Citrus Sinensis ID: 044582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MSPEKVNHLPESDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS
Secondary Structure (PSIPRED)
ccccccccccccHHHcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEEEccccccEEEcccccccHHHHHHHHHHHHcccccccccccHHHcccccccEEEEEEEcccccEEEcccccHHHHHHHccccEEEcccHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccEEEEEEccccccHHHEcHHHHccHHHHHHHHHHHHcccEccccccHHHHHHHccccccEEEEEcccccEEEEccccHHHHHHHHHHHHEEcccHHcccccHHHHHccccc
Coil and Loop (DISEMBL)
mspekvnhlpesdtkltlglpgaggechrtkagtkrgfLETVDLNLmsssndnkhceendamastttpatkaqvvgwppvrayrksamkgSCKFVKVAVegapylrkVDLEIYHSYQELLSALEDMFSFLTIRnhvnerkiidnvngveyvptyedkdgdwmlvgdvPWKMFVESCKRVRLMKsseaiglaprtpaknssks
Flexible Loop (DISEMBL)
mspekvnhlpesdtkltlglpgaggechrtkagtkrGFLETVDLNLMSSSNDNKHCEENDAMAstttpatkaqvvgWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHvnerkiidnvngveyVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMksseaiglaprtpaknssks
Low Complexity Region (SEG)
MSPEKVNHLPESDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS
Disordered region (IsUnstruct)
*************************************FL********************************AQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLM********************
Disordered Region (DISOPRED)
******N***ESDTKLTLGL**************************************************************************VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLM********************
Disordered Region (DISEMBL)
***********SDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLA***********
Disordered Region (DISPRO)
*******HLPESDTKLTLGLPG***********************************************TKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL*P**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPEKVNHLPESDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q38832	228	Auxin-responsive protein	yes	no	0.935	0.828	0.502	6e-52
O24407	236	Auxin-responsive protein	no	no	0.930	0.796	0.484	5e-51
P93830	229	Auxin-responsive protein	no	no	0.925	0.816	0.504	4e-50
Q38825	243	Auxin-responsive protein	no	no	0.905	0.753	0.482	9e-49
Q6AT10	212	Auxin-responsive protein	yes	no	0.881	0.839	0.536	2e-47
Q5VRD1	199	Auxin-responsive protein	no	no	0.589	0.597	0.715	4e-47
Q75GK0	233	Auxin-responsive protein	no	no	0.920	0.798	0.438	1e-44
P0C132	277	Auxin-responsive protein	no	no	0.930	0.678	0.438	2e-44
Q9ZSY8	305	Auxin-responsive protein	no	no	0.688	0.455	0.523	4e-44
P13089	243	Auxin-induced protein AUX	no	no	0.930	0.773	0.452	4e-43

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 140/225 (62%), Gaps = 36/225 (16%)

Query: 13  DTKLTLGLPGAGGECHRTKA----GTKRGFLETVDLNLMSSSNDNKHCE--------END 60
           +T+L LGLPG G E   + A    G KRGF ETVDL L   SN   H +        E  
Sbjct: 5   ETELCLGLPG-GTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPKEKT 63

Query: 61  AMASTTTPATKAQVVGWPPVRAYRKSAMK---------------GSCKFVKVAVEGAPYL 105
            +   + P  KAQVVGWPPVR YRK+ M                G+  FVKV+++GAPYL
Sbjct: 64  FLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYL 123

Query: 106 RKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDK 157
           RKVDL++Y SY++L  AL  MFS  T+ ++        +NE K++D +N  EYVP+YEDK
Sbjct: 124 RKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDK 183

Query: 158 DGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           DGDWMLVGDVPW MFVESCKR+R+MK SEAIGLAPR   K  ++S
Sbjct: 184 DGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/231 (48%), Positives = 143/231 (61%), Gaps = 43/231 (18%)

Query: 14  TKLTLGLPGA--GGECHRTKAGTKRGFLETVDL--NLMSSSNDN-KHCEENDAMASTTTP 68
           T+L LGLPG   GGE      G KRGF ETVDL  NL S++ D+    +  +       P
Sbjct: 7   TELRLGLPGGNHGGEMAGKNNG-KRGFSETVDLKLNLSSTAMDSVSKVDLENMKEKVVKP 65

Query: 69  ATKAQVVGWPPVRAYRKSAMKG-----------------------------SCKFVKVAV 99
             KAQVVGWPPVR++RK+ M G                             +  +VKV++
Sbjct: 66  PAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSM 125

Query: 100 EGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYV 151
           +GAPYLRK+DL++Y +YQ+L +AL  MFS  TI N+        +NE K+ID +NG +YV
Sbjct: 126 DGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYV 185

Query: 152 PTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           PTYEDKDGDWMLVGDVPW+MFV+SCKR+R+MK SEAIGLAPR   K  ++S
Sbjct: 186 PTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  197 bits (501), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/222 (50%), Positives = 142/222 (63%), Gaps = 35/222 (15%)

Query: 13  DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLM----------SSSNDNKHCEENDAM 62
           +T+L LGLPG  G+      G KRGF ETVDL L           S+++D    +  +  
Sbjct: 11  ETELCLGLPG--GDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSKEKS 68

Query: 63  ASTTTPA---TKAQVVGWPPVRAYRKSAMKGSCK----------FVKVAVEGAPYLRKVD 109
           A    PA    KAQVVGWPPVR+YRK+ M  SC+          FVKV+++GAPYLRK+D
Sbjct: 69  ACPKDPAKPPAKAQVVGWPPVRSYRKNVMV-SCQKSSGGPEAAAFVKVSMDGAPYLRKID 127

Query: 110 LEIYHSYQELLSALEDMFSFLTIRNH---------VNERKIIDNVNGVEYVPTYEDKDGD 160
           L +Y SY EL +AL +MFS  T+  H         +NERK++D VN  +YVP+YEDKDGD
Sbjct: 128 LRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGD 187

Query: 161 WMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           WMLVGDVPW MFV++CKR+RLMK S+AIGLAPR   K  S++
Sbjct: 188 WMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  192 bits (489), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 137/228 (60%), Gaps = 45/228 (19%)

Query: 14  TKLTLGLPGAGGEC----HRTKAGTKRGFLETVDLNLMSSSN-----DNKHC----EEND 60
           T+L LGLPG G E      ++  G+KRGF ETVDL L   SN     D K+     +E  
Sbjct: 11  TELCLGLPG-GAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKT 69

Query: 61  AMASTTTPATKAQVVGWPPVRAYRKSAM-----------------------KGSCKFVKV 97
            +   + P  KAQVVGWPPVR YRK+ M                             VKV
Sbjct: 70  TLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKV 129

Query: 98  AVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVE 149
           +++GAPYLRKVDL++Y SYQ+L  AL  MFS  T+ N+        +NE K+++ +N  E
Sbjct: 130 SMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSE 189

Query: 150 YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 197
           YVP+YEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEA+GLAPR   K
Sbjct: 190 YVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AT10|IAA15_ORYSJ Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 132/194 (68%), Gaps = 16/194 (8%)

Query: 13  DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTT---PA 69
           DT LTL LPG+      + + +        D    S+++D+     ++ + ST T   P+
Sbjct: 22  DTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDP----DNRLGSTATESPPS 77

Query: 70  TKAQVVGWPPVRAYRKSAMKGSCK-------FVKVAVEGAPYLRKVDLEIYHSYQELLSA 122
            KA+VVGWPPVRA+RK+A+            FVKVAV+GAPYLRKVDLE Y  Y +LL+A
Sbjct: 78  PKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAA 137

Query: 123 LED-MFSFLTIRNHVNER-KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVR 180
           L+D  FS  TIR   NE  K++D V+G EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+R
Sbjct: 138 LQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLR 197

Query: 181 LMKSSEAIGLAPRT 194
           LMKSSEA+ LAPR+
Sbjct: 198 LMKSSEAVNLAPRS 211

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5VRD1|IAA1_ORYSJ Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1

 Score =  187 bits (475), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 104/123 (84%), Gaps = 4/123 (3%)

