999999999999987541                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                         +.+  ..++.+++++..++.++.  ++++++|++++..+++.        ...++..++.+++..++.+|.|++|
T Consensus        60 ---~~~--d~ei~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~--------~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          60 ---ASM--DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKN--------VVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ---SSS--CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTT--------EEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ---hhh--hhhhHHHHHHHHHhccce--EEeCCEEEEEEEeCCCc--------EEEEEEEeCCCCCeEEEEeCEEEEC
Confidence               011  178999999999999988  99999999999876542        4566777766677788999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.35  E-value=9.6e-12  Score=98.12  Aligned_cols=98  Identities=26%  Similarity=0.302  Sum_probs=80.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+..|..|++.|.+|+++++++++.                                    |.     
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll------------------------------------~~-----   60 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL------------------------------------PA-----   60 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS------------------------------------TT-----
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC------------------------------------Cc-----
Confidence            4789999999999999999999999999999987541                                    00     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                             -..++..+++++.++.++.  ++++++|++++..++          .-++++.+++  ...++.||+|++|+|
T Consensus        61 -------~d~ei~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~----------~v~v~~~~~~--~~~~~~~D~vlvAvG  119 (119)
T d3lada2          61 -------VDEQVAKEAQKILTKQGLK--ILLGARVTGTEVKNK----------QVTVKFVDAE--GEKSQAFDKLIVAVG  119 (119)
T ss_dssp             -------SCHHHHHHHHHHHHHTTEE--EEETCEEEEEEECSS----------CEEEEEESSS--EEEEEEESEEEECSC
T ss_pred             -------ccchhHHHHHHHHHhcCce--eecCcEEEEEEEeCC----------EEEEEEEECC--CCEEEECCEEEEeeC
Confidence                   1278899999999999988  999999999988754          5566666543  345789999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.35  E-value=7.9e-13  Score=104.35  Aligned_cols=84  Identities=17%  Similarity=0.239  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhh---cCeEEEecccCCcCccchhhh--------cc-CCCeEEcCceeEEecC--C--c
Q 044575          205 NEVVVVVGNSLSGQDISMELVEV---AKEVHLSAKSLNISEGLSKVI--------SK-HNNLHLHPQIDCLRED--G--R  268 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~---~~~V~l~~r~~~~~~~~~~~l--------~~-~~~i~~~~~v~~v~~~--~--~  268 (454)
                      +++++|||||++|+|+|..+++.   +.+|++++|.+.+.+.+++.+        .+ .+++++++.|+++..+  +  .
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~   97 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRH   97 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEE
Confidence            48999999999999999887765   789999999998876654432        22 3589999999999743  2  4


Q ss_pred             EEEeCCCEEeeceEEEccCc
Q 044575          269 VTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       269 v~~~dG~~i~~D~vI~atG~  288 (454)
                      ++++||++++||.||+|||+
T Consensus        98 v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          98 VVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEETTSCEEEESEEEECSCE
T ss_pred             EEECCCCEEEcCEEEEecCC
Confidence            88899999999999999995

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.34  E-value=5.5e-13  Score=119.16  Aligned_cols=50  Identities=28%  Similarity=0.361  Sum_probs=43.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeC--------CCCCcccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQN--------HDVGGQWLYDPNTDQT   60 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~--------~~~GG~w~~~~~~~~~   60 (454)
                      +.|||+||||||||++||.++++.|. .|+|+|+.        +.+||.|.+.+|.|++
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k   60 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKK   60 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccch
Confidence            46999999999999999999999886 68888874        4689999999888775

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.33  E-value=2.7e-12  Score=117.37  Aligned_cols=60  Identities=20%  Similarity=0.063  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           97 FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        97 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      +.....+...+.+.+++.|+.  ++.+++|++|++.++          .|.|++.++      ++.+|+||+|+|.++
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~----------~~~V~t~~g------~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDGE----------ALFIKTPSG------DVWANHVVVASGVWS  206 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSSS----------SEEEEETTE------EEEEEEEEECCGGGT
T ss_pred             eeecccchhHHHHHHHHcCCE--EecceEEEeEEeecc----------eEEEecCCe------EEEcCEEEECCCccH
Confidence            456677888888889999987  889999999986543          788887654      689999999999754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=5.8e-14  Score=121.82  Aligned_cols=43  Identities=28%  Similarity=0.515  Sum_probs=39.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~   54 (454)
                      .++|+||||||+||+||.+|+++|+ +|+||||++.+||.|.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            5799999999999999999999998 599999999999988753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.31  E-value=2.8e-11  Score=95.21  Aligned_cols=96  Identities=19%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|.+.|.+|+|+|+.+.+...+                                        
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~----------------------------------------   61 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF----------------------------------------   61 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS----------------------------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceecccc----------------------------------------
Confidence            4789999999999999999999999999999987642110                                        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                              ..++.+++.+..++.++.  ++++++|++++..++          ..+++...+  +...++.+|.|++.
T Consensus        62 --------d~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~~----------~~~v~~~~~--g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          62 --------EKQMAAIIKKRLKKKGVE--VVTNALAKGAEERED----------GVTVTYEAN--GETKTIDADYVLVT  117 (117)
T ss_dssp             --------CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETT----------EEEEEEEET--TEEEEEEESEEEEC
T ss_pred             --------cchhHHHHHHHHHhcCCE--EEcCCEEEEEEEcCC----------EEEEEEEeC--CCEEEEEeEEEEEC
Confidence                    167889999999999988  999999999987754          455666543  34567899999984

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.31  E-value=9.6e-12  Score=97.96  Aligned_cols=96  Identities=22%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++++|||||+.|+.+|..+.+.   |.+|+++|+.+.+.                                        
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il----------------------------------------   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL----------------------------------------   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc----------------------------------------
Confidence            47899999999999999876654   88999999976541                                        


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                            +.+  ..++.+++.+..++.++.  ++++++|++|+..+++         ...+.+.++.     ++.||.||+
T Consensus        58 ------~~~--d~~~~~~~~~~l~~~GI~--v~~~~~v~~i~~~~~g---------~~~v~~~~g~-----~i~~D~Vi~  113 (117)
T d1feca2          58 ------RGF--DSELRKQLTEQLRANGIN--VRTHENPAKVTKNADG---------TRHVVFESGA-----EADYDVVML  113 (117)
T ss_dssp             ------TTS--CHHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTS---------CEEEEETTSC-----EEEESEEEE
T ss_pred             ------ccc--cchhhHHHHHHHhhCcEE--EEcCCEEEEEEECCCC---------EEEEEECCCC-----EEEcCEEEE
Confidence                  011  167889999999999988  9999999999876554         5567777765     789999999


Q ss_pred             ccC
Q 044575          169 ATG  171 (454)
Q Consensus       169 AtG  171 (454)
                      |+|
T Consensus       114 a~G  116 (117)
T d1feca2         114 AIG  116 (117)
T ss_dssp             CSC
T ss_pred             ecC
Confidence            999

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=1.5e-11  Score=99.00  Aligned_cols=99  Identities=22%  Similarity=0.229  Sum_probs=79.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      ..++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                        
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~----------------------------------------   73 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER----------------------------------------   73 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT----------------------------------------
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc----------------------------------------
Confidence            4589999999999999999999999999999998754110                                        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCc-EEEEEeecCCCeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIK-WVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                             ...+++.+++.+..++.++.  ++++++|++|+...+..        . -.+.+.++.     ++.+|.||+|
T Consensus        74 -------~~~~~~~~~~~~~~~~~GV~--i~~~~~v~~i~~~~~~~--------~v~~v~~~~G~-----~i~~D~vi~a  131 (133)
T d1q1ra2          74 -------VTAPPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQ--------KVTAVLCEDGT-----RLPADLVIAG  131 (133)
T ss_dssp             -------TSCHHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTC--------CEEEEEETTSC-----EEECSEEEEC
T ss_pred             -------ccchhhhhhhhhcccccccE--EEeCCeEEEEEEeCCCc--------eEEEEECCCCC-----EEECCEEEEe
Confidence                   01167888898999999998  99999999998865431        2 235566654     7899999999


Q ss_pred             cC
Q 044575          170 TG  171 (454)
Q Consensus       170 tG  171 (454)
                      +|
T Consensus       132 ~G  133 (133)
T d1q1ra2         132 IG  133 (133)
T ss_dssp             CC
T ss_pred             eC
Confidence            98

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.30  E-value=9.9e-12  Score=97.59  Aligned_cols=97  Identities=13%  Similarity=0.217  Sum_probs=79.6

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      .+.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.                                         
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-----------------------------------------   58 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-----------------------------------------   58 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-----------------------------------------
T ss_pred             CCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-----------------------------------------
Confidence            345789999999999999999999999999999987541                                         


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE-EeCEEEE
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE-VFDAVVV  168 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vVi  168 (454)
                           +.|  .+++.+++.+..++.++.  ++++++|++|+..+++         ..++++.++.     .+ .||.||+
T Consensus        59 -----~~~--d~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~---------~~~v~~~~G~-----~~~~~D~Vi~  115 (117)
T d1onfa2          59 -----RKF--DESVINVLENDMKKNNIN--IVTFADVVEIKKVSDK---------NLSIHLSDGR-----IYEHFDHVIY  115 (117)
T ss_dssp             -----TTS--CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTT---------CEEEEETTSC-----EEEEESEEEE
T ss_pred             -----ccc--cHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCC---------eEEEEECCCC-----EEEeCCEEEE
Confidence                 111  168889999999988998  9999999999887654         6778887764     44 5899999


Q ss_pred             cc
Q 044575          169 AT  170 (454)
Q Consensus       169 At  170 (454)
                      |.
T Consensus       116 AI  117 (117)
T d1onfa2         116 CV  117 (117)
T ss_dssp             CC
T ss_pred             eC
Confidence            83

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.29  E-value=2.7e-12  Score=101.09  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCCcCccchhhh--------ccC-CCeEEcCceeEEec--CC--
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLNISEGLSKVI--------SKH-NNLHLHPQIDCLRE--DG--  267 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~~~~~~~~~l--------~~~-~~i~~~~~v~~v~~--~~--  267 (454)
                      .+++++|||||++|+|+|..++.++   .+||+++|.+++.+.+++.+        +++ ++++++.++++++.  ++  
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~   98 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK   98 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE
Confidence            3589999999999999999888765   47999999999877664433        233 58999999999963  22  


Q ss_pred             cEEEeCCCEEeeceEEEcc
Q 044575          268 RVTFVDGCWVTADTILYCT  286 (454)
Q Consensus       268 ~v~~~dG~~i~~D~vI~at  286 (454)
                      .|.++||++++||.||+|.
T Consensus        99 ~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          99 SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEETTSCEEEESEEEECS
T ss_pred             EEEECCCcEEEeCEEEEeC
Confidence            5889999999999999984

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.29  E-value=3.5e-12  Score=100.73  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             eeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh--------hccC-CCeEEcCce
Q 044575          190 KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV--------ISKH-NNLHLHPQI  260 (454)
Q Consensus       190 ~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~--------l~~~-~~i~~~~~v  260 (454)
                      .++.+.+....+. .+++++|||+|++|+|+|..+++.|++|+++.+++++.+.+++.        +.++ .++++++.+
T Consensus         8 ~v~~s~~~l~l~~-~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v   86 (119)
T d3lada2           8 VIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV   86 (119)
T ss_dssp             SEEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred             EEEchhHhhCccc-CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence            3556655444433 44899999999999999999999999999999999886655443        3333 479999999


Q ss_pred             eEEecCC---cEEEeCC---CEEeeceEEEccC
Q 044575          261 DCLREDG---RVTFVDG---CWVTADTILYCTG  287 (454)
Q Consensus       261 ~~v~~~~---~v~~~dG---~~i~~D~vI~atG  287 (454)
                      ++++.++   .+++.++   +++++|.||+|+|
T Consensus        87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            9997544   4666665   4678999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.28  E-value=2.7e-12  Score=100.85  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=72.1

Q ss_pred             eeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh--------cc-CCCeEEcCce
Q 044575          190 KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI--------SK-HNNLHLHPQI  260 (454)
Q Consensus       190 ~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l--------~~-~~~i~~~~~v  260 (454)
                      +++.+.+...... .+++++|||||++|+|+|..+++.|++||++++.+++.+.+++.+        .+ ..++++++.|
T Consensus         7 ~~~~s~~~l~~~~-~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V   85 (115)
T d1lvla2           7 PVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSV   85 (115)
T ss_dssp             TEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred             cEECChHHhCccc-CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEE
Confidence            4555554433333 348999999999999999999999999999999999866654332        22 2578889999


Q ss_pred             eEEecCCcEEEe-C--CCEEeeceEEEccC
Q 044575          261 DCLREDGRVTFV-D--GCWVTADTILYCTG  287 (454)
Q Consensus       261 ~~v~~~~~v~~~-d--G~~i~~D~vI~atG  287 (454)
                      +++..+..+... +  ++++++|.||+|||
T Consensus        86 ~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          86 EGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            999654322222 2  24689999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.28  E-value=1.5e-11  Score=97.21  Aligned_cols=94  Identities=22%  Similarity=0.276  Sum_probs=76.0

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK   89 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (454)
                      ...++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                       
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------   68 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR---------------------------------------   68 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------------------------------------
T ss_pred             hcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc---------------------------------------
Confidence            34589999999999999999999999999999998753100                                       


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                              .-.+++.+++++..++.|+.  ++++++|+++...              .+++.++.     ++.+|.||+|
T Consensus        69 --------~~~~~~~~~~~~~l~~~GV~--i~~~~~v~~~~~~--------------~v~l~dg~-----~i~~D~vi~a  119 (121)
T d1d7ya2          69 --------AAPATLADFVARYHAAQGVD--LRFERSVTGSVDG--------------VVLLDDGT-----RIAADMVVVG  119 (121)
T ss_dssp             --------TSCHHHHHHHHHHHHTTTCE--EEESCCEEEEETT--------------EEEETTSC-----EEECSEEEEC
T ss_pred             --------cCCHHHHHHHHHHHHHCCcE--EEeCCEEEEEeCC--------------EEEECCCC-----EEECCEEEEe
Confidence                    01268888999999888988  8999999876521              36676665     8999999999


Q ss_pred             cC
Q 044575          170 TG  171 (454)
Q Consensus       170 tG  171 (454)
                      +|
T Consensus       120 ~G  121 (121)
T d1d7ya2         120 IG  121 (121)
T ss_dssp             SC
T ss_pred             eC
Confidence            98

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.2e-12  Score=102.76  Aligned_cols=110  Identities=19%  Similarity=0.281  Sum_probs=88.6

Q ss_pred             CCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhhhccC--CC
Q 044575          178 LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKVISKH--NN  253 (454)
Q Consensus       178 ~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~l~~~--~~  253 (454)
                      .+++||.++|.++.+|.+..++...|+||+|+|||+|.+|+|-|..|++.+++|||++|++.+.  +.+.+.+.+.  ++
T Consensus         3 ~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~I~   82 (126)
T d1fl2a2           3 NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVD   82 (126)
T ss_dssp             CCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEE
T ss_pred             cCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccccccccccccccccee
Confidence            4578899999999999988888889999999999999999999999999999999999998763  2233333333  45


Q ss_pred             eEEcCceeEEecCC----cEEEeC---CC--EEeeceEEEccC
Q 044575          254 LHLHPQIDCLREDG----RVTFVD---GC--WVTADTILYCTG  287 (454)
Q Consensus       254 i~~~~~v~~v~~~~----~v~~~d---G~--~i~~D~vI~atG  287 (454)
                      ++.+..+.++.+++    .|++.|   |+  ++++|.|+++.|
T Consensus        83 v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          83 IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             EEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            67788888887653    355654   54  478999999988

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.26  E-value=1.3e-11  Score=96.74  Aligned_cols=95  Identities=23%  Similarity=0.293  Sum_probs=73.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+.+|..|++.|.+|+++|+.+++.                                           
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-------------------------------------------   57 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------------------   57 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-------------------------------------------
Confidence            4789999999999999999999999999999987541                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.+  ..++.+++.+..++.++.  ++++++|++++..            .. +... .. +...++.+|.||+|+|
T Consensus        58 ---~~~--d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~------------~~-~~~~-~~-~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          58 ---PTY--DSELTAPVAESLKKLGIA--LHLGHSVEGYENG------------CL-LAND-GK-GGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ---TTS--CHHHHHHHHHHHHHHTCE--EETTCEEEEEETT------------EE-EEEC-SS-SCCCEECCSCEEECCC
T ss_pred             ---ccc--cchhHHHHHHHHHhhcce--EEcCcEEEEEcCC------------eE-EEEE-cC-CCeEEEEcCEEEEecC
Confidence               001  157889999999999988  9999999988621            22 2222 11 2233789999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=5.1e-11  Score=94.21  Aligned_cols=103  Identities=19%  Similarity=0.317  Sum_probs=81.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+..|..|++.|.+|+|++++. +                                            
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~-~--------------------------------------------   54 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L--------------------------------------------   54 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-S--------------------------------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech-h--------------------------------------------
Confidence            4689999999999999999999999999998742 2                                            


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                        .+.|  .+++.+++.+..++.+++  ++++++|++++..++..     .. ...++...+.+++.....||.|++|+|
T Consensus        55 --l~~~--D~~~~~~l~~~l~~~Gv~--i~~~~~v~~~~~~~~~~-----~~-~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          55 --LRGF--DQDMANKIGEHMEEHGIK--FIRQFVPTKIEQIEAGT-----PG-RLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             --STTS--CHHHHHHHHHHHHHTTEE--EEESCEEEEEEEEECST-----TC-EEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             --hccC--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEecCCC-----cc-EEEEEEEECCCCcEEEEECCEEEEEeC
Confidence              0001  168889999999999998  99999999998764321     11 456666666555666778999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=6.3e-12  Score=99.61  Aligned_cols=95  Identities=13%  Similarity=0.183  Sum_probs=70.8

Q ss_pred             eeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh--------ccC-CCeEEcCce
Q 044575          190 KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI--------SKH-NNLHLHPQI  260 (454)
Q Consensus       190 ~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l--------~~~-~~i~~~~~v  260 (454)
                      .++.+.+...... ..++++|||+|++|+|+|..+++.|.+||++++++++.+.+++.+        .+. ++++.++.|
T Consensus         9 ~v~ts~~~~~l~~-~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v   87 (122)
T d1v59a2           9 KIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV   87 (122)
T ss_dssp             SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EEEehHHhhCccc-CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence            3555554433333 348999999999999999999999999999999999876655433        233 588999999


Q ss_pred             eEEec--CC---cEEEeCCC-----EEeeceEEEc
Q 044575          261 DCLRE--DG---RVTFVDGC-----WVTADTILYC  285 (454)
Q Consensus       261 ~~v~~--~~---~v~~~dG~-----~i~~D~vI~a  285 (454)
                      ++++.  ++   .+++.+++     ++++|.|++|
T Consensus        88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            98863  23   34555543     6889999986

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.24  E-value=6.8e-12  Score=101.02  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-chhh--------hcc-CCCeEEcCceeEEecCC------
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-LSKV--------ISK-HNNLHLHPQIDCLREDG------  267 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-~~~~--------l~~-~~~i~~~~~v~~v~~~~------  267 (454)
                      .+++|+|||||++|+|+|..|++.|.+|+++++.+++.+. +.+.        +.+ .++++++..|++++...      
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~  113 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVT  113 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEE
Confidence            4689999999999999999999999999999999987542 2222        222 35788999999986432      


Q ss_pred             cEEEeCCCEEeeceEEEccC
Q 044575          268 RVTFVDGCWVTADTILYCTG  287 (454)
Q Consensus       268 ~v~~~dG~~i~~D~vI~atG  287 (454)
                      .|.++||+++++|.||+|+|
T Consensus       114 ~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         114 AVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEEETTSCEEECSEEEECCC
T ss_pred             EEECCCCCEEECCEEEEeeC
Confidence            37789999999999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.2e-11  Score=93.23  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=78.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++++++.+-                                           
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------   58 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------------------   58 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------------------------------
Confidence            4789999999999999999999999999999987531                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC----CeEEEEEeCEEE
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA----DKVVEEVFDAVV  167 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~d~vV  167 (454)
                         +.+  ..++.+++.+..++.++.  ++++++|++|+..++          .+.++......    .......+|.|+
T Consensus        59 ---~~~--d~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~~----------g~~v~~~~~~~g~~~~~~~~~~~D~vl  121 (125)
T d3grsa2          59 ---RSF--DSMISTNCTEELENAGVE--VLKFSQVKEVKKTLS----------GLEVSMVTAVPGRLPVMTMIPDVDCLL  121 (125)
T ss_dssp             ---TTS--CHHHHHHHHHHHHHTTCE--EETTEEEEEEEEETT----------EEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred             ---cch--hhHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCC----------eEEEEEEEccCCcCcCccccccCCEEE
Confidence               001  167889999999999998  999999999987754          45555443221    123467899999


Q ss_pred             EccC
Q 044575          168 VATG  171 (454)
Q Consensus       168 iAtG  171 (454)
                      +|+|
T Consensus       122 ~a~G  125 (125)
T d3grsa2         122 WAIG  125 (125)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            9998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.1e-12  Score=101.25  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=73.0

Q ss_pred             CCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh--------ccC
Q 044575          180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI--------SKH  251 (454)
Q Consensus       180 ~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l--------~~~  251 (454)
                      .+||.+.    .+.+.+....+.. .|+++|||+|++|+|+|..+++.|.+||+++|++++.+.+++.+        .++
T Consensus         2 ~IPG~e~----~~ts~~~~~l~~~-pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~   76 (125)
T d3grsa2           2 QIPGASL----GITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENA   76 (125)
T ss_dssp             TSTTGGG----SBCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCccc----cCCHHHHhChhhc-CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHC
Confidence            3567653    2344444333332 48999999999999999999999999999999998866554332        223


Q ss_pred             -CCeEEcCceeEEecCC---cEEE---eCCC------EEeeceEEEccC
Q 044575          252 -NNLHLHPQIDCLREDG---RVTF---VDGC------WVTADTILYCTG  287 (454)
Q Consensus       252 -~~i~~~~~v~~v~~~~---~v~~---~dG~------~i~~D~vI~atG  287 (454)
                       .+++.++.++++..+.   .+.+   .+|.      .+++|.||+|||
T Consensus        77 Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          77 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence             5888999999986432   2222   2332      467999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.8e-12  Score=103.26  Aligned_cols=108  Identities=19%  Similarity=0.225  Sum_probs=85.2

Q ss_pred             CCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhhhc-----cCC
Q 044575          180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKVIS-----KHN  252 (454)
Q Consensus       180 ~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~l~-----~~~  252 (454)
                      ++||.+.|.++.+|.+..++...|++|+|+|||+|.||+|.|..|++.+++||+++|++.+.  +.+.+.+.     ...
T Consensus         2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i   81 (126)
T d1trba2           2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNI   81 (126)
T ss_dssp             CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSE
T ss_pred             cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccce
Confidence            57898899999999988888888999999999999999999999999999999999998762  22222222     223


