Citrus Sinensis ID: 044591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
LIPATHSWTKSTSFRSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERSSSAGENVVE
Secondary Structure (PSIPRED)
cccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEEEEccHHHHHHHHcccccccccccccEEEEEEEEcccEEEEEcccccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEccccccccccHHccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccHHHccccEEEEEEcHHHHHHHHcccccccEEEEcEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEEccEEccHHHcccccccccccccccccccEEEEEEEccccEEEcccccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
lipathswtkstsfRSIYTAKVAeqssgligddretrdssdkrTLTQIKTELLQVVQGINrgifgvpsakKSEIEALVELLesqnptphptanldkvggTWKLVYSTITILgskrtklglrdfitlgdfFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSrvdiaydnstitpEQLMNMFRKNYDLLLgifnpdgwleisyvddtmrigrddkgnIFILERsssagenvve
Flexible Loop (DISEMBL)
lipathswtkstsfrsiytakvaeqssgligddretrdssdkrtltqiktellqvvQGINRGIFGVPSAKKSEIEALVELLesqnptphptanldkvggtWKLVYSTITilgskrtklGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFIlersssagenvve
Low Complexity Region (SEG)
LIPATHSWTKSTSFRSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERSSSAGENVVE
Disordered region (IsUnstruct)
*********************************************TQIKTELLQVVQGINRGIFGVPSAK***IEALVEL************NLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFIL************
Disordered Region (DISOPRED)
**************************************************ELLQVVQGINR**********SEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERSSS*******
Disordered Region (DISEMBL)
***********TSFRSIYTAKVAEQSSGLI************RTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERS*********
Disordered Region (DISPRO)
**********STSFRSIYTAKVAEQ*****************RTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LIPATHSWTKSTSFRSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERSSSAGENVVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q5M755	273	Probable plastid-lipid-as	yes	no	0.958	0.846	0.578	2e-75
Q6K439	319	Probable plastid-lipid-as	no	no	0.771	0.583	0.276	4e-15
Q9LU85	242	Probable plastid-lipid-as	no	no	0.639	0.636	0.315	1e-10
P80471	326	Light-induced protein, ch	N/A	no	0.759	0.561	0.256	2e-10
O99019	326	Light-induced protein, ch	N/A	no	0.759	0.561	0.252	6e-10
O49629	310	Probable plastid-lipid-as	no	no	0.759	0.590	0.261	8e-10
Q96398	322	Chromoplast-specific caro	N/A	no	0.755	0.565	0.267	4e-09
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.734	0.547	0.245	6e-09
Q9LW57	284	Probable plastid-lipid-as	no	no	0.705	0.598	0.299	6e-09
Q94FZ9	327	Plastid lipid-associated	N/A	no	0.751	0.553	0.247	2e-08

>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1

 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 185/242 (76%), Gaps = 11/242 (4%)

Query: 1   LIPATHSWTKSTSF-------RSIYTAKVAEQSSGLIGDDRETRDSSDKR----TLTQIK 49
           L+  T S  K+ SF       R ++  KV EQSS    ++++  +  ++     T++ IK
Sbjct: 28  LVSFTSSNGKTLSFSDNSFRLRPMFIGKVTEQSSCSSPNEQQQDEEQEQEQEEITVSHIK 87

Query: 50  TELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTIT 109
            EL + ++GINRGIFGV S KK+EIE LV+LLE +NPTP PT  LDK+GG WKL+YSTIT
Sbjct: 88  EELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTIT 147

Query: 110 ILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASK 169
           +LGSKRTKLGLRDF++LGD  Q ID+A+GK V+V+KF+VRGLNLL+G+  I ASFKI+SK
Sbjct: 148 VLGSKRTKLGLRDFVSLGDLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFRIVASFKISSK 207

Query: 170 SRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFIL 229
           S V+I Y++STI P+QLMN+FRKN DLLLGIFNP+G  EISY+D+ +++GRD KGN+F+L
Sbjct: 208 SSVEITYESSTIKPDQLMNIFRKNMDLLLGIFNPEGLFEISYLDEDLQVGRDGKGNVFVL 267

Query: 230 ER 231
           ER
Sbjct: 268 ER 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 42/228 (18%)

Query: 45  LTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLV 104
           + ++K +L + + G  RG+    S  ++E+  L+  LE++NPTP PT  L  + G W L 
Sbjct: 92  VAELKAKLKEALYGTERGLRAS-SETRAEVVELITQLEARNPTPAPTEALTLLNGKWILA 150

Query: 105 YSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASF 164
           Y++ + L        L   + + +  Q+ID       N IKF+     L    ++  A F
Sbjct: 151 YTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSG---PLATTSVSTNAKF 207

Query: 165 KIASKSRVDIAYDNSTITPEQLMN---------MFRKNYDL--LLGIF------------ 201
           ++ S  RV I +D   I   QL +         +F +N DL  L GIF            
Sbjct: 208 EVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVAR 267

Query: 202 ---------------NPDGWLEISYVDDTMRIGRDDKGNIFILERSSS 234
                          N + WL  +Y+DD +RI R D  +IF+L +  S
Sbjct: 268 TISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGS 315

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 36/190 (18%)

Query: 47  QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
           Q+K ELL+ ++ + RG    P   +  I+ L   +E+ NPT  P  + D V G W+L+Y+
Sbjct: 73  QLKQELLEAIEPLERGATASPD-DQLRIDQLARKVEAVNPTKEPLKS-DLVNGKWELIYT 130

Query: 107 T-ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFK 165
           T  +IL +K+ +  LR        +QSI+V   K  N+  +     N + G +    S K
Sbjct: 131 TSASILQAKKPRF-LRSITN----YQSINVDTLKVQNMETWPF--YNSVTGDIKPLNSKK 183