Query: 73  QVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLT 131
           +VVGWPPVR++RK+A+  + KFVKVAV+GAPYLRKVDLE Y  Y +LL AL+D  FS  T
Sbjct: 76  RVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFT 133

Query: 132 IRNHVN-ERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL 190
           IR   + ERK++D VNG EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSSEA+ L
Sbjct: 134 IRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNL 193

Query: 191 APR 193
           APR
Sbjct: 194 APR 196

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/228 (43%), Positives = 134/228 (58%), Gaps = 42/228 (18%)

Query: 13  DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNL-------------------------- 46
           +T+L LGLPGAG    R+    KRGF ET+DL L                          
Sbjct: 8   ETELRLGLPGAGELAARSSG--KRGFAETIDLKLKLQPAAPAAVSGEEGAQEDKEDADAA 65

Query: 47  ----MSSSNDNKHCEENDAMASTTTP----ATKAQVVGWPPVRAYRKSAMKGSCK---FV 95
                   +  +   ++  + +   P    A KAQVVGWPPVR++RK+ +   CK    V
Sbjct: 66  AAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKCKAAALV 125

Query: 96  KVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDN---VNGVEYVP 152
           KV+++GAPYLRK+D+ +Y SY EL  A ++MF+  TI    + +++ ++    + +EYVP
Sbjct: 126 KVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVP 185

Query: 153 TYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSS 200
           TYEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEAIGLAPR   K  S
Sbjct: 186 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 147/269 (54%), Gaps = 81/269 (30%)

Query: 14  TKLTLGLPGAGGECH------RTKAGTKRGFLETVDLNL--------------------- 46
           T+L LGLPG GG+        R+ +G KRGF ET+DL L                     
Sbjct: 10  TELRLGLPGGGGDGDAAAAAARSSSG-KRGFAETIDLKLKLEPAAAAVDDDDDKEEAAAD 68

Query: 47  --------MSSSNDN-------------KHCEENDAMASTTTP----ATKAQVVGWPPVR 81
                   + + ND+             +   ++  + +   P    A KAQVVGWPPVR
Sbjct: 69  DREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAPKAQVVGWPPVR 128

Query: 82  AYRKSAM-----KG----------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELL 120
           +YRK+ +     KG                +  FVKV+++GAPYLRKVDL++Y SY EL 
Sbjct: 129 SYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELS 188

Query: 121 SALEDMFSFLTIRN-------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFV 173
            ALE MFS  TI N        +NE KI D +NG EYVPTYEDKDGDWMLVGDVPW+MFV
Sbjct: 189 KALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFV 248

Query: 174 ESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           ESCKR+R+MK SEAIGLAPR   K  ++S
Sbjct: 249 ESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 113/172 (65%), Gaps = 33/172 (19%)

Query: 63  ASTTTPATKAQVVGWPPVRAYRKSAMKGS-----------------------CKFVKVAV 99
           +S T PA+KAQVVGWPP+R++RK++M  S                       C +VKV++
Sbjct: 133 SSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSM 192

Query: 100 EGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVE 149
           EGAPYLRK+DL+ Y SY EL SALE MFS  TI          R+ +NE ++ D + G E
Sbjct: 193 EGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSE 252

Query: 150 YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSK 201
           YV TYEDKD DWMLVGDVPW+MF+ SCK++R+MKSSEAIGLAPR   K  S+
Sbjct: 253 YVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 138/241 (57%), Gaps = 53/241 (21%)

Query: 13  DTKLTLGLPGAGGECHRTKAGTKRGFLET-----------VDLNLMSSSND--------- 52
           +T+L LGLPG GG         KRGF ET           VDL L  SS +         
Sbjct: 5   ETELRLGLPGNGG--TEEVLIRKRGFSETETGHEDESATTVDLMLNLSSKEAATTAAAAA 62

Query: 53  ---NKHC----EENDAMASTTTPATKAQVVGWPPVRAYRKSAM--------------KGS 91
              +KH     E+    A    P  K QVVGWPPVR++RK+ +                +
Sbjct: 63  DPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPN 122

Query: 92  CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLT--------IRNHVNERKIID 143
             FVKV+++GAPYLRKVDL++Y SY+EL  +L  MFS  T        +++ +NE K+ D
Sbjct: 123 ASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLND 182

Query: 144 NVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAI--GLAPRTPAKNSSK 201
            +N  +YVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+MK  EAI  GLAPR  AK  ++
Sbjct: 183 LLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNR 242

Query: 202 S 202
           S
Sbjct: 243 S 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
255552973	217	Auxin-responsive protein IAA1, putative	0.995	0.926	0.700	3e-75
224058755	220	predicted protein [Populus trichocarpa]	0.995	0.913	0.656	9e-69
429326562	220	hypothetical protein [Populus tomentosa]	0.995	0.913	0.651	4e-68
110631502	192	AUX/IAA-like protein [Pelargonium x hort	0.900	0.947	0.620	3e-65
297743325	294	unnamed protein product [Vitis vinifera]	0.965	0.663	0.608	9e-63
147815558	210	hypothetical protein VITISV_010217 [Viti	0.965	0.928	0.608	9e-63
359482959	210	PREDICTED: auxin-responsive protein IAA1	0.965	0.928	0.608	9e-63
50404477	211	IAA type protein [Elaeis guineensis]	0.935	0.895	0.618	7e-62
365818539	252	IAA15 [Solanum lycopersicum]	0.915	0.734	0.610	4e-61
22531416	208	IAA16 protein [Gossypium hirsutum]	0.945	0.918	0.595	4e-61

>gi|255552973|ref|XP_002517529.1| Auxin-responsive protein IAA1, putative [Ricinus communis] gi|223543161|gb|EEF44693.1| Auxin-responsive protein IAA1, putative [Ricinus communis]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 171/217 (78%), Gaps = 16/217 (7%)

Query: 1   MSPEKVNHLPESDT--------KLTLGLPGAG--GECHRTKAGTKRGFLETVDLNLMSSS 50
           MSPE   HLPESDT        +LTL LPG       +  K GTKRG+L+TVDLNL S S
Sbjct: 1   MSPESGIHLPESDTATMNFTETELTLALPGESRVSADNGAKIGTKRGYLQTVDLNLGSCS 60

Query: 51  ND--NKHCE--END-AMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYL 105
           +D  NK C   END + A    P +KAQVVGWPPVRAYRK+AMK S KFVKVAV+GAPYL
Sbjct: 61  SDCGNKDCNMPENDVSSAPKKPPVSKAQVVGWPPVRAYRKNAMKSS-KFVKVAVDGAPYL 119

Query: 106 RKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG 165
           RKVDLE+Y+SYQ+LL+ALEDMFS  TIRN++NERKI+D VNGVEYVPTYEDKDGDWM+VG
Sbjct: 120 RKVDLEMYNSYQQLLTALEDMFSCFTIRNYLNERKIMDQVNGVEYVPTYEDKDGDWMMVG 179

Query: 166 DVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           DVPW MFVESCKR+RLMKSSEA GLAPRTP+K SS S
Sbjct: 180 DVPWTMFVESCKRLRLMKSSEATGLAPRTPSKCSSSS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058755|ref|XP_002299625.1| predicted protein [Populus trichocarpa] gi|118485628|gb|ABK94664.1| unknown [Populus trichocarpa] gi|222846883|gb|EEE84430.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 145/221 (65%), Positives = 168/221 (76%), Gaps = 20/221 (9%)

Query: 1   MSPEKVNHLPESD--------TKLTLGLPG-AGGECHRTKAGTKRGFLETVDLNLMSSSN 51
           MSPE  ++L ESD        T+LTLGLPG + G     K   KRGFLETVDLNL  SSN
Sbjct: 1   MSPENGSNLLESDAANVSFKETELTLGLPGESRGLALIEKTSGKRGFLETVDLNLGRSSN 60