Q ss_pred             CeEEcCceeEEecCC----cEEEeCC------CEEeeceEEEccC
Q 044575          253 NLHLHPQIDCLREDG----RVTFVDG------CWVTADTILYCTG  287 (454)
Q Consensus       253 ~i~~~~~v~~v~~~~----~v~~~dG------~~i~~D~vI~atG  287 (454)
                      .++.+..+.++.+++    .|++.|.      +++++|-|+++.|
T Consensus        82 ~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          82 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             eEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            455677888888754    3566653      2478999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.24  E-value=5.6e-12  Score=99.33  Aligned_cols=95  Identities=18%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             eeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh--------cc-CCCeEEcCce
Q 044575          190 KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI--------SK-HNNLHLHPQI  260 (454)
Q Consensus       190 ~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l--------~~-~~~i~~~~~v  260 (454)
                      .++.+.+...... .+++++|||||++|+|+|..+++.|.+||+++|.+++.+.+++.+        .+ .+++++++.+
T Consensus         8 ~i~~s~~~l~~~~-~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v   86 (117)
T d1ebda2           8 RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA   86 (117)
T ss_dssp             SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred             CEEChhHhhChhh-cCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence            3566655444433 348999999999999999999999999999999999866554332        22 3589999999


Q ss_pred             eEEecCC---cEEEe-CC--CEEeeceEEEc
Q 044575          261 DCLREDG---RVTFV-DG--CWVTADTILYC  285 (454)
Q Consensus       261 ~~v~~~~---~v~~~-dG--~~i~~D~vI~a  285 (454)
                      +++..++   .+.+. +|  +++++|.||++
T Consensus        87 ~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          87 KGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            9997433   34443 44  35889999974

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.24  E-value=5e-11  Score=94.46  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+.+|..+.+.|.+|+++|+++.+.                                    |.     
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l------------------------------------~~-----   63 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV------------------------------------PT-----   63 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS------------------------------------TT-----
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC------------------------------------ch-----
Confidence            4789999999999999999999999999999987541                                    00     


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                             -..++.+++.+..++.++.  ++++++|.+|+..++          ..+|++....+++..++.+|+|++|.
T Consensus        64 -------~d~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~~----------~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          64 -------MDAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSGD----------GVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             -------SCHHHHHHHHHHHHHSSCC--EECSEEEEEEECSSS----------SEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             -------hhhcchhhhhhhhhcccce--EEcCCceEEEEEccC----------eEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                   1168889999999999998  999999999997654          55666655444455678999999983

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.23  E-value=6.8e-12  Score=113.73  Aligned_cols=143  Identities=19%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc----cCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL----YDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      ..+|+||||||+|+++|..|+++|++|+||||++.++..+.    ..+.....+........... .+...+.+.+++..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~   82 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSIS-VPSSSMEYVDALTG   82 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTC-BCCCEEEEEETTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhc-cCCCcceeEeccCC
Confidence            47899999999999999999999999999999876532221    11000000000000000000 00000111111100


Q ss_pred             CCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575           88 LKKGR--DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA  165 (454)
Q Consensus        88 ~~~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  165 (454)
                      .....  ....+.....+.  ...........  ++++.+|.+++...+          .+++++.++.     ++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~v~~~~~~~~----------~v~v~~~dG~-----~~~~d~  143 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIY--GGLYELFGPER--YHTSKCLVGLSQDSE----------TVQMRFSDGT-----KAEANW  143 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHH--HHHHHHHCSTT--EETTCCEEEEEECSS----------CEEEEETTSC-----EEEESE
T ss_pred             ceecccccccccchhHHHH--HHHHHhcccce--eecCcEEEEEEeeCC----------ceEEEECCCC-----EEEEEE
Confidence            00000  000111112221  12222222333  899999999987654          7888888775     789999


Q ss_pred             EEEccCCCC
Q 044575          166 VVVATGHYS  174 (454)
Q Consensus       166 vViAtG~~~  174 (454)
                      +|.|.|.++
T Consensus       144 ~v~adG~~s  152 (265)
T d2voua1         144 VIGADGGAS  152 (265)
T ss_dssp             EEECCCTTC
T ss_pred             Eeccccccc
Confidence            999999654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.23  E-value=1.4e-11  Score=112.93  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  ++++++|.+|+..++          +|.|.+.++      ++.+|+||+|+|.++
T Consensus       148 ~p~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~----------~v~V~t~~g------~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         148 FSENCIRAYRELAEARGAK--VLTHTRVEDFDISPD----------SVKIETANG------SYTADKLIVSMGAWN  205 (281)
T ss_dssp             EHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSS----------CEEEEETTE------EEEEEEEEECCGGGH
T ss_pred             ccccccccccccccccccc--ccCCcEEEEEEEECC----------EEEEEECCc------EEEcCEEEECCCCcc
Confidence            4467888899999999987  999999999998754          788887654      689999999999654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.23  E-value=1.7e-11  Score=97.28  Aligned_cols=83  Identities=17%  Similarity=0.178  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-chh--------hhccC-CCeEEcCceeEEecCC--cEEE
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-LSK--------VISKH-NNLHLHPQIDCLREDG--RVTF  271 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-~~~--------~l~~~-~~i~~~~~v~~v~~~~--~v~~  271 (454)
                      .+++|+|||+|++|+|+|..+++.|.+||++++.+++.+. +++        .+.++ .++++++.++++..++  ..++
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~  108 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVV  108 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEE
Confidence            5689999999999999999999999999999998877432 222        23333 5899999999998765  4568


Q ss_pred             eCCCEEeeceEEEcc
Q 044575          272 VDGCWVTADTILYCT  286 (454)
Q Consensus       272 ~dG~~i~~D~vI~at  286 (454)
                      .||++++||.||+|.
T Consensus       109 ~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2         109 TDKNAYDADLVVVAV  123 (123)
T ss_dssp             ESSCEEECSEEEECS
T ss_pred             eCCCEEECCEEEEEC
Confidence            899999999999984

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.22  E-value=1.3e-10  Score=92.01  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+.                                           
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------------------------------   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------------------   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------------------------------
Confidence            4789999999999999999999999999999976431                                           


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                         +.  -.+++.+++.+..++.++.  ++++++|.+|+..+++         .+........ +...++.+|.||+|+|
T Consensus        59 ---~~--~d~~~~~~~~~~l~~~gI~--v~~~~~v~~i~~~~~~---------~~~~~~~~~~-~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          59 ---LI--KDNETRAYVLDRMKEQGME--IISGSNVTRIEEDANG---------RVQAVVAMTP-NGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ---TC--CSHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTS---------BEEEEEEEET-TEEEEEECSCEEECCC
T ss_pred             ---cc--cccchhhhhhhhhhccccE--EEcCCEEEEEEecCCc---------eEEEEEEEeC-CCCEEEEcCEEEEEEC
Confidence               01  1157888999999999988  9999999999987654         3332222211 3345799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.22  E-value=2.1e-11  Score=96.73  Aligned_cols=99  Identities=21%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++++|||||+.|+.+|..+++.|.+|+++|+.+.+...+                                        
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~----------------------------------------   65 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA----------------------------------------   65 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc----------------------------------------
Confidence            4789999999999999999999999999999987542111                                        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                              ..++.+++.+..++.++.  ++++++|.+++..++          ...|++.+.+ +...++.+|+|++|+|
T Consensus        66 --------d~~~~~~l~~~l~~~gv~--~~~~~~v~~v~~~~~----------g~~v~~~~~~-g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          66 --------DRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKED----------GVYVTFEGAN-APKEPQRYDAVLVAAG  124 (125)
T ss_dssp             --------CHHHHHHHHHHHGGGEEE--EECSCEEEEEEEETT----------EEEEEEESSS-CCSSCEEESCEEECCC
T ss_pred             --------hhhHHHHHHHHHHHcCcc--cccCcEEEEEEEcCC----------cEEEEEEeCC-CCeEEEEcCEEEEecC
Confidence                    168889999999888887  999999999987764          3446655443 2223689999999999

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.22  E-value=4.7e-12  Score=100.50  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh--------hcc-CCCeEEcCceeEEecCC--c--
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV--------ISK-HNNLHLHPQIDCLREDG--R--  268 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~--------l~~-~~~i~~~~~v~~v~~~~--~--  268 (454)
                      ..++++|+|||||++|+|+|..+++.+.+|++++|++.+.+.+++.        +.+ ..++++++.++++..++  .  
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~   98 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQ   98 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEE
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEE
Confidence            3467999999999999999999999999999999999886655432        222 35888999999997543  2  


Q ss_pred             -EEE---eCCCEEeeceEEEccC
Q 044575          269 -VTF---VDGCWVTADTILYCTG  287 (454)
Q Consensus       269 -v~~---~dG~~i~~D~vI~atG  287 (454)
                       +..   .+++++++|.||+|+|
T Consensus        99 ~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          99 AVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEEeCCCCEEEEcCEEEEEEC
Confidence             211   2456799999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-11  Score=100.55  Aligned_cols=85  Identities=14%  Similarity=0.228  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhh----hcCeEEEecccCCcCcc-chh--------hhccC-CCeEEcCceeEEecCC--
Q 044575          204 RNEVVVVVGNSLSGQDISMELVE----VAKEVHLSAKSLNISEG-LSK--------VISKH-NNLHLHPQIDCLREDG--  267 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~----~~~~V~l~~r~~~~~~~-~~~--------~l~~~-~~i~~~~~v~~v~~~~--  267 (454)
                      .+++++|||||++|+|+|.+|++    .+.+|+++++.+.+.+. +++        .+.++ ++++.++.|+++..++  
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~  115 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK  115 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCE
Confidence            35899999999999999999974    57899999998876432 332        23333 5888999999997543  


Q ss_pred             -cEEEeCCCEEeeceEEEccCc
Q 044575          268 -RVTFVDGCWVTADTILYCTGY  288 (454)
Q Consensus       268 -~v~~~dG~~i~~D~vI~atG~  288 (454)
                       .|+++||+++++|.||+|||.
T Consensus       116 ~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         116 LLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             EEEEETTSCEEEESEEEECCCE
T ss_pred             EEEEECCCCEEECCEEEEeecC
Confidence             588899999999999999994

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=1.1e-12  Score=116.83  Aligned_cols=42  Identities=29%  Similarity=0.507  Sum_probs=38.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccC
Q 044575           13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~   54 (454)
                      ++|+|||||||||+||.+|++.  |++|+|||+.+.+||.+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~   45 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG   45 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhh
Confidence            5899999999999999999886  67999999999999988753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.20  E-value=1.3e-11  Score=97.97  Aligned_cols=105  Identities=17%  Similarity=0.231  Sum_probs=74.1

Q ss_pred             CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh--------hccC-
Q 044575          181 IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV--------ISKH-  251 (454)
Q Consensus       181 i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~--------l~~~-  251 (454)
                      +||++.-...++.+........ .+++++|||+|.+|+|+|..+++.|.+||+++|++++.+.++..        +.+. 
T Consensus         2 iPgi~~d~~~v~ts~~~l~l~~-~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~G   80 (123)
T d1dxla2           2 LPGVTIDEKKIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQG   80 (123)
T ss_dssp             BTTBCCCSSSEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSS
T ss_pred             CCCCcCCCCeEEeHHHhhCccc-cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhccc
Confidence            3455422223455554444333 35899999999999999999999999999999999886654433        3333 


Q ss_pred             CCeEEcCceeEEecCC---cEEEe---CCC--EEeeceEEEcc
Q 044575          252 NNLHLHPQIDCLREDG---RVTFV---DGC--WVTADTILYCT  286 (454)
Q Consensus       252 ~~i~~~~~v~~v~~~~---~v~~~---dG~--~i~~D~vI~at  286 (454)
                      .++++++.+++++.++   .|.+.   +|+  +++||.|++|.
T Consensus        81 I~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          81 MKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            5899999999997443   33442   333  47899999873

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1e-10  Score=94.55  Aligned_cols=96  Identities=26%  Similarity=0.322  Sum_probs=77.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHH----cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRK----EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~----~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      .++++|||||+.|+.+|..|.+    .|.+|+++++++.+..                                      
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~--------------------------------------   78 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG--------------------------------------   78 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc--------------------------------------
Confidence            5789999999999999988853    5899999999774310                                      


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                             ..|  .+++.+++.+..++.|+.  +++++.|.+|+..+.          ...|++.+++     ++.+|.||
T Consensus        79 -------~~~--~~~~~~~~~~~l~~~GV~--~~~~~~V~~i~~~~~----------~~~v~l~~G~-----~i~aD~Vi  132 (137)
T d1m6ia2          79 -------KIL--PEYLSNWTMEKVRREGVK--VMPNAIVQSVGVSSG----------KLLIKLKDGR-----KVETDHIV  132 (137)
T ss_dssp             -------TTS--CHHHHHHHHHHHHTTTCE--EECSCCEEEEEEETT----------EEEEEETTSC-----EEEESEEE
T ss_pred             -------ccC--CHHHHHHHHHHHHhCCcE--EEeCCEEEEEEecCC----------EEEEEECCCC-----EEECCEEE
Confidence                   001  157888899999988988  999999999987643          5678887765     89999999


Q ss_pred             EccC
Q 044575          168 VATG  171 (454)
Q Consensus       168 iAtG  171 (454)
                      +|+|
T Consensus       133 ~A~G  136 (137)
T d1m6ia2         133 AAVG  136 (137)
T ss_dssp             ECCC
T ss_pred             Eeec
Confidence            9999

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=7e-11  Score=102.92  Aligned_cols=34  Identities=38%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .|||+||||||||+.||.++++.|.+++||+++-
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            5899999999999999999999999999999863

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=3.4e-11  Score=102.83  Aligned_cols=112  Identities=20%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR   92 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (454)
                      |||+||||||+|++||..+++.|.+|+|||++  +||.+......                     ..+.+++       
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~~~---------------------~~~~~~~-------   51 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDI---------------------ENYISVP-------   51 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEE---------------------CCBTTBS-------
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccccc---------------------eeccccc-------
Confidence            79999999999999999999999999999974  67776632110                     0011111       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575           93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus        93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                          ......+...++..++++...  ......+..+.......      . .+.....+..     ++.++.+++++|.
T Consensus        52 ----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~-----~~~~~~~~~~~g~  113 (184)
T d1fl2a1          52 ----KTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEG------G-LHQIETASGA-----VLKARSIIVATGA  113 (184)
T ss_dssp             ----SEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTT------C-CEEEEETTSC-----EEEEEEEEECCCE
T ss_pred             ----hhhhHHHHHHHHHHhhheece--eeccceeeeeccccccc------c-eeeeeeecce-----eeecccccccccc
Confidence                123456667777777777654  45555666666543321      0 2333333322     6789999999994

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=9.1e-11  Score=100.77  Aligned_cols=110  Identities=18%  Similarity=0.273  Sum_probs=78.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +.+||+||||||+|+.||.+|++.|.+|+|||+.. .||.+......                     ..+.        
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~-~~g~~~~~~~i---------------------~~~~--------   53 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEV---------------------ENWP--------   53 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBC---------------------CCST--------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec-ccccccccchh---------------------hhhh--------
Confidence            45799999999999999999999999999999864 45555432110                     0000        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                        ..+......++.+.+...+.++++.  +. ..+|+.++..+.          .+.++....      .+.++.+|+|+
T Consensus        54 --~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~V~~~~~~~~----------~~~v~~~~~------~~~~~~viva~  112 (190)
T d1trba1          54 --GDPNDLTGPLLMERMHEHATKFETE--II-FDHINKVDLQNR----------PFRLNGDNG------EYTCDALIIAT  112 (190)
T ss_dssp             --TCCSSCBHHHHHHHHHHHHHHTTCE--EE-CCCEEEEECSSS----------SEEEEESSC------EEEEEEEEECC
T ss_pred             --ccccccchHHHHHHHHHHHHhcCcE--Ee-cceeEEEecCCC----------cEEEEEeee------eEeeeeeeeec
Confidence              1223345678888888888888876  44 446888776543          566665433      67899999999


Q ss_pred             C
Q 044575          171 G  171 (454)
Q Consensus       171 G  171 (454)
                      |
T Consensus       113 G  113 (190)
T d1trba1         113 G  113 (190)
T ss_dssp             C
T ss_pred             c
Confidence            9

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.14  E-value=4.1e-10  Score=104.29  Aligned_cols=153  Identities=21%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCC-C---CCC------Ccccc-----------cc--
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN-T---DQT------EVHSS-----------VY--   67 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~-~---~~~------~~~~~-----------~~--   67 (454)
                      +.+||||||||++|++||.+|++.|.+|+||||.+..||.-..... .   ...      ...+.           .+  
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            3589999999999999999999999999999999887764322110 0   000      00000           00  


Q ss_pred             -----ccceecCCcccccc--CCCCCCCCC---CC--C-----CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEE
Q 044575           68 -----ASLRLTSPREIMGY--TDFPFVLKK---GR--D-----VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG  130 (454)
Q Consensus        68 -----~~~~~~~~~~~~~~--~~~~~~~~~---~~--~-----~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~  130 (454)
                           ..+..+.+..+-.+  .+.++....   +.  .     .........+...+.+.+.+.++.  ++++++|+++.
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~~~v~~li  172 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVL  172 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEE
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccce--EEEeeccchhh
Confidence                 00000000000000  011111000   00  0     001112345677777778888887  99999999987


Q ss_pred             EcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ..+++.        -.-|.+.+.. +....+.++.||+|||.++
T Consensus       173 ~~~~G~--------V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         173 KDDKGT--------VKGILVKGMY-KGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             ECTTSC--------EEEEEEEETT-TEEEEEECSEEEECCCCCT
T ss_pred             hhcccc--------cccccccccc-cceeEeecCeEEEccCccc
Confidence            765431        2235555543 3456789999999999544

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.13  E-value=3.8e-10  Score=88.45  Aligned_cols=95  Identities=20%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      .++++|||||+.|+.+|..+.+.   +.+|+++|+.+.+-                                        
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL----------------------------------------   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL----------------------------------------   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh----------------------------------------
Confidence            47899999999999999877665   45799999976431                                        


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV  168 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi  168 (454)
                            +.|  ..++.+++.+..++.|+.  ++++++|++|+...++         ...+++.++.     ++.+|.||+
T Consensus        60 ------~~~--d~~~~~~l~~~l~~~GV~--v~~~~~v~~ie~~~~~---------~~~v~~~~G~-----~i~~D~Vi~  115 (117)
T d1aoga2          60 ------RGF--DHTLREELTKQLTANGIQ--ILTKENPAKVELNADG---------SKSVTFESGK-----KMDFDLVMM  115 (117)
T ss_dssp             ------TTS--CHHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTS---------CEEEEETTSC-----EEEESEEEE
T ss_pred             ------ccc--chHHHHHHHHHHHhcCcE--EEcCCEEEEEEEcCCC---------eEEEEECCCc-----EEEeCEEEE
Confidence                  011  168889999999999998  9999999999876554         6778888765     789999999


Q ss_pred             cc
Q 044575          169 AT  170 (454)
Q Consensus       169 At  170 (454)
                      |.
T Consensus       116 AI  117 (117)
T d1aoga2         116 AI  117 (117)
T ss_dssp             CS
T ss_pred             eC
Confidence            83

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.13  E-value=3.3e-11  Score=100.12  Aligned_cols=125  Identities=11%  Similarity=-0.016  Sum_probs=93.5

Q ss_pred             ccCCCCCCCCC-CCCCcCCccceeEEeecCCCCCCCCCCeEEEE--cCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575          169 ATGHYSYPRLP-SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVV--GNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS  245 (454)
Q Consensus       169 AtG~~~~p~~p-~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVV--G~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~  245 (454)
                      |||  +.|..| ++||++.-...++.+.+........+++++|+  |||.+|+|+|..|++.|++||++++.+.+.+.+.
T Consensus         4 atG--~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~   81 (156)
T d1djqa2           4 TDG--TNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF   81 (156)
T ss_dssp             SSC--CCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH
T ss_pred             CCC--CCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc
Confidence            899  888887 79999764445566655544445567788887  9999999999999999999999999887744332


Q ss_pred             --------hhh-ccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCC
Q 044575          246 --------KVI-SKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       246 --------~~l-~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~  296 (454)
                              +.+ ...++++.+..+.++..+ .+.+.+....+.+.++.++|..|+....+
T Consensus        82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~v~l~~~~~~~~~~v~~~~g~~~~~~~~~  140 (156)
T d1djqa2          82 TLEYPNMMRRLHELHVEELGDHFCSRIEPG-RMEIYNIWGDGSKRTYRGPGVSPRDANTS  140 (156)
T ss_dssp             TTCHHHHHHHHHHTTCEEEETEEEEEEETT-EEEEEETTCSCSCCCCCCTTSCSSCCCCC
T ss_pred             hhHHHHHHHHHhhccceEEeccEEEEecCc-ceEEEeeeccccceeeeeeEEEecccCCc
Confidence                    222 334588999999999766 47777766666777778888877766544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.11  E-value=2.4e-10  Score=90.41  Aligned_cols=94  Identities=29%  Similarity=0.243  Sum_probs=73.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+-+.                                         
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~-----------------------------------------   68 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-----------------------------------------   68 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc-----------------------------------------
Confidence            578999999999999999999999999999998643100                                         


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                           + -..++.++++++.+..++.  ++++++|.+++..+.          ...+ ..++.     ++.+|.||+|.
T Consensus        69 -----~-~d~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~----------~~~v-~~dg~-----~i~~D~vi~aI  123 (123)
T d1nhpa2          69 -----Y-LDKEFTDVLTEEMEANNIT--IATGETVERYEGDGR----------VQKV-VTDKN-----AYDADLVVVAV  123 (123)
T ss_dssp             -----T-CCHHHHHHHHHHHHTTTEE--EEESCCEEEEECSSB----------CCEE-EESSC-----EEECSEEEECS
T ss_pred             -----c-cchhhHHHHHHHhhcCCeE--EEeCceEEEEEcCCC----------EEEE-EeCCC-----EEECCEEEEEC
Confidence                 0 0167888889988888888  999999999985421          2233 45554     78999999983

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.7e-11  Score=100.47  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=74.5

Q ss_pred             CCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc-------------------
Q 044575          176 PRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK-------------------  236 (454)
Q Consensus       176 p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r-------------------  236 (454)
                      |+.|+|||.+..  .++++.++.......||+|+|||||++|+|+|..+++.|.+++...+                   
T Consensus         2 Pr~p~IpG~d~~--~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (162)
T d1ps9a2           2 PRTPPIDGIDHP--KVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLS   79 (162)
T ss_dssp             ECCCCCBTTTST--TEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBC
T ss_pred             CCCCCCCCCCCC--CeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccc
Confidence            788999998753  36777776555566889999999999999999999998865332211                   