Query: 166 IASKSRVDIAYDNSTITPEQLMNMFRKNYDLL--LGIFNPD---GWLEISYVDDTMRIGR 220
           +A K +V                     + +L  + I  PD   G LEI+YVD+ +R+ R
Sbjct: 184 VAVKLQV---------------------FKILGFIPIKAPDSARGELEITYVDEELRLSR 222

Query: 221 DDKGNIFILE 230
            DKGN+FIL+
Sbjct: 223 GDKGNLFILK 232

Arabidopsis thaliana (taxid: 3702)

>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 43/226 (19%)

Query: 48  IKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYST 107
           +K +L   + G NRG+    S  ++EI  L+  LES+NP P PT  L  + G W L Y++
Sbjct: 102 LKKQLADSLYGTNRGL-SASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTS 160

Query: 108 ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIA 167
            + L    ++ G    + + +  Q+ID       N + F      L    ++  A F++ 
Sbjct: 161 FSGLFPLLSR-GNLPLVRVEEISQTIDSESFTVQNSVVF---AGPLATTSISTNAKFEVR 216

Query: 168 SKSRVDIAYDNSTITPEQLMN--MFRKNYDLL-----LGIF------------------- 201
           S  RV I ++   I   QL +  +  +N + L     L  F                   
Sbjct: 217 SPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSIS 276

Query: 202 ------------NPDGWLEISYVDDTMRIGRDDKGNIFILERSSSA 235
                       N   WL  +Y+DD +RI R D G++F+L +  S 
Sbjct: 277 SQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSP 322

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum tuberosum (taxid: 4113)

>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 43/226 (19%)

Query: 48  IKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYST 107
           +K +L   + G NRG+    S  ++EI  L+  LES+NP P PT  L  + G W L Y++
Sbjct: 102 LKKQLADSLYGTNRGL-SASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTS 160

Query: 108 ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIA 167
            + L    ++ G    + + +  Q+ID       N + F      L    ++  A F++ 
Sbjct: 161 FSGLFPLLSR-GNLPLVRVEEISQTIDSESFTVQNSVVF---AGPLATTSISTNAKFEVR 216

Query: 168 SKSRVDIAYDNSTITPEQLMN--MFRKNYDLL-----LGIF------------------- 201
           S  RV I ++   I   QL +  +  +N + L     +  F                   
Sbjct: 217 SPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSIS 276

Query: 202 ------------NPDGWLEISYVDDTMRIGRDDKGNIFILERSSSA 235
                       N   WL  +Y+DD +RI R D G++F+L +  S 
Sbjct: 277 SQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSP 322

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum demissum (taxid: 50514)

>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 43/226 (19%)

Query: 47  QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
           ++K  L+  + G +RG+    S  ++EI  L+  LES+NPTP PT  L  + G W L Y+
Sbjct: 85  RLKRSLVDSLYGTDRGL-SASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYT 143

Query: 107 TITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKI 166
           +   L    ++ G+   I + +  Q+ID       N ++F      L    ++  A F+I
Sbjct: 144 SFVNLFPLLSR-GIVPLIKVDEISQTIDSDNFTVQNSVRF---AGPLGTNSISTNAKFEI 199

Query: 167 ASKSRVDIAYDNSTITPEQLMNMFR-KNYDLLLGI---FNP------------------- 203
            S  RV I ++   I   QL +      Y  +LG     NP                   
Sbjct: 200 RSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTI 259

Query: 204 ---------------DGWLEISYVDDTMRIGRDDKGNIFILERSSS 234
                            WL  +Y+D  +RI R D G++F+L +  S
Sbjct: 260 SSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGS 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 46/228 (20%)

Query: 47  QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
           ++K  L+    G +RG+  V    ++EI  L+  LES+NPTP PT  L  + G W L Y+
Sbjct: 98  KLKKALVDSFYGTDRGL-RVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYT 156

Query: 107 TITILGSKRTK-LGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFK 165
           T   L    ++ L L   + + +  Q+ID       N ++F+     L    +T  A F+
Sbjct: 157 TFAGLFPLLSRNLPL---VKVEEISQTIDSENLTVQNSVQFSGP---LATTSITTNAKFE 210

Query: 166 IASKSRVDIAYDNSTITPEQLMN--MFRKNYDLL-----LGIFN---------------- 202
           + S  RV I ++   I   QL +  +   N D L        FN                
Sbjct: 211 VRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDTASNVAKT 270

Query: 203 ----P-----------DGWLEISYVDDTMRIGRDDKGNIFILERSSSA 235
               P           + WL  +Y+D+ +RI R D G++F+L +  S+
Sbjct: 271 ISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSS 318

May be involved in carotenoid sequestration within chromoplasts.

Cucumis sativus (taxid: 3659)

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 43/220 (19%)

Query: 48  IKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYST 107
           +K  L+    G +RG+    S  ++EI  L+  LE++NPTP PT  L  +   W LVY++
Sbjct: 99  LKKALVDSFYGTDRGLNAT-SETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTS 157

Query: 108 ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIA 167
            + L    ++ G      + +  Q+ID       N I+F      L    ++  A F++ 
Sbjct: 158 FSGLFPLLSR-GTLPLARVEEISQTIDSENFTVQNSIQF---AGPLATTSISTNAKFEVR 213

Query: 168 SKSRVDIAYDNSTITPEQLMN--MFRKNYDLL-----LGIF------------------- 201
           S  RV I ++   I   Q+ +  +  +N + L     L  F                   
Sbjct: 214 SPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTIS 273

Query: 202 ------------NPDGWLEISYVDDTMRIGRDDKGNIFIL 229
                       N   WL  +Y+D+ +RI R D G++F+ 
Sbjct: 274 SQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVF 313

Citrus unshiu (taxid: 55188)

>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 17/187 (9%)