Query: 52  -DNKHCE-----ENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYL 105
            D+ H +     E D   +   PA KAQVVGWPPVRAYRK+AMK SCK+VKVAV+GAPYL
Sbjct: 61  VDSDHNKYSGESETDVPNTAKPPAAKAQVVGWPPVRAYRKNAMK-SCKYVKVAVDGAPYL 119

Query: 106 RKVDLEIYHSYQELLSALEDMFSFL--TIRNHVNERKIIDNV--NGVEYVPTYEDKDGDW 161
           RKVDLE+Y+SYQ+LL+AL+DMFS    TIRN++NER I++    NGVEYVPTYEDKDGDW
Sbjct: 120 RKVDLEMYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYEDKDGDW 179

Query: 162 MLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           M++GDVPWKMFVESCKR+RLMKSSEA G APRTP+K SS S
Sbjct: 180 MMLGDVPWKMFVESCKRLRLMKSSEATGFAPRTPSKCSSSS 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326562|gb|AFZ78621.1| hypothetical protein [Populus tomentosa]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 167/221 (75%), Gaps = 20/221 (9%)

Query: 1   MSPEKVNHLPESD--------TKLTLGLPG-AGGECHRTKAGTKRGFLETVDLNLMSSSN 51
           MSPE  ++L ESD        T+LTLGLPG + G     K   KRGFLETVDLNL  SSN
Sbjct: 1   MSPENGSNLLESDAANVSFKETELTLGLPGESRGLALIEKTSGKRGFLETVDLNLGRSSN 60

Query: 52  -DNKHCE-----ENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYL 105
            D+ H +     E D   +   PA KAQVVGWPPVRAYRK+AMKG CK+VKVAV+GAPYL
Sbjct: 61  VDSDHHKYSGESETDVPNTAKPPAAKAQVVGWPPVRAYRKNAMKG-CKYVKVAVDGAPYL 119

Query: 106 RKVDLEIYHSYQELLSALEDMFSFL--TIRNHVNERKIIDNV--NGVEYVPTYEDKDGDW 161
           RKVDLE+Y+SYQ+LL+AL+DMFS    TIRN++NER I++    NGVEYVPTY DKDGDW
Sbjct: 120 RKVDLEMYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYGDKDGDW 179

Query: 162 MLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           M++GDVPWKMFVESCKR+RLMKSSEA G APRTP+K SS S
Sbjct: 180 MMLGDVPWKMFVESCKRLRLMKSSEATGFAPRTPSKCSSSS 220

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110631502|gb|ABG81096.1| AUX/IAA-like protein [Pelargonium x hortorum]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 154/208 (74%), Gaps = 26/208 (12%)

Query: 1   MSPEKVNHLPESD--------TKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSND 52
           MSPE   HLPESD        T+LTLGLPG          GTKRGF E +D++   +S  
Sbjct: 1   MSPENGKHLPESDVGDMNFNDTELTLGLPG-------DSRGTKRGFSEAIDIDKTKTS-- 51

Query: 53  NKHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEI 112
                    ++ +     K QVVGWPPV+A RKS +  +CK+VKVAV+GAPYLRKVDLE+
Sbjct: 52  ---------ISGSAKSPPKTQVVGWPPVKASRKSVVARNCKYVKVAVDGAPYLRKVDLEM 102

Query: 113 YHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMF 172
           Y SYQ+LL ALE++FS LTIRN +NERK++D VNGVEYVPTYEDKDGDWMLVGDVPWKMF
Sbjct: 103 YGSYQQLLEALEELFSCLTIRNCLNERKLMDLVNGVEYVPTYEDKDGDWMLVGDVPWKMF 162

Query: 173 VESCKRVRLMKSSEAIGLAPRTPAKNSS 200
           VESCKRVRLMKSS+A+GLAPRTP++ +S
Sbjct: 163 VESCKRVRLMKSSDAVGLAPRTPSRCTS 190

Source: Pelargonium x hortorum

Species: Pelargonium x hortorum

Genus: Pelargonium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743325|emb|CBI36192.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/212 (60%), Positives = 153/212 (72%), Gaps = 17/212 (8%)

Query: 1   MSPEKVNHLPES--------DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSND 52
           MSP+     PES        DT+LTLGLPGA      TK+GTKRGF +TV LNL    N 
Sbjct: 85  MSPQLPKPSPESSSAGLYFNDTELTLGLPGA------TKSGTKRGFSDTVGLNLRGPCNT 138

Query: 53  N--KHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDL 110
           +   +  END    +  P  K Q+VGWPPV+A RK+  K S K+VKVAV+GAPYLRKVDL
Sbjct: 139 DHASNPSENDVSGDSKPPPAKTQIVGWPPVKASRKNVAKIS-KYVKVAVDGAPYLRKVDL 197

Query: 111 EIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 170
           E+Y SYQ+LL +LEDMFS   IRN++NERK++D V G +Y+PTYED+DGDWMLVGDVPWK
Sbjct: 198 EMYGSYQQLLGSLEDMFSCFPIRNYLNERKLMDPVKGSDYMPTYEDRDGDWMLVGDVPWK 257

Query: 171 MFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           MFVESCKR+RLMKS EAIGLAPR   K +S S
Sbjct: 258 MFVESCKRLRLMKSIEAIGLAPRESQKCTSTS 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815558|emb|CAN70529.1| hypothetical protein VITISV_010217 [Vitis vinifera]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/212 (60%), Positives = 153/212 (72%), Gaps = 17/212 (8%)

Query: 1   MSPEKVNHLPES--------DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSND 52
           MSP+     PES        DT+LTLGLPGA      TK+GTKRGF +TV LNL    N 
Sbjct: 1   MSPQLPKPSPESSSAGLYFNDTELTLGLPGA------TKSGTKRGFSDTVXLNLRGPCNT 54

Query: 53  N--KHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDL 110
           +   +  END    +  P  K Q+VGWPPV+A RK+  K S K+VKVAV+GAPYLRKVDL
Sbjct: 55  DHASNPSENDVSGDSKPPPAKTQIVGWPPVKASRKNVAKIS-KYVKVAVDGAPYLRKVDL 113

Query: 111 EIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 170
           E+Y SYQ+LL +LEDMFS   IRN++NERK++D V G +Y+PTYED+DGDWMLVGDVPWK
Sbjct: 114 EMYGSYQQLLGSLEDMFSCFPIRNYLNERKLMDPVKGSDYMPTYEDRDGDWMLVGDVPWK 173

Query: 171 MFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           MFVESCKR+RLMKS EAIGLAPR   K +S S
Sbjct: 174 MFVESCKRLRLMKSIEAIGLAPRESQKCTSTS 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482959|ref|XP_002280524.2| PREDICTED: auxin-responsive protein IAA17-like [Vitis vinifera]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/212 (60%), Positives = 153/212 (72%), Gaps = 17/212 (8%)

Query: 1   MSPEKVNHLPES--------DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSND 52
           MSP+     PES        DT+LTLGLPGA      TK+GTKRGF +TV LNL    N 
Sbjct: 1   MSPQLPKPSPESSSAGLYFNDTELTLGLPGA------TKSGTKRGFSDTVGLNLRGPCNT 54

Query: 53  N--KHCEENDAMASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDL 110
           +   +  END    +  P  K Q+VGWPPV+A RK+  K S K+VKVAV+GAPYLRKVDL
Sbjct: 55  DHASNPSENDVSGDSKPPPAKTQIVGWPPVKASRKNVAKIS-KYVKVAVDGAPYLRKVDL 113

Query: 111 EIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 170
           E+Y SYQ+LL +LEDMFS   IRN++NERK++D V G +Y+PTYED+DGDWMLVGDVPWK
Sbjct: 114 EMYGSYQQLLGSLEDMFSCFPIRNYLNERKLMDPVKGSDYMPTYEDRDGDWMLVGDVPWK 173

Query: 171 MFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
           MFVESCKR+RLMKS EAIGLAPR   K +S S
Sbjct: 174 MFVESCKRLRLMKSIEAIGLAPRESQKCTSTS 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50404477|gb|AAT76903.1| IAA type protein [Elaeis guineensis]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 120/194 (61%), Positives = 146/194 (75%), Gaps = 5/194 (2%)