Q ss_pred             ------------------c-CCcCccc--------hhhhc-cCCCeEEcCceeEEecCCcEEEeCCCE--EeeceEEEcc
Q 044575          237 ------------------S-LNISEGL--------SKVIS-KHNNLHLHPQIDCLREDGRVTFVDGCW--VTADTILYCT  286 (454)
Q Consensus       237 ------------------~-~~~~~~~--------~~~l~-~~~~i~~~~~v~~v~~~~~v~~~dG~~--i~~D~vI~at  286 (454)
                                        . ......+        ...+. ..+.+..+..+.++++++...-.+|++  ++||.||+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~  159 (162)
T d1ps9a2          80 PQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICA  159 (162)
T ss_dssp             TTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECC
T ss_pred             cccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECC
Confidence                              1 0000000        00011 123566778888998776333345654  7899999999


Q ss_pred             Cc
Q 044575          287 GY  288 (454)
Q Consensus       287 G~  288 (454)
                      |.
T Consensus       160 Gq  161 (162)
T d1ps9a2         160 GQ  161 (162)
T ss_dssp             CE
T ss_pred             CC
Confidence            95

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.11  E-value=1.3e-10  Score=91.93  Aligned_cols=89  Identities=21%  Similarity=0.209  Sum_probs=71.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.                                    +      
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~------------------------------------~------   69 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------------------------------------G------   69 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------------------------------------T------
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccccc------------------------------------C------
Confidence            4789999999999999999999999999999976431                                    0      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                           +  ..++.+++.+..++.++.  ++++++|.+++..            .  + +.+++     .+.+|.||+|+|
T Consensus        70 -----~--d~~~~~~~~~~l~~~GV~--~~~~~~v~~~~~~------------~--v-~~~~~-----~i~~D~vi~a~G  120 (122)
T d1xhca2          70 -----L--DEELSNMIKDMLEETGVK--FFLNSELLEANEE------------G--V-LTNSG-----FIEGKVKICAIG  120 (122)
T ss_dssp             -----C--CHHHHHHHHHHHHHTTEE--EECSCCEEEECSS------------E--E-EETTE-----EEECSCEEEECC
T ss_pred             -----C--CHHHHHHHHHHHHHCCcE--EEeCCEEEEEeCC------------E--E-EeCCC-----EEECCEEEEEEE
Confidence                 0  167888888888888988  8999999887532            1  2 23333     789999999999

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.10  E-value=1.6e-10  Score=106.68  Aligned_cols=38  Identities=45%  Similarity=0.719  Sum_probs=36.4

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW   51 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w   51 (454)
                      ||+|||||++||+||..|++.|++|+|||+++.+||..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence            79999999999999999999999999999999999954

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.10  E-value=1.4e-10  Score=105.99  Aligned_cols=142  Identities=19%  Similarity=0.112  Sum_probs=81.4

Q ss_pred             CCCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCCCCCcccccCCCCCCCC-ccccccccceecCCccccccCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSSVYASLRLTSPREIMGYTDFPFVL   88 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (454)
                      ..+||+|||||||||+||.+|++ .|++|+|||+++.+||.|.+..+..++. ........+        .. .+.++..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~--------~~-~g~~~~~  102 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFL--------DE-IGVAYDE  102 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHH--------HH-HTCCCEE
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHH--------HH-cCCceec
Confidence            36899999999999999999987 5999999999999999998766544331 111100000        00 0111111


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee--------cCCCeEEE
Q 044575           89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE--------KKADKVVE  160 (454)
Q Consensus        89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~  160 (454)
                      .. ...........+..++..++...+..  +..++.+..+...+...        ...+....        .......+
T Consensus       103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v--------~gv~~~~~~~~~~~~~~~~~~~~~  171 (278)
T d1rp0a1         103 QD-TYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNRV--------GGVVTNWALVAQNHHTQSCMDPNV  171 (278)
T ss_dssp             CS-SEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEETTEE--------EEEEEEEHHHHTCTTTSSCCCCEE
T ss_pred             CC-ccceecccHHHHHHHHHHHHHhCCCE--EEeCCcceeeeecCCeE--------EEEEeccceeeeeeccccccccee
Confidence            00 01112234455556666666544443  67777777766553320        11111100        00112346


Q ss_pred             EEeCEEEEccCC
Q 044575          161 EVFDAVVVATGH  172 (454)
Q Consensus       161 ~~~d~vViAtG~  172 (454)
                      +.++++|+|+|+
T Consensus       172 ~~a~~vv~a~G~  183 (278)
T d1rp0a1         172 MEAKIVVSSCGH  183 (278)
T ss_dssp             EEEEEEEECCCS
T ss_pred             eccceEEECcCC
Confidence            889999999995

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=1.8e-10  Score=99.06  Aligned_cols=110  Identities=22%  Similarity=0.253  Sum_probs=76.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV   87 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      ++||+||||||+|++||.+|++.|.+++|+|+....    |+.....              ....+       +.     
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~--------------~~~~~-------~~-----   58 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTT--------------TDVEN-------FP-----   58 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGC--------------SEECC-------ST-----
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccc--------------hhhhc-------cc-----
Confidence            589999999999999999999999999999986532    1111100              00000       00     


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575           88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV  167 (454)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV  167 (454)
                           ..+......++...+.+.+.+|+..  +.+. +|.+++....          .+.+.+...      ...+|.++
T Consensus        59 -----~~~~~~~~~el~~~~~~q~~~~g~~--i~~~-~V~~~~~~~~----------~~~v~~~~~------~~~~~~~~  114 (192)
T d1vdca1          59 -----GFPEGILGVELTDKFRKQSERFGTT--IFTE-TVTKVDFSSK----------PFKLFTDSK------AILADAVI  114 (192)
T ss_dssp             -----TCTTCEEHHHHHHHHHHHHHHTTCE--EECC-CCCEEECSSS----------SEEEECSSE------EEEEEEEE
T ss_pred             -----cccccccchHHHHHHHHHHHhhcce--eeee-eEEecccccC----------cEEecccce------eeeeeeEE
Confidence                 2223345688988888889999986  5544 6778776543          456654432      67899999


Q ss_pred             EccC
Q 044575          168 VATG  171 (454)
Q Consensus       168 iAtG  171 (454)
                      +|+|
T Consensus       115 ~a~g  118 (192)
T d1vdca1         115 LAIG  118 (192)
T ss_dssp             ECCC
T ss_pred             EEee
Confidence            9999

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.08  E-value=1.1e-09  Score=102.09  Aligned_cols=152  Identities=24%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCC---C-CC------Cccc--cccc-----------
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNT---D-QT------EVHS--SVYA-----------   68 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~---~-~~------~~~~--~~~~-----------   68 (454)
                      ..||+|||||++|++||..|++.|.+|+|+||.+..||.-.+....   + ..      ...+  ..+.           
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d  102 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  102 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence            5799999999999999999999999999999998887753322110   0 00      0000  0000           


Q ss_pred             -----cceecCCccc--cccCCCCCCCC---CCC-------CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575           69 -----SLRLTSPREI--MGYTDFPFVLK---KGR-------DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM  131 (454)
Q Consensus        69 -----~~~~~~~~~~--~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~  131 (454)
                           .+..+.+..+  +.-.+.++...   .+.       ....-.....+...+.+.+.+.++.  |+++++|+++..
T Consensus       103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~t~v~~li~  180 (322)
T d1d4ca2         103 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILE  180 (322)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCE--EETTEEEEEEEC
T ss_pred             HHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCce--EEEeeecccccc
Confidence                 0000000000  00001111110   000       0111124567888888888888887  999999999876


Q ss_pred             cCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      .+++.        ---|...+.. +....+.++.||||||.++
T Consensus       181 d~~G~--------V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~  214 (322)
T d1d4ca2         181 DASGK--------VTGVLVKGEY-TGYYVIKADAVVIAAGGFA  214 (322)
T ss_dssp             CSSSC--------CCEEEEEETT-TEEEEEECSEEEECCCCCT
T ss_pred             ccccc--------ccceEEEeec-ccEEEEeCCeEEEcCCCcc
Confidence            54321        1124444433 3345789999999999544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.05  E-value=4.5e-10  Score=96.96  Aligned_cols=114  Identities=16%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG   91 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (454)
                      +|+|||||++|+.+|..|++.  +.+|+++|+++.+.    +.++            .+........             
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~----~~~~------------~~~~~l~~~~-------------   52 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS----FLSA------------GMQLYLEGKV-------------   52 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS----BCGG------------GHHHHHTTSS-------------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc----cccc------------Ccchhhcccc-------------
Confidence            699999999999999999987  45899999977541    0000            0000000000             


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575           92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG  171 (454)
Q Consensus        92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG  171 (454)
                            ...+++..+..+..++.++.  ++++++|.+|+..+            -.|++.+..++....+.||+||+|+|
T Consensus        53 ------~~~~~~~~~~~~~l~~~gi~--v~~~~~V~~i~~~~------------~~v~~~~~~~g~~~~~~~D~li~a~G  112 (198)
T d1nhpa1          53 ------KDVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE------------HQVTVKDLVSGEERVENYDKLIISPG  112 (198)
T ss_dssp             ------CCGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT------------TEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ------cchHHHHHhhHHHHHHCCcE--EEEeeceeeEeecc------------ccceeeecccccccccccceeeEeec
Confidence                  00011111123344556777  89999999998653            23666555556677889999999999


Q ss_pred             CCCCCCC
Q 044575          172 HYSYPRL  178 (454)
Q Consensus       172 ~~~~p~~  178 (454)
                        +.|+.
T Consensus       113 --~~~~~  117 (198)
T d1nhpa1         113 --AVPFE  117 (198)
T ss_dssp             --EEECC
T ss_pred             --ceeec
Confidence              66553

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.04  E-value=1.2e-10  Score=92.68  Aligned_cols=107  Identities=12%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             CCCCcCC----ccceeEEeecCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhhhccC
Q 044575          180 SIKGMDK----WKRKQMHSHIYRVP--EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKVISKH  251 (454)
Q Consensus       180 ~i~G~~~----~~~~~~~~~~~~~~--~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~l~~~  251 (454)
                      .+||..+    |.++.++.+..++.  ..|+||+|+|||+|.+|+|-|..|++.+++||+++|++.+.  +.+.+.+.+.
T Consensus         3 ~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~   82 (130)
T d1vdca2           3 SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSN   82 (130)
T ss_dssp             CCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTC
T ss_pred             CCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccC
Confidence            4667655    78889999888775  47999999999999999999999999999999999998873  3333444444


Q ss_pred             C--CeEEcCceeEEecCC------cEEEe---CCC--EEeeceEEEcc
Q 044575          252 N--NLHLHPQIDCLREDG------RVTFV---DGC--WVTADTILYCT  286 (454)
Q Consensus       252 ~--~i~~~~~v~~v~~~~------~v~~~---dG~--~i~~D~vI~at  286 (454)
                      .  .++.++.+.++..++      .+.+.   +|+  ++++|-|+++.
T Consensus        83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            4  567778888887653      24443   344  57899998763

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.04  E-value=1.6e-09  Score=100.63  Aligned_cols=153  Identities=20%  Similarity=0.218  Sum_probs=88.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCC----CCC---------CCcc--------c-----
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPN----TDQ---------TEVH--------S-----   64 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~----~~~---------~~~~--------~-----   64 (454)
                      +..||||||||++|++||.+|++.|.+|+|+||.+..||.-.+...    ..+         +...        .     
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~   97 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN   97 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhcccc
Confidence            4689999999999999999999999999999999877764222110    000         0000        0     


Q ss_pred             --cccccceecCCccc--cccCCCCCCCC--C-CCC-------CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEE
Q 044575           65 --SVYASLRLTSPREI--MGYTDFPFVLK--K-GRD-------VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG  130 (454)
Q Consensus        65 --~~~~~~~~~~~~~~--~~~~~~~~~~~--~-~~~-------~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~  130 (454)
                        .....+..+.+..+  +.-.+.++...  . +..       ........++...|.+.+++.+..  ++++++|+++.
T Consensus        98 d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~--i~~~~~v~~l~  175 (317)
T d1qo8a2          98 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLV  175 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEE
T ss_pred             chhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccce--eeeccchhhee
Confidence              00000000000000  00001111110  0 000       011123567888899999999988  99999999987


Q ss_pred             EcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575          131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ..+++.        -.-|...+.+ +....+.++.||+|||.++
T Consensus       176 ~~~~g~--------V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         176 VNDDHS--------VVGAVVHGKH-TGYYMIGAKSVVLATGGYG  210 (317)
T ss_dssp             ECTTSB--------EEEEEEEETT-TEEEEEEEEEEEECCCCCT
T ss_pred             eccccc--------ceeeEeeccc-ceEEEEeccceEEeccccc
Confidence            655431        2224444433 4456789999999999544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-10  Score=110.32  Aligned_cols=39  Identities=46%  Similarity=0.705  Sum_probs=37.0

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~   39 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY   39 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence            799999999999999999999999999999999999653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.03  E-value=5.5e-10  Score=103.23  Aligned_cols=59  Identities=17%  Similarity=0.059  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575           99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus        99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~  174 (454)
                      ....+...+.+.+++.++.  +.++++|+++...++.         -+.|.+.++      ++++|+||+|+|.++
T Consensus       146 ~p~~l~~~l~~~a~~~gv~--i~~~~~V~~i~~~~~~---------v~~V~T~~g------~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         146 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGR---------VTGVQTADG------VIPADIVVSCAGFWG  204 (305)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTE---------EEEEEETTE------EEECSEEEECCGGGH
T ss_pred             chhhhhhhHHhhhhccccc--ccCCceEEEEEEeCCE---------EEEEeccce------eEECCEEEEecchhH
Confidence            4567777777778888888  9999999999987642         344665433      689999999999654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.3e-10  Score=104.11  Aligned_cols=44  Identities=20%  Similarity=0.400  Sum_probs=41.7

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      |++.+||||||||++|++||..|++.|++|+|||+++.+||.+.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence            66789999999999999999999999999999999999999874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.99  E-value=6.5e-10  Score=101.21  Aligned_cols=146  Identities=18%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccCCCCCCC-----------Cc--cccccccceecCC--c
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYDPNTDQT-----------EV--HSSVYASLRLTSP--R   76 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~~~~~~~-----------~~--~~~~~~~~~~~~~--~   76 (454)
                      .||+|||||||||++|..|++.|. +|+|+|+++.++..+.-....+..           .+  .............  .
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            589999999999999999999996 899999998765432211000000           00  0000000000000  0


Q ss_pred             cccccCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHH--HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575           77 EIMGYTDFPFVLKKGRDVRRF-PGHKELWLYLKDFC--QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK  153 (454)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~--~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~  153 (454)
                      ....+.......   .....+ .........+....  ...+..  +.++++|+.+...++          ...|+..++
T Consensus        82 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----------~v~v~~~~g  146 (288)
T d3c96a1          82 TVWSEPRGVEAG---NAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEERDG----------RVLIGARDG  146 (288)
T ss_dssp             EEEEEECGGGGT---CSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEEETT----------EEEEEEEET
T ss_pred             EEEecccccccc---ccCcccccchhhhHHHHHHHHHHhccCee--eecCcEEEEeeecCC----------cEEEEEEcC
Confidence            000000000000   011111 12222222222222  223444  889999998887654          677888776


Q ss_pred             CCCeEEEEEeCEEEEccCCCC
Q 044575          154 KADKVVEEVFDAVVVATGHYS  174 (454)
Q Consensus       154 ~~~~~~~~~~d~vViAtG~~~  174 (454)
                      . +...++.+|+||-|.|.+|
T Consensus       147 ~-~~~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         147 H-GKPQALGADVLVGADGIHS  166 (288)
T ss_dssp             T-SCEEEEEESEEEECCCTTC
T ss_pred             C-CCeEEEeeceeeccCCccc
Confidence            4 4456889999999999544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.5e-12  Score=109.76  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDV   47 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~   47 (454)
                      +++++||||||++|+.+|..|++.+.  +|++|++++.+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            45789999999999999999999875  69999987643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=2.5e-10  Score=90.07  Aligned_cols=83  Identities=18%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh--------ccC-CCeEEcCceeEEec--C---C--
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI--------SKH-NNLHLHPQIDCLRE--D---G--  267 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l--------~~~-~~i~~~~~v~~v~~--~---~--  267 (454)
                      .+++++|||+|++|+|+|..+++.|.+||++.|+ ++.+.+++.+        .+. ++++.++.|+++..  +   +  
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~   97 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRL   97 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEE
Confidence            3479999999999999999999999999999976 4545444332        222 57888988888752  1   1  


Q ss_pred             cEEEeCC---C--EEeeceEEEccC
Q 044575          268 RVTFVDG---C--WVTADTILYCTG  287 (454)
Q Consensus       268 ~v~~~dG---~--~i~~D~vI~atG  287 (454)
                      .+.+.++   +  .+++|.|++|+|
T Consensus        98 ~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          98 KVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEECCCCcEEEEECCEEEEEeC
Confidence            3444432   2  356999999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.97  E-value=7.3e-09  Score=96.81  Aligned_cols=62  Identities=13%  Similarity=0.192  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575          100 HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH  172 (454)
Q Consensus       100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~  172 (454)
                      +..+...+.+.+++.++.  ++.++.+.++...++.         ..-+...+..+++...+.++.||||||.
T Consensus       157 G~~i~~~l~~~~~~~gv~--i~~~~~~~~li~~~~~---------v~g~~~~~~~~g~~~~i~Ak~VvlATGG  218 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQDGK---------CYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTE---------EEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHHhcccc--ccceeeeeeccccccc---------ccceeEEeccCCcEEEEecCeEEEeccc
Confidence            456777778888888888  8999999988766543         3445555555566778899999999994

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.96  E-value=4.4e-10  Score=103.18  Aligned_cols=150  Identities=18%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc-cCCCCCCC---Ccc-cccccccee-cCCccccccCCC--
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL-YDPNTDQT---EVH-SSVYASLRL-TSPREIMGYTDF--   84 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~-~~~~~~~~---~~~-~~~~~~~~~-~~~~~~~~~~~~--   84 (454)
                      .+|+||||||+|+++|..|++.|++|+||||++..+..-. ........   .+. -..+..+.. ..+...+.+.+-  
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            5899999999999999999999999999999864321000 00000000   000 000000000 000000000000  


Q ss_pred             ----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575           85 ----PFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE  160 (454)
Q Consensus        85 ----~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (454)
                          ...............+..+.+.+.+.++..+..  +.++..+..+...+..         ...|+..++  ++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~v~~~~~--g~~~~  149 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGE---------RPYVTFERD--GERLR  149 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSS---------SCEEEEEET--TEEEE
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCc--EEEcceeeeeeeeccC---------ceEEEEecC--CcEEE
Confidence                000000001122345677888888888877755  6666666555544433         556666554  34557


Q ss_pred             EEeCEEEEccCCCCC
Q 044575          161 EVFDAVVVATGHYSY  175 (454)
Q Consensus       161 ~~~d~vViAtG~~~~  175 (454)
                      +.+|+||.|.|.+|.
T Consensus       150 i~a~~vVgADG~~S~  164 (292)
T d1k0ia1         150 LDCDYIAGCDGFHGI  164 (292)
T ss_dssp             EECSEEEECCCTTCS
T ss_pred             EEeCEEEECCCCCCc
Confidence            899999999996553

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.90  E-value=1.8e-09  Score=99.18  Aligned_cols=146  Identities=18%  Similarity=0.259  Sum_probs=96.4

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--------c---------------------------------
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--------G---------------------------------  243 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--------~---------------------------------  243 (454)
                      .-+|+|||+|++|+-+|..|.+.|.+|+++++.+.+..        +                                 
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e   86 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   86 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence            35799999999999999999999999999998765400        0                                 


Q ss_pred             chhh----hccC---CCeEEcCceeEEe--cC-C--cEEEeCCCEEeeceEEEccCcc--cCCcCC---C---CCCceee
Q 044575          244 LSKV----ISKH---NNLHLHPQIDCLR--ED-G--RVTFVDGCWVTADTILYCTGYS--YSFPFL---D---TKGIVVV  303 (454)
Q Consensus       244 ~~~~----l~~~---~~i~~~~~v~~v~--~~-~--~v~~~dG~~i~~D~vI~atG~~--~~~~~l---~---~~g~i~v  303 (454)
                      +.+.    ..+.   ..+..+++|+++.  ++ +  .|.+.++.+.++|.||.|||+.  |..|.+   +   .+|...-
T Consensus        87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l~  166 (298)
T d1w4xa1          87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVALK  166 (298)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBHH
T ss_pred             HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccccccCCCeeeh
Confidence            0000    0111   1478889999885  32 2  6888899999999999999975  333222   2   1111111


Q ss_pred             CCCC-cccccCcccCCCCCCCceEeccccccc---c-hhHHHHHHHHHHHHHc
Q 044575          304 DDDR-VGPLYEHTFPPSLAPSLSFVGIPRKLI---G-FPFFESQAKWIAQLLS  351 (454)
Q Consensus       304 ~~~~-~~~~~~~~~~~~~~p~l~~iG~~~~~~---~-~~~a~~qa~~~a~~i~  351 (454)
                      +... ....|..+..+ +.||+|+++-|.++.   . ...+|.|++++++.|.
T Consensus       167 ~~W~~~p~ty~G~~v~-gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~  218 (298)
T d1w4xa1         167 EKWAAGPRTYLGLSTA-GFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA  218 (298)
T ss_dssp             HHTTTSCCCBTTTBCT-TSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             hhchhhHHHHHHHhcC-CCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHH
Confidence            1111 11245555554 579999997776431   2 3578999999998763

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=5.2e-09  Score=89.64  Aligned_cols=134  Identities=14%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-------------------------chhh----hccCCCeE
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-------------------------LSKV----ISKHNNLH  255 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-------------------------~~~~----l~~~~~i~  255 (454)
                      .++|+|||||++|++.|..+++.|.+|.++++.......                         +...    ..+.+--+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            378999999999999999999999999999865543100                         0000    01112112


Q ss_pred             EcCceeEEecCC--cEEEeCCCEEeeceEEEccCcc-----cCCcCCC------CCCceeeCCCCcccccCcccCCCCCC
Q 044575          256 LHPQIDCLREDG--RVTFVDGCWVTADTILYCTGYS-----YSFPFLD------TKGIVVVDDDRVGPLYEHTFPPSLAP  322 (454)
Q Consensus       256 ~~~~v~~v~~~~--~v~~~dG~~i~~D~vI~atG~~-----~~~~~l~------~~g~i~v~~~~~~~~~~~~~~~~~~p  322 (454)
                      ....|.++...+  .....+.....+|.+++++|..     |+..++.      ++|.+.+++..        .. ++.|
T Consensus        85 ~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~--------~~-Ts~~  155 (192)
T d1vdca1          85 FTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGT--------TQ-TSVP  155 (192)
T ss_dssp             ECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTS--------CB-CSST
T ss_pred             eeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCc--------eE-ecCC
Confidence            234566665333  2334455577899999999864     6666543      34444444321        11 4579