Query: 58  GINRGIFG-VPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTI---TILGS 113
           G+NRG+   V   +++E+ A  EL  +  P    T +LDK+ G W+L+YS+      LG 
Sbjct: 97  GLNRGLVASVDDLERAEVAA-KELETAGGPV-DLTDDLDKLQGKWRLLYSSAFSSRSLGG 154

Query: 114 KRTKL--GLRDFITLGDFFQSIDVAKGKAVNVIKFNVRG---LNLLNGQLTIEASFKIAS 168
            R  L  G    +TLG  FQ IDV      N+ +  +        L    T+   F++  
Sbjct: 155 SRPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPFPPLEATATLAHKFELLG 214

Query: 169 KSRVDIAYDNSTI-TPEQLMNMFRKNYDLLLGIFNPD-----GWLEISYVDDTMRIGRDD 222
             ++ I ++ +T+ T   L  +   +   L   F P      G  E++YVDDTMRI R D
Sbjct: 215 TCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGD 274

Query: 223 KGNIFIL 229
           +G + + 
Sbjct: 275 RGELRVF 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 49/230 (21%)

Query: 47  QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
           ++K  L   + G +RG+    S  ++EI  L+  LES+NP P P   L  + G W LVY+
Sbjct: 102 RLKRVLAGSLYGTDRGL-SASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYT 160

Query: 107 TIT---ILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEAS 163
           +      L S+R    +   + + +  Q+ID       N ++F      L    L+  A 
Sbjct: 161 SFVGLFPLLSRR----ISPLVKVDEISQTIDSDSFTVHNSVRF---ASPLATTSLSTNAK 213

Query: 164 FKIASKSRVDIAYDNSTITPEQLMNMFR-KNYDLLLGI---FNP---------------- 203
           F++ S  RV + ++   I   QL +      +  +LG     NP                
Sbjct: 214 FEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASSVA 273

Query: 204 ------------------DGWLEISYVDDTMRIGRDDKGNIFILERSSSA 235
                               WL  +Y+D  +RI R D G++F+L R  S+
Sbjct: 274 RTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSS 323

May modulate the action of carotenoids.

Brassica campestris (taxid: 3711)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255562385	266	structural molecule, putative [Ricinus c	0.950	0.860	0.739	5e-95
225431593	285	PREDICTED: probable plastid-lipid-associ	0.966	0.817	0.683	2e-93
296088613	260	unnamed protein product [Vitis vinifera]	0.966	0.896	0.683	4e-93
388511303	258	unknown [Lotus japonicus]	0.883	0.825	0.695	1e-84
224060443	201	predicted protein [Populus trichocarpa]	0.817	0.980	0.797	3e-84
356528534	268	PREDICTED: probable plastid-lipid-associ	0.871	0.783	0.688	2e-81
356512805	268	PREDICTED: probable plastid-lipid-associ	0.871	0.783	0.678	2e-80
357519785	273	Fibrillin [Medicago truncatula] gi|35552	0.904	0.798	0.644	2e-80
88175342	222	fibrillin 5 [Coffea canephora]	0.875	0.950	0.666	1e-78
297811083	268	structural molecule [Arabidopsis lyrata	0.958	0.861	0.594	4e-74

>gi|255562385|ref|XP_002522199.1| structural molecule, putative [Ricinus communis] gi|223538570|gb|EEF40174.1| structural molecule, putative [Ricinus communis]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 173/234 (73%), Positives = 198/234 (84%), Gaps = 5/234 (2%)

Query: 4   ATHSWTKSTSFRS----IYTAKVAEQSSGLIGDDRETRDSS-DKRTLTQIKTELLQVVQG 58
           ATH WT+   F      I+  KVAEQ+SGL+GD+++  ++  + RT++QIK +L   +QG
Sbjct: 32  ATHPWTRDAKFGEGFVPIHITKVAEQTSGLVGDNKDIEENGKNNRTVSQIKEDLYHALQG 91

Query: 59  INRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKL 118
            NRGIFGV S KKSEI  LVELLESQNPT  PT NLDKV G WKL+YSTITILGSKRTKL
Sbjct: 92  TNRGIFGVKSEKKSEIHGLVELLESQNPTADPTVNLDKVDGCWKLLYSTITILGSKRTKL 151

Query: 119 GLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDN 178
           GLRDFI+LGD FQ+IDV KGKAVNVIKFNVRGLNLLNGQLTIEASF+I+SKSRV+I YD+
Sbjct: 152 GLRDFISLGDLFQNIDVTKGKAVNVIKFNVRGLNLLNGQLTIEASFQISSKSRVEIKYDS 211

Query: 179 STITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERS 232
           STITP+QLMNMFRKNYDLLLGIFNP+GWL+I+YVDD  RIGRDDKGNIFILERS
Sbjct: 212 STITPDQLMNMFRKNYDLLLGIFNPEGWLDITYVDDNTRIGRDDKGNIFILERS 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431593|ref|XP_002276832.1| PREDICTED: probable plastid-lipid-associated protein 7, chloroplastic [Vitis vinifera]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 200/253 (79%), Gaps = 20/253 (7%)

Query: 2   IPATHSWTKSTSF--------RSIYTAKVAEQSSGLIGDDRE------------TRDSSD 41
           + ATHS ++  S         R  Y  +VAEQS GL+GDD++               SSD
Sbjct: 32  VSATHSGSRRRSIFGEFPSGSRPFYAIRVAEQSPGLVGDDQDIVVKEEEEEDEQEGASSD 91

Query: 42  KRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTW 101
            RT+  +K +L Q VQGINRG+FGVPSAKKSEIEALV+LLESQNPTP PT NLDKV G W
Sbjct: 92  DRTIANVKADLYQAVQGINRGVFGVPSAKKSEIEALVKLLESQNPTPEPTLNLDKVNGWW 151

Query: 102 KLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIE 161
           KLVYSTITILGSKRTKLGLR+FITLGDF Q IDV + KAVNVIKFN RG N LNG+L IE
Sbjct: 152 KLVYSTITILGSKRTKLGLRNFITLGDFLQIIDVEEAKAVNVIKFNARGFNFLNGELKIE 211

