Citrus Sinensis ID: 044581

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
GRGIGKNSKGNVKIREFGKKSFVSDDVVVVKKEKKKDELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcHHHHHHccccccccccEEccEEEEEEEcccccccEEEEEEEEEEcccccEEEEEEcccccEEEccccccEEEEcccccccEEEEEccccccEEEEEEEEccccEEEEEEccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHccccccccccccccEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEcccccEEEcccHHHHcEEccccccEEEEEEccccccEEEEEEEccccEEEEEEEccccEEEEEEHHHHHHHcccHHHccc
Coil and Loop (DISEMBL)
grgigknskgnvkirefgkksfvsddVVVVKKEKKkdelkksgdrdnkhnqesrnsekSEKQQANKRsreserrednynynvpwlrSHIRVRIISKELksgrlylkkgevvdvvgptmcdismdesgelIQGVDQDLletalprrggpvLVLYGrhkgvygnlvdrdldretgvvrdadtHELVNVKLEQIAEyigdpsylgy
Flexible Loop (DISEMBL)
grgigknskgnvkirefgkksfvsddvvvvkkekkkdelkksgdrdnkhnqesrnseksekqqankrsreserrednynynvpwlrshirvRIISkelksgrlylkkgevvdvVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLvlygrhkgvygnlvdrdldretgvvrdadthelvnvkleqiaeyigdpsylgy
Low Complexity Region (SEG)
GRGIGKNSKGNVKIREFGkksfvsddvvvvkkekkkdelkksGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY
Disordered region (IsUnstruct)
*****************************************************************************YNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD******
Disordered Region (DISOPRED)
************************************************************************************LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD******
Disordered Region (DISEMBL)
********KGNVKIREFGKKSFVSDDVVVVKK*******************************************DNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY
Disordered Region (DISPRO)
*********************************************************************************VPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GRGIGKNSKGNVKIREFGKKSFVSDDVVVVKKEKKKDELKKSGDRDNKHNQESxxxxxxxxxxxxxxxxxxxxxEDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9C801	462	Protein MOS2 OS=Arabidops	yes	no	0.758	0.333	0.590	6e-50
Q6NU07	487	G patch domain and KOW mo	N/A	no	0.733	0.305	0.312	1e-13
Q56A08	488	G patch domain and KOW mo	yes	no	0.729	0.303	0.328	3e-12
Q90X38	506	G patch domain and KOW mo	yes	no	0.778	0.312	0.291	1e-11
Q92917	476	G patch domain and KOW mo	yes	no	0.694	0.296	0.293	2e-11
Q21924	462	Protein mos-2 homolog OS=	yes	no	0.532	0.233	0.3	3e-07
Q55D16	445	KIN17-like protein OS=Dic	no	no	0.423	0.193	0.298	1e-05
Q8K339	391	DNA/RNA-binding protein K	no	no	0.384	0.199	0.387	0.0001
O60870	393	DNA/RNA-binding protein K	no	no	0.379	0.195	0.382	0.0004

>sp|Q9C801|MOS2_ARATH Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/154 (59%), Positives = 121/154 (78%)

Query: 44  DRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRL 103
           ++D K +   R +E+  + +     ++   +         WLRSHI+VRI+SK+ K GRL
Sbjct: 303 EKDKKTSGRGRGAERGSRSEVRASEKQDRGQTRERKVKPSWLRSHIKVRIVSKDWKGGRL 362

Query: 104 YLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNL 163
           YLKKG+VVDVVGPT CDI+MDE+ EL+QGVDQ+LLETALPRRGGPVLVL G+HKGVYGNL
Sbjct: 363 YLKKGKVVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLVLSGKHKGVYGNL 422

Query: 164 VDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD 197
           V++DLD+ETGVVRD D H++++V+L+Q+AEY+GD
Sbjct: 423 VEKDLDKETGVVRDLDNHKMLDVRLDQVAEYMGD 456

Required for innate and induced resistance to pathogens such as compatible and incompatible isolates of P.syringae and P.parasitica.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6NU07|GPKOW_XENLA G patch domain and KOW motifs-containing protein OS=Xenopus laevis GN=gpkow PE=2 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 11/160 (6%)

Query: 39  LKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKEL 98
           L KS    + +N+E R+ ++S +Q+  K+    E           WLR  IRVR I K  
Sbjct: 333 LSKSSGNGDSNNREKRHRQRSPEQEKEKKKIRPEPHG--------WLRRDIRVRFIDKNY 384

Query: 99  KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGP-VLVLYGRHK 157
           K G+ Y  K  V DV+ PT C +   E+G +++ + QD+LET +P+  G  V+V+ G+++
Sbjct: 385 KGGKYYNSKMLVEDVLSPTRC-VCRTENGCILEDIRQDMLETIIPKEEGEHVMVVLGKYR 443

Query: 158 GVYGNLVDRDLDRETGVVRDADTHELV-NVKLEQIAEYIG 196
           G+ G ++ RD  +   +V+    H+    +  + I  Y G
Sbjct: 444 GMVGKILHRDKQKSRALVQLQGEHDSAETLSYDAICHYTG 483

Xenopus laevis (taxid: 8355)

>sp|Q56A08|GPKOW_MOUSE G patch domain and KOW motifs-containing protein OS=Mus musculus GN=Gpkow PE=2 SV=2

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 46  DNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYL 105
           D+K  Q  + SEK  K   +++     + E     N  WL   +RVR I K  KSGR Y 
Sbjct: 333 DSKRRQ--KGSEKKRKHSPDRQDGPVPKTEKAAPRNKHWLHRDLRVRFIDKLHKSGRYYN 390

Query: 106 KKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLV 164
            K  + DV+ P  C    DE G +++ V +D+LET +P+  G  V+V+ G H G  G L 
Sbjct: 391 TKMTIEDVLSPDTCVCRTDE-GRVLEDVREDMLETLIPKGEGHRVMVVLGPHAGKVGLLR 449

Query: 165 DRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196
            RD  +   +V+    +++V +    I +Y+G
Sbjct: 450 SRDRAQSHALVQLRRENQVVELHYNAICQYMG 481

Mus musculus (taxid: 10090)

>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio GN=gpkow PE=2 SV=2

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 31  KKEKKKDELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIR 90
           K E+ K +  +  DRD K  +   +S   EK    K SR S            WL+  +R
Sbjct: 343 KDERGKTDRSREKDRDQKKRKHRESSTDREKPPPAKESRSSPPAPS-------WLQRDLR 395

Query: 91  VRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGP-V 149
           VR I K  K G+ Y  K  V DV+ P  C +   E G ++  + Q +LET +P+     +
Sbjct: 396 VRFIDKAFKGGKYYNSKMRVEDVLTPHTC-VCRTEEGRMLDDIRQKMLETIVPKNDSDYI 454

Query: 150 LVLYGRHKGVYGNLVDRDLDRETGVVR-DADTHELVNVKLEQIAEYIG 196
           +V+ G H+G  G ++ RD ++   +V+ D     +  +  + I  Y+G
Sbjct: 455 MVVLGEHRGQVGRILKRDREKCRAMVQLDRYEERVFTLDYDTICHYVG 502

Danio rerio (taxid: 7955)

>sp|Q92917|GPKOW_HUMAN G patch domain and KOW motifs-containing protein OS=Homo sapiens GN=GPKOW PE=1 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 2/143 (1%)

Query: 55  NSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVV 114
           NSE+  K   +++   + + E     +  WL   +RVR +    K G+ Y  K  + DV+
Sbjct: 328 NSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVDNMYKGGQYYNTKMIIEDVL 387

Query: 115 GPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLVDRDLDRETG 173
            P  C    DE G +++G+ +D+LET +P+  G  V+V+ G   G  G+L+ RD  R   
Sbjct: 388 SPDTCVCRTDE-GRVLEGLREDMLETLVPKAEGDRVMVVLGPQTGRVGHLLSRDRARSRA 446

Query: 174 VVRDADTHELVNVKLEQIAEYIG 196
           +V+    +++V +  + I +Y+G
Sbjct: 447 LVQLPRENQVVELHYDAICQYMG 469

Homo sapiens (taxid: 9606)

>sp|Q21924|MOS2_CAEEL Protein mos-2 homolog OS=Caenorhabditis elegans GN=mos-2 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 84  WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP 143
           W R+ + VR I ++ K G LY +K  +VDV G     I  D+ G     + Q  LET +P
Sbjct: 343 WARTDLLVRFIDEDFKRGSLYEQKVRIVDVAGDNDVTIE-DDRGNTHYNIRQSWLETVIP 401

Query: 144 RR-GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIA 192
           R  G  ++++ G+  G    ++D+D  +E    R   T+++V    E + 
Sbjct: 402 REIGEKLMIVAGKRSGQLAVMLDKDKRKEKVTARLVATNDVVTAYFEDVC 451

Caenorhabditis elegans (taxid: 6239)

>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 83  PWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETAL 142
           PW+   I ++II KEL +G+ + +KG +V V    +  + + +SG++++ +DQ  LET +
Sbjct: 334 PWIIKDIVIKIIDKELANGKYFKQKGYIVSVENEFLAKVKLLDSGDILK-IDQTFLETVI 392

Query: 143 PRRGGPVLVLYGRHKGVYGNLVDRDLD 169
           P+ G  V+++ G+++G    + + + D
Sbjct: 393 PQIGSTVIIVNGKYRGKEATIKNVNFD 419

Dictyostelium discoideum (taxid: 44689)

>sp|Q8K339|KIN17_MOUSE DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 84  WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP 143
           WL+  I V+II+K+L   + + KKG V +V+      + M +SG+ ++ +DQ  LET +P
Sbjct: 278 WLQPGIVVKIITKKLGE-KYHKKKGVVKEVIDRYTAVVKMTDSGDRLK-LDQTHLETVIP 335

Query: 144 RRGGPVLVLYGRHKGVYGNL 163
             G  VLVL G ++G  G L
Sbjct: 336 APGKRVLVLNGGYRGNEGTL 355

Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo. Binds via its C-terminal domain to RNA in vitro.