Q ss_pred             CceEecccccccc--hhHHHHHHHHHH
Q 044575          323 SLSFVGIPRKLIG--FPFFESQAKWIA  347 (454)
Q Consensus       323 ~l~~iG~~~~~~~--~~~a~~qa~~~a  347 (454)
                      ++|++||+...+.  ...|.-++..+|
T Consensus       156 GV~a~GDv~~~~~r~~v~A~g~G~~aA  182 (192)
T d1vdca1         156 GVFAAGDVQDKKYRQAITAAGTGCMAA  182 (192)
T ss_dssp             TEEECGGGGCSSCCCHHHHHHHHHHHH
T ss_pred             CEEEeeecCCcccceEEEEEechHHHH
Confidence            9999999985432  234444555444

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=5.6e-09  Score=89.24  Aligned_cols=125  Identities=13%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-----------c---------hh----hhccCCCeEEcCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-----------L---------SK----VISKHNNLHLHPQ  259 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-----------~---------~~----~l~~~~~i~~~~~  259 (454)
                      ++++|+|||||++|++.|..+++.+.+|+++++.......           +         .+    ...+.........
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecce
Confidence            4578999999999999999999999999999876542100           0         00    0111122233445


Q ss_pred             eeEEecCC--cEEEeCCCEEeeceEEEccCcccC-----CcCCC-----CCCceeeCCCCcccccCcccCCCCCCCceEe
Q 044575          260 IDCLREDG--RVTFVDGCWVTADTILYCTGYSYS-----FPFLD-----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFV  327 (454)
Q Consensus       260 v~~v~~~~--~v~~~dG~~i~~D~vI~atG~~~~-----~~~l~-----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~i  327 (454)
                      |+.+...+  .+.......++++.++++||..+.     ..++.     ++|.+.++.....    ..+. ++.|++|+.
T Consensus        84 V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~----~~~~-T~v~gV~aa  158 (190)
T d1trba1          84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHG----NATQ-TSIPGVFAA  158 (190)
T ss_dssp             EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSS----CTTB-CSSTTEEEC
T ss_pred             eEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcc----cccc-cccCeEEEe
Confidence            66665333  233345567889999999997654     33333     2355555543221    1112 457999999


Q ss_pred             cccccc
Q 044575          328 GIPRKL  333 (454)
Q Consensus       328 G~~~~~  333 (454)
                      |++...
T Consensus       159 GDv~~~  164 (190)
T d1trba1         159 GDVMDH  164 (190)
T ss_dssp             GGGGCS
T ss_pred             EEecCc
Confidence            998753

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.87  E-value=1.1e-10  Score=98.01  Aligned_cols=154  Identities=19%  Similarity=0.306  Sum_probs=84.6

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRD   93 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (454)
                      +|+|||||++|+.+|..|++ +.+|+|+++++.+..    ..             ..   .+..+.              
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~----~~-------------~~---~~~~~~--------------   46 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY----SK-------------PM---LSHYIA--------------   46 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC----CS-------------TT---HHHHHT--------------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc----cc-------------cc---hhhhhh--------------
Confidence            79999999999999999975 679999998764310    00             00   000000              


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCC
Q 044575           94 VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY  173 (454)
Q Consensus        94 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~  173 (454)
                        .....+.+..+..++..+.++.  +++++.|..++...            . +...++.     ++.||.||+|+|  
T Consensus        47 --~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~------------~-~~~~~~~-----~i~~D~li~a~G--  102 (167)
T d1xhca1          47 --GFIPRNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRGR------------K-VVITEKG-----EVPYDTLVLATG--  102 (167)
T ss_dssp             --TSSCGGGGCSSCHHHHHHHTEE--EECSCCEEEEETTT------------T-EEEESSC-----EEECSEEEECCC--
T ss_pred             --hhhhhhhhhHHHHHHHHhccce--eeeecccccccccc------------c-ccccccc-----ccccceeEEEEE--
Confidence              0000111222223445555666  78888998886432            1 3344443     789999999999  


Q ss_pred             CCCCCC-CCCCcCCccceeEEeecCCC--CCCC-----CCCeEEEEcCCCCHHHHHHHHhhh
Q 044575          174 SYPRLP-SIKGMDKWKRKQMHSHIYRV--PEPF-----RNEVVVVVGNSLSGQDISMELVEV  227 (454)
Q Consensus       174 ~~p~~p-~i~G~~~~~~~~~~~~~~~~--~~~~-----~~k~vvVVG~G~sg~e~A~~l~~~  227 (454)
                      ..|..+ .-.|++.-.+ +.....++.  +.-|     ...+.+++|++..|++.|..+++.
T Consensus       103 ~~~~~~~~~~gl~~~~~-i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~  163 (167)
T d1xhca1         103 APNVDLARRSGIHTGRG-ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADI  163 (167)
T ss_dssp             EECCHHHHHTTCCBSSS-EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHH
T ss_pred             ecCCchhhhcCceeCCc-eeeccccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHH
Confidence            554321 1124433221 111111111  1111     111234667888899988887763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.84  E-value=1.2e-10  Score=98.87  Aligned_cols=35  Identities=31%  Similarity=0.553  Sum_probs=31.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~   47 (454)
                      ++|||||||++|+.+|..|++.+  .+|+|||+++..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            68999999999999999999987  489999998753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=2.3e-08  Score=92.35  Aligned_cols=39  Identities=18%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~   50 (454)
                      ..||+|||+|+||++||.++++.  |.+|+|+||....||.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            48999999999999999999987  6799999998755443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2e-09  Score=98.98  Aligned_cols=40  Identities=33%  Similarity=0.596  Sum_probs=38.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||+||++||..|++.|.+|+|||+++++||.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceE
Confidence            7999999999999999999999999999999999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.75  E-value=2.3e-09  Score=98.93  Aligned_cols=40  Identities=48%  Similarity=0.665  Sum_probs=38.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      |+|+|||||+|||+||.+|++.|++|+|||+++.+||.+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~   41 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   41 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceE
Confidence            6899999999999999999999999999999999999764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.74  E-value=2.8e-09  Score=96.18  Aligned_cols=40  Identities=38%  Similarity=0.664  Sum_probs=37.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccc
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWL   52 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~   52 (454)
                      +||+|||||+|||+||..|+++|+ +|+|||+++.+||.+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence            489999999999999999999996 7999999999999765

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.72  E-value=3.8e-09  Score=97.85  Aligned_cols=41  Identities=39%  Similarity=0.734  Sum_probs=39.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      .++|+|||||++||+||..|+++|++|+|||+++++||.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~   42 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY   42 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeee
Confidence            57899999999999999999999999999999999999874

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.7e-09  Score=99.16  Aligned_cols=42  Identities=43%  Similarity=0.657  Sum_probs=39.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +..+|+|||||+|||+||..|++.|++|+|+|+++++||...
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence            457899999999999999999999999999999999999643

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.1e-08  Score=93.53  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG   49 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG   49 (454)
                      .+||+|||+|+|||+||.+++++|.+|+|+||.+..||
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg   44 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            58999999999999999999999999999999876654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.67  E-value=5.6e-09  Score=97.41  Aligned_cols=43  Identities=42%  Similarity=0.628  Sum_probs=39.4

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      ...++|+|||||++||+||..|+++|++|+|||+++.+||...
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~   70 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   70 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeE
Confidence            3457999999999999999999999999999999999999654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.67  E-value=1.4e-08  Score=86.17  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      .+|+|||||++|+.+|..|++.|.++++++..+..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            56999999999999999999999887777765543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.1e-07  Score=82.73  Aligned_cols=146  Identities=15%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC-----------------ccchhhhccC----C-------------
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS-----------------EGLSKVISKH----N-------------  252 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~-----------------~~~~~~l~~~----~-------------  252 (454)
                      .|+|||+|+.|++.|..+++.|.+|.++++.. +.                 ..+.+.+...    +             
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            48999999999999999999999999999853 20                 0000000000    0             


Q ss_pred             ----------------CeEEcCceeEEecCC-----cEEEeCCCEEeeceEEEccCcccCCcCCCCC-------CceeeC
Q 044575          253 ----------------NLHLHPQIDCLREDG-----RVTFVDGCWVTADTILYCTGYSYSFPFLDTK-------GIVVVD  304 (454)
Q Consensus       253 ----------------~i~~~~~v~~v~~~~-----~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~-------g~i~v~  304 (454)
                                      .+..+..|+-+....     .....++..+.++.+++|||..|..|-++..       ..+.++
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~  162 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTN  162 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEc
Confidence                            000111222111111     2344567788999999999988775532210       012222


Q ss_pred             CCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCCC
Q 044575          305 DDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       305 ~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~~  355 (454)
                      +......  +-+..+..|++|++|+...+.. .+.+..+++-++..+.|+.+
T Consensus       163 ~~~~i~~--d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         163 EKGYIVV--DKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             TTSCBCC--CTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTCT
T ss_pred             CCccEee--CchhccCCCcEEEECCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            2211110  1111134589999999987654 47888999999888877653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.59  E-value=5.1e-08  Score=92.47  Aligned_cols=119  Identities=17%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHH------cCCcEEEEeeCCCCCcccccCCCCCCC--------------Ccccccc-ccc
Q 044575           12 SKNVCVIGAGPSGLVAARELRK------EGHRVVVLEQNHDVGGQWLYDPNTDQT--------------EVHSSVY-ASL   70 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~------~g~~v~vie~~~~~GG~w~~~~~~~~~--------------~~~~~~~-~~~   70 (454)
                      .+|||||||||||++||+.|++      .|++|+||||...+|............              ....... ...
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~  111 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF  111 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceE
Confidence            5899999999999999999998      799999999998886432211111000              0000000 000


Q ss_pred             eecCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcC
Q 044575           71 RLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD  133 (454)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~  133 (454)
                      ..............+... .............+..++...++..+..  +..+..+..+...+
T Consensus       112 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Ae~~g~~--~~~~~~~~~~l~~~  171 (380)
T d2gmha1         112 GILTEKYRIPVPILPGLP-MNNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHE  171 (380)
T ss_dssp             EEECSSCEEECCCCTTST-TCCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECT
T ss_pred             EEeeccccccccccCchh-cccccceeehhhHHHHHHHHHHhhccce--eeeecceeeeeecc
Confidence            000111111111111000 0001222356778889999999988877  77777777766554

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.55  E-value=2.5e-07  Score=86.78  Aligned_cols=39  Identities=28%  Similarity=0.335  Sum_probs=33.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHH----cCCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRK----EGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~----~g~~v~vie~~~~~GG~   50 (454)
                      ..||||||||+||++||.+|++    .|.+|+|+||.+..||.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            4799999999999999999975    58999999998766543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.55  E-value=3.2e-08  Score=88.49  Aligned_cols=42  Identities=29%  Similarity=0.373  Sum_probs=35.9

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      |...++|+|||||++|+++|.+|+++|++|+||||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            445689999999999999999999999999999997643333

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.3e-07  Score=86.87  Aligned_cols=38  Identities=34%  Similarity=0.518  Sum_probs=33.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ   50 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~   50 (454)
                      .+||||||+|+|||+||.++++.| +|+|+||.+..||.
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            589999999999999999998877 99999999877765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=3.2e-08  Score=83.77  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      ..+|+|||||++|+.+|..|++.|.++++++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            468999999999999999999999998888877643

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=7.6e-07  Score=74.91  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC--cC----------------ccchhhh----ccC-CCeEEcCceeEE
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN--IS----------------EGLSKVI----SKH-NNLHLHPQIDCL  263 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~--~~----------------~~~~~~l----~~~-~~i~~~~~v~~v  263 (454)
                      .|+|||||++|++.|..+++.|.+|++++++..  +.                +.+...+    .+. .+......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            589999999999999999999999999997431  10                0000111    111 122223333444


Q ss_pred             ecCC------cEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCCCCcccccCcccCCCCCCCceEeccc
Q 044575          264 REDG------RVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIP  330 (454)
Q Consensus       264 ~~~~------~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~  330 (454)
                      ....      .....+++++.++.++.++|..+....+.       ..|.+.+|+...          +..|++|++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~----------t~~~gv~a~gd~  152 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCE----------TNVKGVFAAGDC  152 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCB----------CSSTTEEECSTT
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCcee----------eeCCCEEEEeee
Confidence            3211      23445677889999999999875543322       234455554433          456999999998


Q ss_pred             cccc
Q 044575          331 RKLI  334 (454)
Q Consensus       331 ~~~~  334 (454)
                      ...+
T Consensus       153 ~~~~  156 (184)
T d1fl2a1         153 TTVP  156 (184)
T ss_dssp             BSCS
T ss_pred             cCcc
Confidence            7543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.46  E-value=1.6e-07  Score=76.62  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~  240 (454)
                      .+++|+|||||.+|+|+|..+.+.| ++|++++|++..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            4678999999999999999999985 569999998754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.43  E-value=2.7e-06  Score=79.92  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=32.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++.||||||+|++|+.+|.+|++.|++|+|+|+..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999999999999853

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.43  E-value=6.1e-07  Score=79.85  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..|+|||+|++|+-+|..+++.|.+|+++++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35999999999999999999999999999998754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.35  E-value=1.9e-06  Score=80.92  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .||||||+|++|+.+|.+|++.|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            389999999999999999999999999999953

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.33  E-value=3.3e-07  Score=81.32  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4999999999999999999999999999987654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=1.7e-07  Score=86.38  Aligned_cols=44  Identities=32%  Similarity=0.485  Sum_probs=39.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYD   54 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~   54 (454)
                      ..+||+||||||+|++||..|+++  |++|+|||+++.+||.+.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g   94 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG   94 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence            358999999999999999999975  89999999999999987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=3.6e-07  Score=76.34  Aligned_cols=38  Identities=18%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+|+|+|||+|++|++.|..|++.|.+|+++++.+.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            35699999999999999999999999999999998877

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.25  E-value=9.2e-07  Score=80.74  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|+|||+|++|+-+|..|++.|.+|++++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            58999999999999999999999999999998654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.24  E-value=2.3e-06  Score=69.90  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=30.7

Q ss_pred             CcEEEE--CcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575           13 KNVCVI--GAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus        13 ~~VvII--GaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      ..|+||  |||+.|+.+|..|++.|.+|+++++.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            456665  99999999999999999999999997654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.21  E-value=4e-07  Score=85.79  Aligned_cols=39  Identities=28%  Similarity=0.432  Sum_probs=35.1

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV   47 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~   47 (454)
                      |..++||||||+|+||+++|.+|++.|++|+|+|+....
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            456799999999999999999999999999999996543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=4.7e-06  Score=65.21  Aligned_cols=97  Identities=21%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +.++|+|||+|.+++-.|..|++...+|+++-+++.+-                                          
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~------------------------------------------   66 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK------------------------------------------   66 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC------------------------------------------
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc------------------------------------------
Confidence            46899999999999999999999988999999876320                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT  170 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt  170 (454)
                              ..+...   ++....-++.  +.++++|..+...+..         --.|++.+..+++..++..|.|+++.
T Consensus        67 --------~~~~~~---~~~~~~~~I~--v~~~~~v~~i~G~~~~---------v~~v~l~~~~tge~~~l~vdgvFv~I  124 (126)
T d1fl2a2          67 --------ADQVLQ---DKLRSLKNVD--IILNAQTTEVKGDGSK---------VVGLEYRDRVSGDIHNIELAGIFVQI  124 (126)
T ss_dssp             --------SCHHHH---HHHHTCTTEE--EESSEEEEEEEESSSS---------EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             --------cccccc---ccccccccee--EEcCcceEEEEccccc---------eeeEEEEECCCCCEEEEECCEEEEEe
Confidence                    001111   1221112344  7889999999875432         23467777666777889999999998


Q ss_pred             C
Q 044575          171 G  171 (454)
Q Consensus       171 G  171 (454)
                      |
T Consensus       125 G  125 (126)
T d1fl2a2         125 G  125 (126)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.5e-05  Score=62.31  Aligned_cols=100  Identities=21%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +.++|+|||+|-+++-.|..|.+...+|+++-|++.+                                           
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~-------------------------------------------   62 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-------------------------------------------   62 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-------------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc-------------------------------------------
Confidence            4689999999999999999999999999999887532                                           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC-CeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA-DKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~d~vViA  169 (454)
                             ...+...+.+.+..++-++.  +..++.+.+|...+..         --.|++.+..+ +...++..|.|+++
T Consensus        63 -------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~i~G~~~~---------v~~v~l~~~~~~e~~~~l~~dgvFv~  124 (126)
T d1trba2          63 -------RAEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMG---------VTGVRLRDTQNSDNIESLDVAGLFVA  124 (126)
T ss_dssp             -------CCCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSS---------EEEEEEECCTTCCCCEEEECSEEEEC
T ss_pred             -------cchhHHHHHHHHhhccccee--EecceEEEEEECCCCc---------eEEEEEEECCCCceEEEEECCEEEEE
Confidence                   11245556666655544554  7789999999875431         22366666433 23357899999999


Q ss_pred             cC
Q 044575          170 TG  171 (454)
Q Consensus       170 tG  171 (454)
                      .|
T Consensus       125 iG  126 (126)
T d1trba2         125 IG  126 (126)
T ss_dssp             SC
T ss_pred             eC
Confidence            87

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.15  E-value=2.4e-06  Score=76.01  Aligned_cols=88  Identities=22%  Similarity=0.292  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-------------------c-hhhh---------------
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-------------------L-SKVI---------------  248 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-------------------~-~~~l---------------  248 (454)
                      ..++|+|||+|++|+-+|..|++.|.+|++++|++.....                   + .+..               
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            3479999999999999999999999999999987643100                   0 0000               


Q ss_pred             -------------------------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575          249 -------------------------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS  291 (454)
Q Consensus       249 -------------------------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~  291 (454)
                                               .....+..+..+..+..+.   .+++.||+++++|.+|.|.|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccc
Confidence                                     0011355667777776443   578899999999999999997643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=3e-06  Score=69.71  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=24.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcE
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRV   38 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v   38 (454)
                      .++|+|||||..|+-+|..+++.|.++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            579999999999999999999998754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=1.2e-06  Score=74.39  Aligned_cols=38  Identities=8%  Similarity=0.145  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCcC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNIS  241 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~~  241 (454)
                      .+|||+|||||++|+++|..|++.|. .|++++|++.+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            46899999999999999999999997 599999998873

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.08  E-value=2e-06  Score=79.83  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~  240 (454)
                      |+|+|||||++|+-+|..|++.+  .+|++++|++.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            79999999999999999998765  599999998654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.05  E-value=8e-07  Score=82.96  Aligned_cols=37  Identities=35%  Similarity=0.606  Sum_probs=33.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHH-----HcCCcEEEEeeCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELR-----KEGHRVVVLEQNHDV   47 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~-----~~g~~v~vie~~~~~   47 (454)
                      ..+||+||||||+|+++|..|+     +.|++|+||||++.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4599999999999999999996     469999999998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.03  E-value=2.5e-06  Score=77.42  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|||+|++|+-.|..|++.|.+|+++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            599999999999999999999999999998754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.02  E-value=7.9e-06  Score=72.75  Aligned_cols=137  Identities=12%  Similarity=0.036  Sum_probs=96.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-----------------chhhh------------cc------
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-----------------LSKVI------------SK------  250 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-----------------~~~~l------------~~------  250 (454)
                      -.++|||+|+.|+++|..+++.|.+|+++++.+.+.-.                 ....+            ..      
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  122 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHH
Confidence            46999999999999999999999999999987764100                 00000            00      


Q ss_pred             ------------------------C-CCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCC---------
Q 044575          251 ------------------------H-NNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLD---------  296 (454)
Q Consensus       251 ------------------------~-~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------  296 (454)
                                              . ........ .++.... ....+|+++++|.||+|||.+|+.+.+.         
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~d~~-~v~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~  200 (261)
T d1mo9a1         123 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCP-AKVIDNH-TVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELA  200 (261)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSC-CEEEETT-EEEETTEEEEBSCEEECCCEECCCCCSTCEECCHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeE-EEEeeec-ccccccceEeeeeeeeccCCCCCcCcccccccccccc
Confidence                                    0 00111111 1222222 3345788999999999999999977543         


Q ss_pred             --------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575          297 --------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 --------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~  354 (454)
                              ++|.|.||++.+          ++.|++|++||+...+. .+.|..|++.+|.++.|+.
T Consensus       201 ~~~Gl~~~~~G~I~Vn~~~~----------Ts~~~IyA~GDv~~~~~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         201 KILGLDLGPKGEVLVNEYLQ----------TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HHHTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred             cceeeeeccCCEEEeCCCcc----------cCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHCCCC
Confidence                    456777777666          66899999999986554 4789999999999999973

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.99  E-value=3.5e-05  Score=62.22  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|||||.+|+-+|..+.+.|. +|+++.+++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            4689999999999999999999987 588998865

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=8.2e-06  Score=70.83  Aligned_cols=39  Identities=15%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhh---------------------hcCeEEEecccCCc
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVE---------------------VAKEVHLSAKSLNI  240 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~---------------------~~~~V~l~~r~~~~  240 (454)
                      .+.+++|+|||+|++|+|+|..+.+                     ..++|+++.|++..
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            4578999999999999999999987                     24789999998754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=4.4e-05  Score=59.66  Aligned_cols=97  Identities=19%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK   90 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (454)
                      +.++|+|||+|-+++-.|..|++...+|+++-|++.+-                                          
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r------------------------------------------   70 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------------------------------------------   70 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC------------------------------------------
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc------------------------------------------
Confidence            56899999999999999999999999999999876431                                          


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575           91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA  169 (454)
Q Consensus        91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA  169 (454)
                              ..+...   ++..+.-++.  +.+++++..|.-.+...      . --.+.+.+..+++..++..|.|.||
T Consensus        71 --------a~~~~~---~~l~~~~nI~--v~~~~~v~~i~Gd~~~~------~-v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          71 --------ASKIMQ---QRALSNPKID--VIWNSSVVEAYGDGERD------V-LGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             --------SCHHHH---HHHHTCTTEE--EECSEEEEEEEESSSSS------S-EEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------cchhhh---hccccCCceE--EEeccEEEEEEccCCcc------c-EEEEEEEECCCCCEEEEECCEEEEE
Confidence                    012222   2222222333  78899999998754321      0 2246666665667778999999987

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.83  E-value=9e-06  Score=72.29  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++|||+|+.|+..|..+++.|.+|.++++..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            38999999999999999999999999999753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=1.4e-05  Score=68.90  Aligned_cols=40  Identities=20%  Similarity=0.256  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEcCCCCHHHHHHHHh--------------------hh-cCeEEEecccCCc
Q 044575          201 EPFRNEVVVVVGNSLSGQDISMELV--------------------EV-AKEVHLSAKSLNI  240 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~A~~l~--------------------~~-~~~V~l~~r~~~~  240 (454)
                      ..+.+++|+|||+|++|+|+|..+.                    +. .++|+++.|+...
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            3457899999999999999999876                    23 4679999998764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=1.5e-05  Score=68.51  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC-c------------Ccc-------------------chhhhccCCCe
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN-I------------SEG-------------------LSKVISKHNNL  254 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~-~------------~~~-------------------~~~~l~~~~~i  254 (454)
                      .|+|||+|+.|+|.|...++.|.++.|+..+.. .            ...                   +.+.+....++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            489999999999999999999999999976421 1            000                   11122222222