Query: 162 ASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRD 221
           ASFKIASKSRVDI YD+STITP++LMN+F++NYDLLLGIFNP+GWLEI+Y+DD+MRIGRD
Sbjct: 212 ASFKIASKSRVDIKYDSSTITPDKLMNVFKQNYDLLLGIFNPEGWLEITYLDDSMRIGRD 271

Query: 222 DKGNIFILERSSS 234
           DKGN+FILERS +
Sbjct: 272 DKGNLFILERSEA 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088613|emb|CBI37604.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 200/253 (79%), Gaps = 20/253 (7%)

Query: 2   IPATHSWTKSTSF--------RSIYTAKVAEQSSGLIGDDRE------------TRDSSD 41
           + ATHS ++  S         R  Y  +VAEQS GL+GDD++               SSD
Sbjct: 7   VSATHSGSRRRSIFGEFPSGSRPFYAIRVAEQSPGLVGDDQDIVVKEEEEEDEQEGASSD 66

Query: 42  KRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTW 101
            RT+  +K +L Q VQGINRG+FGVPSAKKSEIEALV+LLESQNPTP PT NLDKV G W
Sbjct: 67  DRTIANVKADLYQAVQGINRGVFGVPSAKKSEIEALVKLLESQNPTPEPTLNLDKVNGWW 126

Query: 102 KLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIE 161
           KLVYSTITILGSKRTKLGLR+FITLGDF Q IDV + KAVNVIKFN RG N LNG+L IE
Sbjct: 127 KLVYSTITILGSKRTKLGLRNFITLGDFLQIIDVEEAKAVNVIKFNARGFNFLNGELKIE 186

Query: 162 ASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRD 221
           ASFKIASKSRVDI YD+STITP++LMN+F++NYDLLLGIFNP+GWLEI+Y+DD+MRIGRD
Sbjct: 187 ASFKIASKSRVDIKYDSSTITPDKLMNVFKQNYDLLLGIFNPEGWLEITYLDDSMRIGRD 246

Query: 222 DKGNIFILERSSS 234
           DKGN+FILERS +
Sbjct: 247 DKGNLFILERSEA 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511303|gb|AFK43713.1| unknown [Lotus japonicus]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 184/223 (82%), Gaps = 10/223 (4%)

Query: 10  KSTSFRSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSA 69
           +++ FR I   KVAEQSSGL+ D+          TL Q K EL   V+GINRGIFG+PSA
Sbjct: 40  RASWFRPITIMKVAEQSSGLVEDE----------TLAQKKRELYMAVEGINRGIFGMPSA 89

Query: 70  KKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDF 129
           +K EIE LV+ LESQNPTP PT  L+KV G W+L+YSTI+ILGSKRTKLGLRDFI+LGDF
Sbjct: 90  QKIEIENLVKQLESQNPTPDPTLELEKVAGCWRLIYSTISILGSKRTKLGLRDFISLGDF 149

Query: 130 FQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNM 189
           FQ+ID  + KAVNVIKF+ RGL+LL+G+L+IEASFKIAS +RVDI Y+ STI P+QLMN+
Sbjct: 150 FQTIDEVQSKAVNVIKFSARGLSLLSGELSIEASFKIASTTRVDINYEKSTIIPDQLMNL 209

Query: 190 FRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERS 232
           FRKNYDLLL IFNP+GWLEI+YVDD+MRIGRDDKGNIF+LERS
Sbjct: 210 FRKNYDLLLSIFNPEGWLEITYVDDSMRIGRDDKGNIFVLERS 252

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060443|ref|XP_002300202.1| predicted protein [Populus trichocarpa] gi|222847460|gb|EEE85007.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 158/198 (79%), Positives = 173/198 (87%), Gaps = 1/198 (0%)

Query: 15  RSIYTAKVAEQSSGLIGDDRETRDS-SDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSE 73
           R I+T KVAEQS GL+ D++E  ++  D R + QIK +L Q VQ INRGIFGVPSAKKS 
Sbjct: 2   RPIHTIKVAEQSPGLVDDNKEINENDKDNREVEQIKADLYQAVQVINRGIFGVPSAKKSA 61

Query: 74  IEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSI 133
           I  LVELLESQNPTP PT NL+KVGG WKLVYSTITILGSKRTKLGLRDFITLGDFFQ+I
Sbjct: 62  ILGLVELLESQNPTPDPTLNLEKVGGRWKLVYSTITILGSKRTKLGLRDFITLGDFFQNI 121

Query: 134 DVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKN 193
           DVAKGKAVNVI FNVRGLNLLNGQLTIEASFKIASKSRVDI Y++STI P+QLMN+FRKN
Sbjct: 122 DVAKGKAVNVINFNVRGLNLLNGQLTIEASFKIASKSRVDINYESSTIIPDQLMNLFRKN 181

Query: 194 YDLLLGIFNPDGWLEISY 211
           YDLLL IFNPDGWLEI+Y
Sbjct: 182 YDLLLSIFNPDGWLEITY 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528534|ref|XP_003532856.1| PREDICTED: probable plastid-lipid-associated protein 7, chloroplastic-like [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/218 (68%), Positives = 179/218 (82%), Gaps = 8/218 (3%)

Query: 14  FRSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSE 73
           FR I   KVAE +SG            +   L Q K EL Q V+GINRGIFG+PS KKSE
Sbjct: 52  FRPITIIKVAEHNSG--------SGLVELEALAQKKRELYQAVEGINRGIFGIPSTKKSE 103

Query: 74  IEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSI 133
           IE+LV+ LES NPTP PT  L+KV G W+LVYSTI+ILGSKRTKLGLRDFI+L DFFQSI
Sbjct: 104 IESLVKQLESLNPTPFPTLELEKVAGCWRLVYSTISILGSKRTKLGLRDFISLDDFFQSI 163