Mus musculus (taxid: 10090)

>sp|O60870|KIN17_HUMAN DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 84  WLRSHIRVRIISKELKSGRLYLKKGEVV-DVVGPTMCDISMDESGELIQGVDQDLLETAL 142
           WL+  I V+II+K+L  G  Y KK  +V +V+      + M +SG+ ++ +DQ  LET +
Sbjct: 280 WLQPEIIVKIITKKL--GEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLK-LDQTHLETVI 336

Query: 143 PRRGGPVLVLYGRHKGVYGNL 163
           P  G  +LVL G ++G  G L
Sbjct: 337 PAPGKRILVLNGGYRGNEGTL 357

Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo (By similarity). Binds via its C-terminal domain to RNA in vitro.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
255563997	479	Protein MOS2, putative [Ricinus communis	0.768	0.325	0.672	4e-55
449453435	500	PREDICTED: protein MOS2-like [Cucumis sa	0.758	0.308	0.668	2e-54
449525311	478	PREDICTED: protein MOS2-like [Cucumis sa	0.758	0.322	0.668	2e-54
224138392	455	predicted protein [Populus trichocarpa]	0.773	0.345	0.672	3e-53
224074548	436	predicted protein [Populus trichocarpa]	0.788	0.366	0.657	4e-53
356521374	477	PREDICTED: protein MOS2-like [Glycine ma	0.847	0.360	0.603	4e-51
356576961	431	PREDICTED: protein MOS2-like, partial [G	0.837	0.394	0.604	1e-50
312282977	453	unnamed protein product [Thellungiella h	0.985	0.441	0.529	2e-50
297799490	371	predicted protein [Arabidopsis lyrata su	0.975	0.533	0.520	8e-49
262316880	272	putative MOS-2 like protein [Raphanus sa	0.738	0.551	0.623	8e-49

>gi|255563997|ref|XP_002522998.1| Protein MOS2, putative [Ricinus communis] gi|223537810|gb|EEF39428.1| Protein MOS2, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 130/168 (77%), Gaps = 12/168 (7%)

Query: 38  ELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNY--NYNVPWLRSHIRVRIIS 95
           E KKS DRDN               + +K  RES RR+     +  + WLR HIRVR+IS
Sbjct: 322 EDKKSKDRDNGKGV----------TELSKERRESVRRDGGQVKDEKMRWLRDHIRVRVIS 371

Query: 96  KELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGR 155
           K+LK GR YLKKGEVVDVVGP +CDISMDE+ EL+QGVDQDLLETALPRRGGPVLVLYG+
Sbjct: 372 KDLKGGRFYLKKGEVVDVVGPYVCDISMDETKELVQGVDQDLLETALPRRGGPVLVLYGK 431

Query: 156 HKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           HKG YGNLV++DLDRETGVV+D DT E +NVKLEQIAEY+GDPSY+GY
Sbjct: 432 HKGAYGNLVEKDLDRETGVVQDFDTREFLNVKLEQIAEYVGDPSYIGY 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453435|ref|XP_004144463.1| PREDICTED: protein MOS2-like [Cucumis sativus]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 126/154 (81%)

Query: 50  NQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGE 109
           N+ +    + E +Q  ++     R ++     + WL SHIRVRIISKE K G+ YLKKGE
Sbjct: 347 NENTGQKRRREVEQVVEKRENGSRDKEKRTGRLSWLTSHIRVRIISKEFKGGKFYLKKGE 406

Query: 110 VVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLD 169
           +VDVVGP++CDIS+D S EL+QGV Q+LLETALPRRGGPVLVLYG+HKGVYG+LV+RDLD
Sbjct: 407 IVDVVGPSICDISIDGSRELVQGVSQELLETALPRRGGPVLVLYGKHKGVYGSLVERDLD 466

Query: 170 RETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           +ETGVVRDAD+HEL+NV+LEQIAEYIGDPSYLGY
Sbjct: 467 KETGVVRDADSHELLNVRLEQIAEYIGDPSYLGY 500

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525311|ref|XP_004169661.1| PREDICTED: protein MOS2-like [Cucumis sativus]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 126/154 (81%)

Query: 50  NQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGE 109
           N+ +    + E +Q  ++     R ++     + WL SHIRVRIISKE K G+ YLKKGE
Sbjct: 325 NENTGQKRRREVEQVVEKRENGSRDKEKRTGRLSWLTSHIRVRIISKEFKGGKFYLKKGE 384

Query: 110 VVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLD 169
           +VDVVGP++CDIS+D S EL+QGV Q+LLETALPRRGGPVLVLYG+HKGVYG+LV+RDLD
Sbjct: 385 IVDVVGPSICDISIDGSRELVQGVSQELLETALPRRGGPVLVLYGKHKGVYGSLVERDLD 444

Query: 170 RETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           +ETGVVRDAD+HEL+NV+LEQIAEYIGDPSYLGY
Sbjct: 445 KETGVVRDADSHELLNVRLEQIAEYIGDPSYLGY 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138392|ref|XP_002326591.1| predicted protein [Populus trichocarpa] gi|222833913|gb|EEE72390.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 131/168 (77%), Gaps = 11/168 (6%)

Query: 45  RDNKHNQESRNSEKS-EKQQANKRSRESERREDNYNYN--------VPWLRSHIRVRIIS 95
           +D K  +E ++S+   E++  NKRS ES  RE     N        V WLRSHIRVRIIS
Sbjct: 290 KDLKIKEEKKSSDGDREQRPVNKRSVES--RESLIIGNGGIVKERGVQWLRSHIRVRIIS 347

Query: 96  KELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGR 155
           K+LK G+LYLKKGEVVDVVGP  CD+SMDES EL+Q VDQDLLE ALPRRGGPVLVLYG+
Sbjct: 348 KDLKGGKLYLKKGEVVDVVGPYKCDVSMDESRELVQSVDQDLLENALPRRGGPVLVLYGK 407

Query: 156 HKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           H+G YGNLV RDLDRE GVV+D  +HEL+NVKLEQIAEY+GDPSY+GY
Sbjct: 408 HRGAYGNLVQRDLDREVGVVQDYGSHELLNVKLEQIAEYVGDPSYIGY 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074548|ref|XP_002304388.1| predicted protein [Populus trichocarpa] gi|222841820|gb|EEE79367.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 130/178 (73%), Gaps = 18/178 (10%)

Query: 32  KEKKKDELKKSGDRD------NKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWL 85
           KE K  E KK  D D      NK N ESR+S K       K     ER        V WL
Sbjct: 271 KELKSIEEKKPSDGDREQRRVNKRNVESRDSLKMGNGNVGK-----ER-------GVQWL 318

Query: 86  RSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRR 145
           RSHIRVRIISK+LK G+LYLKKGEVVDVVGP  CDISMDES EL+Q VDQD LETALPRR
Sbjct: 319 RSHIRVRIISKDLKGGKLYLKKGEVVDVVGPYKCDISMDESRELVQSVDQDALETALPRR 378

Query: 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           GGPVLVLYG+HKG YGNLV RD+DRE GVV+D+ +HEL++VKLEQIAEY+GDP Y+GY
Sbjct: 379 GGPVLVLYGKHKGAYGNLVQRDIDREVGVVQDSGSHELLDVKLEQIAEYVGDPGYIGY 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521374|ref|XP_003529331.1| PREDICTED: protein MOS2-like [Glycine max]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 134/174 (77%), Gaps = 2/174 (1%)

Query: 30  VKKEKKKDELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHI 89
           +K + ++D++ KS  R     +E R      K++     R+ ERR  ++   V WL SHI
Sbjct: 306 LKTQSEEDKVSKS-KRGRDEVEEKRGDLNRRKEKRVDVGRKEERRVVDHR-KVSWLTSHI 363

Query: 90  RVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPV 149
           RVR+IS++LK GRLYLKKGEV+DVVGPT CDISMDE+ E++QGV QD+LET +P+RGGPV
Sbjct: 364 RVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDENREIVQGVSQDVLETVIPKRGGPV 423

Query: 150 LVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           LVL G++KGVYG+L +RD DRET +VRDADTHEL+NVKLEQIAEYIGDPS LG+
Sbjct: 424 LVLAGKYKGVYGSLAERDFDRETAIVRDADTHELLNVKLEQIAEYIGDPSLLGH 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576961|ref|XP_003556598.1| PREDICTED: protein MOS2-like, partial [Glycine max]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 134/172 (77%), Gaps = 2/172 (1%)

Query: 32  KEKKKDELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRV 91
           K +++D++ KS  R     +E R      K++     R+ ERR  ++   V WL SHIRV
Sbjct: 262 KTQREDKVSKS-KRGRDEVEEKRGDVNRRKEKRVDVGRKEERRVVDHR-KVSWLTSHIRV 319

Query: 92  RIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLV 151
           R+IS++LK GRLYLKKGEV+DVVGPT CDISMDE+ E++QGV QD+LET +P+RGGPVLV
Sbjct: 320 RVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDENREIVQGVSQDVLETVIPKRGGPVLV 379

Query: 152 LYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           L G++KGVYG++ +RDLD+ET +VRDADTHEL+NVKLEQIAEYIGDPS LG+
Sbjct: 380 LAGKYKGVYGSMAERDLDQETAIVRDADTHELLNVKLEQIAEYIGDPSLLGH 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282977|dbj|BAJ34354.1| unnamed protein product [Thellungiella halophila]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/219 (52%), Positives = 152/219 (69%), Gaps = 19/219 (8%)

Query: 1   GRGIGKNSKGNVKIREFGKKSFV-----SDDVVVVKKEKKKDELKKSGDRDNKHNQESRN 55
           GR IG   KG + + + GK  FV     S D V V   +  D   K  +R  K  ++ + 
Sbjct: 238 GRDIG--LKGKI-VEKLGKDLFVLKLSGSKDEVTVGVNEVADLGSKEEERCLKKLKDLQL 294

Query: 56  SEKSEKQQANKRSRESER-----------REDNYNYNVPWLRSHIRVRIISKELKSGRLY 104
           ++K + ++A+KRSR +ER           +   +     WLRS I+VRI+SKELK GRLY
Sbjct: 295 NDKEKDKKASKRSRGTERGSKSEVKQERGQTREWRVKPSWLRSQIKVRIVSKELKGGRLY 354

Query: 105 LKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLV 164
           LKKG+VVDVVGPT CDI+MDE+ EL+QGVDQ+LLETALPRRGGPVLVL G+HKGVYGNLV
Sbjct: 355 LKKGKVVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLVLLGKHKGVYGNLV 414

Query: 165 DRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           ++DLD+ETGVVRD D H++++V+LEQ+AEY+GD   + Y
Sbjct: 415 EKDLDKETGVVRDLDNHKMLDVRLEQVAEYMGDMDDIEY 453

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799490|ref|XP_002867629.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313465|gb|EFH43888.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 150/221 (67%), Gaps = 23/221 (10%)

Query: 1   GRGIGKNSKGNVKIREFGKKS------FVSDDVVVVKKEKKKDELKKSGDRDNKHNQESR 54
           G+GIG  +K +VKI E+ K S      F  D     K +K  D+   SG  +      ++
Sbjct: 156 GQGIGLKAKEDVKIVEYKKWSGNEGFGFNMD-----KAKKIIDDKLGSGIHEEVKVGFNK 210

Query: 55  NSEKSEKQQANKRSRESE------RREDNYNY------NVPWLRSHIRVRIISKELKSGR 102
                + +  +KRSR++E       R    NY       V WLRSHIRVRIISK+++ GR
Sbjct: 211 IDNVEKDRVVSKRSRDTEGESRTEVRACKQNYRGQTREKVSWLRSHIRVRIISKDVRGGR 270

Query: 103 LYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGN 162
           LYLKK EV DVVGPT CD++MDE+ EL+QG+DQ+LLETALPRRGG VLVL GRHKGVYG 
Sbjct: 271 LYLKKAEVTDVVGPTSCDVAMDETQELVQGIDQELLETALPRRGGSVLVLSGRHKGVYGK 330

Query: 163 LVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           LV++DLD+ETGVV DAD+ ++++VKL+Q+AEYIGDP+ +GY
Sbjct: 331 LVEKDLDKETGVVCDADSQQMLHVKLDQVAEYIGDPADIGY 371

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262316880|emb|CAZ44329.1| putative MOS-2 like protein [Raphanus sativus]

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 125/154 (81%), Gaps = 4/154 (2%)

Query: 50  NQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGE 109
           ++E+    ++E + + K  R  ERR    +    WLRSHI+VRI+SK+LK GRLYLKKG+
Sbjct: 123 SRETERVSRNEVRASEKHDRGGERRVKKPS----WLRSHIKVRIVSKQLKGGRLYLKKGK 178

Query: 110 VVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLD 169
           VVDVVGPT CDI+MDE+ EL+QGVDQ+LLETALPRRGGPVL+L G+HKGVYGNLV++DLD
Sbjct: 179 VVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLILSGKHKGVYGNLVEKDLD 238

Query: 170 RETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
           RETGV+RD D H++++V+LEQ+AEY+GD   + Y
Sbjct: 239 RETGVLRDLDNHKMLDVRLEQVAEYMGDMDDVEY 272