Q ss_pred             E-EcCceeEEe-cCC---cEEEeCCCEEeeceEEEccCccc
Q 044575          255 H-LHPQIDCLR-EDG---RVTFVDGCWVTADTILYCTGYSY  290 (454)
Q Consensus       255 ~-~~~~v~~v~-~~~---~v~~~dG~~i~~D~vI~atG~~~  290 (454)
                      . ....|.++. +++   .|++.+|.++.+..||+|||.-.
T Consensus        84 ~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          84 HLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             EEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            2 234455543 333   46788999999999999999653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.77  E-value=1.3e-05  Score=71.09  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~  239 (454)
                      +|+|||+|++|+-+|..|++.| ++|+++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            5999999999999999999999 57999998764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.74  E-value=5.2e-06  Score=72.64  Aligned_cols=38  Identities=29%  Similarity=0.425  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+++|+|||+|++|+..|..|++.|.+|+++++++.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            35689999999999999999999999999999998877

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.69  E-value=1.3e-05  Score=75.77  Aligned_cols=46  Identities=22%  Similarity=0.401  Sum_probs=36.2

Q ss_pred             CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 044575            1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHD   46 (454)
Q Consensus         1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~   46 (454)
                      ||++....-.+.+|+||||||+||+.+|.+|++.+ ++|+|+|+.+.
T Consensus         6 ~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1           6 LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             SBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             hhCCcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            44443322345699999999999999999999875 89999999753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.63  E-value=1.7e-05  Score=74.12  Aligned_cols=34  Identities=35%  Similarity=0.740  Sum_probs=32.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .||+||||+|+||..+|.+|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5899999999999999999999999999999974

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.62  E-value=2.7e-05  Score=69.52  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .|+|||+|.+|+-+|.+|++.|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.54  E-value=3.1e-05  Score=73.11  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=32.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~   46 (454)
                      +.||+||||||+||+.+|.+|++.+ .+|+|+|+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999987 79999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=3.5e-05  Score=56.57  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCC--C-EEe
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDG--C-WVT  278 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG--~-~i~  278 (454)
                      ++++|+|+|+|.|.||.-+|..|.+.|.+|+++..+...  ...+.+.....               +.+..-  . .-.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~--~~~~~~~~~~~---------------~~~~~~~~~~~~~   64 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP--PGLDKLPEAVE---------------RHTGSLNDEWLMA   64 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC--TTGGGSCTTSC---------------EEESBCCHHHHHH
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc--hhHHHHhhccc---------------eeecccchhhhcc
Confidence            578999999999999999999999999999999875542  12222221111               111110  1 124


Q ss_pred             eceEEEccCcccCCcCCC
Q 044575          279 ADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       279 ~D~vI~atG~~~~~~~l~  296 (454)
                      +|.||.++|..++.|++.
T Consensus        65 ~d~vi~SPGi~~~~~~~~   82 (93)
T d2jfga1          65 ADLIVASPGIALAHPSLS   82 (93)
T ss_dssp             CSEEEECTTSCTTSHHHH
T ss_pred             CCEEEECCCCCCCCHHHH
Confidence            899999999998877653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.47  E-value=7e-05  Score=66.92  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=30.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .|+|||+|.+|+-+|.+|++.|.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.44  E-value=0.00012  Score=62.90  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=91.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc----------Ccc-------c--hhhhccC---------CC----
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI----------SEG-------L--SKVISKH---------NN----  253 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~----------~~~-------~--~~~l~~~---------~~----  253 (454)
                      ..++|||+|+.|+++|..+++.|.+|+++++...-          ...       +  .+.+...         ..    
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG   85 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence            46999999999999999999999999999875310          000       0  0000000         00    


Q ss_pred             -------------------eEEcCceeEEecC-----CcEEEeCCCEEeeceEEEccCcccCCc-C---CC---------
Q 044575          254 -------------------LHLHPQIDCLRED-----GRVTFVDGCWVTADTILYCTGYSYSFP-F---LD---------  296 (454)
Q Consensus       254 -------------------i~~~~~v~~v~~~-----~~v~~~dG~~i~~D~vI~atG~~~~~~-~---l~---------  296 (454)
                                         ......++-+...     ......++..+++|.+|+|||.+|..+ .   ..         
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~  165 (220)
T d1lvla1          86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDL  165 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCC
T ss_pred             HHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCcccccccccccCCcceeeeh
Confidence                               0001112222111     112334566789999999999987642 1   10         


Q ss_pred             --CCCceeeCCCCcccccCcccCCCCCCCceEecccccccch-hHHHHHHHHHHHHHcCCCC
Q 044575          297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF-PFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~-~~a~~qa~~~a~~i~g~~~  355 (454)
                        +++.+.+|+..+          ++.|++|++||+...+.+ +.|..|++.+|.+++|+..
T Consensus       166 ~~~~g~i~vd~~~~----------T~~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~  217 (220)
T d1lvla1         166 KMNGAAIAIDERCQ----------TSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKAR  217 (220)
T ss_dssp             CEETTEECCCTTCB----------CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             hhcCCcccccchhh----------cCCCCEEEEEEeCCcccchhhhhhhHHHHHHHHcCCCC
Confidence              246677776665          567999999999876544 7899999999999999854

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=6.9e-05  Score=54.89  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .++|+|||.|-+|+++|+.|.+.|.+|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            57899999999999999999999999999998653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=1.3e-05  Score=70.15  Aligned_cols=31  Identities=35%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +|+|||||++|+++|.+|+++|.+|+++|+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            6999999999999999999999877666653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.39  E-value=9.9e-05  Score=66.76  Aligned_cols=32  Identities=19%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~  238 (454)
                      +|+|||+|.+|+-+|..|++.| ++|++++|++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6999999999999999999998 5799999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.35  E-value=2.9e-05  Score=72.17  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..||+||||||+||+.+|.+|++. .+|+|+|+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            458999999999999999999876 99999999753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.33  E-value=6e-05  Score=64.75  Aligned_cols=138  Identities=14%  Similarity=0.145  Sum_probs=89.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-----------c----------hhhhccCC-------------
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-----------L----------SKVISKHN-------------  252 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-----------~----------~~~l~~~~-------------  252 (454)
                      .|+|||+|++|+++|..+++.|.+|+++++.+.+.-.           +          ........             
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM   84 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence            5999999999999999999999999999987664100           0          00000000             


Q ss_pred             ----------------CeEEcCceeEE------ecCCcEEE----eCCCEEeeceEEEccC-----cccCCcCCC-----
Q 044575          253 ----------------NLHLHPQIDCL------REDGRVTF----VDGCWVTADTILYCTG-----YSYSFPFLD-----  296 (454)
Q Consensus       253 ----------------~i~~~~~v~~v------~~~~~v~~----~dG~~i~~D~vI~atG-----~~~~~~~l~-----  296 (454)
                                      .......|+-+      .....+..    .++..+++|.||+|||     +.|+++.|.     
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~g  164 (221)
T d1dxla1          85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIG  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTT
T ss_pred             HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcC
Confidence                            00001112211      11111111    1234677999999999     567776542     


Q ss_pred             ----CCCceeeCCCCcccccCcccCCCCCCCceEecccccccch-hHHHHHHHHHHHHHcCCC
Q 044575          297 ----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF-PFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       297 ----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~-~~a~~qa~~~a~~i~g~~  354 (454)
                          +.|.|.+|+...          ++.|++|++||+...+.+ +.|..|++.+|.+|+|+.
T Consensus       165 v~~~~~G~i~vd~~~~----------T~v~gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         165 VETDKLGRILVNERFS----------TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CCBCSSSCBCCCTTCB----------CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             ceEcCCCcEEeCCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence                345555555444          568999999999876544 789999999999999975

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00023  Score=65.48  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|.+|+-.|..|++.|.+|+++++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            3899999999999999999999999999986643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.30  E-value=0.00021  Score=63.45  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~  240 (454)
                      -+|+|||||++|+=+|..|++.| .+|++++|++.+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            37999999999999999999999 499999998765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.00015  Score=64.97  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999999764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.09  E-value=0.00018  Score=59.43  Aligned_cols=34  Identities=24%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||||..|..+|++|.+.|++|+|+||+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            4789999999999999999999999999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00025  Score=58.24  Aligned_cols=148  Identities=18%  Similarity=0.255  Sum_probs=84.5

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      ..++|+|+|+|+|-+|--++..|.+.+.+|+++.|+......+.+.+.+..      .+..+..      .+-...++|.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~------~~~~~~~------~~~~~~~~dl   82 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG------SIQALSM------DELEGHEFDL   82 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS------SEEECCS------GGGTTCCCSE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc------ccccccc------ccccccccce
Confidence            357899999999999999999999999999999997655444444333221      1222211      1112235899


Q ss_pred             EEEcc--CcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCce---EecccccccchhHHHHHHHHHHHHHcCCCCC
Q 044575          282 ILYCT--GYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLS---FVGIPRKLIGFPFFESQAKWIAQLLSGKRTL  356 (454)
Q Consensus       282 vI~at--G~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~---~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~l  356 (454)
                      ||-||  |..++.+.++.. .  +....  ..|+-+|.+...|-+-   ..|.........+...||...-+.|.|..  
T Consensus        83 iIN~Tp~G~~~~~~~~~~~-~--~~~~~--~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl~MLi~Qa~~~f~lwtG~~--  155 (170)
T d1nyta1          83 IINATSSGISGDIPAIPSS-L--IHPGI--YCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVL--  155 (170)
T ss_dssp             EEECCSCGGGTCCCCCCGG-G--CCTTC--EEEESCCCSSCCHHHHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSSC--
T ss_pred             eecccccCcccCCCCCcHH-H--hccCc--EEEEeecCCCCCHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHhCCC--
Confidence            99999  444433222210 0  11111  1223333321111111   11322222345688889998889999963  


Q ss_pred             CCHHHHHHHHHH
Q 044575          357 PSWDQMMQSVKE  368 (454)
Q Consensus       357 p~~~~~~~~~~~  368 (454)
                      |+.+.|.+.+.+
T Consensus       156 ~~~~~~~~~l~~  167 (170)
T d1nyta1         156 PDVEPVIKQLQE  167 (170)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            677777776654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.00  E-value=0.00028  Score=58.52  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||+|..|++.|..|++.|++|+++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999999999999999999999999965

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.98  E-value=0.00052  Score=61.91  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|.+|+-.|..+++.|.+|.++++.+..
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            5999999999999999999999999999987643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00056  Score=54.72  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             CCCCchhh-ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575            1 MVSDDHQQ-CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus         1 m~~~~~~~-~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      ||..-+-. ..+.++|+|||||..|+.-|+.|.+.|.+|+|+...
T Consensus         1 ~~~~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           1 MVKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCCCEEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CcccchhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            66544322 245789999999999999999999999999999764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.72  E-value=0.0011  Score=60.23  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=30.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|||+|.+|+-+|..+++.|.+|.++++.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.68  E-value=0.0018  Score=48.28  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|+|||+|.+|+-.|..|++...+++++.+++
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            36899999999999999999999888887777654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0014  Score=55.83  Aligned_cols=138  Identities=20%  Similarity=0.139  Sum_probs=89.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc----------Cccch------hhhcc---C------C---------
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI----------SEGLS------KVISK---H------N---------  252 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~----------~~~~~------~~l~~---~------~---------  252 (454)
                      .|+|||+|+.|+++|..+++.|.+|.++++...-          ...+.      .....   .      .         
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            3899999999999999999999999999875421          00000      00000   0      0         


Q ss_pred             --------------CeEEcCceeEEecC------CcEE-EeCCCEEeeceEEEccCcccCCc--------C---------
Q 044575          253 --------------NLHLHPQIDCLRED------GRVT-FVDGCWVTADTILYCTGYSYSFP--------F---------  294 (454)
Q Consensus       253 --------------~i~~~~~v~~v~~~------~~v~-~~dG~~i~~D~vI~atG~~~~~~--------~---------  294 (454)
                                    .......|+-+...      ..+. ..+...+.++.++.+||..|..|        .         
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~  164 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQ  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCC
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCcE
Confidence                          00112223333221      1122 23345677999999999766543        2         


Q ss_pred             CCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575          295 LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       295 l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~  354 (454)
                      ++++|.|.+|+..+          ++.|++|++||+...+ ..+.|..|++.+|+++.+..
T Consensus       165 ~~~~G~I~vd~~~~----------T~~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         165 TDDKGHIIVDEFQN----------TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             BCTTSCBCCCTTCB----------CSSTTEEECGGGGTSSCCHHHHHHHHHHHHHHHHSCC
T ss_pred             ECCCccEEeCCCcc----------ccCCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcCCC
Confidence            22456666776665          5689999999998765 35799999999999887753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.64  E-value=0.00061  Score=61.80  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=35.3

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      .|+|+|||||.||+=+|..|++.|.+|+++++++++.-
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            58999999999999999999999999999999988743

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.61  E-value=0.0011  Score=53.30  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .-+|+|||+|.+|+.|++.+++.|.+|+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            5789999999999999999999999999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.60  E-value=0.00063  Score=61.81  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..|+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4589999999999999999999999999999987765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.58  E-value=0.00098  Score=54.32  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      .-+|+|||||.+|+.||+.+.+.|.+|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            46899999999999999999999999999998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.51  E-value=0.00097  Score=51.96  Aligned_cols=32  Identities=25%  Similarity=0.597  Sum_probs=30.6

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|+|+|.-|...|+.|.+.|++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            69999999999999999999999999999865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00095  Score=53.30  Aligned_cols=34  Identities=12%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                      .+||+|+|||||..|.+-|..|.+.|.+|+++..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            5789999999999999999999999999999964

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0017  Score=52.56  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +|+|||+|.-|...|..|.+.|++|++++|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999999763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.0016  Score=50.73  Aligned_cols=33  Identities=36%  Similarity=0.580  Sum_probs=31.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++++|||+|.-|..+|..|.+.|++|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            579999999999999999999999999999865

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.29  E-value=0.0028  Score=54.45  Aligned_cols=79  Identities=24%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             EEeCCC--EEeeceEEEccCcccCCcC------------------CCCCCceeeCCCCcccccCcccCCCCCCCceEecc
Q 044575          270 TFVDGC--WVTADTILYCTGYSYSFPF------------------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGI  329 (454)
Q Consensus       270 ~~~dG~--~i~~D~vI~atG~~~~~~~------------------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~  329 (454)
                      +..||+  ++++|.||+|||.+|..+.                  +++.|.|.+|+.+.          ++.|++|++||
T Consensus       133 ~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~----------T~~~gIyA~GD  202 (233)
T d1xdia1         133 TAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR----------TLATGIYAAGD  202 (233)
T ss_dssp             ECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB----------CSSTTEEECSG
T ss_pred             EecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCcCCCcc----------cCCCCEEEEEE
Confidence            334665  4779999999999986431                  23456666766555          56799999999


Q ss_pred             cccccc-hhHHHHHHHHHHHHHcCCCCCCC
Q 044575          330 PRKLIG-FPFFESQAKWIAQLLSGKRTLPS  358 (454)
Q Consensus       330 ~~~~~~-~~~a~~qa~~~a~~i~g~~~lp~  358 (454)
                      +...+. .+.|..|++.+|.++.|+...|-
T Consensus       203 v~~~~~l~~~A~~~g~~aa~~~~g~~~~p~  232 (233)
T d1xdia1         203 CTGLLPLASVAAMQGRIAMYHALGEGVSPI  232 (233)
T ss_dssp             GGTSCSCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             eCCCchhHHHHHHHHHHHHHHHcCCCCCCC
Confidence            986554 47999999999999999876663

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.25  E-value=0.00073  Score=55.83  Aligned_cols=81  Identities=15%  Similarity=0.063  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCC-EE-eeceE
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGC-WV-TADTI  282 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~-~i-~~D~v  282 (454)
                      .|+++|||+|..|.-+|..|++.|.+|+++.|.+.....+.+   ................. .....|-+ .+ ++|.|
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~aD~i   76 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD---RGAIIAEGPGLAGTAHP-DLLTSDIGLAVKDADVI   76 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---HTSEEEESSSCCEEECC-SEEESCHHHHHTTCSEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---cCCCchhhhhhhhhhhh-hhhhhhhHhHhcCCCEE
Confidence            379999999999999999999999999999986543222111   11112222222222111 12233322 23 39999


Q ss_pred             EEccCcc
Q 044575          283 LYCTGYS  289 (454)
Q Consensus       283 I~atG~~  289 (454)
                      |+|+...
T Consensus        77 ii~v~~~   83 (184)
T d1bg6a2          77 LIVVPAI   83 (184)
T ss_dssp             EECSCGG
T ss_pred             EEEEchh
Confidence            9998644

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.0031  Score=54.07  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=88.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch---------------hh-------------hccC-------
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS---------------KV-------------ISKH-------  251 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~---------------~~-------------l~~~-------  251 (454)
                      .|+|||+|+.|+..|..+++.|.+|.++++.+.......               +.             ....       
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            589999999999999999999999999997543200000               00             0000       


Q ss_pred             CC-----------------------eEEcCceeEE------ecCCc--EEEeCCC--EEeeceEEEccCcccCCcC----
Q 044575          252 NN-----------------------LHLHPQIDCL------REDGR--VTFVDGC--WVTADTILYCTGYSYSFPF----  294 (454)
Q Consensus       252 ~~-----------------------i~~~~~v~~v------~~~~~--v~~~dG~--~i~~D~vI~atG~~~~~~~----  294 (454)
                      ..                       ......|+-+      ...+.  +...+++  .+.++.++++||.+|..+-    
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~  164 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDS  164 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEE
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEEeec
Confidence            00                       0001112222      22221  2223344  3679999999999987432    


Q ss_pred             -------------CCC-CCceeeCCCCcccccCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHcCCCC
Q 044575          295 -------------LDT-KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       295 -------------l~~-~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~g~~~  355 (454)
                                   ++. .|.|.+|++++          |+.|++|++||+....  ..+.|..|++.+|+++.|..+
T Consensus       165 ~~~~~~l~~~gv~l~~~~g~I~vd~~~~----------TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~~  231 (235)
T d1h6va1         165 CTRTIGLETVGVKINEKTGKIPVTDEEQ----------TNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGST  231 (235)
T ss_dssp             SCTTSCCTTTTCCCCSSSCCBCCCTTSB----------CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             cceeeccccceeeeccccCccccCCccc----------cCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence                         122 35666666665          6789999999998543  347899999999999987543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.18  E-value=0.0021  Score=48.46  Aligned_cols=75  Identities=11%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      +.++|+|+|||+|.+|..-|..|.+.|.+|+++....  .+.+..+..+.       .++-+...    ++++....++.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~--~~~~~~~~~~~-------~i~~~~~~----~~~~dl~~~~l   75 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF--IPQFTVWANEG-------MLTLVEGP----FDETLLDSCWL   75 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC--CHHHHHHHTTT-------SCEEEESS----CCGGGGTTCSE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC--ChHHHHHHhcC-------CceeeccC----CCHHHhCCCcE
Confidence            3468999999999999999999999999999986543  33343333221       12211111    12222234888


Q ss_pred             EEEccCcc
Q 044575          282 ILYCTGYS  289 (454)
Q Consensus       282 vI~atG~~  289 (454)
                      |+.||+-.
T Consensus        76 v~~at~d~   83 (113)
T d1pjqa1          76 AIAATDDD   83 (113)
T ss_dssp             EEECCSCH
T ss_pred             EeecCCCH
Confidence            99998765

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.15  E-value=0.0025  Score=50.34  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      |..+++|.|||+|.-|.++|..|+..|.  +++++|.++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            5567899999999999999999999874  899999764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.15  E-value=0.0016  Score=56.68  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ++|+|||+|.+|+-+|..|++.|.+|++++|..
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            689999999999999999999999999999854

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=58.92  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=33.5

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++++++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            367999999999999999999999999999998876

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.11  E-value=0.0052  Score=55.36  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|||+|.+|+-.|.++++.|.+|.++++.+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~   53 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF   53 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.08  E-value=0.0032  Score=47.40  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||+|..|..-|+.|.+.|.+|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            46899999999999999999999999999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.00  E-value=0.0025  Score=53.59  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=30.3

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|||.|.-|+..|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.92  E-value=0.0017  Score=53.91  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|||||.-|.+.|..|++.|++|+++.+++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            34689999999999999999999999999999865

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0021  Score=55.37  Aligned_cols=34  Identities=24%  Similarity=0.128  Sum_probs=32.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|.+|+=+|..|++.|.+|+++++++.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            4899999999999999999999999999998876

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.002  Score=55.33  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhc-------CeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVA-------KEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~-------~~V~l~~r~~~~  240 (454)
                      ..+|+|||+|++|+.+|..|++.|       .+|+++++.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            368999999999999999999987       479999998876

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0023  Score=57.39  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=33.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      .|+|||||.||+-+|..|++.|.+|+++++++.+.-
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            589999999999999999999999999999987643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.75  E-value=0.0049  Score=49.11  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      |.++++|.|||+|.-|.++|..|...++ +++++|.++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            4557899999999999999998888886 899999765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.65  E-value=0.0055  Score=49.88  Aligned_cols=38  Identities=13%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      .|+|+|||+|.+|.-+|..|++.|.+|+++.|+..-..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~   39 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAK   39 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHH
Confidence            58999999999999999999999999999999865433

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0055  Score=50.82  Aligned_cols=33  Identities=39%  Similarity=0.554  Sum_probs=31.4

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|||||.-|...|..+++.|++|+++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            689999999999999999999999999999865

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.55  E-value=0.0043  Score=53.01  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~  240 (454)
                      +|+|||+|++|+.+|..|.+.  +.+|+++++.+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            799999999999999999875  6699999998876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.46  E-value=0.0053  Score=50.67  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|||||.-|...|..++..|++|+++|+++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999865

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.38  E-value=0.019  Score=46.42  Aligned_cols=142  Identities=17%  Similarity=0.270  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT  281 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~  281 (454)
                      ..++|+|+|+|+|-+|--++..|.+.+++|+++.|+......+.+.+....      .+..+..+      +....++|.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~------~~~~~~~~------~~~~~~~di   82 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG------NIQAVSMD------SIPLQTYDL   82 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS------CEEEEEGG------GCCCSCCSE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc------ccchhhhc------cccccccce
Confidence            457899999999999999999999888999999998654444444433222      22222211      122235999