Query: 5   KVNHLPESDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDA--- 61
           +V+ L   +T+L LGLPG G     ++   KRGF ETVDL+L + S      + +     
Sbjct: 13  EVSGLDYEETELKLGLPG-GSRTAGSETEKKRGFAETVDLSLGAESRSGDLGDRSTGDFG 71

Query: 62  MASTTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLS 121
             +   PA KAQVVGWPPVR++RK+A+K SC +VKVAV+GAPYLRKVDLE+Y  YQ+ L+
Sbjct: 72  SGAGKPPAVKAQVVGWPPVRSFRKNALK-SCTYVKVAVDGAPYLRKVDLEMYGGYQQFLT 130

Query: 122 ALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRL 181
           A+EDMFS  T+RN  NER+++D VNG EYVPTYEDKDGDWMLVGDVPWKMFV SCKR+RL
Sbjct: 131 AIEDMFSCFTVRNCPNERRLVDPVNGTEYVPTYEDKDGDWMLVGDVPWKMFVASCKRLRL 190

Query: 182 MKSSEAIGLAPRTP 195
           MKSSEAI LAPRTP
Sbjct: 191 MKSSEAINLAPRTP 204

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818539|gb|AEX00358.1| IAA15 [Solanum lycopersicum]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 154/195 (78%), Gaps = 10/195 (5%)

Query: 12  SDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKH---CEENDAMASTTT- 67
           ++T+LTLGLPG   E  +  +G KRG  + ++L+L SS++  +    CE N +    +T 
Sbjct: 62  NETELTLGLPG---ESRKQISGAKRGNSDGMELSLGSSTSGERRRDICEVNHSKNEISTG 118

Query: 68  --PATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED 125
             P  KAQV+GWPPVR+YRK+ ++  CK+VKVAV+GAPYLRKVDLE+Y SYQ+LL+ALE+
Sbjct: 119 NKPPAKAQVIGWPPVRSYRKNVIE-KCKYVKVAVDGAPYLRKVDLEMYDSYQKLLNALEN 177

Query: 126 MFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSS 185
           MF+ LTI N  +E K++D  NGVEYVPTYEDKDGDWMLVGDVPWKMFV++CKR+RLMKS+
Sbjct: 178 MFTCLTICNSQSESKLMDLTNGVEYVPTYEDKDGDWMLVGDVPWKMFVDTCKRIRLMKST 237

Query: 186 EAIGLAPRTPAKNSS 200
           EAIGLAPRTP ++SS
Sbjct: 238 EAIGLAPRTPGRSSS 252

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22531416|emb|CAD30274.1| IAA16 protein [Gossypium hirsutum]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 156/215 (72%), Gaps = 24/215 (11%)

Query: 1   MSPEKVNHLPESD--------TKLTLGLPGA------GGECHRTKAGTKRGFLETVDLNL 46
           MS E    L E+D        T+LTLGLPG       GG     K G+KRGF ETVDL L
Sbjct: 1   MSSENGKRLLETDAGGLNFEATELTLGLPGEPRVTSDGG----AKLGSKRGFSETVDLKL 56

Query: 47  MSSSNDNKHCEENDAMA-STTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYL 105
               ++N+  +   ++  +  +P +K QVVGWPPVR + K   K SCK+VKVAV+GAPYL
Sbjct: 57  ---GDNNQEVKLGHSLQEAAKSPVSKTQVVGWPPVRGFAKRGKK-SCKYVKVAVDGAPYL 112

Query: 106 RKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG 165
           RKVDLEIY+SYQ+LL++LEDMFS  TIRN++NE+KI D VNG+EY+PTYEDKDGDWMLVG
Sbjct: 113 RKVDLEIYNSYQQLLTSLEDMFSCFTIRNYLNEKKI-DQVNGIEYMPTYEDKDGDWMLVG 171

Query: 166 DVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSS 200
           DVPW+MFVESCKR+RLMKSSEA+GL  +T  K SS
Sbjct: 172 DVPWQMFVESCKRLRLMKSSEAVGLGLKTAPKYSS 206

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.539	0.461	0.615	6.8e-51
UNIPROTKB|Q5VRD1	199	IAA1 "Auxin-responsive protein	0.856	0.869	0.584	6e-48
UNIPROTKB|Q6AT10	212	IAA15 "Auxin-responsive protei	0.896	0.853	0.539	3.3e-47
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.509	0.423	0.621	5.3e-47
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.653	0.566	0.579	1.6e-45
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.599	0.396	0.572	2.5e-45
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.584	0.443	0.507	3e-43
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	0.836	0.894	0.489	7e-38
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.742	0.583	0.482	9.3e-38
TAIR|locus:2129910	168	IAA1 "indole-3-acetic acid ind	0.806	0.970	0.472	1.5e-37

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 72/117 (61%), Positives = 93/117 (79%)

Query:    94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNV 145
             +VKV+++GAPYLRK+DL++Y +YQ+L +AL  MFS  TI N+        +NE K+ID +
Sbjct:   120 YVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLL 179

Query:   146 NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
             NG +YVPTYEDKDGDWMLVGDVPW+MFV+SCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:   180 NGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q5VRD1 IAA1 "Auxin-responsive protein IAA1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 107/183 (58%), Positives = 128/183 (69%)

Query:    13 DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKA 72
             DT LTL LPG+           KR    + D    + + DN       A A+   PA KA
Sbjct:    22 DTALTLRLPGSLAAAAAPDPDRKRSSPSSSDA---ADAADNS---SPLAAAADAPPAPKA 75

Query:    73 QVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLT 131
             +VVGWPPVR++RK+A+  + KFVKVAV+GAPYLRKVDLE Y  Y +LL AL+D  FS  T
Sbjct:    76 RVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFT 133

Query:   132 IRNHVN-ERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL 190
             IR   + ERK++D VNG EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSSEA+ L
Sbjct:   134 IRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNL 193

Query:   191 APR 193
             APR
Sbjct:   194 APR 196

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT10 IAA15 "Auxin-responsive protein IAA15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 103/191 (53%), Positives = 131/191 (68%)

Query:    13 DTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKA 72
             DT LTL LPG+      + + +        D    S+++D+       + A+ + P+ KA
Sbjct:    22 DTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPD-NRLGSTATESPPSPKA 80

Query:    73 QVVGWPPVRAYRKSAM-------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED 125
             +VVGWPPVRA+RK+A+           KFVKVAV+GAPYLRKVDLE Y  Y +LL+AL+D
Sbjct:    81 RVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQD 140

Query:   126 -MFSFLTIRNHVNER-KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 183
               FS  TIR   NE  K++D V+G EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMK
Sbjct:   141 KFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMK 200

Query:   184 SSEAIGLAPRT 194
             SSEA+ LAPR+
Sbjct:   201 SSEAVNLAPRS 211

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 69/111 (62%), Positives = 87/111 (78%)

Query:    95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVN 146
             VKV+++GAPYLRKVDL++Y SYQ+L  AL  MFS  T+ N+        +NE K+++ +N
Sbjct:   127 VKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLN 186

Query:   147 GVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 197
               EYVP+YEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEA+GLAPR   K
Sbjct:   187 SSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 410 (149.4 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 80/138 (57%), Positives = 104/138 (75%)

Query:    69 ATKAQVVGWPPVRAYRKSAMKGSCK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALED 125
             A KAQVVGWPPVR++RK+ +   CK    VKV+++GAPYLRK+D+ +Y SY EL  A ++
Sbjct:    96 APKAQVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQN 155

Query:   126 MFSFLTIRNHVNERKIIDNV---NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLM 182
             MF+  TI    + +++ ++    + +EYVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+M
Sbjct:   156 MFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 215

Query:   183 KSSEAIGLAPRTPAKNSS 200
             K SEAIGLAPR   K  S
Sbjct:   216 KGSEAIGLAPRAVEKCKS 233

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
 Identities = 75/131 (57%), Positives = 93/131 (70%)

Query:    82 AYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI--------- 132
             A  KS  +  C +VKV++EGAPYLRK+DL+ Y SY EL SALE MFS  TI         
Sbjct:   175 AEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGC 234