Source: Raphanus sativus

Species: Raphanus sativus

Genus: Raphanus

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2007033	462	MOS2 "modifier of snc1, 2" [Ar	0.788	0.346	0.575	6.9e-53
TAIR|locus:2117278	375	AT4G25020 [Arabidopsis thalian	0.748	0.405	0.635	6.8e-51
DICTYBASE|DDB_G0289933	542	DDB_G0289933 "G patch domain a	0.704	0.263	0.317	5.5e-17
RGD|1583600	487	Gpkow "G patch domain and KOW	0.729	0.303	0.335	6.8e-16
UNIPROTKB|F1RW48	481	GPKOW "Uncharacterized protein	0.753	0.318	0.294	2.3e-15
MGI|MGI:1859610	488	Gpkow "G patch domain and KOW	0.729	0.303	0.328	6.5e-15
UNIPROTKB|E2R694	484	GPKOW "Uncharacterized protein	0.753	0.316	0.275	4.7e-14
UNIPROTKB|Q92917	476	GPKOW "G patch domain and KOW	0.704	0.300	0.301	7.5e-14
ZFIN|ZDB-GENE-030616-159	506	t54l "T54 protein-like" [Danio	0.714	0.286	0.296	1.1e-13
UNIPROTKB|E1BN14	480	GPKOW "Uncharacterized protein	0.694	0.293	0.286	1.3e-13

TAIR|locus:2007033 MOS2 "modifier of snc1, 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 92/160 (57%), Positives = 123/160 (76%)

Query:    44 DRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRL 103
             ++D K +   R +E+  + +     ++   +         WLRSHI+VRI+SK+ K GRL
Sbjct:   303 EKDKKTSGRGRGAERGSRSEVRASEKQDRGQTRERKVKPSWLRSHIKVRIVSKDWKGGRL 362

Query:   104 YLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNL 163
             YLKKG+VVDVVGPT CDI+MDE+ EL+QGVDQ+LLETALPRRGGPVLVL G+HKGVYGNL
Sbjct:   363 YLKKGKVVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLVLSGKHKGVYGNL 422

Query:   164 VDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
             V++DLD+ETGVVRD D H++++V+L+Q+AEY+GD   + Y
Sbjct:   423 VEKDLDKETGVVRDLDNHKMLDVRLDQVAEYMGDMDDIEY 462

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003723 "RNA binding" evidence=ISS

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2117278 AT4G25020 [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 101/159 (63%), Positives = 124/159 (77%)

Query:    45 RDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLY 104
             R+ +   ESR   K+ KQ  N R +  E RE        WLRSHI+VRIISK++K GRLY
Sbjct:   224 RNRETEGESRTEVKACKQ--NYRGQTRETRE-----KTSWLRSHIKVRIISKDVKGGRLY 276

Query:   105 LKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLV 164
             LKK  V DVVGPT CDI+MDE+ EL+QG+DQ+LLETALPRRGG VLVL GRHKGVYG LV
Sbjct:   277 LKKAVVTDVVGPTSCDIAMDETQELVQGIDQELLETALPRRGGSVLVLSGRHKGVYGRLV 336

Query:   165 DRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPSYLGY 203
             ++DLD+ETGVV DAD+ E+++VKL+Q+AEYIGDP+ +GY
Sbjct:   337 EKDLDKETGVVCDADSQEMLHVKLDQVAEYIGDPADIGY 375

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0289933 DDB_G0289933 "G patch domain and KOW motifs-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 217 (81.4 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 47/148 (31%), Positives = 82/148 (55%)

Query:    53 SRNSEKSEKQQANKRSRESERREDNYNYN-VPWLRSHIRVRIISKELKSGRLYLKKGEVV 111
             S +S KS    ++  S  +     + + N V W+R  I V++ISK L  G+ Y KK  V 
Sbjct:   388 SSSSSKSSSSTSSSSSYSTSSSSSSSSSNSVMWIRPQILVKVISKSLGDGKYYNKKATVS 447

Query:   112 DVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDR---DL 168
             D++G  +C +  D +G +++ V Q +LETA+P+  G ++++ G++KG  G L++R     
Sbjct:   448 DILGEKLCSLHFD-NGVVVENVKQSMLETAIPKVKGDLIIVRGKYKGKIGTLIERRRNKK 506

Query:   169 DRETGVVRDADTHELVNVKLEQIAEYIG 196
             D E  +V+      ++   L+ I EY+G
Sbjct:   507 DIEMAIVQLVGDLSVLEFDLDDICEYVG 534

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1583600 Gpkow "G patch domain and KOW motifs" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 51/152 (33%), Positives = 79/152 (51%)

Query:    46 DNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYL 105
             D+K  Q  ++SEK  K   ++R     + E     N  WL   +RVR I K  K GR Y 
Sbjct:   332 DSKRRQ--KDSEKKRKHSPDRRDGPVPKTEKAAPRNKHWLHRDLRVRFIDKVHKGGRYYN 389

Query:   106 KKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLV 164
              K  + DV+ P  C    DE G +++GV + +LET +PR  G  V+V+ G H G  G L+
Sbjct:   390 TKMTIEDVLSPGTCVCRTDE-GRVLEGVKEGMLETLVPRGEGHRVMVVLGPHAGKVGLLL 448

Query:   165 DRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196
              RD  +   +V+    +++V +  + I +Y+G
Sbjct:   449 RRDRAQSHAMVQLGRENQVVELHYDAICQYMG 480

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1RW48 GPKOW "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 201 (75.8 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 46/156 (29%), Positives = 83/156 (53%)

Query:    45 RDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLY 104
             RD   +    +SE+  K   ++    + + E     +  WL   +RVR + K+ K G+ Y
Sbjct:   323 RDQDLHVRREDSERKRKHLPDRPDGPAAKSEKAAPRSQHWLHRDLRVRFVDKQHKGGQYY 382

Query:   105 LKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNL 163
               K  + DV+ P  C    DE G++++G+ +D+LET +P+  G  V+V+ G   G  G L
Sbjct:   383 NTKMTIEDVLSPDTCVCRTDE-GQVLEGLREDMLETLVPKVEGHRVMVVLGPRAGRVGRL 441

Query:   164 VDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPS 199
             ++RD +R   +V+    +++V +  + I +Y+G PS
Sbjct:   442 LERDRERSRALVQLRRENQVVELHYDAICQYVG-PS 476

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1859610 Gpkow "G patch domain and KOW motifs" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 50/152 (32%), Positives = 77/152 (50%)

Query:    46 DNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYL 105
             D+K  Q  + SEK  K   +++     + E     N  WL   +RVR I K  KSGR Y 
Sbjct:   333 DSKRRQ--KGSEKKRKHSPDRQDGPVPKTEKAAPRNKHWLHRDLRVRFIDKLHKSGRYYN 390

Query:   106 KKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLV 164
              K  + DV+ P  C    DE G +++ V +D+LET +P+  G  V+V+ G H G  G L 
Sbjct:   391 TKMTIEDVLSPDTCVCRTDE-GRVLEDVREDMLETLIPKGEGHRVMVVLGPHAGKVGLLR 449

Query:   165 DRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196
              RD  +   +V+    +++V +    I +Y+G
Sbjct:   450 SRDRAQSHALVQLRRENQVVELHYNAICQYMG 481

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R694 GPKOW "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 43/156 (27%), Positives = 81/156 (51%)

Query:    45 RDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLY 104
             RD        +SE+  K   +++   + + E     +  WL   +RVR + ++ K G+ Y
Sbjct:   326 RDQDLPSWREDSERKRKHLPDRQGEPAAKNEKAGPQSQHWLHRDLRVRFVDRQHKGGQYY 385

Query:   105 LKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNL 163
               K  + DV+ P  C    DE G +++G+ +++LET +P+  G  V+V+ G   G  G L
Sbjct:   386 NTKMTIEDVLSPDTCVCRTDE-GRILEGLKENMLETLVPKVEGNRVMVVLGPQAGRVGRL 444

Query:   164 VDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPS 199
             + R+ +R   +V+    ++LV +  + + +Y+G PS
Sbjct:   445 LGRNRERSRALVQLRRENQLVELHYDAVCQYMG-PS 479

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q92917 GPKOW "G patch domain and KOW motifs-containing protein" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 44/146 (30%), Positives = 77/146 (52%)

Query:    55 NSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVV 114
             NSE+  K   +++   + + E     +  WL   +RVR +    K G+ Y  K  + DV+
Sbjct:   328 NSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVDNMYKGGQYYNTKMIIEDVL 387

Query:   115 GPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLVDRDLDRETG 173
              P  C    DE G +++G+ +D+LET +P+  G  V+V+ G   G  G+L+ RD  R   
Sbjct:   388 SPDTCVCRTDE-GRVLEGLREDMLETLVPKAEGDRVMVVLGPQTGRVGHLLSRDRARSRA 446

Query:   174 VVRDADTHELVNVKLEQIAEYIGDPS 199
             +V+    +++V +  + I +Y+G PS
Sbjct:   447 LVQLPRENQVVELHYDAICQYMG-PS 471

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-030616-159 t54l "T54 protein-like" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 46/155 (29%), Positives = 73/155 (47%)

Query:    44 DRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRL 103
             DRD K  +   +S   EK    K SR S            WL+  +RVR I K  K G+ 
Sbjct:   356 DRDQKKRKHRESSTDREKPPPAKESRSSPPAPS-------WLQRDLRVRFIDKAFKGGKY 408

Query:   104 YLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGP-VLVLYGRHKGVYGN 162
             Y  K  V DV+ P  C +   E G ++  + Q +LET +P+     ++V+ G H+G  G 
Sbjct:   409 YNSKMRVEDVLTPHTC-VCRTEEGRMLDDIRQKMLETIVPKNDSDYIMVVLGEHRGQVGR 467

Query:   163 LVDRDLDRETGVVR-DADTHELVNVKLEQIAEYIG 196
             ++ RD ++   +V+ D     +  +  + I  Y+G
Sbjct:   468 ILKRDREKCRAMVQLDRYEERVFTLDYDTICHYVG 502

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BN14 GPKOW "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 41/143 (28%), Positives = 76/143 (53%)

Query:    55 NSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVV 114
             ++E+  K   +++   + + E     +  WL   +RVR + K  K G+ Y  K  + DV+
Sbjct:   332 DAERKRKHHPDRQDGPATKNEKAAPRSQHWLHRDLRVRFVDKLHKGGQYYNTKMTIEDVL 391

Query:   115 GPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLVDRDLDRETG 173
              P  C    DE G++++G+ +D+LET +P+  G  V+V+ G+  G  G L+DRD  R   
Sbjct:   392 SPDTCVCRTDE-GQVLEGLREDMLETLVPKVPGDQVMVVLGQWAGRVGRLLDRDRARSRA 450

Query:   174 VVRDADTHELVNVKLEQIAEYIG 196
             +V+      +V +  + I +++G
Sbjct:   451 LVQLQREDRVVELHYDAICQFVG 473

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
cd13153	51	cd13153, KOW_GPKOW_B, KOW motif of the "G-patch do	3e-11

>gnl|CDD|240517 cd13153, KOW_GPKOW_B, KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B

 Score = 56.0 bits (136), Expect = 3e-11
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196
           G  V+V+ G+H+G  G L++RD  +ET VV+  D   +V +  + I EY G
Sbjct: 1   GAYVMVVRGKHRGQVGKLLERDKKKETAVVQLLDDFSVVTLSYDDICEYTG 51

