Citrus Sinensis ID: 044602
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 674 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK50 | 685 | ABC transporter G family | yes | no | 0.985 | 0.969 | 0.766 | 0.0 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.873 | 0.799 | 0.460 | 1e-163 | |
| Q93YS4 | 751 | ABC transporter G family | no | no | 0.909 | 0.816 | 0.450 | 1e-162 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.859 | 0.893 | 0.432 | 1e-142 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.813 | 0.815 | 0.440 | 1e-135 | |
| Q9SZR9 | 638 | ABC transporter G family | no | no | 0.867 | 0.916 | 0.425 | 1e-134 | |
| Q84TH5 | 662 | ABC transporter G family | no | no | 0.887 | 0.903 | 0.390 | 1e-120 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.777 | 0.797 | 0.328 | 3e-77 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.752 | 0.771 | 0.341 | 4e-77 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.747 | 0.769 | 0.328 | 2e-76 |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/695 (76%), Positives = 598/695 (86%), Gaps = 31/695 (4%)
Query: 1 MEIGRE-EEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYS-EIDIVDE-- 56
MEI R EE+E+ MQI GSNG H++EFM QAYLRN+YS EIDI +E
Sbjct: 1 MEIRRSTEEVEENHV--------MQIT-GSNGIVHNMEFMPQAYLRNQYSSEIDIDEEFV 51
Query: 57 SSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGI 115
S+ +D PLPIFLKFEDVEYKVR N AS +N VK++VSKV + + D D YKHILKGI
Sbjct: 52 STYPLEDAPLPIFLKFEDVEYKVR-NSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGI 110
Query: 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD 175
TGS PGEILALMGPSGSGKTTLLKI+GGRLTD+VKG +TYNDIPY+P++KRRIGFVTQD
Sbjct: 111 TGSTGPGEILALMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQD 170
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
DVLLPQLTVEETL FAAFLRLP +M+++QKYA+++MI+KELGLERCR TRVGGGF+KGIS
Sbjct: 171 DVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGIS 230
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
GGERKR SI YEILVDPSLLLLDEPTSGLDSTSA KL+ +LQ VAKAGRTVITTIHQPSS
Sbjct: 231 GGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSS 290
Query: 296 RMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISV 355
RMFHMFDKLLLISEG+P +YGKARESMEYFSSL +PEIAMNPAEFLLDLATGQV+DIS+
Sbjct: 291 RMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISL 350
Query: 356 PEALSASQGAS-DSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTL 412
P+ L A++ A DSE +LKYL+ +YKT LEPKEKEE+HRN+K PEHLQ+AIQVKKDWTL
Sbjct: 351 PDELLAAKTAQPDSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQVKKDWTL 410
Query: 413 SWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIF 472
SWWDQF I+SRRTFRER RDYFDKLRLVQ+LGVAVVLGLLWWKS++ TEA LRDQVGL+F
Sbjct: 411 SWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMF 470
Query: 473 YICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMV 532
YICIFWTSSS+FGAVYVFPFEKIYLVKERKA+MYRLSVYYVCSTLCDMVAHV YPT FM+
Sbjct: 471 YICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMI 530
Query: 533 IVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLT 592
IVYFMA F R +PCF T+ ILL+AITSQGAGE GA+VLSIKRAGMIASL+LMLFLLT
Sbjct: 531 IVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLT 590
Query: 593 GGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVN 639
GGYYVQHIPKFMQWLKYLSF++YGFRLLLK + GCR LQSS SFDT+N
Sbjct: 591 GGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTIN 650
Query: 640 LSGGLQEVWVLLGMALAYRLCAYFCLRKRINKCHL 674
L+GGLQE+WVLL MA YRLCAYFCLRK+I+ CHL
Sbjct: 651 LNGGLQELWVLLAMAFGYRLCAYFCLRKKISICHL 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/634 (46%), Positives = 410/634 (64%), Gaps = 45/634 (7%)
Query: 52 DIVDESSSIEK---DRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDY 108
DI +SS+ K + PI+LKF D+ YKV S S
Sbjct: 124 DIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSE------------------- 164
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPALKR 167
K IL GI+GS PGE+LALMGPSGSGKTTLL +GGR ++ G+++YND PY+ LK
Sbjct: 165 KSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLKT 224
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
RIGFVTQDDVL P LTV+ETL + A LRLP + Q+K R +++ELGLERC+ T +G
Sbjct: 225 RIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIG 284
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