Query:   133 -RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLA 191
              R+ +NE ++ D + G EYV TYEDKD DWMLVGDVPW+MF+ SCK++R+MKSSEAIGLA
Sbjct:   235 GRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLA 294

Query:   192 PRTPAKNSSKS 202
             PR   K  S++
Sbjct:   295 PRVMEKCRSRN 305

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 336 (123.3 bits), Expect = 3.0e-43, Sum P(3) = 3.0e-43
 Identities = 65/128 (50%), Positives = 92/128 (71%)

Query:    85 KSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RN 134
             K A    C +VKV+++GAPYLRKVDL++Y +Y+EL  ALE MFS  T+          R+
Sbjct:   139 KQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRD 198

Query:   135 HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRT 194
              +++ +++D  NG E V TYEDKD DWMLVGDVPW+MF +SC+R+R+MK S+A+GLAPR 
Sbjct:   199 GLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRA 258

Query:   195 PAKNSSKS 202
               K+ +++
Sbjct:   259 TDKSKNRN 266

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 92/188 (48%), Positives = 121/188 (64%)

Query:    14 TKLTLGLPGAGGE-----CHRT---KAGTKRGFLETVDLNLMSSSNDNKHCEENDAMAST 65
             T+L LGLPG   E      H +   K   KR   +T + ++  S   N   +E+   +S+
Sbjct:     6 TELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQTSEESVSISKVTN---DEHIVESSS 62

Query:    66 TTPATKAQVVGWPPVRAYRKSAMKGSCK---FVKVAVEGAPYLRKVDLEIYHSYQELLSA 122
               P  KA++VGWPP+R+YRK+++  +     FVKV+++GAPYLRK+DL +Y  Y ELL A
Sbjct:    63 AAPPAKAKIVGWPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKA 122

Query:   123 LEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLM 182
             LE MF  LTI  + +ER   +   G EY PTYEDKDGDWMLVGDVPW MFV SCKR+R+M
Sbjct:   123 LETMFK-LTIGEY-SER---EGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIM 177

Query:   183 KSSEAIGL 190
             K +EA GL
Sbjct:   178 KGTEAKGL 185

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 384 (140.2 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 84/174 (48%), Positives = 118/174 (67%)

Query:    48 SSSNDNKHCEEND--AMASTTTPATKAQVVGWPPVRAYRKSAM-----KGSCK------- 93
             ++  +++  EE D    A+   PA KAQVVGWPP+R+YRK+ M     K S +       
Sbjct:    89 AAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQG 148

Query:    94 ----FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDNVNGV 148
                 +VKV+++GAPYLRKVDL+ Y +Y++L +ALE MF  F T ++ ++E +     +G 
Sbjct:   149 QGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDGLSESR----KDG- 203

Query:   149 EYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 202
             EYV TYEDKDGDWMLVGDVPW+MF  SC+R+R+MK S+AIGLAPR   K+ +++
Sbjct:   204 EYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2129910 IAA1 "indole-3-acetic acid inducible" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 87/184 (47%), Positives = 119/184 (64%)

Query:     4 EKVNHLPESDTKLTLGLPGAGGECHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMA 63
             E  N L   DT+L LGLPGA  E             + ++L+ + S+N  K+   ND+  
Sbjct:     2 EVTNGLNLKDTELRLGLPGAQEE-------------QQLELSCVRSNNKRKN---NDSTE 45

Query:    64 STTTPATKAQVVGWPPVRAYRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSAL 123
              +  P  K Q+VGWPPVR+ RK+    +  +VKV+++GAPYLRK+DL++Y +Y ELL AL
Sbjct:    46 ESAPPPAKTQIVGWPPVRSNRKNNNNKNVSYVKVSMDGAPYLRKIDLKMYKNYPELLKAL 105

Query:   124 EDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 183
             E+MF F T+  + +ER   +   G  +VPTYEDKDGDWMLVGDVPW MF  SC+++R+MK
Sbjct:   106 ENMFKF-TVGEY-SER---EGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMK 160

Query:   184 SSEA 187
              SEA
Sbjct:   161 GSEA 164

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AT10	IAA15_ORYSJ	No assigned EC number	0.5360	0.8811	0.8396	yes	no
O24542	AX22D_VIGRR	No assigned EC number	0.5080	0.8217	0.8601	N/A	no
Q38832	IAA14_ARATH	No assigned EC number	0.5022	0.9356	0.8289	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-84

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  247 bits (633), Expect = 2e-84
 Identities = 104/188 (55%), Positives = 129/188 (68%), Gaps = 10/188 (5%)

Query: 13  DTKLTLGLPGAGGECHRTKAGT----KRGFLETVDLNLMSSSNDNKHCEENDAMASTTTP 68
            T+L LGLPG           +    KRGF E  +  + SS  ++K      +   +  P
Sbjct: 5   ATELRLGLPGGSEPESEPSTSSVTSNKRGFSEVTEDGISSSLGEDKSTISVSSNGDSAKP 64

Query: 69  ATKAQVVGWPPVRAYRKSAM--KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDM 126
             KAQVVGWPPVR+YRK+++  K S  +VKV+++GAPYLRKVDL++Y SY EL SALE M
Sbjct: 65  PAKAQVVGWPPVRSYRKNSLREKKSGSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKM 124

Query: 127 FSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 186
           FS  TI     E  ++D +NG EYVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+MK SE
Sbjct: 125 FSCFTIG----ESGLLDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSE 180

Query: 187 AIGLAPRT 194
           AIGLAPR+
Sbjct: 181 AIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.59
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.33
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.27
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.26
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.03
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.7
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.41
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.22
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.85
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.77
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.38
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.13
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.14

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=3.8e-67  Score=445.69  Aligned_cols=186  Identities=52%  Similarity=0.873  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCC-------cccccCCCCCcchhhccccCCCC-----CCC--Cccc------cccccCCCCCC
Q 044582            9 LPESDTKLTLGLPGAGGEC-------HRTKAGTKRGFLETVDLNLMSSS-----NDN--KHCE------ENDAMASTTTP   68 (202)
Q Consensus         9 l~~~~TELrLGLPG~~~~~-------~~~~~~~KR~f~e~~~~~~~~~~-----~~~--~~~~------~~~~~~~~~~p   68 (202)
                      |||++|||||||||+.+++       .....++||+|+++++.......     ...  ....      .........+|
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   80 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP   80 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence            7999999999999997653       22567899999999887641000     000  0000      00011222346


Q ss_pred             CCcCccccCCCCchhhhhhhcC-----CcceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccc----cchh
Q 044582           69 ATKAQVVGWPPVRAYRKSAMKG-----SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH----VNER  139 (202)
Q Consensus        69 ~~k~qvVGWPPVrs~Rkn~~~~-----~~~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~----~~e~  139 (202)
                      ++++|+||||||++||+|.+..     .++||||+|||+||||||||++|+||++|+.+|++||.+|+|+.+    +++.
T Consensus        81 ~~~~~~vgwpp~~s~r~n~~~~~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~  160 (215)
T PF02309_consen   81 ASKAQVVGWPPVRSFRKNSLSEKQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNES  160 (215)
T ss_dssp             -----BTTBS----S-----------------------------------------------------------------
T ss_pred             cccccccCCCcccccccccccccccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccch
Confidence            6889999999999999998763     579999999999999999999999999999999999988888733    2455


Q ss_pred             hhhcccCCCceeeEEecCCCCeEEccCcChhHHHhcceeeEEeccccccCCCCCC
Q 044582          140 KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRT  194 (202)
Q Consensus       140 ~l~d~~~~~~~~ltYeD~dGDwmLVGDvPW~~Fv~svkRLrIm~~sea~~l~~~~  194 (202)
                      ++.++.++++|+|||||+||||||||||||+|||++|||||||+.+|+++|+||+
T Consensus       161 ~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  161 GLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             -------------------------------------------------------
T ss_pred             hhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            5667778899999999999999999999999999999999999999999999985