GPKOW contains one G-patch domain and two KOW motifs. GPKOW is a nuclear protein that regulated by catalytic (C) subunit of Protein Kinase A (PKA) and bind RNA in vivo. PKA may be involved in regulating multiple steps in post-transcriptional processing of pre-mRNAs. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. GPKOW is also known as the T54 protein or MOS2 homolog. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG4315	455	consensus G-patch nucleic acid binding protein [Ge	99.95
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	98.96
KOG1999	1024	consensus RNA polymerase II transcription elongati	98.77
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	97.31
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	96.71
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	96.48
CHL00141	83	rpl24 ribosomal protein L24; Validated	96.44
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	96.0
TIGR00405	145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	95.87
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	95.75
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	95.65
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	95.56
PRK08559	153	nusG transcription antitermination protein NusG; V	95.17
PTZ00194	143	60S ribosomal protein L26; Provisional	95.16
TIGR00922	172	nusG transcription termination/antitermination fac	95.0
PRK04313	237	30S ribosomal protein S4e; Validated	94.42
PRK05609	181	nusG transcription antitermination protein NusG; V	94.14
COG0250	178	NusG Transcription antiterminator [Transcription]	93.98
TIGR01955	159	RfaH transcriptional activator RfaH. This model re	92.54
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	92.45
PLN00036	261	40S ribosomal protein S4; Provisional	92.35
COG5164	607	SPT5 Transcription elongation factor [Transcriptio	92.33
PRK09014	162	rfaH transcriptional activator RfaH; Provisional	92.32
PTZ00118	262	40S ribosomal protein S4; Provisional	91.81
KOG1999	1024	consensus RNA polymerase II transcription elongati	90.76
TIGR01956	258	NusG_myco NusG family protein. This model represen	90.61
PTZ00223	273	40S ribosomal protein S4; Provisional	89.94
PF11623	53	DUF3252: Protein of unknown function (DUF3252); In	89.13
PF15591	74	Imm17: Immunity protein 17	86.31

>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]

Probab=99.95  E-value=1.3e-28  Score=226.94  Aligned_cols=122  Identities=60%  Similarity=1.027  Sum_probs=116.4

Q ss_pred             CCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEec-cccCceeeecCCCCC-cEEEEeccccCc
Q 044581           82 VPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQG-VDQDLLETALPRRGG-PVLVLYGRHKGV  159 (203)
Q Consensus        82 ~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~-V~q~~LETVIPk~g~-~V~VV~G~~rG~  159 (203)
                      ..|++++|.|||+|+.|++|+||.+|++|.+|.++.+|+|.++++++.++. |.|++|||++|+.++ +|||+.|+|.|+
T Consensus       331 k~wlR~dl~VR~is~d~Kgg~ly~~K~~i~dv~gp~scd~r~Dedq~~~qg~irq~~lET~~pr~~Ge~vmvv~gkhkg~  410 (455)
T KOG4315|consen  331 KSWLRSDLKVRFISKDVKGGRLYEKKVRIVDVVGPTSCDIRMDEDQELVQGNIRQELLETALPRRGGEKVMVVSGKHKGV  410 (455)
T ss_pred             chhhhcceeEEeeccccccchhhhcccceecccCCCccceeccccccccccchHHHHHhhhcccccCceeEEEecccccc
Confidence            489999999999999999999999999999999999999999998988988 999999999999876 599999999999


Q ss_pred             EEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccC-CCCCCCC
Q 044581          160 YGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIG-DPSYLGY  203 (203)
Q Consensus       160 ~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g-~~~~~~~  203 (203)
                      +|.|+++|.++.+++|++..+++++.+.||+||+|.| +.+|.+|
T Consensus       411 ~g~llskd~~Ke~~~v~~~a~ndvv~~~~D~v~ey~grh~~d~~~  455 (455)
T KOG4315|consen  411 YGSLLSKDLDKETGVVRLVATNDVVTVYLDQVCEYMGRHEEDIEY  455 (455)
T ss_pred             hhhhhhhhhhhhhcceecccccchhhhhHHHHHHhhCCChhhcCC
Confidence            9999999999999999999999999999999999999 7788776

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=98.96  E-value=1.5e-11  Score=109.50  Aligned_cols=62  Identities=35%  Similarity=0.576  Sum_probs=57.3

Q ss_pred             EEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEeccccCcE
Q 044581           90 RVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVY  160 (203)
Q Consensus        90 ~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~  160 (203)
                      +|+|+++++ +-+ |++||||.+|++.|+..|. +|+|++| .++|.+||||||+     |||+|.|||.-
T Consensus       247 ~vk~~sk~l-~~k-~K~K~vv~~vid~y~~~~K-ld~g~~l-k~dq~~lEtvip~-----~~vng~yRg~~  308 (309)
T KOG2837|consen  247 VVKVISKSL-GEK-YKQKGVVKKVIDDYTGQIK-LDSGTVL-KVDQEHLETVIPQ-----MIVNGAYRGSE  308 (309)
T ss_pred             EEEeehhhh-hHH-hccccHHHHHHHhhhhhee-ccCCcee-cccHHHHHHHhHH-----HHhhhhhccCC
Confidence            899999999 555 9999999999999999999 5688888 8999999999999     99999999964

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=98.77  E-value=6.6e-09  Score=104.58  Aligned_cols=110  Identities=22%  Similarity=0.293  Sum_probs=97.8

Q ss_pred             CCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEeccccCcE
Q 044581           81 NVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVY  160 (203)
Q Consensus        81 ~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~  160 (203)
                      ..+| ..++.+.+.+.++ +.+..++.++|++|. .+.|++++.+.++.+ .+..++|+++.|..++.++|+.|.++|.+
T Consensus       914 ~~~~-~~~~~~~~~d~~~-~~~~~G~~~~ir~v~-~G~~sv~~~de~~~~-~~s~~~~a~~~p~~~d~~k~~~g~~~g~~  989 (1024)
T KOG1999|consen  914 SGNG-GDGNSSWGPDTSL-DTQLVGQTGIIRSVA-DGGCSVWLGDEGETI-SNSKPHLAPAPPCKGDDVKSIWGDDRGST  989 (1024)
T ss_pred             CCCC-CccceEecccccc-cceecccccceeecc-CCceeeecCCCCccc-ccccccCccCCCCCCCCcccccccccccc
Confidence            3456 6688888888666 899999999999997 689999999888888 89999999999999999999999999999


Q ss_pred             EEEEEeeCCCceEEEEECCCCcEEEeeccchhcccC
Q 044581          161 GNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIG  196 (203)
Q Consensus       161 G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g  196 (203)
                      |+|++.|..  .++|+++.+.++.+|++-.+|+++.
T Consensus       990 ~~~~~~dg~--~g~~~~d~~~~~k~l~~~~~~k~~~ 1023 (1024)
T KOG1999|consen  990 GKLVGNDGW--DGIVRIDETSDIKILNLGLLCKMVS 1023 (1024)
T ss_pred             ccccCCCcc--cceecccccccchhhhhhhhhhccC
Confidence            999999988  5778887777788999999999975

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.31  E-value=0.00044  Score=42.66  Aligned_cols=31  Identities=32%  Similarity=0.442  Sum_probs=27.5

Q ss_pred             CCCcEEEEeccccCcEEEEEEeeCCCceEEE
Q 044581          145 RGGPVLVLYGRHKGVYGNLVDRDLDRETGVV  175 (203)
Q Consensus       145 ~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V  175 (203)
                      +|+.|+|+.|.|+|..|++++++.++..+.|
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~~~V~v   31 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSKVRVTV   31 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCCCEEEE
Confidence            4789999999999999999999999866554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=96.71  E-value=0.0031  Score=36.68  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=24.0

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeC
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDL  168 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~  168 (203)
                      |..|+.|+|+.|.|+|..|.+++++.
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i~~   27 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEVDG   27 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence            56799999999999999999999975

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=96.48  E-value=0.0055  Score=45.23  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=29.9

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|.|+.|.++|..|+++.++.+++.++|+
T Consensus         8 ~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve   40 (76)
T PRK12281          8 KKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVE   40 (76)
T ss_pred             cCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence            468999999999999999999999998877765

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=96.44  E-value=0.0059  Score=45.77  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|+++.++.+++.++|+
T Consensus        10 ~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve   42 (83)
T CHL00141         10 KIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVK   42 (83)
T ss_pred             cCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence            468999999999999999999999998877764

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=96.00  E-value=0.013  Score=45.61  Aligned_cols=33  Identities=24%  Similarity=0.500  Sum_probs=30.1

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|++++++.+++.+.|+
T Consensus         6 ~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve   38 (105)
T PRK00004          6 KKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVE   38 (105)
T ss_pred             cCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence            468999999999999999999999998887775

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal

Probab=95.87  E-value=0.022  Score=45.57  Aligned_cols=52  Identities=21%  Similarity=0.250  Sum_probs=44.5

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcE--EEeeccchhcc
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHEL--VNVKLEQIAEY  194 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i--~~l~~ddvck~  194 (203)
                      ...|+.|.|+.|.+.|..|.+..+|..+..+.|.+...+..  +++++++|-+.
T Consensus        87 ~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~~v~v~~~~l~~~  140 (145)
T TIGR00405        87 IKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEAAVPIPVTVKGDQVRII  140 (145)
T ss_pred             cCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEcCccceEEEeeeEEEEe
Confidence            66899999999999999999999999888999988765544  67888888654

This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=95.75  E-value=0.019  Score=45.97  Aligned_cols=33  Identities=39%  Similarity=0.563  Sum_probs=30.3

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+|+.|.++|..|+++.++..++.++|.
T Consensus        47 kkGD~V~VisG~~KGk~GkV~~V~~~~~~V~Ve   79 (120)
T PRK01191         47 RKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVE   79 (120)
T ss_pred             eCCCEEEEeecCCCCceEEEEEEEcCCCEEEEe
Confidence            569999999999999999999999998887775

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=95.65  E-value=0.021  Score=44.49  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=29.9

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|.||.|.++|..|+++.++..++.++|+
T Consensus         5 kkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve   37 (104)
T TIGR01079         5 KKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVE   37 (104)
T ss_pred             cCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEC
Confidence            468999999999999999999999998887764

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=95.56  E-value=0.022  Score=45.22  Aligned_cols=39  Identities=28%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             eeeecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          138 LETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       138 LETVIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      ..++.=+.|+.|+|+.|.++|..|+++.++..++.++|+
T Consensus        37 ~r~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Ve   75 (114)
T TIGR01080        37 KRALPVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVE   75 (114)
T ss_pred             cccceeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEc
Confidence            333433679999999999999999999999988776665

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>PRK08559 nusG transcription antitermination protein NusG; Validated

Probab=95.17  E-value=0.061  Score=43.90  Aligned_cols=50  Identities=24%  Similarity=0.258  Sum_probs=42.7

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcE--EEeeccchh
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHEL--VNVKLEQIA  192 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i--~~l~~ddvc  192 (203)
                      ...|+.|.|+.|.++|..|.+.++|.++..+.|.+....--  +++++++|.
T Consensus        95 ~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~~  146 (153)
T PRK08559         95 IKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQVR  146 (153)
T ss_pred             CCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEEE
Confidence            56799999999999999999999999988899888764434  678888873

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=95.16  E-value=0.034  Score=45.86  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+|+.|.++|..|++++++..++.++|.
T Consensus        48 kkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVE   80 (143)
T PTZ00194         48 RKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIE   80 (143)
T ss_pred             ecCCEEEEecCCCCCCceEEEEEEcCCCEEEEe
Confidence            569999999999999999999999998887775

>TIGR00922 nusG transcription termination/antitermination factor NusG

Probab=95.00  E-value=0.063  Score=43.81  Aligned_cols=49  Identities=18%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccch
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQI  191 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddv  191 (203)
                      +..|+.|.|+.|.+.|..|.+..+|..+..+.|.++--+  ..+.+++++|
T Consensus       120 ~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g~~~~v~v~~~~l  170 (172)
T TIGR00922       120 FEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFGRETPVELEFSQV  170 (172)
T ss_pred             CCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECCCceEEEEcHHHe
Confidence            456999999999999999999999987778888776433  3456777765

Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).