G F++G+SGGERKR IG EI+ +PSLLLLDEPTS LDST+A K++Q+L +AKAG+T++
Sbjct: 285 GSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIV 344
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLAT 347
TTIHQPSSR+FH FDKL+++S G +Y+GKA E+M YFSS+G P +AMNPAEFLLDL
Sbjct: 345 TTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVN 404
Query: 348 GQVTDISVPEALSASQGASDSEV----------LKYLQLKYKTQLEPKEKEEHHRNKKIP 397
G + DISVP AL E+ +YL+ YKTQ+ EK + +
Sbjct: 405 GNMNDISVPSALKEKMKIIRLELYVRNVKCDVETQYLEEAYKTQIAVMEKMKLMAPVPLD 464
Query: 398 EHLQLAIQV-KKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKS 456
E ++L I K++W LSWW+Q+ ++S R +ER DYF LR+ Q L A++LGLLWW+S
Sbjct: 465 EEVKLMITCPKREWGLSWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAIILGLLWWQS 524
Query: 457 QSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCST 516
T++ R GL+F+I +FW +F A++ FP E+ L KER+++MYRLS Y+V T
Sbjct: 525 DITSQRPTRS--GLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAYFVART 582
Query: 517 LCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIK 576
D+ + P +F+V+VYFMAG + FFL++ + L + +QG G GA+++ +K
Sbjct: 583 TSDLPLDLILPVLFLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAIGASLMDLK 642
Query: 577 RAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFD 636
+A +AS+ +M F+L GGY+V+ +P F+ W++++SF Y+ ++LL+K +Q +
Sbjct: 643 KATTLASVTVMTFMLAGGYFVKKVPFFIAWIRFMSFNYHTYKLLVK------VQYEEIME 696
Query: 637 TVN---LSGGLQEVWVLLGMALAYRLCAYFCLRK 667
+VN + GL+EV L+ M + YRL AYF LR+
Sbjct: 697 SVNGEEIESGLKEVSALVAMIIGYRLVAYFSLRR 730
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1473), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/659 (45%), Positives = 419/659 (63%), Gaps = 46/659 (6%)
Query: 30 NGFGHSIEFMSQAYLRNRYSEIDIVDESSSIEKDRP-------LPIFLKFEDVEYKVRIN 82
GF E +S + +S+ +++ E K +P LPIFLKF DV YKV I
Sbjct: 113 TGFAMPPEEISDS---KPFSDDEMIPEDIEAGKKKPKFQAEPTLPIFLKFRDVTYKVVIK 169
Query: 83 KAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIV 142
K S K IL GI+GS+ PGE+LALMGPSGSGKTTLL ++
Sbjct: 170 KLTSSVE-------------------KEILTGISGSVNPGEVLALMGPSGSGKTTLLSLL 210
Query: 143 GGRLT-DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN 201
GR++ G++TYND PY+ LK +IGFVTQDDVL P LTV+ETL +AA LRLP +
Sbjct: 211 AGRISQSSTGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLT 270
Query: 202 RQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261
R+QK R +++ELGLERC+ T +GG F++G+SGGERKR SIG EI+++PSLLLLDEPT
Sbjct: 271 REQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPT 330
Query: 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321
SGLDST+A + I +L +A+AG+TVITTIHQPSSR+FH FDKL+L+ G +Y+GK+ E+
Sbjct: 331 SGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEA 390
Query: 322 MEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEAL------------SASQGASDSE 369
++YFSS+G P IAMNPAEFLLDLA G + DISVP L + + S +
Sbjct: 391 LDYFSSIGCSPLIAMNPAEFLLDLANGNINDISVPSELDDRVQVGNSGRETQTGKPSPAA 450
Query: 370 VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQL-AIQVKKDWTLSWWDQFHIISRRTFRE 428
V +YL Y+T++ +EK++ + E + + ++K+ W WW+Q+ I+ R +E
Sbjct: 451 VHEYLVEAYETRVAEQEKKKLLDPVPLDEEAKAKSTRLKRQWGTCWWEQYCILFCRGLKE 510
Query: 429 RWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVY 488
R +YF LR+ Q L AV+LGLLWW+S T L+DQ GL+F+I +FW +F A++
Sbjct: 511 RRHEYFSWLRVTQVLSTAVILGLLWWQSDIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIF 570
Query: 489 VFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFF 548
FP E+ L KER ADMYRLS Y++ T D+ P++F+++VYFM G + + FF
Sbjct: 571 AFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDFILPSLFLLVVYFMTGLRISPYPFF 630
Query: 549 LTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLK 608
L++ + L I +QG G GA ++ +K+A +AS+ +M F+L GG++V+ +P F+ W++
Sbjct: 631 LSMLTVFLCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFMLAGGFFVKKVPVFISWIR 690
Query: 609 YLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAYFCLRK 667
YLSF Y+ ++LLLK + + S + + + GL EV L+ M YRL AY LR+
Sbjct: 691 YLSFNYHTYKLLLK---VQYQDFAVSINGMRIDNGLTEVAALVVMIFGYRLLAYLSLRQ 746
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 267/617 (43%), Positives = 382/617 (61%), Gaps = 38/617 (6%)
Query: 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILA 126
PI LKFE+V YKV+I + + KS K IL GITG +CPGE LA