Query: 134 DVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKN 193
           D++K KAVNVIKF+ RGL+LL+GQL+IEASF+I+S +RVDI ++NSTITP++LMN+FRKN
Sbjct: 164 DISKSKAVNVIKFSARGLSLLSGQLSIEASFRISSSTRVDINFENSTITPDRLMNVFRKN 223

Query: 194 YDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILER 231
           YDLLLG+FNP+GWLEI+YVD+TMRIGRDDK NIF+LER
Sbjct: 224 YDLLLGVFNPEGWLEITYVDETMRIGRDDKSNIFVLER 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512805|ref|XP_003525106.1| PREDICTED: probable plastid-lipid-associated protein 7, chloroplastic-like [Glycine max]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/218 (67%), Positives = 177/218 (81%), Gaps = 8/218 (3%)

Query: 14  FRSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSE 73
           FR I   KVAE + G           ++  TL Q K EL Q V+GINRGIFG+P+ KKSE
Sbjct: 52  FRPITIIKVAEHNPG--------SGLAELETLAQKKRELCQAVEGINRGIFGIPATKKSE 103

Query: 74  IEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSI 133
           IE LV+ +ES NPTP PT  L+KV G W+LVYSTI+ILGSKRTKLGLRDFI+L DFFQ+I
Sbjct: 104 IERLVKQIESLNPTPCPTLELEKVAGCWRLVYSTISILGSKRTKLGLRDFISLDDFFQTI 163

Query: 134 DVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKN 193
           D++K KAVNVIKF+  GL+LL+GQL IEASF+IAS +RVDI ++NSTITP++LMN+FRKN
Sbjct: 164 DISKSKAVNVIKFSAMGLSLLSGQLNIEASFRIASSTRVDINFENSTITPDRLMNVFRKN 223

Query: 194 YDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILER 231
           YDLLLGIFNP+GWLEI+YVDDT+RIGRDDK NIF+LER
Sbjct: 224 YDLLLGIFNPEGWLEITYVDDTLRIGRDDKSNIFVLER 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519785|ref|XP_003630181.1| Fibrillin [Medicago truncatula] gi|355524203|gb|AET04657.1| Fibrillin [Medicago truncatula]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 184/245 (75%), Gaps = 27/245 (11%)

Query: 4   ATHSWTKSTSF-------RSIYTAKVAEQSSG--LIGDDRETRDSSDKRTLTQIKTELLQ 54
           +  SW K++ F       R I   KVAEQSSG  L+ D+           L Q K EL Q
Sbjct: 32  SNRSWIKTSRFGEKPLWFRPITIIKVAEQSSGYGLVEDE----------ALGQKKRELYQ 81

Query: 55  VVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSK 114
            ++GINRGIFG+PS KK EIE LV+ LESQNPTP PT  L+KV G W+LVYSTI+ILGS+
Sbjct: 82  ALEGINRGIFGIPSGKKLEIETLVKQLESQNPTPEPTLELEKVDGCWRLVYSTISILGSR 141

Query: 115 RTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKS---- 170
           RTKLGLRDFI LGDFFQ ID  K KAVNVIKFN +GL LL G+L+IEASFKIAS++    
Sbjct: 142 RTKLGLRDFIALGDFFQIIDKTKSKAVNVIKFNAKGLILLCGELSIEASFKIASRTVKSP 201

Query: 171 ----RVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNI 226
               RVDI ++NSTITP+QLMN+FRKNYD+LLGIFNP+GWLEI+YVDD MRIGRDDKGNI
Sbjct: 202 PLCLRVDINFENSTITPDQLMNVFRKNYDILLGIFNPEGWLEITYVDDKMRIGRDDKGNI 261

Query: 227 FILER 231
           F+LER
Sbjct: 262 FVLER 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88175342|gb|ABD39693.1| fibrillin 5 [Coffea canephora]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/219 (66%), Positives = 175/219 (79%), Gaps = 8/219 (3%)

Query: 15  RSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSEI 74
           R+I + K  E+S G+     E +D  +K+T+ Q K  L   +QGINRGIFGV S KK+EI
Sbjct: 11  RTIVSTKATEKSFGV-----EVQD--EKQTIQQTKQSLYDALQGINRGIFGVSSEKKAEI 63

Query: 75  EALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSID 134
             L+ELLESQNP+P PT N++K+GGTWKLVYSTITILGSKRTKLGLRDFI+LGDFFQ ID
Sbjct: 64  TRLIELLESQNPSPEPTMNIEKMGGTWKLVYSTITILGSKRTKLGLRDFISLGDFFQDID 123

Query: 135 VAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNY 194
             +GKAVNVI+F+ +GLNL  GQL +EA+FKIASKSRVDI Y+N TITPEQLMN+F KNY
Sbjct: 124 QMEGKAVNVIEFSAKGLNLFRGQLKVEATFKIASKSRVDIRYENFTITPEQLMNLFEKNY 183

Query: 195 DLLLGIFNPDGWLEISY-VDDTMRIGRDDKGNIFILERS 232
           D    IFNP+GWL I+Y  D+ +RIGRDDKGNIF+LERS
Sbjct: 184 DFFFSIFNPEGWLNITYPFDENLRIGRDDKGNIFVLERS 222

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811083|ref|XP_002873425.1| structural molecule [Arabidopsis lyrata subsp. lyrata] gi|297319262|gb|EFH49684.1| structural molecule [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 188/239 (78%), Gaps = 8/239 (3%)

Query: 1   LIPATHSWTKSTSFR-------SIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELL 53
           L+  T+S +K+ SFR        ++  KV EQSS     + + ++  ++ T+TQIK EL 
Sbjct: 28  LVSFTNSNSKTLSFRDKSFRLRPMFIGKVTEQSSA-SSPNEQEQEQEEEVTVTQIKEELY 86