>PRK04313 30S ribosomal protein S4e; Validated

Probab=94.42  E-value=0.56  Score=41.61  Aligned_cols=52  Identities=13%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             ccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeCCC----ceEEEEECCCCcEE
Q 044581          132 GVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDLDR----ETGVVRDADTHELV  184 (203)
Q Consensus       132 ~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~~k----~~a~V~L~~~~~i~  184 (203)
                      +++...+.-.+| ..|..+||..|.|.|.+|++.++....    ..+.|+ +.++..+
T Consensus       160 ~l~~~kI~~~i~fe~G~l~~itgG~n~GriG~I~~i~~~~~~~~~~V~i~-d~~G~~F  216 (237)
T PRK04313        160 SLPEQEIVDHIPFEEGNLAIITGGKHVGEIGKIKEIEVTKSSKPNIVTLE-DKDGEKF  216 (237)
T ss_pred             ECCCCceeEEEecCCCCEEEEECCeeeeeEEEEEEEEEccCCCCcEEEEE-cCCCCEE
Confidence            443443444444 668899999999999999999996432    455555 3345444

>PRK05609 nusG transcription antitermination protein NusG; Validated

Probab=94.14  E-value=0.14  Score=42.02  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhc
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAE  193 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck  193 (203)
                      ...|+.|.|+.|.+.|..|.+..+|..+..+.|.+.--+  ..+.++++++-+
T Consensus       127 ~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~l~~~~l~~  179 (181)
T PRK05609        127 FEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVELEFSQVEK  179 (181)
T ss_pred             CCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEEEchHHEEE
Confidence            456999999999999999999999977777877765433  345677777644

>COG0250 NusG Transcription antiterminator [Transcription]

Probab=93.98  E-value=0.13  Score=43.41  Aligned_cols=54  Identities=15%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             ecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhcc
Q 044581          141 ALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAEY  194 (203)
Q Consensus       141 VIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck~  194 (203)
                      +-+..|+.|+|+.|.++|..|++.++|.++..+.|.+..-+  .-+.|.|++|-++
T Consensus       122 ~~~e~Gd~VrI~~GpFa~f~g~V~evd~ek~~~~v~v~ifgr~tPVel~~~qVek~  177 (178)
T COG0250         122 VDFEPGDVVRIIDGPFAGFKAKVEEVDEEKGKLKVEVSIFGRPTPVELEFDQVEKL  177 (178)
T ss_pred             ccCCCCCEEEEeccCCCCccEEEEEEcCcCcEEEEEEEEeCCceEEEEehhhEEEe
Confidence            44566899999999999999999999999888888776422  2357888887654

>TIGR01955 RfaH transcriptional activator RfaH

Probab=92.54  E-value=0.34  Score=38.87  Aligned_cols=48  Identities=17%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCc--EEEeeccch
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHE--LVNVKLEQI  191 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~--i~~l~~ddv  191 (203)
                      ...|+.|.|+.|.+.|..|.+..++.. ..+.|.++--+.  .+.+++++|
T Consensus       109 ~~~G~~V~V~~GPf~g~~g~v~~~~~~-~r~~v~l~~~gr~~~v~~~~~~~  158 (159)
T TIGR01955       109 PYKGDKVRITDGAFAGFEAIFLEPDGE-KRSMLLLNMIGKQIKVSVPNTSV  158 (159)
T ss_pred             CCCCCEEEEeccCCCCcEEEEEEECCC-ceEEEEEhhhCCceEEEecHHHc
Confidence            356999999999999999999999844 477777654332  345666654

This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=92.45  E-value=0.22  Score=39.10  Aligned_cols=31  Identities=29%  Similarity=0.462  Sum_probs=27.3

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      ++|+.|.||.|.++|..|.+++++..+  ++|+
T Consensus         6 rkGD~V~Vi~GkdKGk~GkVl~v~~k~--V~VE   36 (104)
T COG0198           6 KKGDTVKVIAGKDKGKEGKVLKVLPKK--VVVE   36 (104)
T ss_pred             ecCCEEEEEecCCCCcceEEEEEecCe--EEEE
Confidence            468999999999999999999999996  5554

>PLN00036 40S ribosomal protein S4; Provisional

Probab=92.35  E-value=1.7  Score=39.12  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             ccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeC
Q 044581          132 GVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDL  168 (203)
Q Consensus       132 ~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~  168 (203)
                      +++...+.-.+| ..|..+||..|.|.|.+|+++++..
T Consensus       163 ~l~~~kI~~~ikfe~G~l~~vtgG~n~GrvG~I~~i~~  200 (261)
T PLN00036        163 DLETNKIVDFIKFDVGNLVMVTGGRNRGRVGVIKNREK  200 (261)
T ss_pred             eCCCCceeeEEecCCCCEEEEECCeeceeEEEEEEEEe
Confidence            444444555555 6678999999999999999999873

>COG5164 SPT5 Transcription elongation factor [Transcription]

Probab=92.33  E-value=0.49  Score=46.01  Aligned_cols=55  Identities=22%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCCCC
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPS  199 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~~~  199 (203)
                      |..|..|.|=+|+|+|+.|.+.++|..  .|.|+|-+.+++++++-.-|.-|.-.-|
T Consensus       352 ~aigktVrIr~g~yKG~lGVVKdv~~~--~arVeLhs~nK~VTI~K~~l~y~~reGe  406 (607)
T COG5164         352 PAIGKTVRIRCGEYKGHLGVVKDVDRN--IARVELHSNNKFVTIEKSRLAYLGREGE  406 (607)
T ss_pred             cccCceEEEeecccccccceeeeccCc--eEEEEEecCCceEEeehhheEEeccccc
Confidence            666788999999999999999999988  7899998877888777776665543333

>PRK09014 rfaH transcriptional activator RfaH; Provisional

Probab=92.32  E-value=0.34  Score=39.29  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhc
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAE  193 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck  193 (203)
                      ...|++|.|+.|.+.|..|.+..+|.+ ..+.|.++--+  ..+.+++++|-+
T Consensus       110 ~~~G~~V~I~~Gp~~g~eg~v~~~~~~-~r~~v~v~~~gr~~~v~v~~~~~~~  161 (162)
T PRK09014        110 PKPGDKVIITEGAFEGLQAIYTEPDGE-ARSILLLNLLNKQVKHSVDNTQFRK  161 (162)
T ss_pred             CCCCCEEEEecCCCCCcEEEEEEeCCC-eEEEEeehhhCCcEEEEECHHHeec
Confidence            457999999999999999999999954 46667665422  335688777743

>PTZ00118 40S ribosomal protein S4; Provisional

Probab=91.81  E-value=1.6  Score=39.38  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             EeccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeC
Q 044581          130 IQGVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDL  168 (203)
Q Consensus       130 v~~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~  168 (203)
                      +.+++...+.-.+| ..|..+||..|.|.|.+|+++++..
T Consensus       161 ~i~l~~~kI~~~ikfe~G~l~~vtgG~n~GriG~I~~~~~  200 (262)
T PTZ00118        161 RLDLETGKVLEFLKFEVGNLVMITGGHNVGRVGTIVSKEK  200 (262)
T ss_pred             EEECCCCceeeEEecCCCCEEEEECCeeceeEEEEEEEEe
Confidence            33444444554555 6678999999999999999999764

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=90.76  E-value=1.7  Score=45.33  Aligned_cols=81  Identities=25%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             ccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEec--CCCceEeccccCceeeecCCCCCcEEEEeccccCcEEE
Q 044581           85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMD--ESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGN  162 (203)
Q Consensus        85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~--d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~G~  162 (203)
                      +.|+=.|.|+     .|.+-|-||+|..|. ...++|...  +-...+ .++.+.|--. =+.|+.|+|+.|.|-|.+|.
T Consensus       408 F~~GD~VeV~-----~Gel~glkG~ve~vd-g~~vti~~~~e~l~~pl-~~~~~eLrKy-F~~GDhVKVi~G~~eG~tGl  479 (1024)
T KOG1999|consen  408 FSPGDAVEVI-----VGELKGLKGKVESVD-GTIVTIMSKHEDLKGPL-EVPASELRKY-FEPGDHVKVIAGRYEGDTGL  479 (1024)
T ss_pred             cCCCCeEEEe-----eeeeccceeEEEecc-CceEEEeeccccCCCcc-ccchHhhhhh-ccCCCeEEEEeccccCCcce
Confidence            5677777777     688899999999996 344444433  234455 5777777211 23489999999999999999


Q ss_pred             EEEeeCCCceEEE
Q 044581          163 LVDRDLDRETGVV  175 (203)
Q Consensus       163 Li~iD~~k~~a~V  175 (203)
                      ++-++..  .+++
T Consensus       480 VvrVe~~--~vi~  490 (1024)
T KOG1999|consen  480 VVRVEQG--DVIL  490 (1024)
T ss_pred             EEEEeCC--eEEE
Confidence            9999977  5555

>TIGR01956 NusG_myco NusG family protein

Probab=90.61  E-value=0.7  Score=41.52  Aligned_cols=49  Identities=20%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECC--CCcEEEeeccch
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDAD--THELVNVKLEQI  191 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~--~~~i~~l~~ddv  191 (203)
                      +..|+.|.|+.|.+.|..|.+.++|.++..+.|.++-  ....+.|+|++|
T Consensus       206 f~vGd~VrI~dGPF~GfeG~I~eid~~k~Rv~VlV~IfGR~TpVeL~~~qV  256 (258)
T TIGR01956       206 FRVGNFVKIVDGPFKGIVGKIKKIDQEKKKAIVEVEILGKSVDVDLNFKHL  256 (258)
T ss_pred             CCCCCEEEEEecCCCCcEEEEEEEeCCCCEEEEEEEecCCcEEEEEchHHE
Confidence            5679999999999999999999999776677777654  223456887776

This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.

>PTZ00223 40S ribosomal protein S4; Provisional

Probab=89.94  E-value=2.6  Score=38.24  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             ccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeC
Q 044581          132 GVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDL  168 (203)
Q Consensus       132 ~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~  168 (203)
                      +++...+.-.+| ..|..+||..|.|.|.+|++.++..
T Consensus       160 ~l~~~kI~~~ikfe~G~l~~vtgG~n~GriG~I~~i~~  197 (273)
T PTZ00223        160 NVKEKKVVDLIKNRNGKVVMVTGGANRGRIGEIVSIER  197 (273)
T ss_pred             ECCCCeeeEEEecCCCCEEEEECCeeceeEEEEEEEEe
Confidence            445443444444 6688999999999999999999954

>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function

Probab=89.13  E-value=1.2  Score=31.09  Aligned_cols=52  Identities=15%  Similarity=0.059  Sum_probs=30.7

Q ss_pred             ccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCcee
Q 044581           85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLE  139 (203)
Q Consensus        85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LE  139 (203)
                      +.||..|+|++-   +.-||+-.|.|..|.+...+.+.=..+=+.+..+.-+.||
T Consensus         2 ilPG~~V~V~n~---~~~Y~~y~G~VQRvsdgkaaVLFEGGnWdKlvTf~l~eLe   53 (53)
T PF11623_consen    2 ILPGSTVRVKNP---NDIYYGYEGFVQRVSDGKAAVLFEGGNWDKLVTFRLSELE   53 (53)
T ss_dssp             --TT-EEEE--T---TSTTTT-EEEEEEEETTEEEEEEEETTEEEEEEEEGGGEE
T ss_pred             ccCCCEEEEeCC---CCccchheEEEEEeeCCeEEEEecCCCceEEEEEEhhhCC
Confidence            568999999986   5689999999999986554443322221333366666665

Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.