Q ss_pred             EEEccCcccC--CcCCCC----CCceeeCCCCcccccCcccC-CCCCCCceE-----ecccccccchhHHHHHHHHHHHH
Q 044575          282 ILYCTGYSYS--FPFLDT----KGIVVVDDDRVGPLYEHTFP-PSLAPSLSF-----VGIPRKLIGFPFFESQAKWIAQL  349 (454)
Q Consensus       282 vI~atG~~~~--~~~l~~----~g~i~v~~~~~~~~~~~~~~-~~~~p~l~~-----iG~~~~~~~~~~a~~qa~~~a~~  349 (454)
                      ||-||..--.  .+.+..    .+.+.         ++-++. +.  ++.+.     .|.........+...||...-+.
T Consensus        83 iIN~tp~g~~~~~~~~~~~~~~~~~~~---------~D~vy~~p~--~T~~l~~A~~~g~~~v~~Gl~Ml~~Qa~~~f~i  151 (171)
T d1p77a1          83 VINATSAGLSGGTASVDAEILKLGSAF---------YDMQYAKGT--DTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHL  151 (171)
T ss_dssp             EEECCCC-------CCCHHHHHHCSCE---------EESCCCTTS--CCHHHHHHHHTTCCCEECSHHHHHHHHHHHHHH
T ss_pred             eeecccccccccccchhhhhhccccee---------eeeeccCcc--cHHHHHHHHHcCCCcccCcHHHHHHHHHHHHHH
Confidence            9999975422  111110    01111         222221 11  11111     12222122456888899988899


Q ss_pred             HcCCCCCCCHHHHHHHHHH
Q 044575          350 LSGKRTLPSWDQMMQSVKE  368 (454)
Q Consensus       350 i~g~~~lp~~~~~~~~~~~  368 (454)
                      |.|..  |+.+.+.+.+.+
T Consensus       152 wtg~~--~~~~~~~~~l~~  168 (171)
T d1p77a1         152 WRGVM--PDFVSVYEQLKK  168 (171)
T ss_dssp             HHSCC--CCHHHHHHHHHH
T ss_pred             HHCCC--CChHHHHHHHHH
Confidence            99963  566666665543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.013  Score=43.81  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             CCCcEEEECcC-----------hHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAG-----------PSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG-----------~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..++|+|||+|           +++..|+++|++.|++++++.-++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            35789999999           5899999999999999999998763

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.01  Score=56.07  Aligned_cols=43  Identities=28%  Similarity=0.523  Sum_probs=40.5

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL   52 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~   52 (454)
                      +..+||+|+|-|..=-..|.+|++.|.+|+-+|+++.-||.|.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~a   46 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   46 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccc
Confidence            4579999999999999999999999999999999999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.10  E-value=0.0097  Score=47.87  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=30.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|||+|.-|.+.|+.|++.|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.99  E-value=0.0074  Score=51.44  Aligned_cols=69  Identities=13%  Similarity=0.100  Sum_probs=50.3

Q ss_pred             EeeceEEEccCc-ccCCcC---------CCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHH
Q 044575          277 VTADTILYCTGY-SYSFPF---------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKW  345 (454)
Q Consensus       277 i~~D~vI~atG~-~~~~~~---------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~  345 (454)
                      ..++-+++++|. .|+...         ++++|.|.+|++.+          |+.|++|++||+...+. .+.|..|++.
T Consensus       147 ~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~----------TsvpgVyAaGDv~~~~~l~~~A~~eG~~  216 (229)
T d1ojta1         147 VAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMR----------TNVPHIYAIGDIVGQPMLAHKAVHEGHV  216 (229)
T ss_dssp             EEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSB----------CSSTTEEECGGGTCSSCCHHHHHHHHHH
T ss_pred             eecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCcc----------CCCCCEEEEEecCCCcchHHHHHHHHHH
Confidence            445555555554 454322         34677788887776          67899999999986654 4789999999


Q ss_pred             HHHHHcCCCC
Q 044575          346 IAQLLSGKRT  355 (454)
Q Consensus       346 ~a~~i~g~~~  355 (454)
                      +|.++.|+..
T Consensus       217 Aa~~i~G~~~  226 (229)
T d1ojta1         217 AAENCAGHKA  226 (229)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHcCCCC
Confidence            9999999754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.98  E-value=0.012  Score=46.54  Aligned_cols=34  Identities=26%  Similarity=0.491  Sum_probs=31.6

Q ss_pred             CCcEEEEC-cChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIG-AGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIG-aG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.||| .|.-|...|+.|++.|++|.++|+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47899999 69999999999999999999999865

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.97  E-value=0.0076  Score=51.26  Aligned_cols=65  Identities=18%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             eceEEEccCcccCCcCCC---------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccch-hHHHHHHHHHHH
Q 044575          279 ADTILYCTGYSYSFPFLD---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF-PFFESQAKWIAQ  348 (454)
Q Consensus       279 ~D~vI~atG~~~~~~~l~---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~-~~a~~qa~~~a~  348 (454)
                      .+..+.++|.+|+++.|.         +.|.+.+|+...          ++.|++|++||+...+.+ +.|..+++.+|+
T Consensus       154 ~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~----------T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~  223 (233)
T d1v59a1         154 GSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN----------SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVE  223 (233)
T ss_dssp             CEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHH
T ss_pred             ccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEe----------cCCCCEEEEcCCcccHHHHHHHHHHHHHHHH
Confidence            344455899999988653         334455555444          567999999999866544 689999999999


Q ss_pred             HHcCC
Q 044575          349 LLSGK  353 (454)
Q Consensus       349 ~i~g~  353 (454)
                      ++.|.
T Consensus       224 ~i~~~  228 (233)
T d1v59a1         224 MLKTG  228 (233)
T ss_dssp             HHHHS
T ss_pred             HHccC
Confidence            98765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.80  E-value=0.012  Score=48.12  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=29.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +|.|||||.-|.+.|..|.+.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6999999999999999999999999999764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.78  E-value=0.054  Score=45.77  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHc--------------------CC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKE--------------------GH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~--------------------g~-~v~vie~~~   45 (454)
                      .++|+|||+|--++=+|+.|.+.                    |. +|+++.|+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            58999999999999999999873                    54 899999876

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.78  E-value=0.0078  Score=50.79  Aligned_cols=140  Identities=17%  Similarity=0.153  Sum_probs=90.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--------------------------Cccch-----------h--
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI--------------------------SEGLS-----------K--  246 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~--------------------------~~~~~-----------~--  246 (454)
                      ..|+|||+|+.|+++|..+++.|.+|+++++...-                          ...+.           .  
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            35899999999999999999999999999876421                          00000           0  


Q ss_pred             --------hhccCC-CeEEcCcee------EEecCC--cEEEe-CCCEEeeceEEEcc--------CcccCCcCC-----
Q 044575          247 --------VISKHN-NLHLHPQID------CLREDG--RVTFV-DGCWVTADTILYCT--------GYSYSFPFL-----  295 (454)
Q Consensus       247 --------~l~~~~-~i~~~~~v~------~v~~~~--~v~~~-dG~~i~~D~vI~at--------G~~~~~~~l-----  295 (454)
                              .+.+.. .......|+      ++....  .+... ++..+.+|.+|+|+        |++|+++.|     
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~  163 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQI  163 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTT
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhc
Confidence                    000000 000011121      122222  12222 23457788888885        888988754     


Q ss_pred             ----CCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCCC
Q 044575          296 ----DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       296 ----~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~~  355 (454)
                          +++|.|.+|++.+          |+.|++|++||+...+. .+.|..|++.+|.++.|+..
T Consensus       164 gv~~~~~G~I~vd~~~~----------T~~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~~  218 (223)
T d1ebda1         164 GIKMTNRGLIEVDQQCR----------TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPS  218 (223)
T ss_dssp             TCCBCTTSCBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             CceECCCCCEeECCCCC----------CCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence                3456666666555          66899999999987654 47899999999999999853

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.67  E-value=0.0092  Score=52.52  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhh-hcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVE-VAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~-~~~~V~l~~r~~~~  240 (454)
                      ...|+|||+|++|+.+|..|++ .|.+|+++++++.+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            3579999999999999999987 59999999998755

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.026  Score=41.84  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ...+|.|||||-=|...|.++.+.|+++.++|.++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346899999999999999999999999999998764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.022  Score=50.92  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEV--AKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~  238 (454)
                      .|+|||+|..|+-.|.++++.  +.+|.|++...
T Consensus         7 DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            599999999999999999987  56899998754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.022  Score=43.09  Aligned_cols=36  Identities=42%  Similarity=0.720  Sum_probs=32.1

Q ss_pred             CCCcEEEECcCh-----------HHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGP-----------SGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~-----------aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ..++|+|||+||           ++..|+++|++.|++++++..++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            458999999995           899999999999999999998763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.019  Score=46.36  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||+|-++-+++..|.+.|.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            35799999999999999999999999999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.36  E-value=0.023  Score=44.35  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=29.5

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      .+|.|||+|.-|.++|..|..++.  +++++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            589999999999999999999876  899999765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.28  E-value=0.16  Score=42.43  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=29.0

Q ss_pred             CCcEEEECcChHHHHHHHHHH--------------------HcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELR--------------------KEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~--------------------~~g~-~v~vie~~~   45 (454)
                      .++|+|||+|-.++=+|+.|+                    +.|. +|+++-|+.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            579999999999999999887                    4555 799999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.26  E-value=0.023  Score=44.31  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=29.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ++|.|||+|.-|.++|..|...+. +++++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999998876 999999765

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.20  E-value=0.054  Score=46.04  Aligned_cols=71  Identities=13%  Similarity=0.067  Sum_probs=54.7

Q ss_pred             CEEeeceEEEccCcccCCcC-----------------CCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-h
Q 044575          275 CWVTADTILYCTGYSYSFPF-----------------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-F  336 (454)
Q Consensus       275 ~~i~~D~vI~atG~~~~~~~-----------------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~  336 (454)
                      +.+++|.|+++||.+|...-                 +++.|.|.+|++.+          ++.|++|++||+...+. .
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~----------Ts~~~iyA~GDv~~~~~~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSK----------TNVDNIYAIGDVTDRVMLT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGGCSCCCH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccC----------cCCCCEEEEEECCCCccch
Confidence            35779999999999986431                 33456666666555          56899999999986654 4


Q ss_pred             hHHHHHHHHHHHHHcCCCC
Q 044575          337 PFFESQAKWIAQLLSGKRT  355 (454)
Q Consensus       337 ~~a~~qa~~~a~~i~g~~~  355 (454)
                      +.|..|++.+|+++.|..+
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            7999999999999988654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.19  E-value=0.026  Score=45.35  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ....|+|+|+|+-|+.++..++..|.+|+++++++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            34679999999999999998888999999999865

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.18  E-value=0.022  Score=44.67  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=29.7

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      ++|.|||+|.-|.++|..|...|.  +++++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            689999999999999999998875  899999754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.16  E-value=0.016  Score=48.06  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|+|||.|.-|+.+|..++ +|++|+.+|-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            6999999999999998776 699999999764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.15  E-value=0.013  Score=49.33  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             EEeeceEEEccCcccCCc---------C-------CCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhH
Q 044575          276 WVTADTILYCTGYSYSFP---------F-------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPF  338 (454)
Q Consensus       276 ~i~~D~vI~atG~~~~~~---------~-------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~  338 (454)
                      ++.++.+++|||.+|...         +       ++++|.|.+|++..          ++.|++|++||+...+. .+.
T Consensus       140 ~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~----------T~vpgiyA~GDv~~g~~l~~~  209 (229)
T d3lada1         140 VLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCA----------TSVPGVYAIGDVVRGAMLAHK  209 (229)
T ss_dssp             EECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHH
T ss_pred             eeecccccccCCcccccccccccccccchHhcCeeecCCCcEEeccccc----------CCCCCEEEEeCCcchHHHHHH
Confidence            355999999999887643         1       23455666666554          66799999999976654 478


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 044575          339 FESQAKWIAQLLSGKRT  355 (454)
Q Consensus       339 a~~qa~~~a~~i~g~~~  355 (454)
                      |..+++.+|..|+|+..
T Consensus       210 A~~~G~~aa~~i~g~~~  226 (229)
T d3lada1         210 ASEEGVVVAERIAGHKA  226 (229)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999988743

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.13  E-value=0.026  Score=44.31  Aligned_cols=35  Identities=31%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      ...+|.|||||.-|.++|..|...+.  +++++|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            35789999999999999999999875  899999764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.93  E-value=0.028  Score=45.18  Aligned_cols=35  Identities=17%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      +.++|+|||+|-++-+++..|.+.|. +|+|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            45789999999999999999999997 899998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.85  E-value=0.027  Score=45.33  Aligned_cols=34  Identities=38%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|+|+|+-|+.++..++..|.+|+++|+++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            4579999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.84  E-value=0.033  Score=44.23  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      .+++|.|||+|.-|-++|..|...|.  +++++|.++
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35799999999999999999999987  899999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.028  Score=45.28  Aligned_cols=34  Identities=35%  Similarity=0.511  Sum_probs=30.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            4579999999999999999999998 799999865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.031  Score=46.48  Aligned_cols=34  Identities=29%  Similarity=0.532  Sum_probs=31.0

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|+|+|| |.-|-.++.+|.++|++|+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            368999996 9999999999999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.78  E-value=0.028  Score=44.98  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...+|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            34679999999999999999998999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.69  E-value=0.027  Score=46.09  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             cEEEE-CcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVI-GAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvII-GaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|| |+|.-|.+.|+.|++.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999 679999999999999999999999865

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.024  Score=45.28  Aligned_cols=34  Identities=21%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|||+|..|.-+|..|++.|.+|+++.|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            6999999999999999999999999999997653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.046  Score=43.03  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      -+|+|+|.|.-|...+..|.+.|.+|+++|..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            469999999999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.021  Score=47.10  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      -|+|.|||+|..|..+|..++..|.+|+++.+++..
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI   39 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            379999999999999999999999999999987754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.35  E-value=0.042  Score=44.44  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=31.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+|.|||-|.-|...|++|.+.|++|.++|+++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999999865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.32  E-value=0.045  Score=42.57  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             cEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +|.|||||.-|.++|..|...+.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            69999999999999999999874  899999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.17  E-value=0.048  Score=42.43  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      .+|.|||+|.-|-++|..|...+.  +++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999886  899999764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.037  Score=37.90  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ++|.|||||-=|-..+....+.|+++.+++..+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999999999999999999999999997653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.14  E-value=0.045  Score=43.40  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +.+|.|||+|--|-++|..|...+.  +++++|.+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999876  899999764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.039  Score=43.92  Aligned_cols=32  Identities=34%  Similarity=0.455  Sum_probs=30.3

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|||-|.-|...|+.|++.|++|.++|+++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            59999999999999999999999999999865

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.05  E-value=0.042  Score=43.80  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|.|||-|--|...|++|.+.|++|.++|++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            469999999999999999999999999999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.01  E-value=0.028  Score=51.26  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=31.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|..|+-+|..|++.|.+|.++++...+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   37 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   37 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence            5899999999999999999999999999997654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.96  E-value=0.03  Score=51.23  Aligned_cols=34  Identities=12%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|..|+-+|..|++.|.+|.++++...+
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   42 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   42 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            5899999999999999999999999999997554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.92  E-value=0.064  Score=42.05  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      +.+|.|||+|.-|-++|..|.+.+. +++|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            3589999999999999988888775 899999765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.061  Score=43.71  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      +.++|+|||+|-+|-+++..|.+.|. +++++.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            35799999999999999999999987 799999865

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.88  E-value=0.025  Score=50.55  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~  240 (454)
                      .++.|+|||+|++|+..|..|++.  |.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            346799999999999999999965  8899999998765

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.038  Score=45.00  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=30.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccc
Confidence            4679999999999999999999997 799999865

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.69  E-value=0.053  Score=47.38  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+++|+|+|| |.-|-..+..|.+.|++|++++|++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            3578999998 9999999999999999999999865

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=92.69  E-value=0.037  Score=50.40  Aligned_cols=34  Identities=26%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|..|+=+|..|++.|.+|.++++.+..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            5999999999999999999999999999987543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.66  E-value=0.06  Score=42.71  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..++|+|||+|-.|-.+|++|...|. +++++.|+.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            46789999999999999999999998 699998863

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.064  Score=42.88  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|+|+|+.|+.++..++..|.++++++.++
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            4679999999999999999999999999998764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.56  E-value=0.057  Score=41.94  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=28.8

Q ss_pred             cEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +|.|||+|--|-++|..|...+.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            79999999999999999998875  899999764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.48  E-value=0.023  Score=46.62  Aligned_cols=35  Identities=11%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|.|||+|..|..+|..++..|.+|+++.+.+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHG   39 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            78999999999999999999999999999987653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.46  E-value=0.055  Score=42.20  Aligned_cols=32  Identities=38%  Similarity=0.550  Sum_probs=28.8

Q ss_pred             cEEEECc-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           14 NVCVIGA-GPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGa-G~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +|+|||| |.-|.++|..|...+.  +++++|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6999996 9999999999999885  999999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.45  E-value=0.055  Score=42.52  Aligned_cols=32  Identities=31%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|||.|--|...|+.|++.|++|+++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            69999999999999999999999999998765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.41  E-value=0.065  Score=38.43  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=33.3

Q ss_pred             hccCCCcEEEECcChHHHHH-HHHHHHcCCcEEEEeeCC
Q 044575            8 QCAQSKNVCVIGAGPSGLVA-ARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         8 ~~~~~~~VvIIGaG~aGl~a-A~~l~~~g~~v~vie~~~   45 (454)
                      .|...++|-+||-|=+|+++ |+.|.++|++|+--|...
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            45567899999999999999 888999999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.38  E-value=0.067  Score=43.23  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+|-|||-|.-|...|++|.+.|++|.++|++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            369999999999999999999999999999854

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.34  E-value=0.061  Score=47.27  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             CCCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++.+|+|+|| |.-|...+.+|.+.|++|+++.|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3567999997 9999999999999999999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.31  E-value=0.038  Score=49.81  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCHHHHHHHHh-----hhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELV-----EVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~-----~~~~~V~l~~r~~~~  240 (454)
                      .|+|||||++|+=+|..|+     +.|.+|++++|.+.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            5999999999999999997     458899999998765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.27  E-value=0.053  Score=43.65  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|+|+|-++-+++..|.+.+.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            45789999999999999999998888999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.17  E-value=0.02  Score=44.85  Aligned_cols=36  Identities=17%  Similarity=0.303  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~  240 (454)
                      .++|+|||+|..|.-+|..|+..+  .++.++.+....
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~   42 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDR   42 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccch
Confidence            468999999999999999999865  689999876543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.16  E-value=0.069  Score=41.33  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=28.5

Q ss_pred             cEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +|.|||+|--|.++|..|...+.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            79999999999999999988874  899999754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.13  E-value=0.032  Score=42.86  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |+++|+|.|..|..+|..|.+.|.+|++++..+..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~   35 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK   35 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHH
Confidence            67999999999999999999999999999886543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.12  E-value=0.073  Score=42.56  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      ++|+|||.|--|-+.|+.|++.|+  +|..+|++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            469999999999999999999986  688889864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.07  E-value=0.062  Score=41.82  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=28.4

Q ss_pred             cEEEECc-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 044575           14 NVCVIGA-GPSGLVAARELRKEGH--RVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGa-G~aGl~aA~~l~~~g~--~v~vie~~~   45 (454)
                      +|+|||| |.-|.++|..|...+.  +++++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999999998876  799999754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.03  E-value=0.064  Score=43.26  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=30.1

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            4679999999999999999999997 799999754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.95  E-value=0.044  Score=50.44  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhh------hcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVE------VAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~------~~~~V~l~~r~~~~  240 (454)
                      .|+|||||++|.-+|..|++      .|.+|.++++...+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            69999999999999999997      68899999998655

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.87  E-value=0.084  Score=42.50  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=37.3

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI  248 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l  248 (454)
                      +-+|+|+|+|..|...+....++|.+|++++.+......+..+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh
Confidence            46899999999999999999999999999998877655555443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=91.64  E-value=0.046  Score=49.07  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=29.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .|+|||+|++|+-.|..+++.|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            49999999999999999999999999998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.55  E-value=0.056  Score=41.34  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=31.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|+|+|+|..|..+|..|.+.|.+|+++++.+..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~   35 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDI   35 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhh
Confidence            6899999999999999999999999999986643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.54  E-value=0.084  Score=43.40  Aligned_cols=35  Identities=43%  Similarity=0.528  Sum_probs=29.6

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...+|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            45689999999999999999988877 788888754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.54  E-value=0.077  Score=43.43  Aligned_cols=46  Identities=17%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             CCCCCCeEEEEc-CCCCHHHHHHHHhhhcCeEEEecccCCcCccchh
Q 044575          201 EPFRNEVVVVVG-NSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK  246 (454)
Q Consensus       201 ~~~~~k~vvVVG-~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~  246 (454)
                      .+++||+++|.| +|-+|.++|..|++.|.+|+++.|+..-...+.+
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence            456899999999 5889999999999999999999998654333333

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.34  E-value=0.095  Score=41.67  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            4679999999999999999999999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.30  E-value=0.019  Score=48.87  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLS  234 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~  234 (454)
                      +|+|||+|.+|+-+|..|++.|.+|+++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            6999999999999999999998654433

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.29  E-value=0.031  Score=42.54  Aligned_cols=37  Identities=14%  Similarity=0.250  Sum_probs=27.5

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHc-CCcE-EEEeeCCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKE-GHRV-VVLEQNHDV   47 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v-~vie~~~~~   47 (454)
                      ++++|+|+|||-+|.+.+.++.+. ++++ ..||.++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            356899999999999999877543 6664 467765543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.28  E-value=0.094  Score=41.53  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCC
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~  239 (454)
                      ...+++|+|||+|.+|..++..|...+. +++++.|+..
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~   59 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYE   59 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHH
Confidence            3577999999999999999999999885 6999988744

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.14  E-value=0.025  Score=44.36  Aligned_cols=34  Identities=9%  Similarity=0.163  Sum_probs=28.5

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~  239 (454)
                      |+|+|||+|..|.-+|..|...+  .++.|+.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            78999999999999999888764  57888876544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.06  E-value=0.11  Score=41.84  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            4569999999999999999999985 899999865

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.00  E-value=0.086  Score=42.56  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=29.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|||+|-++-+++..|.+.| +|.|+.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            4688999999999999999997777 999999864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.83  E-value=0.12  Score=41.49  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+-|+.++..++..|. +|++.|.++
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            4579999999999999999999998 577777654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.1  Score=41.27  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+.||+|+|+|-|.+|-.+|..+...|.+|++.+..|
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4578999999999999999999999999999998865

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.48  E-value=0.13  Score=41.01  Aligned_cols=137  Identities=15%  Similarity=0.148  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTI  282 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v  282 (454)
                      ++++|+|+|+|-+|--++..|.+.| ++|+++.|+......+.+.+.          ...+.        .-...++|+|
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~----------~~~~~--------~~~~~~~Dli   77 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG----------YAYIN--------SLENQQADIL   77 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT----------CEEES--------CCTTCCCSEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh----------hhhhh--------cccccchhhh
Confidence            5689999999999999999999998 579999987653333322221          11111        1111358999