Query: 54  QVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGS 113
           + ++GINRGIFGV S KK+EIE LV+LLE +NPTP PT  LDK+GG WKL+YSTIT+LGS
Sbjct: 87  EALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVLGS 146

Query: 114 KRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVD 173
           KRTKLGLRDF++LGD  Q ID+A+GK V+V+KF+VRGLNLL+G+  I ASFKI+SKS V+
Sbjct: 147 KRTKLGLRDFVSLGDLLQHIDIAQGKTVHVLKFDVRGLNLLDGEFRIVASFKISSKSSVE 206

Query: 174 IAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILERS 232
           I Y++STI P+QLMN+FRKN DLLLGIFNP+G  EISY+D+ +++GRD KGN+F+LER+
Sbjct: 207 ITYESSTIKPDQLMNIFRKNMDLLLGIFNPEGLFEISYLDEDLQVGRDGKGNVFVLERT 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.917	0.809	0.608	3.3e-70
TAIR|locus:2090890	284	FIB4 "fibrillin 4" [Arabidopsi	0.863	0.732	0.296	3.3e-15
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.809	0.629	0.281	6.9e-14
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.547	0.404	0.297	2.1e-12
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.547	0.404	0.297	3.4e-12
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.485	0.483	0.314	1.9e-11
TAIR|locus:2062497	376	AT2G35490 [Arabidopsis thalian	0.784	0.502	0.251	2.5e-09
TAIR|locus:2026052	409	AT1G51110 [Arabidopsis thalian	0.842	0.496	0.247	2.1e-08
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.506	0.521	0.283	6.2e-07
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.551	0.418	0.287	1.1e-06

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 137/225 (60%), Positives = 176/225 (78%)

Query:    11 STSFRSIYTAKVAEQSSGLIGD----DRETRDSSDKRTLTQIKTELLQVVQGINRGIFGV 66
             S   R ++  KV EQSS    +    D E     ++ T++ IK EL + ++GINRGIFGV
Sbjct:    45 SFRLRPMFIGKVTEQSSCSSPNEQQQDEEQEQEQEEITVSHIKEELYEALKGINRGIFGV 104

Query:    67 PSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITL 126
              S KK+EIE LV+LLE +NPTP PT  LDK+GG WKL+YSTIT+LGSKRTKLGLRDF++L
Sbjct:   105 KSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVLGSKRTKLGLRDFVSL 164

Query:   127 GDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQL 186
             GD  Q ID+A+GK V+V+KF+VRGLNLL+G+  I ASFKI+SKS V+I Y++STI P+QL
Sbjct:   165 GDLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQL 224

Query:   187 MNMFRKNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILER 231
             MN+FRKN DLLLGIFNP+G  EISY+D+ +++GRD KGN+F+LER
Sbjct:   225 MNIFRKNMDLLLGIFNPEGLFEISYLDEDLQVGRDGKGNVFVLER 269

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

TAIR|locus:2090890 FIB4 "fibrillin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 68/229 (29%), Positives = 108/229 (47%)

Query:    20 AKVAEQSSGLIGDDRETRDSS--DKRTLTQIKTELLQVVQGINRGIFG-VPSAKKSEIEA 76
             + + E S G   D   +   S  D + +  +K +LL VV G+NRG+   V   +++E+ A
Sbjct:    57 SSLVEVSIGGESDPPPSSSGSGGDDKQIALLKLKLLSVVSGLNRGLVASVDDLERAEVAA 116

Query:    77 LVELLESQNPTPHPTANLDKVGGTWKLVYSTI---TILGSKRTKL--GLRDFITLGDFFQ 131
               EL  +  P    T +LDK+ G W+L+YS+      LG  R  L  G    +TLG  FQ
Sbjct:   117 K-ELETAGGPVDL-TDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQ 174

Query:   132 SIDVAKGKAVNVIKFNVRG---LNLLNGQLTIEASFKIASKSRVDIAYDNSTI-TPEQLM 187
              IDV      N+ +  +        L    T+   F++    ++ I ++ +T+ T   L 
Sbjct:   175 RIDVFSKDFDNIAEVELGAPWPFPPLEATATLAHKFELLGTCKIKITFEKTTVKTSGNLS 234

Query:   188 NMFRKNYDLLLGIFNPD-----GWLEISYVDDTMRIGRDDKGN--IFIL 229
              +   +   L   F P      G  E++YVDDTMRI R D+G   +F++
Sbjct:   235 QIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDRGELRVFVI 283

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
 Identities = 58/206 (28%), Positives = 90/206 (43%)

Query:    21 KVAEQSSGLIGDDRETRDSS--DKRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALV 78
             KV    +G IG      + +  D     ++K  L+  + G +RG+    S  ++EI  L+
Sbjct:    57 KVRATDTGEIGSALLAAEEAIEDVEETERLKRSLVDSLYGTDRGL-SASSETRAEIGDLI 115

Query:    79 ELLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKG 138
               LES+NPTP PT  L  + G W L Y++   L    ++ G+   I + +  Q+ID    
Sbjct:   116 TQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSR-GIVPLIKVDEISQTIDSDNF 174

Query:   139 KAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFR-KNYDLL 197
                N ++F   G  L    ++  A F+I S  RV I ++   I   QL +      Y  +
Sbjct:   175 TVQNSVRF--AG-PLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEV 231

Query:   198 LGI---FNPDGWLEISYVDDTMRIGR 220
             LG     NP   L  S  D    + R
Sbjct:   232 LGQKIDLNPIRGLLTSVQDTASSVAR 257

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 140 (54.3 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 41/138 (29%), Positives = 67/138 (48%)

Query:    48 IKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYST 107
             +K +L   + G NRG+    S  ++EI  L+  LES+NP P PT  L  + G W L Y++
Sbjct:   102 LKKQLADSLYGTNRGL-SASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTS 160