>PF15591 Imm17: Immunity protein 17

Probab=86.31  E-value=1.4  Score=32.64  Aligned_cols=50  Identities=14%  Similarity=0.176  Sum_probs=37.0

Q ss_pred             EEEEeecccCCCceecceEEEEEecCCC----eEEEEecCCCceEeccccCceee
Q 044581           90 RVRIISKELKSGRLYLKKGEVVDVVGPT----MCDISMDESGELIQGVDQDLLET  140 (203)
Q Consensus        90 ~VRIidk~~~~Gk~y~kKGvV~dV~~~~----~c~V~l~d~g~~v~~V~q~~LET  140 (203)
                      +|+|.+..-++.+++|++|+|+.....+    -.+|.+-+..... .++.+.|+|
T Consensus        10 ~V~v~~s~p~~~ei~Gk~GVVlG~SeeD~~~~gY~Vli~d~e~~~-~~ee~~l~~   63 (74)
T PF15591_consen   10 EVEVVRSCPCDAEIWGKRGVVLGISEEDGGNFGYSVLIFDMECCW-YIEEDELEA   63 (74)
T ss_pred             EEEEeccCcchhhhcCceeEEEEEecCCCcEEEEEEEEeeeeeEE-EechHHeee
Confidence            6888875555789999999999986532    3556666665555 788888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
2ckk_A	127	High Resolution Crystal Structure Of The Human Kin1		2e-05

>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C- Terminal Domain Containing A Kow Motif Kin17 Length = 127

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 70  ESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVV-DVVGPTMCDISMDESGE 128
           E ++R    +Y   WL+  I V+II+K+L  G  Y KK  +V +V+      + M +SG+
Sbjct: 3   EEKKRTARTDY---WLQPEIIVKIITKKL--GEKYHKKKAIVKEVIDKYTAVVKMIDSGD 57
Query: 129 LIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNL 163
            ++ +DQ  LET +P  G  +LVL G ++G  G L
Sbjct: 58  KLK-LDQTHLETVIPAPGKRILVLNGGYRGNEGTL 91
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2ckk_A	127	KIN17; beta barrel, ribosomal protein, ribonucleop	2e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Length = 127

 Score =  102 bits (255), Expect = 2e-28
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 6/128 (4%)

Query: 71  SERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELI 130
            E  +        WL+  I V+II+K+L   + + KK  V +V+      + M +SG+ +
Sbjct: 1   GEEEKKRTARTDYWLQPEIIVKIITKKLG-EKYHKKKAIVKEVIDKYTAVVKMIDSGDKL 59

Query: 131 QGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR----DADTHELVNV 186
           + +DQ  LET +P  G  +LVL G ++G  G L   +    +  +           +  +
Sbjct: 60  K-LDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGI 118

Query: 187 KLEQIAEY 194
           + E I++ 
Sbjct: 119 QYEDISKL 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 36/218 (16%)

Query: 4   IGKNSKGNVKIREFGKKSFVSD----DV------VVVKKEKKKDELKKSGDRDNKHNQES 53
            G++      I    + +FV +    DV      ++ K+E   D +  S D     +   
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAV---SGTL 65

Query: 54  RNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDV 113
           R       +Q     +  E      NY   +L S I+       + + R+Y+++ + +  
Sbjct: 66  RLFWTLLSKQEEMVQKFVE-EVLRINY--KFLMSPIKTEQRQPSMMT-RMYIEQRDRLYN 121

Query: 114 VGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRH---KGVYGNLVDRDLDR 170
                   ++    +    + Q LLE     R    +++ G     K      V      
Sbjct: 122 DNQVFAKYNV-SRLQPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 171 ET----GV----VRDADTHELVNVKLEQIAEYIGDPSY 200
           +      +    +++ ++ E V   L+++   I DP++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNW 213

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 31  KKEKKKDELKKSGDRDNKHNQESRNSEKSEKQQANKRSRE----SERRED 76
             +  + E ++   +D       R SE+ EK + N R  +     +   D
Sbjct: 104 ASKVMEQEWREKAKKD-LEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2ckk_A	127	KIN17; beta barrel, ribosomal protein, ribonucleop	100.0
1nz9_A	58	Transcription antitermination protein NUSG; transc	96.95
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	96.93
2e70_A	71	Transcription elongation factor SPT5; KOW motif, s	96.57
3p8b_B	152	Transcription antitermination protein NUSG; transc	96.16
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	95.69
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	95.42
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	95.37
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	95.23
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	95.11
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	95.03
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	94.82
2jvv_A	181	Transcription antitermination protein NUSG; transc	94.7
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	94.62
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	94.58
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	94.57
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	94.34
2jz2_A	66	SSL0352 protein; SH3-like, synechocystis SP. PCC 6	92.02
2qqr_A	118	JMJC domain-containing histone demethylation prote	91.97
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	90.14
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	90.08
1m1h_A	248	Transcription antitermination protein NUSG; transc	89.19
2e70_A	71	Transcription elongation factor SPT5; KOW motif, s	87.2
3kbg_A	213	30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR2	85.1
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	84.44
2xzm_W	260	40S ribosomal protein S4; ribosome, translation; 3	83.27
2joy_A	96	50S ribosomal protein L14E; protein solution struc	83.08
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	82.43
2xdp_A	123	Lysine-specific demethylase 4C; oxidoreductase, hi	81.36
3u5c_E	261	RP5, S7, YS6, 40S ribosomal protein S4-A; translat	81.24
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	80.47
3j20_E	243	30S ribosomal protein S4E; archaea, archaeal, KINK	80.37

>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}

Probab=100.00  E-value=5.5e-37  Score=243.44  Aligned_cols=117  Identities=27%  Similarity=0.364  Sum_probs=108.4

Q ss_pred             ccCCCCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEeccc
Q 044581           77 NYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRH  156 (203)
Q Consensus        77 ~~~~~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~  156 (203)
                      +.+++.+||+|+|+|||++++|++| ||++||+|++|+++++|+|+|+++|+.+ .|+|+|||||||+.|++||||+|+|
T Consensus         7 ~~~~~~~Wl~~~I~Vrii~k~~~~g-~y~~KgvV~~V~~~~~c~V~l~~~g~~v-~v~q~~LETViP~~g~~V~Iv~G~~   84 (127)
T 2ckk_A            7 RTARTDYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKL-KLDQTHLETVIPAPGKRILVLNGGY   84 (127)
T ss_dssp             -CCCCSCCCCTTBEEEECCSTTCGG-GTTCEEEEEEEETTTEEEEEETTTCCEE-EEEGGGEEECCCCTTCEEEECSSTT
T ss_pred             ccCCCCCcccCCeEEEEEEccCCCc-ccCceEEEEEecCCCeEEEEECCCCCEE-EEchHHcEEecCCCCCEEEEEeccc
Confidence            4567899999999999999999777 9999999999999999999999999988 8999999999999999999999999


Q ss_pred             cCcEEEEEEeeCCCceEEEEECC---CCcEE-Eeeccchhccc
Q 044581          157 KGVYGNLVDRDLDRETGVVRDAD---THELV-NVKLEQIAEYI  195 (203)
Q Consensus       157 rG~~G~Li~iD~~k~~a~V~L~~---~~~i~-~l~~ddvck~~  195 (203)
                      ||++|+|+++|.++++|+|+|++   ++.++ .|+|||||+|+
T Consensus        85 rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~  127 (127)
T 2ckk_A           85 RGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA  127 (127)
T ss_dssp             TTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred             CCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence            99999999999999999999986   25455 69999999985

>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4

Probab=96.95  E-value=0.0023  Score=43.06  Aligned_cols=52  Identities=19%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             cCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCc--EEEeeccchhc
Q 044581          142 LPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHE--LVNVKLEQIAE  193 (203)
Q Consensus       142 IPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~--i~~l~~ddvck  193 (203)
                      ....|+.|.|+.|.+.|..|++.++|.++..+.|.++--+.  .+.|+|++|-+
T Consensus         4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek   57 (58)
T 1nz9_A            4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK   57 (58)
T ss_dssp             SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred             ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence            45679999999999999999999999988788777655333  35688887654

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.93  E-value=0.00076  Score=46.17  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             ecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEEC--CCCcEEEeeccchhcc
Q 044581          141 ALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDA--DTHELVNVKLEQIAEY  194 (203)
Q Consensus       141 VIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~--~~~~i~~l~~ddvck~  194 (203)
                      +-+..|+.|.|+.|+++|..|++.++|.+  .+.|.+.  .-...+.|+|.+|.|+
T Consensus         6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~~tpvel~~~qv~K~   59 (59)
T 2e6z_A            6 SGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDLKDMLEFPAQELRKY   59 (59)
T ss_dssp             SSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSCCSCEEEETTTEEEC
T ss_pred             ccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCCCceEEEcHHHEEEC
Confidence            34577999999999999999999999987  6777664  2234678999998775

>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.57  E-value=0.0046  Score=44.34  Aligned_cols=49  Identities=22%  Similarity=0.228  Sum_probs=42.7

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhc
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAE  193 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck  193 (203)
                      |..|..|.|..|.|+|..|.+.+.+..  .|.|+|.+...++.++.++|+-
T Consensus        18 ~liGktV~I~kGpyKG~~GiVkd~t~~--~~RVELhs~~K~VtV~r~~l~~   66 (71)
T 2e70_A           18 ELIGQTVRISQGPYKGYIGVVKDATES--TARVELHSTCQTISVDRQRLTT   66 (71)
T ss_dssp             SSTTSEEEECSSTTTTCEEEEEEECSS--CEEEEESSSCCEEEECTTTEEE
T ss_pred             ccCCCEEEEeccCCCCeEEEEEECCCC--eEEEEecCCceEEEEEhhhccc
Confidence            345788999999999999999999987  7999999888889999888843

>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D

Probab=96.16  E-value=0.013  Score=46.12  Aligned_cols=55  Identities=24%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             cCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhcccC
Q 044581          142 LPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAEYIG  196 (203)
Q Consensus       142 IPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck~~g  196 (203)
                      -+..|+.|.|+.|.++|..|.+.++|.++..+.|.+..-+  .-+.|+|++|-++..
T Consensus        91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~  147 (152)
T 3p8b_B           91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISK  147 (152)
T ss_dssp             TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEEC
T ss_pred             cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecc
Confidence            3466999999999999999999999999999999987633  357899999988754

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=95.69  E-value=0.021  Score=40.73  Aligned_cols=61  Identities=20%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             CceEeccccCceeeecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccch
Q 044581          127 GELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQI  191 (203)
Q Consensus       127 g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddv  191 (203)
                      |..+ .++.+.|.-.. +.|+.|+|+.|.|.|.+|.++.++.+  .+++--+.+..-+.+.-.||
T Consensus         4 ~~~i-~~p~~~LrK~F-~~GDHVkVi~G~~~getGlVV~v~~d--~v~v~SD~t~~Ei~V~~~dL   64 (69)
T 2do3_A            4 GSSG-EFPAQELRKYF-KMGDHVKVIAGRFEGDTGLIVRVEEN--FVILFSDLTMHELKVLPRDL   64 (69)
T ss_dssp             CSCC-CCCCCCCCSSC-CTTCEEEESSSTTTTCEEEEEEECSS--CEEEEESSSCSEEEECTTSE
T ss_pred             CcEE-EEcHHHceeec-cCCCeEEEeccEEcCceEEEEEEeCC--EEEEEeCCCCCEEEEEhHHh
Confidence            4444 45555554333 34899999999999999999999977  55553333443344444444