Q ss_pred             EEccC--cccCCcCCCCC-CceeeCCCCcccccCcccCCCCCCCce-----EecccccccchhHHHHHHHHHHHHHcCCC
Q 044575          283 LYCTG--YSYSFPFLDTK-GIVVVDDDRVGPLYEHTFPPSLAPSLS-----FVGIPRKLIGFPFFESQAKWIAQLLSGKR  354 (454)
Q Consensus       283 I~atG--~~~~~~~l~~~-g~i~v~~~~~~~~~~~~~~~~~~p~l~-----~iG~~~~~~~~~~a~~qa~~~a~~i~g~~  354 (454)
                      |-||-  ..++.+-.+-. .....+...  -.++-++.+.  ++-+     ..|.. ......+...||...-+.|.|..
T Consensus        78 INaTpiGm~~~~~~~~l~~~~~~~~~~~--~v~D~vY~P~--~T~ll~~A~~~G~~-~i~Gl~Mli~Qa~~~f~lwtg~~  152 (167)
T d1npya1          78 VNVTSIGMKGGKEEMDLAFPKAFIDNAS--VAFDVVAMPV--ETPFIRYAQARGKQ-TISGAAVIVLQAVEQFELYTHQR  152 (167)
T ss_dssp             EECSSTTCTTSTTTTSCSSCHHHHHHCS--EEEECCCSSS--SCHHHHHHHHTTCE-EECHHHHHHHHHHHHHHHHHSCC
T ss_pred             eeccccCCccccccccccccHhhcCCcc--eEEEEeeccC--CCHHHHHHHHCCCe-EEECHHHHHHHHHHHHHHHhCCC
Confidence            99985  33332111100 000000000  0122222221  1111     01211 12335578889999999999964


Q ss_pred             CCCCHHHHHHH
Q 044575          355 TLPSWDQMMQS  365 (454)
Q Consensus       355 ~lp~~~~~~~~  365 (454)
                        |+.+.|.+.
T Consensus       153 --~~~~~~~~a  161 (167)
T d1npya1         153 --PSDELIAEA  161 (167)
T ss_dssp             --CCHHHHHHH
T ss_pred             --CCHHHHHHH
Confidence              666655544

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.13  Score=40.59  Aligned_cols=36  Identities=33%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..-+.|+|||-|..|-.+|..++..|.+|+++|..+
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            346899999999999999999999999999999854

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.21  E-value=0.1  Score=42.06  Aligned_cols=147  Identities=14%  Similarity=0.222  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCC--CEEee
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDG--CWVTA  279 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG--~~i~~  279 (454)
                      +.++|+|+|+|+|-++--++..|.+.+ +|+++.|+..-...+.+.+......   ..+.      .+.+.+-  ...++
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~   84 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK---KFGE------EVKFSGLDVDLDGV   84 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC---CHHH------HEEEECTTCCCTTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhch---hhhh------hhhhhhhhhccchh
Confidence            357899999999999999999998766 8999999765433333222211000   0000      1222321  12348


Q ss_pred             ceEEEccCcc--cCCcC---CCCCCceeeCCCCcccccCcccCCCCCCCce-Ee----cccccccchhHHHHHHHHHHHH
Q 044575          280 DTILYCTGYS--YSFPF---LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLS-FV----GIPRKLIGFPFFESQAKWIAQL  349 (454)
Q Consensus       280 D~vI~atG~~--~~~~~---l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~-~i----G~~~~~~~~~~a~~qa~~~a~~  349 (454)
                      |.+|-||-.-  ++.+.   ++.. .+  ....  -.++-++.+.  ++-+ -.    |.. ......+...||...-+.
T Consensus        85 dliIn~tp~g~~~~~~~~~~~~~~-~~--~~~~--~v~D~~y~p~--~T~l~~~a~~~G~~-~i~Gl~MLv~Qa~~qf~l  156 (177)
T d1nvta1          85 DIIINATPIGMYPNIDVEPIVKAE-KL--REDM--VVMDLIYNPL--ETVLLKEAKKVNAK-TINGLGMLIYQGAVAFKI  156 (177)
T ss_dssp             CEEEECSCTTCTTCCSSCCSSCST-TC--CSSS--EEEECCCSSS--SCHHHHHHHTTTCE-EECTHHHHHHHHHHHHHH
T ss_pred             hhhccCCcccccccccccchhhhh-cc--Cccc--ceeeecCCcH--hHHHHHHHHHCCCc-ccCCHHHHHHHHHHHHHH
Confidence            9999998653  22221   1100 00  0000  1122222211  1100 00    111 122345778899888889


Q ss_pred             HcCCCCCCCHHHHHHHHHH
Q 044575          350 LSGKRTLPSWDQMMQSVKE  368 (454)
Q Consensus       350 i~g~~~lp~~~~~~~~~~~  368 (454)
                      |.|.  .|+.+.|.+.+.+
T Consensus       157 wtg~--~~~~~~~r~~l~~  173 (177)
T d1nvta1         157 WTGV--EPNIEVMKNAIID  173 (177)
T ss_dssp             HHSS--CCCHHHHHHHHHH
T ss_pred             HHCC--CCCHHHHHHHHHH
Confidence            9997  3677777776654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.09  E-value=0.16  Score=41.35  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=31.5

Q ss_pred             CCCcEEEEC-cChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIG-AGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIG-aG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|.| +|-.|..+|+.|++.|.+|++++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            468899999 58899999999999999999999975

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.01  E-value=0.065  Score=43.88  Aligned_cols=78  Identities=19%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCC--CEE-eeceE
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDG--CWV-TADTI  282 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG--~~i-~~D~v  282 (454)
                      ++|+|||+|.-|.-+|..|++.+.+|++..|.+.....+.+.   +.+....+.+. + .+ .+.+++.  +.+ .+|.|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~---~~n~~yl~~~~-l-~~-~i~~t~~l~~a~~~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK---RENVLFLKGVQ-L-AS-NITFTSDVEKAYNGAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH---TBCTTTSTTCB-C-CT-TEEEESCHHHHHTTCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc---ccccccccccc-c-cc-ccccchhhhhccCCCCEE
Confidence            579999999999999999999999999999865432222211   11111111111 1 22 2444433  223 38999


Q ss_pred             EEccCcc
Q 044575          283 LYCTGYS  289 (454)
Q Consensus       283 I~atG~~  289 (454)
                      |+|+...
T Consensus        82 iiavPs~   88 (189)
T d1n1ea2          82 LFVIPTQ   88 (189)
T ss_dssp             EECSCHH
T ss_pred             EEcCcHH
Confidence            9998654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=89.89  E-value=0.098  Score=47.53  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++|||+|..|+=+|..|++.+.+|.++++.+..
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~   37 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   37 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCCC
Confidence            5899999999999999999999999999998643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.87  E-value=0.13  Score=41.34  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            4579999999999999999999986 688888754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.86  E-value=0.15  Score=42.73  Aligned_cols=36  Identities=25%  Similarity=0.510  Sum_probs=32.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +.++|+|||+|.+|+-+|..+.+.+.+++++=+...
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            468999999999999999999999999888877653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.83  E-value=0.17  Score=45.71  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             ccCCCcEEEEC-cChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIG-AGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIG-aG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |.+.++|+|.| +|+-|-..+..|.++|++|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            55678899999 59999999999999999999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.68  E-value=0.15  Score=39.97  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |..-+.++|+|=|..|-.+|.+|+..|.+|+|.|..+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4456899999999999999999999999999999865

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=89.55  E-value=0.068  Score=47.94  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|||+|..|+-.|.++++.|.+|+|+++.+.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            489999999999999999999999999987543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.52  E-value=0.17  Score=39.01  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=27.3

Q ss_pred             cEEEEC-cChHHHHHHHHHHHcCC--cEEEEee
Q 044575           14 NVCVIG-AGPSGLVAARELRKEGH--RVVVLEQ   43 (454)
Q Consensus        14 ~VvIIG-aG~aGl~aA~~l~~~g~--~v~vie~   43 (454)
                      +|.||| +|.-|-++|..|...+.  +++++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999999876  7999995

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.29  E-value=0.16  Score=43.36  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~   44 (454)
                      ...+|+|||+|--|-.+|..|++.|. +++|+|..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            35789999999999999999999998 89999963

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.29  E-value=0.21  Score=44.86  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=31.7

Q ss_pred             CCCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +++.|+|+|| |.-|-..++.|.+.|++|+++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4688999997 9999999999999999999998754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.15  E-value=0.23  Score=40.01  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      ..|++|.|||.|.+|..+|..+..+|.+|+...|.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            578999999999999999999999999999998754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.07  E-value=0.2  Score=41.69  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      .+.+|+|.|||.||+..|..+.+.+. ++.++|+..
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            45789999999999999999999876 799999853

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.98  E-value=0.21  Score=39.90  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..+. +|++++.++
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            3569999999999999999998876 688888765

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.88  E-value=0.2  Score=39.10  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=29.2

Q ss_pred             cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~   45 (454)
                      +|.+||+|--|-+.|+.|.+.| .+|.++++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            6999999999999999998887 8999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.24  Score=43.50  Aligned_cols=45  Identities=27%  Similarity=0.493  Sum_probs=38.3

Q ss_pred             cCCCCCCCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCc
Q 044575          196 IYRVPEPFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       196 ~~~~~~~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|..+..++||.++|.|++. +|..+|..|++.|.+|.+..|+..-
T Consensus         3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLER   48 (297)
T ss_dssp             CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            46677788999999998765 8999999999999999999987544

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.18  Score=34.30  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      |+|.|+|+|.-|..++.+..++|.+|.++...+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999987554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.47  E-value=0.22  Score=42.67  Aligned_cols=40  Identities=23%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      +++||.|+|.||+. +|.++|..|++.|.+|.++.|+..-.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~   42 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP   42 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH
Confidence            46789999998875 89999999999999999998876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.44  E-value=0.29  Score=39.09  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=27.6

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEE-EEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVV-VLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~-vie~~~   45 (454)
                      ..+|+|+|+|+.|+.++..++..|.+++ +.|.++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            4679999999999999999998888654 556543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.31  E-value=0.12  Score=40.04  Aligned_cols=76  Identities=20%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             CeEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEE-eeceE
Q 044575          206 EVVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWV-TADTI  282 (454)
Q Consensus       206 k~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i-~~D~v  282 (454)
                      ++|+|||+|..|..+|..+...  ..++.|+.+.+.........+......  ...+. +      ...+-+.. .+|.|
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~--~~~~~-~------~~~~~~~~~~adiv   72 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPF--MGQMS-L------YAGDYSDVKDCDVI   72 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCC--TTCEE-E------C--CGGGGTTCSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCccc--CCCee-E------eeCcHHHhCCCceE
Confidence            4799999999999999998876  458999998776544333323211110  11111 1      11111223 39999


Q ss_pred             EEccCccc
Q 044575          283 LYCTGYSY  290 (454)
Q Consensus       283 I~atG~~~  290 (454)
                      |++.|...
T Consensus        73 vitag~~~   80 (142)
T d1y6ja1          73 VVTAGANR   80 (142)
T ss_dssp             EECCCC--
T ss_pred             EEeccccc
Confidence            99998653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.07  E-value=0.2  Score=39.07  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +|.|||+|--|-+.|..|.+.++++++.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            69999999999999999999999999999864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.04  E-value=0.14  Score=44.24  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             CcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|.|| |+-|-..+..|.++|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            36999998 9999999999999999999999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.03  E-value=0.19  Score=39.37  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+.||+++|+|-|..|--+|..+...|.+|++.+..|
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4578999999999999999999999999999998866

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=87.97  E-value=0.25  Score=39.88  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCcC
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNIS  241 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~~  241 (454)
                      +.++|+|+|+|+|-+|--++..|...+. +++++.|++...
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~   55 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFF   55 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHH
Confidence            4578999999999999999999998764 799999976543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.88  E-value=0.14  Score=41.43  Aligned_cols=34  Identities=15%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             eEEEE-cCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVV-GNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVV-G~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +|.|| |+|..|.-+|..|++.|.+|++..|++.-
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58899 66999999999999999999999997654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=87.87  E-value=0.19  Score=39.19  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=28.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~  239 (454)
                      +|.+||+|..|.-++..|.+.+ .+|++..|++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            5899999999999999888776 78999888764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.82  E-value=0.18  Score=40.65  Aligned_cols=31  Identities=26%  Similarity=0.476  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS  237 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~  237 (454)
                      +|.|||+|..|.-+|..|++.+.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.73  E-value=0.23  Score=39.18  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK  246 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~  246 (454)
                      ++.+|+|+|+|..|...+....+.|.+|++++.+......+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~   73 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET   73 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHH
Confidence            3479999999999999999999999999999987654444433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.42  E-value=0.24  Score=42.51  Aligned_cols=40  Identities=18%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|.++.|+....
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            36789999998875 89999999999999999999977543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.36  Score=40.92  Aligned_cols=92  Identities=13%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             CCCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCC-CeE-EcCceeEEec-CC---cEEEeC
Q 044575          201 EPFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLH-LHPQIDCLRE-DG---RVTFVD  273 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~-~i~-~~~~v~~v~~-~~---~v~~~d  273 (454)
                      +...||.++|.|++. +|.++|..+++.|.+|.++.|+..-...+.+.+...+ ++. ..+.+++.+. ..   .+.-..
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            456899999988876 8999999999999999999997654333433333222 211 1122221100 00   010111


Q ss_pred             CCEEeeceEEEccCcccCCcCC
Q 044575          274 GCWVTADTILYCTGYSYSFPFL  295 (454)
Q Consensus       274 G~~i~~D~vI~atG~~~~~~~l  295 (454)
                      |   ..|.+|.+.|.....++.
T Consensus        83 g---~idilinnag~~~~~~~~  101 (244)
T d1yb1a_          83 G---DVSILVNNAGVVYTSDLF  101 (244)
T ss_dssp             C---CCSEEEECCCCCCCCCCG
T ss_pred             C---CCceeEeecccccccccc
Confidence            2   389999999988665554

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.11  E-value=0.48  Score=35.36  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCC-----------CHHHHHHHHhhhcCeEEEecccCCc
Q 044575          204 RNEVVVVVGNSL-----------SGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       204 ~~k~vvVVG~G~-----------sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..|+|+|+|+|+           +++..+.+|.+.|.++.++...+.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            348999999998           5778888999999999999877653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.08  E-value=0.29  Score=38.95  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|+.|+.++..++..|. .|+++++++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            4679999999999999999988886 667777654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.65  E-value=0.33  Score=41.37  Aligned_cols=41  Identities=24%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCC---CCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575          202 PFRNEVVVVVGNS---LSGQDISMELVEVAKEVHLSAKSLNISE  242 (454)
Q Consensus       202 ~~~~k~vvVVG~G---~sg~e~A~~l~~~~~~V~l~~r~~~~~~  242 (454)
                      +++||.++|.|++   -+|..+|..|++.|.+|.+..|.+....
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~   48 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRP   48 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence            4578999999975   3899999999999999999888765433

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.64  E-value=0.35  Score=37.32  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=26.1

Q ss_pred             cEEEEC-cChHHHHHHHHHHHc-C--CcEEEEeeCC
Q 044575           14 NVCVIG-AGPSGLVAARELRKE-G--HRVVVLEQNH   45 (454)
Q Consensus        14 ~VvIIG-aG~aGl~aA~~l~~~-g--~~v~vie~~~   45 (454)
                      +|.||| +|.-|-++|..|..+ +  .++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            799999 599999999888643 3  5899999754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.23  Score=42.40  Aligned_cols=47  Identities=9%  Similarity=0.134  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEcCCC---CHHHHHHHHhhhcCeEEEecccCCcCccchhhh
Q 044575          202 PFRNEVVVVVGNSL---SGQDISMELVEVAKEVHLSAKSLNISEGLSKVI  248 (454)
Q Consensus       202 ~~~~k~vvVVG~G~---sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l  248 (454)
                      .++||+++|.|++-   +|..+|..|++.|.+|++..|++.......+..
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~   51 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFA   51 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHH
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            35789999998764   678999999999999999999876544444433

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=86.57  E-value=0.17  Score=46.34  Aligned_cols=42  Identities=17%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCCCCCCCC--eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575          198 RVPEPFRNE--VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN  239 (454)
Q Consensus       198 ~~~~~~~~k--~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~  239 (454)
                      .++++..++  .++|||+|.+|+=+|..|++.+ .+|.++++.+.
T Consensus         8 ~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1           8 TDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            345555555  6899999999999999999876 68999998864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.44  E-value=0.26  Score=40.37  Aligned_cols=37  Identities=24%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      +..|++|.|||-|.+|.++|..+..+|.+|....+..
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            4578999999999999999999999999998876543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.41  E-value=0.41  Score=38.45  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=32.1

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..++|.|||.|..|-..|+.++..|.+|..+++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            45789999999999999999999999999999864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.39  E-value=0.36  Score=40.85  Aligned_cols=38  Identities=8%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|++..|+..
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46789999998876 899999999999999999998764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=86.34  E-value=0.33  Score=39.49  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+..|++|.|||.|.+|-++|..+..+|.+|....+..
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            45688999999999999999999999999999887754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.29  E-value=0.38  Score=38.33  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=29.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ...|+|+|+|..|+.++..++..|. +|++++.++
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            3569999999999999999999985 888888754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.24  E-value=0.32  Score=38.55  Aligned_cols=39  Identities=15%  Similarity=-0.020  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..+|++|+|+|+|.+|.=.+..+...|.+|+.+.+++..
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            346899999999999988887777889999998887653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=86.23  E-value=0.26  Score=44.31  Aligned_cols=32  Identities=25%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++|||+|..|+-+|..|++. .+|.++++.+.
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            799999999999999999986 88999998863

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.16  E-value=0.37  Score=43.06  Aligned_cols=35  Identities=29%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             CCCcEEEEC-cChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIG-AGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIG-aG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|+|.| +|+-|-.++..|.++|++|..+++..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            358999999 58999999999999999999999864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=0.58  Score=36.79  Aligned_cols=37  Identities=24%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+.||+|+|||.+. .|.-+|..|.+.+..||+++...
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            46899999999887 89999999999999999987643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.08  E-value=0.62  Score=36.87  Aligned_cols=38  Identities=13%  Similarity=0.114  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccC
Q 044575          201 EPFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+.+||+++|||-+. .|.-+|..|++.+..|++++...
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~   63 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN   63 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence            467899999999775 59999999999999999988643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.05  E-value=0.41  Score=40.82  Aligned_cols=38  Identities=16%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +++||.++|.|++. +|.++|..|++.|.+|.+..|+..
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56899999998864 888999999999999999998654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=86.01  E-value=0.21  Score=45.73  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             CCCCCCCCC--eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575          198 RVPEPFRNE--VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN  239 (454)
Q Consensus       198 ~~~~~~~~k--~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~  239 (454)
                      .+++...++  .++|||+|.+|+=+|..|++.+ .+|.++++.+.
T Consensus        15 ~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          15 SDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            345555665  5899999999999999999987 59999999864

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.62  Score=36.84  Aligned_cols=38  Identities=24%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++.||+|+|||.+. .|.-+|..|.+.+..|++++....
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~   74 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA   74 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEecccc
Confidence            56899999999876 899999999999999999987553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.79  E-value=0.29  Score=40.14  Aligned_cols=38  Identities=16%  Similarity=0.059  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+..+++|.|||.|.+|.++|..+..+|.+|....+..
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            34578999999999999999999999999999887643

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.76  E-value=0.5  Score=34.86  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCC-----------CHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVGNSL-----------SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~-----------sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .|+|+|+|+|+           +++.++.+|.+.|.++.++...+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            47899999997           477788889999999999987765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.66  E-value=0.25  Score=37.28  Aligned_cols=32  Identities=38%  Similarity=0.583  Sum_probs=27.1

Q ss_pred             CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      ++|+|+|.|..|..++..|+  +.+|+++|..+.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            46999999999999999985  557889998664

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=85.44  E-value=0.37  Score=41.25  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             cCCCcEEEECc-Ch--HHHHHHHHHHHcCCcEEEEeeCC
Q 044575           10 AQSKNVCVIGA-GP--SGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        10 ~~~~~VvIIGa-G~--aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+.+.++|.|| |-  -|.++|+.|+++|.+|++.+++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            35678999995 54  57888999999999999988753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.39  Score=42.20  Aligned_cols=32  Identities=28%  Similarity=0.498  Sum_probs=29.2

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEee
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQ   43 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~   43 (454)
                      +++|+|.|| |+-|-..+.+|.++|++|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            378999997 88999999999999999999986

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.25  E-value=0.44  Score=40.96  Aligned_cols=43  Identities=7%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcCC---CCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575          203 FRNEVVVVVGNS---LSGQDISMELVEVAKEVHLSAKSLNISEGLS  245 (454)
Q Consensus       203 ~~~k~vvVVG~G---~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~  245 (454)
                      ++||+++|.|++   -+|..+|..|++.|.+|++..|++.......
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~   48 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVR   48 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            578999999964   3899999999999999999999865443333

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.12  E-value=0.62  Score=34.00  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ..+|.|+|||.-|..+|.+..+.|.+|.++.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46899999999999999999999999999987654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.12  E-value=0.46  Score=40.62  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhc
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVIS  249 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~  249 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|.++.|+..-.....+.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~   50 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR   50 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            46889999998765 8889999999999999999987654434444443

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.09  E-value=0.24  Score=44.33  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhh----hcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVE----VAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~----~~~~V~l~~r~~  238 (454)
                      .|+|||+|.+|+=.|..+++    .|.+|.++++.+
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            59999999999888888765    578999998754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.25  Score=42.61  Aligned_cols=41  Identities=27%  Similarity=0.480  Sum_probs=34.6

Q ss_pred             CCCCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCc
Q 044575          200 PEPFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       200 ~~~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +..++||+++|.|++. +|..+|..|++.|.+|.++.|+..-
T Consensus         9 ~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_           9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3446889999998865 8999999999999999999997643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.93  E-value=0.28  Score=43.88  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             CCCCeEEEEc-CCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          203 FRNEVVVVVG-NSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       203 ~~~k~vvVVG-~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +++|+|+|.| +|.+|..++..|.+.|.+|+.+.|...-
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            5789999998 5799999999999999999999986654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.89  E-value=0.46  Score=41.33  Aligned_cols=40  Identities=15%  Similarity=0.201  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEEcCC---CCHHHHHHHHhhhcCeEEEecccCC
Q 044575          200 PEPFRNEVVVVVGNS---LSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       200 ~~~~~~k~vvVVG~G---~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +-+++||+++|.|++   -+|..+|..|++.|.+|.+..|.+.
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            345789999999986   4899999999999999999988654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.80  E-value=0.48  Score=40.02  Aligned_cols=38  Identities=18%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +++||+++|.|++. +|..+|..|++.|.+|.++.|+..
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36899999998764 888999999999999999998753