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.59  E-value=0.00018  Score=51.65  Aligned_cols=67  Identities=25%  Similarity=0.381  Sum_probs=54.3

Q ss_pred             eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHH
Q 044582           94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMF  172 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~F  172 (202)
                      -|||...|.. =|.+.+..--+|.+|...++..|+.   .             ...+.+.|.|.||||..+-+ .=|++.
T Consensus         3 ~vK~~~~~~~-~~~~~~~~~~s~~~L~~~i~~~~~~---~-------------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a   65 (84)
T PF00564_consen    3 RVKVRYGGDI-RRIISLPSDVSFDDLRSKIREKFGL---L-------------DEDFQLKYKDEDGDLVTISSDEDLQEA   65 (84)
T ss_dssp             EEEEEETTEE-EEEEEECSTSHHHHHHHHHHHHHTT---S-------------TSSEEEEEEETTSSEEEESSHHHHHHH
T ss_pred             EEEEEECCee-EEEEEcCCCCCHHHHHHHHHHHhCC---C-------------CccEEEEeeCCCCCEEEeCCHHHHHHH
Confidence            4899999983 3358888888999999999999993   1             34689999999999998875 558887


Q ss_pred             Hhcce
Q 044582          173 VESCK  177 (202)
Q Consensus       173 v~svk  177 (202)
                      ++.++
T Consensus        66 ~~~~~   70 (84)
T PF00564_consen   66 IEQAK   70 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77775

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.33  E-value=0.00065  Score=51.75  Aligned_cols=68  Identities=22%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             eeEEEEcCcccceeecCC---CcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCcChh
Q 044582           94 FVKVAVEGAPYLRKVDLE---IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK  170 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~---~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDvPW~  170 (202)
                      -|||.-+|.-+=-++++.   .--+|++|...+++.|.   +.            ...+|++.|.|.||||..+-..  +
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~------------~~~~~~l~Y~Dedgd~V~l~~D--~   64 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LS------------PDADLSLTYTDEDGDVVTLVDD--N   64 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CC------------CCCcEEEEEECCCCCEEEEccH--H
Confidence            489999998544455553   45799999999999998   32            2367999999999999998776  6


Q ss_pred             HHHhccee
Q 044582          171 MFVESCKR  178 (202)
Q Consensus       171 ~Fv~svkR  178 (202)
                      .|..++.+
T Consensus        65 DL~~a~~~   72 (91)
T cd06398          65 DLTDAIQY   72 (91)
T ss_pred             HHHHHHHH
Confidence            66666554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.27  E-value=0.0011  Score=49.46  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=44.6

Q ss_pred             eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC
Q 044582           94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD  166 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD  166 (202)
                      -|||...|.  .+.+-|..--+|++|.+.+.++|.   +.            +...|.|-|.|.||||.++--
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~---~~------------~~~~f~LkY~Ddegd~v~lts   57 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFK---LD------------DMSAFDLKYLDDDEEWVLLTC   57 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhC---CC------------CCCeeEEEEECCCCCeEEeec
Confidence            389999888  455556666699999999999999   22            235799999999999998754

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=97.26  E-value=0.0016  Score=46.67  Aligned_cols=65  Identities=22%  Similarity=0.392  Sum_probs=51.3

Q ss_pred             eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHHH
Q 044582           95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMFV  173 (202)
Q Consensus        95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~Fv  173 (202)
                      |||.-.|.  -|.+-+..--+|.+|...+.+.|+.                ....+.|.|+|.||||..+.+ .=|++.+
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~----------------~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~   65 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL----------------DNQSFTLKYQDEDGDLVSLTSDEDLEEAI   65 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC----------------CCCCeEEEEECCCCCEEEecCHHHHHHHH
Confidence            68877554  6777788889999999999999992                124578999999999987765 5677777


Q ss_pred             hcce
Q 044582          174 ESCK  177 (202)
Q Consensus       174 ~svk  177 (202)
                      +.++
T Consensus        66 ~~~~   69 (81)
T smart00666       66 EEYD   69 (81)
T ss_pred             HHHH
Confidence            7655

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.03  E-value=0.0035  Score=44.63  Aligned_cols=66  Identities=24%  Similarity=0.416  Sum_probs=51.2

Q ss_pred             eeEEEEcCcccceeecCC-CcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhH
Q 044582           94 FVKVAVEGAPYLRKVDLE-IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKM  171 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~-~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~  171 (202)
                      -|||.-.|.  -|.+=+. .--+|.+|...|.+.|+.   .             ...+.+.|.|.||||..+.+ .=|++
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~---~-------------~~~~~l~y~D~e~d~v~l~sd~Dl~~   63 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGL---D-------------AVSFKLKYPDEDGDLVTISSDEDLEE   63 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCC---C-------------CCcEEEEeeCCCCCEEEeCCHHHHHH
Confidence            378888876  3455555 888999999999999992   1             13578999999999999888 56777


Q ss_pred             HHhcce
Q 044582          172 FVESCK  177 (202)
Q Consensus       172 Fv~svk  177 (202)
                      .++.++
T Consensus        64 a~~~~~   69 (81)
T cd05992          64 AIEEAR   69 (81)
T ss_pred             HHHHHh
Confidence            776655

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.70  E-value=0.0064  Score=45.77  Aligned_cols=53  Identities=15%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEcc
Q 044582           95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG  165 (202)
Q Consensus        95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVG  165 (202)
                      |||.-.|.-+--+++-+..-+|.+|.+.+.++|+.   .               .+.|.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l---~---------------~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL---N---------------DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC---C---------------cceeEEEcCCCCEEEEE
Confidence            79999999777788887788999999999999992   1               46799999999998874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.41  E-value=0.022  Score=43.01  Aligned_cols=58  Identities=22%  Similarity=0.382  Sum_probs=43.6

Q ss_pred             eEEEEcCcccceeecCCCc-CCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582           95 VKVAVEGAPYLRKVDLEIY-HSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV  167 (202)
Q Consensus        95 VKV~mdG~pigRkVDL~~~-~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv  167 (202)
                      +|+.-.|.  -|.+=+..- -+|.+|...+.+.|.. .            ......+.+.|.|.|||+.-+.+-
T Consensus         3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~-~------------~~~~~~flIKYkD~dGDlVTIts~   61 (81)
T cd06401           3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRG-K------------LGSSDDVLIKYKDEDGDLITIFDS   61 (81)
T ss_pred             EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcc-c------------cCCcccEEEEEECCCCCEEEeccH
Confidence            67777666  466554443 3999999999999992 1            112357899999999999999885

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.22  E-value=0.0093  Score=45.30  Aligned_cols=53  Identities=21%  Similarity=0.270  Sum_probs=39.5

Q ss_pred             cccceeecCC--CcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582          102 APYLRKVDLE--IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV  167 (202)
Q Consensus       102 ~pigRkVDL~--~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv  167 (202)
                      +|-||.+=++  ...|+.+|.+++.+=|+   +...          ....|.|.|.|.||||.+.--.
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~---~d~~----------~~~~~~L~YlDDEgD~VllT~D   61 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLG---DDDF----------ETHLYALSYVDDEGDIVLITSD   61 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhC---Cccc----------cCCcccEEEEcCCCCEEEEecc
Confidence            4567765554  37899999999999998   3311          1356899999999999987543

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.85  E-value=0.028  Score=42.61  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582           95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV  167 (202)
Q Consensus        95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv  167 (202)
                      ||+.-.|...--.+|.  .-+|++|.+.+.+||.. .              .+..|++.|.|.|||---+...
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-~--------------~~q~ft~kw~DEEGDp~tiSS~   58 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-H--------------NDQPFTLKWIDEEGDPCTISSQ   58 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-C--------------CCCcEEEEEECCCCCceeecCH
Confidence            7999999976666776  67899999999999992 1              2456999999999998877654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.77  E-value=0.029  Score=42.33  Aligned_cols=67  Identities=19%  Similarity=0.305  Sum_probs=48.7