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=95.42  E-value=0.016  Score=45.27  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=31.0

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRD  177 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L  177 (203)
                      +.|+.|+||.|.++|..|+++.++..++.++|+-
T Consensus        44 kkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg   77 (120)
T 1vq8_T           44 NAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED   77 (120)
T ss_dssp             CTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT
T ss_pred             cCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC
Confidence            5699999999999999999999999988888753

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=95.37  E-value=0.021  Score=42.88  Aligned_cols=31  Identities=32%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             CCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       146 g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      |+.|+||.|.++|..|++++++..++.++|+
T Consensus         1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe   31 (96)
T 2ftc_N            1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG   31 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence            6899999999999999999999998888875

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=95.23  E-value=0.02  Score=44.78  Aligned_cols=33  Identities=36%  Similarity=0.464  Sum_probs=30.0

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus        47 kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE   79 (121)
T 3j21_U           47 RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE   79 (121)
T ss_dssp             CSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred             ccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence            568999999999999999999999998887764

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=95.11  E-value=0.019  Score=45.25  Aligned_cols=33  Identities=30%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus        51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE   83 (127)
T 3u5e_Y           51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD   83 (127)
T ss_dssp             CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred             cCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence            678999999999999999999999998888876

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=95.03  E-value=0.02  Score=44.24  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRD  177 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L  177 (203)
                      +.|+.|+||.|.++|..|++++++.+++.++|+-
T Consensus        17 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG   50 (115)
T 2zjr_R           17 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG   50 (115)
T ss_dssp             CTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS
T ss_pred             cCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC
Confidence            4589999999999999999999999988888763

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=94.82  E-value=0.025  Score=43.53  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|++++++..++.++|+
T Consensus         8 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE   40 (110)
T 3v2d_Y            8 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE   40 (110)
T ss_dssp             CTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred             CCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence            468999999999999999999999998888765

>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G

Probab=94.70  E-value=0.039  Score=44.47  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=38.7

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEEC--CCCcEEEeeccchhc
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDA--DTHELVNVKLEQIAE  193 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~--~~~~i~~l~~ddvck  193 (203)
                      ..|+.|.|+.|.+.|..|++.++|.++..+.|.+.  .....+.|+|++|-+
T Consensus       129 ~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qvek  180 (181)
T 2jvv_A          129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK  180 (181)
T ss_dssp             CTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEEE
T ss_pred             CCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEEE
Confidence            46899999999999999999999988767755543  322345688887754

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=94.62  E-value=0.036  Score=42.04  Aligned_cols=32  Identities=31%  Similarity=0.437  Sum_probs=28.8

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|++++++.+ +.++|+
T Consensus         5 kkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe   36 (102)
T 3r8s_U            5 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE   36 (102)
T ss_dssp             CSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred             cCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence            46899999999999999999999998 787765

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=94.58  E-value=0.037  Score=44.07  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus        50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE   82 (135)
T 4a17_S           50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVE   82 (135)
T ss_dssp             CTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred             cCCCEEEEeecCCCCceeeEEEEEcCCCEEEEe
Confidence            568999999999999999999999998887764

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=94.34  E-value=0.038  Score=44.41  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             CCCCcEEEEeccccCcE-EEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVY-GNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~-G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|.. |+++.++..++.++|.
T Consensus        50 kkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE   83 (145)
T 2zkr_t           50 RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE   83 (145)
T ss_dssp             CTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred             CCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence            56899999999999999 9999999998888775

>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A

Probab=92.02  E-value=0.54  Score=33.04  Aligned_cols=58  Identities=16%  Similarity=0.099  Sum_probs=42.8

Q ss_pred             ccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCC
Q 044581           85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRR  145 (203)
Q Consensus        85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~  145 (203)
                      +.||..|+|++-   +.-||+-.|.|..|.+...+.+.=..+=+.+..+.-+.||.+-+..
T Consensus         2 ilPG~~V~V~np---~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~~   59 (66)
T 2jz2_A            2 IFPGATVRVTNV---DDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPIL   59 (66)
T ss_dssp             CCTTCEEEECCT---TSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCCC
T ss_pred             ccCCCEEEEeCC---CCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceeccccc
Confidence            569999999976   5689999999999996555544433332445589999999876543

>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*

Probab=91.97  E-value=1.5  Score=33.95  Aligned_cols=89  Identities=20%  Similarity=0.282  Sum_probs=56.8

Q ss_pred             CCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceee------ecCCCCCcEEEEe--ccccCcEEEEEEeeCCC
Q 044581           99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLET------ALPRRGGPVLVLY--GRHKGVYGNLVDRDLDR  170 (203)
Q Consensus        99 ~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LET------VIPk~g~~V~VV~--G~~rG~~G~Li~iD~~k  170 (203)
                      ++|+||  +|.|+++.....|.|.++|+ ....++..+.+..      =.|..|..|.|..  |..  .-|+.++.....
T Consensus        17 ~ngryy--~~~V~~~~~~~~y~V~F~Dg-S~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~--y~a~f~g~~~~~   91 (118)
T 2qqr_A           17 KNGRFY--QCEVVRLTTETFYEVNFDDG-SFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQV--YGAKFVASHPIQ   91 (118)
T ss_dssp             TTSSEE--EEEEEEEEEEEEEEEEETTS-CEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCE--EEEEEEEEEEEE
T ss_pred             CCCCEE--eEEEEEEeeEEEEEEEcCCC-CccCCCCHhhcccccccccCCCCCCCEEEEEcCCCCE--eeeEEeceeEEE
Confidence            389999  89999998778889998854 3333455444432      3788899999985  432  224444433321


Q ss_pred             ceEEEEECCCCcEEEeeccchhcc
Q 044581          171 ETGVVRDADTHELVNVKLEQIAEY  194 (203)
Q Consensus       171 ~~a~V~L~~~~~i~~l~~ddvck~  194 (203)
                       .-.|.++ |+..+.++=++|.-+
T Consensus        92 -~Y~V~fe-Dgs~~~~kR~~iyt~  113 (118)
T 2qqr_A           92 -MYQVEFE-DGSQLVVKRDDVYTL  113 (118)
T ss_dssp             -EEEEEET-TSCEEEECGGGEEET
T ss_pred             -EEEEEEC-CCCEEEEcHHHeecc
Confidence             3346665 456777777777644

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=90.14  E-value=0.042  Score=46.07  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=29.6

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.||.|+||.|.++|..|+++.++.+++.++|+
T Consensus        70 kKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVE  102 (191)
T 3bbo_W           70 KVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK  102 (191)
T ss_dssp             CCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred             ecCCEEEEeecCCCCceEEEEEEECCCCEEEEe
Confidence            469999999999999999999999988777764

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=90.08  E-value=0.43  Score=42.96  Aligned_cols=51  Identities=16%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhc
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAE  193 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck  193 (203)
                      ...|+.|.|+.|.+.|..|++.++|.++..+.|.+.--+  ..+.|+|++|-+
T Consensus       299 f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek  351 (352)
T 2xhc_A          299 FKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEK  351 (352)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEEC
T ss_pred             CCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEE
Confidence            357999999999999999999999998777766654322  345788888754

>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A

Probab=89.19  E-value=0.072  Score=45.85  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             eecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEE--CCCCcEEEeeccchhc
Q 044581          140 TALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRD--ADTHELVNVKLEQIAE  193 (203)
Q Consensus       140 TVIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L--~~~~~i~~l~~ddvck  193 (203)
                      .+.+..|+.|+|+.|.+.|..|++.++|.++..+.|.+  ......+.|+|++|-+
T Consensus       192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~~~vek  247 (248)
T 1m1h_A          192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEK  247 (248)
T ss_dssp             --------------------------------------------------------
T ss_pred             cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcHHHEEe
Confidence            44566799999999999999999999998876666554  3333346788887754

>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.20  E-value=1.4  Score=31.30  Aligned_cols=45  Identities=24%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             CceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCce
Q 044581           87 SHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLL  138 (203)
Q Consensus        87 ~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~L  138 (203)
                      .+=.|+|.     .|.|-+..|+|+|+. ...|.|+|......| +|+-++|
T Consensus        20 iGktV~I~-----kGpyKG~~GiVkd~t-~~~~RVELhs~~K~V-tV~r~~l   64 (71)
T 2e70_A           20 IGQTVRIS-----QGPYKGYIGVVKDAT-ESTARVELHSTCQTI-SVDRQRL   64 (71)
T ss_dssp             TTSEEEEC-----SSTTTTCEEEEEEEC-SSCEEEEESSSCCEE-EECTTTE
T ss_pred             CCCEEEEe-----ccCCCCeEEEEEECC-CCeEEEEecCCceEE-EEEhhhc
Confidence            46678888     678888999999997 578999998777777 7888888

>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}

Probab=85.10  E-value=6.7  Score=33.14  Aligned_cols=80  Identities=11%  Similarity=0.073  Sum_probs=49.8

Q ss_pred             CcccCce----EEEEeecccCCCceecceEEEEEecCCCeEEEEecC----C-CceEeccccCceeeecC-CCCCcEEEE
Q 044581           83 PWLRSHI----RVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDE----S-GELIQGVDQDLLETALP-RRGGPVLVL  152 (203)
Q Consensus        83 ~Wl~~~I----~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d----~-g~~v~~V~q~~LETVIP-k~g~~V~VV  152 (203)
                      .|+.++-    ..||.++      +.+++|+..=+.-++.. +..++    . +.++.+++...+--.+| ..|.-+||.
T Consensus        76 ~~I~~eea~~KLcKV~~k------~~~~~G~~~l~~HDGrt-i~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvt  148 (213)
T 3kbg_A           76 MKETKERASMKLLKVRSK------VIAPGNRIQLGTHDGRT-FITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYIT  148 (213)
T ss_dssp             EECCTTGGGEEEEEEEEE------EEEGGGEEEEEETTSCE-EEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEEC
T ss_pred             EEeChhHccceEEEEEEE------EEecCCeeEEEecCccE-EEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEE
Confidence            3655542    3566543      44566766666544433 33332    1 23343555555555565 557889999


Q ss_pred             eccccCcEEEEEEeeCC
Q 044581          153 YGRHKGVYGNLVDRDLD  169 (203)
Q Consensus       153 ~G~~rG~~G~Li~iD~~  169 (203)
                      .|.+.|.+|++.++..-
T Consensus       149 gG~n~GriG~I~~ie~~  165 (213)
T 3kbg_A          149 AGSHVNQTGTISKIEAK  165 (213)
T ss_dssp             SSTTTTCEEEEEEECCC
T ss_pred             CCCcceEEEEEEEEEEc
Confidence            99999999999999754

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=84.44  E-value=2.6  Score=29.83  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=40.7