Query:   108 ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIA 167
              + L    ++ G    + + +  Q+ID       N + F   G  L    ++  A F++ 
Sbjct:   161 FSGLFPLLSR-GNLPLVRVEEISQTIDSESFTVQNSVVF--AG-PLATTSISTNAKFEVR 216

Query:   168 SKSRVDIAYDNSTI-TPE 184
             S  RV I ++   I TP+
Sbjct:   217 SPKRVQIKFEEGIIGTPQ 234

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 140 (54.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 41/138 (29%), Positives = 67/138 (48%)

Query:    48 IKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYST 107
             +K +L   + G NRG+    S  ++EI  L+  LES+NP P PT  L  + G W L Y++
Sbjct:   102 LKKQLADSLYGTNRGL-SASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTS 160

Query:   108 ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIA 167
              + L    ++ G    + + +  Q+ID       N + F   G  L    ++  A F++ 
Sbjct:   161 FSGLFPLLSR-GNLPLVRVEEISQTIDSESFTVQNSVVF--AG-PLATTSISTNAKFEVR 216

Query:   168 SKSRVDIAYDNSTI-TPE 184
             S  RV I ++   I TP+
Sbjct:   217 SPKRVQIKFEEGIIGTPQ 234

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 40/127 (31%), Positives = 65/127 (51%)

Query:    47 QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
             Q+K ELL+ ++ + RG    P   +  I+ L   +E+ NPT  P  + D V G W+L+Y+
Sbjct:    73 QLKQELLEAIEPLERGATASPD-DQLRIDQLARKVEAVNPTKEPLKS-DLVNGKWELIYT 130

Query:   107 T-ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFK 165
             T  +IL +K+ +  LR        +QSI+V   K  N+  +     N + G +    S K
Sbjct:   131 TSASILQAKKPRF-LRSITN----YQSINVDTLKVQNMETWPF--YNSVTGDIKPLNSKK 183

Query:   166 IASKSRV 172
             +A K +V
Sbjct:   184 VAVKLQV 190

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2062497 AT2G35490 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
 Identities = 53/211 (25%), Positives = 96/211 (45%)

Query:    24 EQSSGLIGDDRETRDSSDKRTLT----QIKTELLQVVQGINRGIFGVPSAKKSEIEALVE 79
             ++  G IG + E  D+ +   ++    ++K  L   V G   G F   S  ++E+  LV 
Sbjct:   126 DEWGGEIGGETEA-DAGNGSAVSDPTWELKRCLADSVYGTELG-FKAGSEVRAEVLELVN 183

Query:    80 LLESQNPTPHPTANLDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGK 139
              LE+ NPTP P  N + + G W L+Y+  + L       G    + +    QSID     
Sbjct:   184 QLEALNPTPAPLENPELLDGNWVLLYTAFSEL-IPLLAAGSTPLLKVKSISQSIDTN--- 239

Query:   140 AVNVIKFNVRGLN--LLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDL- 196
               N+I  N   L+    +   +  ASF++ S SR+++++   T+ P     + + + DL 
Sbjct:   240 --NLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPP----VIKSSVDLP 293

Query:   197 -LLGIFNPDGWLEISYVDDTMRIGRDDKGNI 226
               +G+F     + +S +  ++   +D   NI
Sbjct:   294 ESVGVFGQQ--ISLSLLKQSLNPLQDVAANI 322

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2026052 AT1G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 56/226 (24%), Positives = 109/226 (48%)

Query:    15 RSIYTAKVAEQSSGLIGDDRETRDSSDKRTLTQIKTELLQVVQGIN-RGIFGVPSAKKSE 73
             R+  T +++  SS  + D  +T+ SS        + +L+  + GI  RG    P  + ++
Sbjct:    47 RNCRTLRISCSSSSTVTD--QTQQSS----FNDAELKLIDALIGIQGRGKSASPK-QLND 99

Query:    74 IEALVELLESQNPTPHPTANLDKVGGTWKLVYSTITILGS--KRTKLGLRDFITLGDFFQ 131
             +E+ V++LE      +PT + D + G W+L+++T     S  +RT  G+  F    D + 
Sbjct:   100 VESAVKVLEGLEGIQNPTDS-DLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYL 158

Query:   132 SIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFR 191
                    +  N++KF+    + + G+L +EA   I    RV   +D +    + L   F+
Sbjct:   159 KA-TNDPRVSNIVKFS----DFI-GELKVEAVASIKDGKRVLFRFDRAAFDLKFLP--FK 210

Query:   192 KNYDLLLGIFNPD--GWLEISYVDDT--MRIGRDDKGNIFILERSS 233
               Y +   +   +  GWL+ +Y+  +  +RI R +KG  F+L++ +
Sbjct:   211 VPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKET 256

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
 Identities = 38/134 (28%), Positives = 65/134 (48%)

Query:    40 SDKRTLTQIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGG 99
             ++KR   Q+K EL++ ++ + RG    P  +   I+ L   +E+ NPT  P  + D + G
Sbjct:    59 AEKRK--QLKHELVEAIEPLERGATASPDDQLL-IDQLARKVEAVNPTKEPLKS-DLING 114

Query:   100 TWKLVYST-ITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQL 158
              W+L+Y+T   IL +K+ +  LR          ++D  K + +    F     N + G L
Sbjct:   115 KWELIYTTSAAILQAKKPRF-LRSLTNYQCI--NMDTLKVQRMETWPF----YNSVTGDL 167

Query:   159 TIEASFKIASKSRV 172
             T   S  +A K +V
Sbjct:   168 TPLNSKTVAVKLQV 181

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 40/139 (28%), Positives = 66/139 (47%)

Query:    47 QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
             ++K  L   + G +RG+  V S  ++EI  L+  LES+NPTP P   L  + G W L Y+
Sbjct:    93 RLKRSLADSLYGTDRGL-SVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYT 151