Q ss_pred             eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEcc-CcChhHHH
Q 044582           95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG-DVPWKMFV  173 (202)
Q Consensus        95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVG-DvPW~~Fv  173 (202)
                      ||..-|..--=-.+|.....+|++++.-|+.||.   |.             +..|+|-|.|.+||.+-+- |+-+..=+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~---l~-------------~~~f~i~Y~D~~gDLLPInNDdNf~kAl   66 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH---IP-------------NVDFLIGYTDPHGDLLPINNDDNFLKAL   66 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC---CC-------------CCcEEEEEeCCCCCEecccCcHHHHHHH
Confidence            5666666632224555566999999999999999   33             2468999999999999775 44555555


Q ss_pred             hcce
Q 044582          174 ESCK  177 (202)
Q Consensus       174 ~svk  177 (202)
                      ++++
T Consensus        67 ssa~   70 (80)
T cd06403          67 SSAN   70 (80)
T ss_pred             HcCC
Confidence            6666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.38  E-value=0.073  Score=40.52  Aligned_cols=59  Identities=22%  Similarity=0.421  Sum_probs=44.6

Q ss_pred             eeEEEEcC---cccceee--cCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582           94 FVKVAVEG---APYLRKV--DLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV  167 (202)
Q Consensus        94 ~VKV~mdG---~pigRkV--DL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv  167 (202)
                      .||.+..|   .+=-|++  |=....+|++|...+.++|..  +             .+..|.+.|.|.|||..-+...
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--l-------------~~~~ftlky~DeeGDlvtIssd   65 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--L-------------RGKNFQLFWKDEEGDLVAFSSD   65 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--c-------------CCCcEEEEEECCCCCEEeecCH
Confidence            67888877   2333444  446677999999999999982  1             2357999999999999887764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.13  E-value=0.08  Score=40.11  Aligned_cols=64  Identities=20%  Similarity=0.325  Sum_probs=49.4

Q ss_pred             eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHHH
Q 044582           95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMFV  173 (202)
Q Consensus        95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~Fv  173 (202)
                      -||+-+|.  .|++-...-=+|..|.+.|+.+|..   ..             ..+.|||.|.|||..-+-| .=.++|.
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~l---p~-------------~~~~vtYiDeD~D~ITlssd~eL~d~~   64 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNL---PE-------------IKVGVTYIDNDNDEITLSSNKELQDFY   64 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCC---Ch-------------hHeEEEEEcCCCCEEEecchHHHHHHH
Confidence            48888887  8999888899999999999999992   21             1278999999999886655 4455555


Q ss_pred             hcc
Q 044582          174 ESC  176 (202)
Q Consensus       174 ~sv  176 (202)
                      .-.
T Consensus        65 ~~~   67 (82)
T cd06397          65 RLS   67 (82)
T ss_pred             Hhc
Confidence            433

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.14  E-value=0.55  Score=35.75  Aligned_cols=65  Identities=18%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             ceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc-ChhH
Q 044582           93 KFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV-PWKM  171 (202)
Q Consensus        93 ~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv-PW~~  171 (202)
                      .-|||+-.|.  .|-|-+..-=+|++|...+.++|+   +.              ..+.+-|.|. ||..-+++- =.++
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~---~~--------------~~~~iKykDE-GD~iti~sq~DLd~   62 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFG---FK--------------RRLKIKMKDD-GDMITMGDQDDLDM   62 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhC---CC--------------CceEEEEEcC-CCCccccCHHHHHH
Confidence            3589998898  667777777789999999999999   22              2578999999 999988874 3344


Q ss_pred             HHhcce
Q 044582          172 FVESCK  177 (202)
Q Consensus       172 Fv~svk  177 (202)
                      -+.++|
T Consensus        63 Ai~~a~   68 (86)
T cd06408          63 AIDTAR   68 (86)
T ss_pred             HHHHHH
Confidence            455554

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.54
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.11
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.51
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.46
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.91
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	84.53
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	83.69
1pqs_A	77	Cell division control protein 24; alpha and beta p	83.43
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	80.93

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.54  E-value=0.0049  Score=45.90  Aligned_cols=57  Identities=26%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             ceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC
Q 044582           93 KFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD  166 (202)
Q Consensus        93 ~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD  166 (202)
                      .=|||+-.|.-+  .+.+..--+|++|...|.++|.. .              .+..+++.|.|.|||+.-+-.
T Consensus         7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-~--------------~~~~f~lky~DEeGD~itisS   63 (89)
T 1vd2_A            7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-D--------------NEQLFTMKWIDEEGDPCTVSS   63 (89)
T ss_dssp             EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-C--------------SSCCEEEEECCSSSCCEECCS
T ss_pred             EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-C--------------CCCeEEEEEECCCCCcccccC
Confidence            568889999844  44444456999999999999992 1              235689999999999976654

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.11  E-value=0.014  Score=43.43  Aligned_cols=70  Identities=16%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             cceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc-Chh
Q 044582           92 CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV-PWK  170 (202)
Q Consensus        92 ~~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv-PW~  170 (202)
                      ..-||..-|..--=-.||-....+|++|..-|+++|..   .             ...|++.|.|.|||++-+-.. -..
T Consensus         6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L---~-------------~~~f~i~Y~D~dGDLlpInnDdnl~   69 (86)
T 1wmh_B            6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI---P-------------GLDVLLGYTDAHGDLLPLTNDDSLH   69 (86)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC---T-------------TCCCEEEEECTTSCEEECCSHHHHH
T ss_pred             EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC---C-------------CCCEEEEEECCCCCEeeecCHHHHH
Confidence            35688888887433355556778999999999999982   1             245899999999999988765 333


Q ss_pred             HHHhcce
Q 044582          171 MFVESCK  177 (202)
Q Consensus       171 ~Fv~svk  177 (202)
                      +=+.++|
T Consensus        70 ~Al~~a~   76 (86)
T 1wmh_B           70 RALASGP   76 (86)
T ss_dssp             HHTTSSS
T ss_pred             HHHHhCC
Confidence            4445666

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.51  E-value=0.024  Score=43.09  Aligned_cols=61  Identities=20%  Similarity=0.257  Sum_probs=45.5

Q ss_pred             cceeEEEEcCc----ccceeecCCC-----------cCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEec
Q 044582           92 CKFVKVAVEGA----PYLRKVDLEI-----------YHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYED  156 (202)
Q Consensus        92 ~~~VKV~mdG~----pigRkVDL~~-----------~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD  156 (202)
                      ..-||++..|.    .--|++-|..           ..+|++|...+.++|...               .+..|.+.|.|
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l---------------~~~~f~l~Y~D   69 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL---------------RPGGFQAHYRA   69 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---------------CSSCEEEEEEC
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc---------------CCCcEEEEEEC
Confidence            46789998762    2446555532           248999999999999831               24569999999


Q ss_pred             CCCCeEEccCc
Q 044582          157 KDGDWMLVGDV  167 (202)
Q Consensus       157 ~dGDwmLVGDv  167 (202)
                      .|||+.-+-+.
T Consensus        70 edGDlItiSsD   80 (102)
T 2kkc_A           70 ERGDLVAFSSD   80 (102)
T ss_dssp             TTCCEEEECSH
T ss_pred             CCCCEEEecCH
Confidence            99999888764

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.46  E-value=0.03  Score=43.65  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             hhhhhhcCCcceeEEEEcCc----ccceeecCC-----------CcCCHHHHHHHHHHhhcccccccccchhhhhcccCC
Q 044582           83 YRKSAMKGSCKFVKVAVEGA----PYLRKVDLE-----------IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNG  147 (202)
Q Consensus        83 ~Rkn~~~~~~~~VKV~mdG~----pigRkVDL~-----------~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~  147 (202)
                      |--|.++.+..-||++..|.    .==|++-|.           .-.+|++|...+.++|...               .+
T Consensus        11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L---------------~~   75 (117)
T 2ktr_A           11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL---------------RP   75 (117)
T ss_dssp             ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---------------CS
T ss_pred             eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc---------------CC
Confidence            44455555678999999752    224555553           1359999999999999821               24