Q ss_pred             cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceee
Q 044581           84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLET  140 (203)
Q Consensus        84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LET  140 (203)
                      -+.+|=.|||+     +|+|-+..|.|+.|. +..|++..+-+.+.+ .|...+|+-
T Consensus        17 ~F~~GDHVkVi-----~G~~~getGlVV~v~-~d~v~v~SD~t~~Ei-~V~~~dL~~   66 (69)
T 2do3_A           17 YFKMGDHVKVI-----AGRFEGDTGLIVRVE-ENFVILFSDLTMHEL-KVLPRDLQL   66 (69)
T ss_dssp             SCCTTCEEEES-----SSTTTTCEEEEEEEC-SSCEEEEESSSCSEE-EECTTSEEE
T ss_pred             eccCCCeEEEe-----ccEEcCceEEEEEEe-CCEEEEEeCCCCCEE-EEEhHHhhh
Confidence            46778899999     789999999999997 567778888777777 677777753

>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W

Probab=83.27  E-value=7.9  Score=33.66  Aligned_cols=45  Identities=13%  Similarity=0.164  Sum_probs=30.8

Q ss_pred             ccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeCC---CceEEEE
Q 044581          132 GVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDLD---RETGVVR  176 (203)
Q Consensus       132 ~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~~---k~~a~V~  176 (203)
                      +++...+.-.+| ..|.-+||..|.|.|.+|++.++..-   ...+.|+
T Consensus       165 dl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vk  213 (260)
T 2xzm_W          165 DLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVK  213 (260)
T ss_dssp             ETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEE
T ss_pred             eCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEE
Confidence            455334445566 44678999999999999999986532   2345554

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=83.08  E-value=1.8  Score=31.99  Aligned_cols=51  Identities=18%  Similarity=0.113  Sum_probs=34.7

Q ss_pred             cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecC--CCceEeccccCcee
Q 044581           84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDE--SGELIQGVDQDLLE  139 (203)
Q Consensus        84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d--~g~~v~~V~q~~LE  139 (203)
                      .+.+|=+|.+.     .|+|.|++++|+++++.+.+-|.-++  ++.....+.+.||.
T Consensus         3 ~v~~GrVv~~~-----~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~   55 (96)
T 2joy_A            3 AIEVGRICVKV-----KGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLE   55 (96)
T ss_dssp             SSSTTEEEECS-----SSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCE
T ss_pred             ccccCEEEEEe-----ecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEE
Confidence            46678777665     68999999999999987776665443  22223345555554

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.43  E-value=2  Score=30.43  Aligned_cols=43  Identities=7%  Similarity=0.144  Sum_probs=34.5

Q ss_pred             CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCC
Q 044581          100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRG  146 (203)
Q Consensus       100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g  146 (203)
                      ||.||  .|.|.+|.+.++|+|.+.+-  ..+.|+.++|-++.|...
T Consensus        22 Dg~~Y--~A~I~~v~~~~~~~V~f~Dy--n~e~v~~~~lrplp~~~k   64 (74)
T 2equ_A           22 DCRYY--PAKIEAINKEGTFTVQFYDG--VIRCLKRMHIKAMPEDAK   64 (74)
T ss_dssp             SSSEE--EEEEEEESTTSSEEEEETTS--CEEEECGGGEECCCGGGT
T ss_pred             CCCEE--EEEEEEECCCCEEEEEEecC--CeEEecHHHCeeCChhHh
Confidence            78888  58999998768999999865  456799999988876543

>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}

Probab=81.36  E-value=3.7  Score=31.96  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             CCCceecceEEEEEecCCCeEEEEecCCCceEeccccCc------eeeecCCCCCcEEEEe--ccccCcEEEEEEeeCCC
Q 044581           99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDL------LETALPRRGGPVLVLY--GRHKGVYGNLVDRDLDR  170 (203)
Q Consensus        99 ~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~------LETVIPk~g~~V~VV~--G~~rG~~G~Li~iD~~k  170 (203)
                      .+|.||.  |.|+++.....|.|.++|+. ...++..+.      +.-=.|..|..|.|..  |..-  -|+.++.....
T Consensus        18 ~ngryy~--~~V~~~~~~~~y~V~F~DgS-~s~dl~PedIvs~dc~~~GpP~~G~~V~V~W~DG~~y--~a~f~g~~~~~   92 (123)
T 2xdp_A           18 RNTRYYS--CRVMAVTSQTFYEVMFDDGS-FSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLY--GAKYFGSNIAH   92 (123)
T ss_dssp             CCCCCCC--CEEEEEEEEEEEEEEETTSC-EEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEE--EEEEEEEEEEE
T ss_pred             CCCcEEe--EEEEEEeeEEEEEEEcCCCC-ccCCCCHhHcccccccccCCCCCCCEEEEEcCCCCEE--eEEEeeeeeEE
Confidence            4788874  67888877778888888543 333343333      3335788899999986  6532  25666654331


Q ss_pred             ceEEEEECCCCcEEEeeccchhccc
Q 044581          171 ETGVVRDADTHELVNVKLEQIAEYI  195 (203)
Q Consensus       171 ~~a~V~L~~~~~i~~l~~ddvck~~  195 (203)
                       .-.|.++ |+..+.+.=++|+-.-
T Consensus        93 -~YtV~Fe-Dgs~~~~kR~~iyt~~  115 (123)
T 2xdp_A           93 -MYQVEFE-DGSQIAMKREDIYTLD  115 (123)
T ss_dssp             -EEEEECT-TSCEEEEEGGGCCCSS
T ss_pred             -EEEEEEC-CCCeEEecHHHccccc
Confidence             3346665 4678888888887653

>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E

Probab=81.24  E-value=3.6  Score=35.80  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             eEeccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeC
Q 044581          129 LIQGVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDL  168 (203)
Q Consensus       129 ~v~~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~  168 (203)
                      ++.+++...+--.+| ..|.-+||..|.|.|.+|++.++..
T Consensus       160 v~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~  200 (261)
T 3u5c_E          160 VKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKER  200 (261)
T ss_dssp             EEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEEC
T ss_pred             EEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence            344555555555566 4578899999999999999999875

>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=80.37  E-value=4.4  Score=34.92  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=33.8

Q ss_pred             EeccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeCC----CceEEEEEC
Q 044581          130 IQGVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDLD----RETGVVRDA  178 (203)
Q Consensus       130 v~~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~~----k~~a~V~L~  178 (203)
                      +.+++...+--.+| ..|..+||..|.|.|.+|++.++..-    -..+.|+-.
T Consensus       165 ~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~  218 (243)
T 3j20_E          165 LMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDE  218 (243)
T ss_dssp             EEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEES
T ss_pred             EEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcC
Confidence            33455445544555 55788999999999999999999742    235555533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	97.1
d1nppa2	58	N-utilization substance G protein NusG, C-terminal	96.92
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	95.99
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	95.72
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	95.25
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	92.35
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	92.34
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	86.7

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00044  Score=45.81  Aligned_cols=50  Identities=20%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhc
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAE  193 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck  193 (203)
                      +.|+.|+|+.|.+.|..|++.++|.++..+.|.++--+  ..+.|++++|-|
T Consensus         6 ~~Gd~V~I~~GpF~g~~g~V~~i~~~k~rv~V~v~ifGr~t~vel~~~~ieK   57 (58)
T d1nz9a_           6 REGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK   57 (58)
T ss_dssp             CTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred             cCCCEEEEeccCCCCCEEEEEEEcCCCCEEEEEEEecCCCceEeeCHHHEEc
Confidence            46999999999999999999999999888877765423  346799988754

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.92  E-value=0.0007  Score=44.76  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=40.6

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhcc
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAEY  194 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck~  194 (203)
                      +.|+.|.|+.|++.|..|++.++|.++..+.|.++--+  ..+.+++++|-|+
T Consensus         6 ~~Gd~V~I~~GpF~g~~g~V~~i~~~~~rv~V~v~~fGr~t~vel~~~~veki   58 (58)
T d1nppa2           6 EKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI   58 (58)
T ss_dssp             CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEEEETTEEEEEEEEGGGEEEC
T ss_pred             cCCCEEEEcccCCCCCEEEEEEEcCCCCEEEEEEeecCCCceEeeCHHHEEeC
Confidence            35999999999999999999999988777777664323  3457999888653

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0072  Score=40.64  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=35.1

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhc
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAE  193 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck  193 (203)
                      +.|+.|+|+.|.|.|.+|.++.++.+  .++|--+.+..-+.+...||.+
T Consensus        12 ~~GDhVkVi~G~~~g~tGlVV~v~~~--~v~~~SD~t~~Ei~V~~~dL~~   59 (62)
T d2do3a1          12 KMGDHVKVIAGRFEGDTGLIVRVEEN--FVILFSDLTMHELKVLPRDLQL   59 (62)
T ss_dssp             CTTCEEEESSSTTTTCEEEEEEECSS--CEEEEESSSCSEEEECTTSEEE
T ss_pred             CCCCeEEEeccEEcCccEEEEEEeCC--EEEEEeCCCCCEEEEehHHhhh
Confidence            35899999999999999999999866  5665444345555555555543

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.72  E-value=0.005  Score=46.19  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      =+.|+.|+||.|.++|.+|+++.++..++.+.|+
T Consensus        42 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Ve   75 (119)
T d1vqot1          42 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE   75 (119)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred             eeCCCEEEEeecCCCCCcceEEEEECCCCEEEEe
Confidence            3679999999999999999999999998887764

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.25  E-value=0.006  Score=45.14  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=30.5

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|..|+++.++..+..++|+
T Consensus        14 kkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVe   46 (110)
T d2zjrr1          14 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE   46 (110)
T ss_dssp             CTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred             eCCCEEEEeecCCCCcceEEEEEECCCCEEEEe
Confidence            469999999999999999999999998888876

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=92.35  E-value=0.0061  Score=44.45  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|.||.|.++|..|++++++..+..++|.
T Consensus         7 kkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVe   39 (101)
T d2j01y1           7 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE   39 (101)
T ss_dssp             CCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTT
T ss_pred             ECCCEEEEeeCCCCCCeEEEEEEECCCCEEEEE
Confidence            468999999999999999999999998777654

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=92.34  E-value=0.05  Score=39.27  Aligned_cols=32  Identities=31%  Similarity=0.437  Sum_probs=27.3

Q ss_pred             CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581          144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR  176 (203)
Q Consensus       144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~  176 (203)
                      +.|+.|+||.|.++|.+|+++.+..+ ..++|+
T Consensus         3 kkGD~V~VisGkdKGK~G~V~~V~~~-~~viVe   34 (99)
T d2gycs1           3 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE   34 (99)
T ss_dssp             CTTSEEECSSSTTTTCEEEEEEECTT-SEEEET
T ss_pred             cCCCEEEEeeCCCCCCceEEEEEECC-CeEEEe
Confidence            46899999999999999999999764 566654

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.84  Score=30.06  Aligned_cols=49  Identities=20%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCcee
Q 044581           84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLE  139 (203)
Q Consensus        84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LE  139 (203)
                      .+.+|=.|||+     +|+|-|..|.|+.|. +..+++..+-+++.+ .|...+|+
T Consensus        10 ~F~~GDhVkVi-----~G~~~g~tGlVV~v~-~~~v~~~SD~t~~Ei-~V~~~dL~   58 (62)
T d2do3a1          10 YFKMGDHVKVI-----AGRFEGDTGLIVRVE-ENFVILFSDLTMHEL-KVLPRDLQ   58 (62)
T ss_dssp             SCCTTCEEEES-----SSTTTTCEEEEEEEC-SSCEEEEESSSCSEE-EECTTSEE
T ss_pred             ccCCCCeEEEe-----ccEEcCccEEEEEEe-CCEEEEEeCCCCCEE-EEehHHhh
Confidence            45678889999     789999999999996 566777777778878 68777775