Query:   107 TITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKI 166
             +   L    ++  +   + + +  Q+ID       N ++F   G        +  A F+I
Sbjct:   152 SFVGLFPLLSRR-IEPLVKVDEISQTIDSDSFTVQNSVRF--AG-PFSTTSFSTNAKFEI 207

Query:   167 ASKSRVDIAYDNSTI-TPE 184
              S  RV I ++   I TP+
Sbjct:   208 RSPKRVQIKFEQGVIGTPQ 226

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5M755	PAP7_ARATH	No assigned EC number	0.5785	0.9585	0.8461	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	1e-31

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  114 bits (288), Expect = 1e-31
 Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 25/201 (12%)

Query: 47  QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKLVYS 106
           ++K +LL  + G NRG+      + +EIE+ V  LE+ NPTP PT +LD + G W+L+Y+
Sbjct: 2   RLKRKLLDAIYGTNRGLRASSDDR-AEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYT 60

Query: 107 TI--TILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASF 164
           T    +    R +L     + +G  +Q+IDV      N + F      L  G  ++ A F
Sbjct: 61  TSKELLPLLARGRLP---LLKVGQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKF 114

Query: 165 KIASKSRVDIAYDNSTITPEQ-LMNMFRKNYDLLLGI----------FNP-----DGWLE 208
           +I S  RV I ++   +   Q L        D    I          F        GWLE
Sbjct: 115 EIRSPKRVQIRFERGVLGTPQLLKGSLTPLQDTASNIRGISSQLPLPFPLSGDRAKGWLE 174

Query: 209 ISYVDDTMRIGRDDKGNIFIL 229
            +Y+D+ +RI R D G++F+L
Sbjct: 175 TTYLDEDLRISRGDGGSLFVL 195

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=7.8e-41  Score=284.17  Aligned_cols=179  Identities=36%  Similarity=0.684  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCCCC-CCcCcEEEEEEeecccccccccccCcccccc
Q 044591           47 QIKTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPTPHPTANL-DKVGGTWKLVYSTITILGSKRTKLGLRDFIT  125 (241)
Q Consensus        47 ~lK~~LL~~ia~t~rG~~asp~~~r~~I~~li~~LE~~np~~~P~~~~-~lL~G~W~LvyTt~~~l~s~~~~lG~~~~~~  125 (241)
                      ++|++||+++++++||+.+++ +++++|+++|++||++||+++|+ ++ ++|+|+|+|+|||+...... ...+..++..
T Consensus         2 ~~K~~Ll~~~~~~~rG~~~~~-~~~~~i~~~v~~LE~~np~~~p~-~s~~~L~G~W~Lvytt~~~~~~~-l~~~~~~~~~   78 (198)
T PF04755_consen    2 DLKQELLQAVAGTNRGLRASP-EDREEIEELVEELEALNPTPDPA-DSLPLLDGRWELVYTTSPEIRSL-LQRGRLPGVR   78 (198)
T ss_pred             hHHHHHHHHHhccCCCccCCH-HHHHHHHHHHHHHHHhCCCCCCc-CCchhcCcEEEEEeecCCCcccc-cccccccccc
Confidence            699999999999999999886 58999999999999999999998 55 99999999999998754321 0012224567


Q ss_pred             cCeeEEEEECCCCeEEEEEEEeecCccceeeEEEEEEEEEEcCCceEEEEeecceechhhhh--------hhh-------
Q 044591          126 LGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLM--------NMF-------  190 (241)
Q Consensus       126 ~g~v~Q~Id~~~~~~~N~v~f~~~gl~~l~g~v~v~a~~~~~~~~rv~v~F~~~~v~~~~l~--------~l~-------  190 (241)
                      ++++||+||.+++++.|+|+|..  +|.+.|.+.+.+++++.++.|+.++|+++.+.++.+.        +.+       
T Consensus        79 ~~~v~Q~id~~~~~~~N~v~~~~--~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~  156 (198)
T PF04755_consen   79 VGRVFQTIDADNGRVENVVELSG--FPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGI  156 (198)
T ss_pred             ccceEEEEECCCceEEEEEEEec--cCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhccccc
Confidence            99999999999999999999765  5667889999999999999999999999999864421        000       


Q ss_pred             h--hccccccccCCCceEEEEEEecCCeEEEeCCCCcEEEEE
Q 044591          191 R--KNYDLLLGIFNPDGWLEISYVDDTMRIGRDDKGNIFILE  230 (241)
Q Consensus       191 ~--~~~~~~lp~~~p~g~l~~tYLDedlRI~Rg~~G~~FV~~  230 (241)
                      .  .+..++++...++|||+||||||||||+||++|++|||.
T Consensus       157 ~~~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~  198 (198)
T PF04755_consen  157 SDELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK  198 (198)
T ss_pred             ccccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence            0  111222333467999999999999999999999999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 60/244 (24%)

Query: 7   SWTKSTSFRSIYTAKVAEQSSGLIGDDRETRDSSDKR--TLTQIKTELLQ-------VVQ 57
                    S+ T    EQ   L  D++     +  R     +++  LL+       ++ 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 58  G----------------------INRGIFGVPSAKKSEIEALVELLES--QNPTPHPTAN 93
           G                      ++  IF +     +  E ++E+L+       P+ T+ 
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 94  LDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSI----DVAKGKAVNVIKFNVR 149
            D         +S+   L     +  LR  +    +   +    +V   KA N    + +
Sbjct: 217 SD---------HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 150 GLNLLNGQLTIEASFKIASKSRVDIAYDNSTITPEQLMNMFRKNYDLLLGIFNPDGWLEI 209
            L L      +      A+ + + + + + T+TP+++ ++  K             +L+ 
Sbjct: 268 IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-------------YLDC 313

Query: 210 SYVD 213
              D
Sbjct: 314 RPQD 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00