Q ss_pred             CceeeEEecCCCCeEEccCc
Q 044582          148 VEYVPTYEDKDGDWMLVGDV  167 (202)
Q Consensus       148 ~~~~ltYeD~dGDwmLVGDv  167 (202)
                      ..|.+.|.|.|||+.-+-..
T Consensus        76 ~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           76 GGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             SCEEEEEECTTCCEEEECSH
T ss_pred             CcEEEEEECCCCCEEEecCH
Confidence            56999999999999877664

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.91  E-value=0.91  Score=34.26  Aligned_cols=75  Identities=16%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             cceeEEEEcCc------ccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEcc
Q 044582           92 CKFVKVAVEGA------PYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG  165 (202)
Q Consensus        92 ~~~VKV~mdG~------pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVG  165 (202)
                      +.-|||+-+..      .=.+.|=+..--+|++|...+.+-|..++ .    +    +.  .....+-|+|.|||+...+
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~----~----~i--~~~~klkYkDEdGD~Vtl~   73 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-N----N----NI--SPITKIKYQDEDGDFVVLG   73 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-S----S----CC--CCCCCEEEECSSSCEEEEC
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-c----c----cc--cceeEEEEEcCCCCEEEEc
Confidence            35678887732      11366667778899999999999998421 1    1    10  1346799999999998887


Q ss_pred             C-cChhHHHhcce
Q 044582          166 D-VPWKMFVESCK  177 (202)
Q Consensus       166 D-vPW~~Fv~svk  177 (202)
                      + .=|+|-+++++
T Consensus        74 sddDl~~A~e~~~   86 (98)
T 1q1o_A           74 SDEDWNVAKEMLA   86 (98)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6 58999888763

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.53  E-value=1.4  Score=33.79  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             cCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582          109 DLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV  167 (202)
Q Consensus       109 DL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv  167 (202)
                      ||+..-.|.+|+.-..+-|..                  .+-+|-|.|.|||+.-+=|.
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~------------------~DIaLNYrD~eGDLIrildd   68 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQR------------------EDIALNYRDAEGDLVRLLSD   68 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCC------------------SSEEEEEECTTSCEEECCSH
T ss_pred             ccccCCCHHHHHHHHHHHhcc------------------cceeeeeecCCCCEEEEcch
Confidence            677888999999999999983                  13468999999999766554

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=83.69  E-value=4.6  Score=29.39  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEec-CCCCeEEccCcChhHH
Q 044582           94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYED-KDGDWMLVGDVPWKMF  172 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD-~dGDwmLVGDvPW~~F  172 (202)
                      =|||+-.   +.-.|....=-+|.+|...|.+=+..   .             +.+-+|-|.| .+|.|++.+|.=|+.-
T Consensus         7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l---~-------------~~~~~LsYk~~~s~~~vi~~d~dl~~a   67 (83)
T 1oey_A            7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLEL---R-------------LEHTKLSYRPRDSNELVPLSEDSMKDA   67 (83)
T ss_dssp             EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTC---C-------------GGGCCEEECCTTCSSCEECCTTTHHHH
T ss_pred             EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCC---C-------------cceeEEEeeCCCCCCeeccChHHHHHH
Confidence            4566665   67788888888999999999998882   1             1123689999 6889999999999988


Q ss_pred             Hhcce--eeEE
Q 044582          173 VESCK--RVRL  181 (202)
Q Consensus       173 v~svk--RLrI  181 (202)
                      ...++  ||.+
T Consensus        68 w~~~~n~~LtL   78 (83)
T 1oey_A           68 WGQVKNYCLTL   78 (83)
T ss_dssp             HTTCBTTEEEE
T ss_pred             HHhccCCcEEE
Confidence            88755  5554

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=83.43  E-value=1  Score=32.33  Aligned_cols=57  Identities=23%  Similarity=0.420  Sum_probs=41.5

Q ss_pred             CCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHHHhcce
Q 044582          110 LEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMFVESCK  177 (202)
Q Consensus       110 L~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~Fv~svk  177 (202)
                      ...--+|++|...+.+-|..+.     ++    +  ......+-|+|.|||+...++ .=|+|-+.++|
T Consensus         8 V~~~i~f~~L~~kI~~kl~~~~-----~~----~--~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            8 VEKVWNFDDLIMAINSKISNTH-----NN----N--ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             CTTCCCSHHHHHHHHHHTTTTT-----SS----C--SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHcccc-----cc----c--ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            4455689999999999998421     00    0  023568999999999987766 68999888763

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=80.93  E-value=5.3  Score=29.55  Aligned_cols=55  Identities=9%  Similarity=0.093  Sum_probs=41.3

Q ss_pred             eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC
Q 044582           94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD  166 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD  166 (202)
                      -+||.--|...=--|.-..--++++|...+..+|+.                  +.++|.|.|.|||-.-|=-
T Consensus         8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L------------------~~~~ikY~DEenD~v~i~S   62 (87)
T 2bkf_A            8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------NTIQIKYLDEENEEVSINS   62 (87)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------SSEEEEEECTTSCEEEECS
T ss_pred             EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC------------------CceEEEEEcCCCCEEEEec
Confidence            468888888543346444477899999999999982                  1468999999999876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.02
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.87
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	88.16

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00075  Score=48.38  Aligned_cols=63  Identities=8%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHH
Q 044582           94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMF  172 (202)
Q Consensus        94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~F  172 (202)
                      -|||...|..+=-+|-+..-.+|.+|...|+..|+   ++               .+.|.|.|.|+||.++.- .=.++.
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~---l~---------------~~~lkY~Ddd~e~v~l~~d~dl~E~   67 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---LN---------------TIQIKYLDEENEEVSINSQGEYEEA   67 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---CS---------------SEEEEEECTTSCEEEECSHHHHHHH
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC---cc---------------cceEEEEcCCCCEEEEecHHHHHHH
Confidence            58999999876667877888999999999999999   22               257999999999988754 444555


Q ss_pred             Hh
Q 044582          173 VE  174 (202)
Q Consensus       173 v~  174 (202)
                      +.
T Consensus        68 ~~   69 (85)
T d2bkfa1          68 LK   69 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0048  Score=43.21  Aligned_cols=71  Identities=11%  Similarity=0.060  Sum_probs=51.0

Q ss_pred             CcceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cCh
Q 044582           91 SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPW  169 (202)
Q Consensus        91 ~~~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW  169 (202)
                      +..-|||+..+.-  |.+=|..--+|.+|...+.+.|+   ++               .+.|-|.|.||||..+-+ .=+
T Consensus        11 ~~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~---~~---------------~~~lkY~Dedgd~v~i~sD~Dl   70 (85)
T d1ip9a_          11 KTTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRID---TD---------------NFKLQTKLFDGSGEEIKTDSQV   70 (85)
T ss_dssp             CCEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHT---SS---------------CEEEEECCSSSCCSCCCSHHHH
T ss_pred             CCEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhC---CC---------------ceEEEEEcCCCCEEEEeCHHHH
Confidence            3467899988884  44555556789999999999997   21               268999999999986654 455


Q ss_pred             hHHHhcceeeEE
Q 044582          170 KMFVESCKRVRL  181 (202)
Q Consensus       170 ~~Fv~svkRLrI  181 (202)
                      ++-++...||.+
T Consensus        71 ~~ai~~~~kl~v   82 (85)
T d1ip9a_          71 SNIIQAKLKISV   82 (85)
T ss_dssp             HHHHHTTCCEEE
T ss_pred             HHHHHhcCcEEE
Confidence            555554444443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.69  Score=32.28  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             eecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc-ChhHHHhcce
Q 044582          107 KVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV-PWKMFVESCK  177 (202)
Q Consensus       107 kVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv-PW~~Fv~svk  177 (202)
                      .+|....++|++.+.-|+.|-.   |.             +.+++|.|.|.+||.+-+--. -+.-=+.+|+
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~---l~-------------~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQ---IP-------------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTT---CT-------------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eeccccccCHHHHHHHHHHHcC---CC-------------CCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            6777888999999999999987   22             346899999999999987643 4444455666