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.76  E-value=0.25  Score=41.22  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=53.1

Q ss_pred             EEeeceEEEccCcccCCcC--------CC--------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhH
Q 044575          276 WVTADTILYCTGYSYSFPF--------LD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPF  338 (454)
Q Consensus       276 ~i~~D~vI~atG~~~~~~~--------l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~  338 (454)
                      .+++|.|++++|.+|..+.        |.        ++|.|.+|++.+          ++.|++|++||+...+. .+.
T Consensus       149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~----------T~~~~iyAvGDv~~~~~l~~~  218 (238)
T d1aoga1         149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSR----------TNVSNIYAIGDVTNRVMLTPV  218 (238)
T ss_dssp             EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCB----------CSSTTEEECGGGGTSCCCHHH
T ss_pred             cccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCee----------eccCCEEEEEEecCCccchhh
Confidence            4678888888877755332        21        356777888776          67899999999986653 479


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 044575          339 FESQAKWIAQLLSGKRT  355 (454)
Q Consensus       339 a~~qa~~~a~~i~g~~~  355 (454)
                      |..|++.+|+.+.|..+
T Consensus       219 A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         219 AINEAAALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999988643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=84.45  E-value=0.41  Score=41.18  Aligned_cols=91  Identities=11%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeE-EcCceeEEecCCcEEEeC--CCEE
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLH-LHPQIDCLREDGRVTFVD--GCWV  277 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~-~~~~v~~v~~~~~v~~~d--G~~i  277 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|.++.|+........+.+.....+. ....+...+.-..+ ++.  .+.-
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~-~~~~~~~~g   81 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNL-VDTTIAKHG   81 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHH-HHHHHHHHS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHH-HHHHHHHcC
Confidence            46889999988754 8899999999999999999987654444444443332221 11111110000000 000  0001


Q ss_pred             eeceEEEccCcccCCc
Q 044575          278 TADTILYCTGYSYSFP  293 (454)
Q Consensus       278 ~~D~vI~atG~~~~~~  293 (454)
                      ..|.+|.+.|.....+
T Consensus        82 ~iD~lVnnAG~~~~~~   97 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTP   97 (268)
T ss_dssp             CCCEEEECCCCCCSSC
T ss_pred             CcceeccccccccCCC
Confidence            4799999999765443

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.27  Score=43.15  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=28.5

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|||+|.+|+=.|.++++.+ +|.+++..+..
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             CEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            5999999999999999988877 89999886543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.29  E-value=0.4  Score=41.01  Aligned_cols=37  Identities=14%  Similarity=0.071  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEcC-CC--CHHHHHHHHhhhcCeEEEecccC
Q 044575          202 PFRNEVVVVVGN-SL--SGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       202 ~~~~k~vvVVG~-G~--sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .++||+++|.|+ |.  +|..+|..|++.|.+|.+..|..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            357899999995 43  78999999999999999988764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=84.25  E-value=0.35  Score=38.27  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ..+++|+|+|+|.+|.=.+..+...|.+|+.+.+++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            3678999999999999999888888999999987654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.23  E-value=0.46  Score=40.78  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             CCCcEEEECcC---hHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAG---PSGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG---~aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +.+.++|.||+   =-|.+.|+.|+++|++|++.++++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45789999973   2688999999999999999998653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=84.06  E-value=0.48  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             CeEEEEcC-CCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGN-SLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~-G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++|+|+|| |.+|..++..|.+.|.+|+.+.|....
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            57999996 999999999999999999999987543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.89  E-value=0.45  Score=40.96  Aligned_cols=35  Identities=9%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CeEEEEcC-CCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          206 EVVVVVGN-SLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       206 k~vvVVG~-G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      |+|+|.|| |.+|..++..|.+.|.+|+.+.|.+..
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            78999997 999999999999999999999997654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.80  E-value=0.58  Score=38.20  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||.|-.|-.+|+.|...|.+|..+|+..
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCcc
Confidence            4789999999999999999999999999999854

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.47  Score=42.12  Aligned_cols=31  Identities=32%  Similarity=0.513  Sum_probs=28.5

Q ss_pred             cEEEECc-ChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           14 NVCVIGA-GPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        14 ~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +|+|+|| |+-|-..++.|++.|++|+++++-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            5999997 899999999999999999999863

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=83.74  E-value=0.44  Score=38.20  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCc
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNI  240 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~  240 (454)
                      .+|++|+|+|+|++|.-.+..+...|. +|+.+.+++..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccc
Confidence            468999999999999888888888886 78998876543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.71  E-value=0.39  Score=40.92  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=29.1

Q ss_pred             CCCcEEEECcCh---HHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGAGP---SGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGaG~---aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.+.++|.||+-   -|.+.|+.|++.|++|++.++++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            357789999743   58999999999999999988764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.65  Score=39.18  Aligned_cols=40  Identities=18%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNIS  241 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~  241 (454)
                      ..+||.++|.|++. +|..+|..|++.|.+|.++.|+..-.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~   42 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG   42 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            35789999998765 88999999999999999999876543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=83.58  E-value=0.4  Score=37.68  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      +|.|||.|..|.-+|..|.+.|.+|+...|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            68999999999999999999999999988864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.55  E-value=0.44  Score=40.12  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++||+++|.|++. +|..+|..|++.|.+|.+..|+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            46889999988875 899999999999999999998764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.49  E-value=0.5  Score=38.62  Aligned_cols=36  Identities=14%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575          201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK  236 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r  236 (454)
                      ..++|++|+|.|-|..|..+|..|.+.|.+|++...
T Consensus        23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          23 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            457899999999999999999999999999987764

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=83.28  E-value=0.56  Score=39.04  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcC-----------------CCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGN-----------------SLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~-----------------G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +++|++|+|-+|                 |..|.++|.++...|.+|++++....
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~   57 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS   57 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccc
Confidence            567888888766                 55799999999999999999987554

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.24  E-value=0.62  Score=38.02  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575           11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN   44 (454)
Q Consensus        11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~   44 (454)
                      +.++|+|.|-|-.|..+|+.|.+.|.+|++.|.+
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            4578999999999999999999999999998863

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.17  E-value=1.6  Score=36.37  Aligned_cols=36  Identities=33%  Similarity=0.527  Sum_probs=29.9

Q ss_pred             CCCcEEEECcCh-HHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGP-SGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~-aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +.+.++|-||+- -|.++|+.|++.|++|++.+++..
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            346788888774 788999999999999999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.15  E-value=0.71  Score=40.04  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=27.1

Q ss_pred             CcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      +.++|-|| |--|.++|+.|++.|.+|++.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            55666664 4568899999999999999999865

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.10  E-value=0.16  Score=39.09  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=26.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~  239 (454)
                      +|.|||+|..|.-+|..+...  ..++.|+...+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~   36 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKK   36 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            689999999999999988765  468888886543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.43  Score=39.03  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             CCeEEEEcC-CCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          205 NEVVVVVGN-SLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       205 ~k~vvVVG~-G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .|+|+|+|+ |.+|..++.+|.+.|.+|+.+.|++.-
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~   39 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh
Confidence            478999995 899999999999999999999997643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.69  E-value=0.5  Score=39.05  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEe
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLE   42 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie   42 (454)
                      .++|+|.|| |.-|...++.|.+.|+++.+++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            368999995 9999999999999998766655

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.68  E-value=0.65  Score=39.13  Aligned_cols=37  Identities=8%  Similarity=0.151  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          203 FRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       203 ~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++||.++|.|++. +|.++|..|++.|.+|.+..|+..
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999998754 899999999999999999998754

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=82.62  E-value=0.79  Score=36.94  Aligned_cols=40  Identities=13%  Similarity=0.068  Sum_probs=34.9

Q ss_pred             CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          200 PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       200 ~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ..+..++++.|||.|.+|.++|..+..++.+|....+...
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            3456789999999999999999999999999999887543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.62  E-value=0.63  Score=36.86  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+|+|+|| |+.|+.+..-++..|.+|+++..++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccc
Confidence            457999996 9999999999988999999888644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=82.57  E-value=0.66  Score=39.53  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCC-CeE-EcCceeEEecCCcEEEeC-CCE--
Q 044575          203 FRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLH-LHPQIDCLREDGRVTFVD-GCW--  276 (454)
Q Consensus       203 ~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~-~i~-~~~~v~~v~~~~~v~~~d-G~~--  276 (454)
                      ++||+++|.|++. +|.++|..|++.|.+|.++.|++.......+.+.+.. .+. ....+.+-+.-..+ +.. -+.  
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~-~~~~~~~~~   82 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKL-MQTVAHVFD   82 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH-HHHHHHHTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHH-HHHHHHHhC
Confidence            5789999998754 7889999999999999999997654433434443322 111 11221111000000 000 001  


Q ss_pred             EeeceEEEccCcccCCcCCC
Q 044575          277 VTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       277 i~~D~vI~atG~~~~~~~l~  296 (454)
                      ...|.+|.+.|..+..++.+
T Consensus        83 g~idilinnag~~~~~~~~~  102 (258)
T d1ae1a_          83 GKLNILVNNAGVVIHKEAKD  102 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTT
T ss_pred             CCcEEEeccccccccCcccc
Confidence            24788999999887766643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.52  E-value=0.99  Score=31.83  Aligned_cols=80  Identities=11%  Similarity=0.027  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEEcCCCCHHHH-HHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEee
Q 044575          201 EPFRNEVVVVVGNSLSGQDI-SMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA  279 (454)
Q Consensus       201 ~~~~~k~vvVVG~G~sg~e~-A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~  279 (454)
                      ...+.+++-+||-|-+|+-. |..|.+.|.+|+-..+..  .+....+......+.....-.             ..-.+
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~--~~~~~~L~~~Gi~v~~g~~~~-------------~i~~~   68 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD--GVVTQRLAQAGAKIYIGHAEE-------------HIEGA   68 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC--SHHHHHHHHTTCEEEESCCGG-------------GGTTC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC--ChhhhHHHHCCCeEEECCccc-------------cCCCC
Confidence            34466899999999999765 899999999999988753  222333322222222211110             01137


Q ss_pred             ceEEEccCcccCCcCC
Q 044575          280 DTILYCTGYSYSFPFL  295 (454)
Q Consensus       280 D~vI~atG~~~~~~~l  295 (454)
                      |+||+.++...+.|.+
T Consensus        69 d~vV~S~AI~~~npel   84 (96)
T d1p3da1          69 SVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             SEEEECTTSCTTCHHH
T ss_pred             CEEEECCCcCCCCHHH
Confidence            8999999988765543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.37  E-value=0.69  Score=39.24  Aligned_cols=39  Identities=28%  Similarity=0.383  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCc
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      +++||.++|.|++. +|..+|..|++.|.+|.+..|+..-
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            35789999998765 8889999999999999999987543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=82.37  E-value=0.42  Score=37.03  Aligned_cols=35  Identities=14%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             CCeEEEEc-CCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          205 NEVVVVVG-NSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       205 ~k~vvVVG-~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      -++|.||| .|..|.-+|..|.+.|.+|++..|...
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            37999999 699999999999999999999988653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.35  E-value=0.74  Score=36.20  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGH-RVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~-~v~vie~~~   45 (454)
                      ..+|+|+|+ |+.|+.++..++..|. +|++++.++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            457999995 9999999999998885 888998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.30  E-value=0.46  Score=37.32  Aligned_cols=37  Identities=11%  Similarity=-0.099  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++++|+|+|+|.+|.=.+..+...|.+|+.+.+++.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            3678999999999999888888888999999887654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=82.24  E-value=0.77  Score=37.32  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .++|.|||-|.-|-..|+.|...|.+|..+|+..
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            5789999999999999999999999999998753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.95  E-value=0.71  Score=37.65  Aligned_cols=33  Identities=18%  Similarity=0.037  Sum_probs=29.7

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +|.|||.|..|.-+|..+++.|.+|+.+.....
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999886543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.84  E-value=1.2  Score=34.12  Aligned_cols=39  Identities=31%  Similarity=0.469  Sum_probs=30.4

Q ss_pred             CcEEEECc-ChHHHHHHHHHHHcC---CcEEEEeeCCCCCccc
Q 044575           13 KNVCVIGA-GPSGLVAARELRKEG---HRVVVLEQNHDVGGQW   51 (454)
Q Consensus        13 ~~VvIIGa-G~aGl~aA~~l~~~g---~~v~vie~~~~~GG~w   51 (454)
                      .+|.|||| |..|....+-|.+++   .++..+-.+...|-..
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i   45 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM   45 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce
Confidence            57999999 999999999997654   4788887666555443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.81  E-value=0.47  Score=43.77  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=30.5

Q ss_pred             CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeC
Q 044575           12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQN   44 (454)
Q Consensus        12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~   44 (454)
                      ..+|+|||+|--|..+|+.|...|. +++|+|..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4689999999999999999999998 89999974

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.79  E-value=0.71  Score=38.62  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccC
Q 044575          203 FRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSL  238 (454)
Q Consensus       203 ~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~  238 (454)
                      .+||+++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999998754 89999999999999999999864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.72  E-value=0.56  Score=40.00  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             CCCCCeEEEEcCC-CCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCC---CeE-EcCceeEEecCC----cEEEe
Q 044575          202 PFRNEVVVVVGNS-LSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN---NLH-LHPQIDCLREDG----RVTFV  272 (454)
Q Consensus       202 ~~~~k~vvVVG~G-~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~---~i~-~~~~v~~v~~~~----~v~~~  272 (454)
                      .++||.++|.|++ -+|.++|..|++.|.+|.+..|+..-...+.+.+.+..   ++. ....+..-+.-.    .+.-.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            4688989998875 47889999999999999999987543333333333221   111 122221100000    00000


Q ss_pred             CCCEEeeceEEEccCcccCCcCCC
Q 044575          273 DGCWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       273 dG~~i~~D~vI~atG~~~~~~~l~  296 (454)
                      -|   ..|.+|.+.|..+..++.+
T Consensus        87 ~g---~iD~lVnnAg~~~~~~~~~  107 (257)
T d1xg5a_          87 HS---GVDICINNAGLARPDTLLS  107 (257)
T ss_dssp             HC---CCSEEEECCCCCCCCCTTT
T ss_pred             cC---CCCEEEecccccCCCcccc
Confidence            11   3699999999887655543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.57  E-value=0.71  Score=40.35  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           13 KNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        13 ~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ++|+|.|| |+-|-.++..|.++|++|..+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57999998 8999999999999999999999865

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.42  E-value=0.46  Score=40.42  Aligned_cols=92  Identities=14%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeE-EcCceeEEecCC----cEEEeCCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLH-LHPQIDCLREDG----RVTFVDGC  275 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~-~~~~v~~v~~~~----~v~~~dG~  275 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|+........+.+....++. ....+.+-..-.    .+.-.-| 
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G-   81 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG-   81 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhC-
Confidence            46788888887654 7889999999999999999987654443433333222221 111111100000    0000002 


Q ss_pred             EEeeceEEEccCcccCCcCCC
Q 044575          276 WVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       276 ~i~~D~vI~atG~~~~~~~l~  296 (454)
                        ..|.+|.+.|..+..++.+
T Consensus        82 --~iDiLVnnAg~~~~~~~~~  100 (251)
T d1zk4a1          82 --PVSTLVNNAGIAVNKSVEE  100 (251)
T ss_dssp             --SCCEEEECCCCCCCCCTTT
T ss_pred             --CceEEEeccccccccchhc
Confidence              3799999999988766654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.24  E-value=0.86  Score=38.46  Aligned_cols=38  Identities=11%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            46789888888764 888999999999999999988653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.24  E-value=0.66  Score=40.30  Aligned_cols=40  Identities=13%  Similarity=0.414  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcC-CCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          201 EPFRNEVVVVVGN-SLSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       201 ~~~~~k~vvVVG~-G~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..++||.++|.|+ +-+|..+|..|++.|.+|++..|+..-
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            3678999999985 558889999999999999999987643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=81.05  E-value=0.81  Score=38.96  Aligned_cols=93  Identities=13%  Similarity=0.040  Sum_probs=54.5

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCC-CeE-EcCceeEEecCC----cEEEeCC
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHN-NLH-LHPQIDCLREDG----RVTFVDG  274 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~-~i~-~~~~v~~v~~~~----~v~~~dG  274 (454)
                      +++||.++|.|++. +|..+|..|++.|.+|.+..|+........+.+.... +.. ....+.....-.    .+.-.-|
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            35789999998864 8889999999999999999987554333333333222 111 111111100000    0000001


Q ss_pred             CEEeeceEEEccCcccCCcCCC
Q 044575          275 CWVTADTILYCTGYSYSFPFLD  296 (454)
Q Consensus       275 ~~i~~D~vI~atG~~~~~~~l~  296 (454)
                        -..|.+|.+.|..+..++.+
T Consensus        85 --~~idilvnnAG~~~~~~~~~  104 (259)
T d2ae2a_          85 --GKLNILVNNAGIVIYKEAKD  104 (259)
T ss_dssp             --TCCCEEEECCCCCCCCCGGG
T ss_pred             --CCceEEEECCceeccCcccc
Confidence              14799999999887666543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.03  E-value=0.79  Score=38.35  Aligned_cols=36  Identities=17%  Similarity=-0.031  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          204 RNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       204 ~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      +||+|+|.|++- +|..+|..|++.|.+|.++.+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            479999998854 899999999999999999877543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.98  E-value=0.75  Score=40.71  Aligned_cols=35  Identities=29%  Similarity=0.227  Sum_probs=30.6

Q ss_pred             CCCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           11 QSKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        11 ~~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ..+.|+|.|| |+-|-..+.+|.+.|++|+.+|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4578899886 8999999999999999999999743

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.96  E-value=0.88  Score=38.44  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCC-CCHHHHHHHHhhhcCeEEEecccCC
Q 044575          202 PFRNEVVVVVGNS-LSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       202 ~~~~k~vvVVG~G-~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      .++||.++|.|++ -+|.++|..|++.|.+|.+..|++.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999998854 4788999999999999999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=80.94  E-value=0.55  Score=39.68  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=30.3

Q ss_pred             CCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEeccc
Q 044575          203 FRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKS  237 (454)
Q Consensus       203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~  237 (454)
                      .++++|+|||.|-.|.++|..|++.|. +++++...
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            356899999999999999999999985 78888754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.93  E-value=0.61  Score=38.16  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=27.3

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCC--cEEEEeeC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGH--RVVVLEQN   44 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~--~v~vie~~   44 (454)
                      .++|+|+|| |+-|-..++.|.+.|.  +|+++-|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            379999999 9999999999999987  45555443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.79  E-value=0.88  Score=38.05  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=29.6

Q ss_pred             CCcEEEECcCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGP-SGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~-aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+.|+|.||+- -|.+.|+.|+++|++|+++++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999964 68999999999999999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.69  E-value=0.85  Score=38.80  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCc
Q 044575          203 FRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       203 ~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ++||.++|.|++. +|..+|..|++.|.+|.+..|+...
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            6789888888764 7889999999999999999987654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.65  E-value=0.74  Score=38.98  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CCCcEEEECcCh---HHHHHHHHHHHcCCcEEEEeeCCC
Q 044575           11 QSKNVCVIGAGP---SGLVAARELRKEGHRVVVLEQNHD   46 (454)
Q Consensus        11 ~~~~VvIIGaG~---aGl~aA~~l~~~g~~v~vie~~~~   46 (454)
                      +.+.++|.||+-   -|.++|+.|+++|++|++.++++.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            357788888764   367899999999999999998754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=0.69  Score=39.64  Aligned_cols=37  Identities=38%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             ccCCCcEEEECcCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 044575            9 CAQSKNVCVIGAGP-SGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus         9 ~~~~~~VvIIGaG~-aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      |-+.+.++|.||+- -|.++|+.|+++|.+|++.+|+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45567889999876 68999999999999999999865

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.57  E-value=0.68  Score=36.62  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             CCcEEEECc-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGA-GPSGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGa-G~aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      ...|+|.|| |+.|+.+...++..|.+|+.+++++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            456899896 9999999998888999999988754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.57  E-value=0.86  Score=38.41  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCc
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      .++||.++|.|++. +|.++|..|++.|.+|.+..|++.-
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            46789999988754 7889999999999999999987643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.6  Score=36.89  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLN  239 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~  239 (454)
                      ++++|+|+|+|..|.=.+..+...|. +|+++.+.+.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            57899999999999988888888887 7888877654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.20  E-value=0.68  Score=39.33  Aligned_cols=94  Identities=12%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCc-EEEeCCCEEee
Q 044575          202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTA  279 (454)
Q Consensus       202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~-v~~~dG~~i~~  279 (454)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|+..-...+.+.+... .+.....+.....-.. +.....+.-..
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGER-SMFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTT-EEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC-eEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            46788888887654 788999999999999999998654333333333211 1111222211100000 00000001137


Q ss_pred             ceEEEccCcccCCcCCC
Q 044575          280 DTILYCTGYSYSFPFLD  296 (454)
Q Consensus       280 D~vI~atG~~~~~~~l~  296 (454)
                      |.+|.+.|.....++.+
T Consensus        82 DilVnnAG~~~~~~~~~   98 (253)
T d1hxha_          82 NVLVNNAGILLPGDMET   98 (253)
T ss_dssp             CEEEECCCCCCCBCTTT
T ss_pred             CeEEecccccCCCCccc
Confidence            99999999876655543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=80.14  E-value=0.64  Score=39.65  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             CCcEEEECcCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 044575           12 SKNVCVIGAGP-SGLVAARELRKEGHRVVVLEQNH   45 (454)
Q Consensus        12 ~~~VvIIGaG~-aGl~aA~~l~~~g~~v~vie~~~   45 (454)
                      .+.++|-||+- -|.+.|+.|+++|++|++.++++
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34566666654 57799999999999999999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.12  E-value=0.95  Score=38.30  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcCC-CCHHHHHHHHhhhcCeEEEecccCCc
Q 044575          201 EPFRNEVVVVVGNS-LSGQDISMELVEVAKEVHLSAKSLNI  240 (454)
Q Consensus       201 ~~~~~k~vvVVG~G-~sg~e~A~~l~~~~~~V~l~~r~~~~  240 (454)
                      ..++||.++|.|++ -+|..+|..|++.|.+|.+..|+...
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG   42 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            35789999999874 57889999999999999999886543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.09  E-value=0.9  Score=35.47  Aligned_cols=36  Identities=14%  Similarity=-0.042  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575          204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++++|+|+|+|.+|.=.+..+...|.+|+.+.+++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            678999999999999877777788899988887654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.06  E-value=0.93  Score=38.15  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEecccCC
Q 044575          203 FRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKSLN  239 (454)
Q Consensus       203 ~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~~~  239 (454)
                      ++||+++|.|++. +|..+|..|++.|.+|.++.|+..
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            5789999998764 788999999999999999998654