Sbjct: 50 PITLKFEEVVYKVKIEQTSQCMGSWKS-------------KEKTILNGITGMVCPGEFLA 96
Query: 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186
++GPSGSGKTTLL +GGRL+ G + YN P++ +KRR GFV QDDVL P LTV E
Sbjct: 97 MLGPSGSGKTTLLSALGGRLSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWE 156
Query: 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGY 246
TL F A LRLP ++ R +K V ++ ELGL RC ++ +GG +GISGGE+KR SIG
Sbjct: 157 TLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQ 216
Query: 247 EILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306
E+L++PSLLLLDEPTSGLDST+A++++ ++++A GRTV+TTIHQPSSR++HMFDK++L
Sbjct: 217 EMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVL 276
Query: 307 ISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGAS 366
+SEG P+YYG A ++EYFSSLGF + +NPA+ LLDLA G D + +
Sbjct: 277 LSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANGIPPDTQKETSEQEQKTVK 336
Query: 367 DSEVLKY---LQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISR 423
++ V Y + K K +L E + K ++L+ + W +WW QF ++ +
Sbjct: 337 ETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLK-----SEQWCTTWWYQFTVLLQ 391
Query: 424 RTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSI 483
R RER + F+KLR+ Q + VA + GLLWW T ++ ++D+ L+F+ +FW +
Sbjct: 392 RGVRERRFESFNKLRIFQVISVAFLGGLLWWH---TPKSHIQDRTALLFFFSVFWGFYPL 448
Query: 484 FGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRT 543
+ AV+ FP EK L+KER + MYRLS Y++ + D+ + PT F+ I+Y+M G K
Sbjct: 449 YNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLKPD 508
Query: 544 VPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKF 603
F L+L +L + +QG G FGA +++IK+A +AS+ ++FL+ GGYYVQ IP F
Sbjct: 509 PTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPF 568
Query: 604 MQWLKYLSFLYYGFRLLL-------------KPRGCRNLQSSPSFDTVNLSGGLQEVWVL 650
+ WLKYLS+ YY ++LLL K CR + P+ ++ L+ +V+V+
Sbjct: 569 IVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCR-VGDFPAIKSMGLNNLWIDVFVM 627
Query: 651 LGMALAYRLCAYFCLRK 667
M + YRL AY L +
Sbjct: 628 GVMLVGYRLMAYMALHR 644
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/574 (44%), Positives = 369/574 (64%), Gaps = 26/574 (4%)
Query: 58 SSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITG 117
SS+ + PI LKFE++ Y ++ SQ K + +LK ++G
Sbjct: 56 SSVLRQSLRPIILKFEELTYSIKSQTGKGSY--------WFGSQEP--KPNRLVLKCVSG 105
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV 177
+ PGE+LA++GPSGSGKTTL+ + GRL + G ++YN P+ ++KR+ GFVTQDDV
Sbjct: 106 IVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRKTGFVTQDDV 165
Query: 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG 237
L P LTV ETL + A LRLP + R++K +V+M++ +LGL RC ++ +GGG I+GISGG
Sbjct: 166 LYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGG 225
Query: 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297
ERKR SIG E+LV+PSLLLLDEPTSGLDST+A +++ L+ +A+ GRTV+TTIHQPSSR+
Sbjct: 226 ERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRL 285
Query: 298 FHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIA-MNPAEFLLDLATGQVTDISVP 356
+ MFDK+L++SEG P+Y G + MEYF S+G+ P + +NPA+F+LDLA G +D
Sbjct: 286 YRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANGITSDTKQY 345
Query: 357 EALSASQGASD-----SEVLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKK--- 408
+ + + G D + V + L YK L P KEE R P+ A KK
Sbjct: 346 DQIE-TNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRT--FPQDQTNARLRKKAIT 402
Query: 409 -DWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQ 467
W SWW QF ++ +R +ER + F LR+ + V+++ GLLWW S+ A L+DQ
Sbjct: 403 NRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWWHSRV---AHLQDQ 459
Query: 468 VGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYP 527
VGL+F+ IFW +F A++ FP E+ L+KER + +YRLS YY+ T+ D+ + P
Sbjct: 460 VGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILP 519
Query: 528 TIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILM 587
TIF+ I Y+M G K ++ F +TL +L + +QG G GA ++ K+A ++S++++
Sbjct: 520 TIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLML 579
Query: 588 LFLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLL 621
+FLL GGYY+QHIP F+ WLKY+SF +Y ++LL+
Sbjct: 580 VFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLV 613
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/637 (42%), Positives = 389/637 (61%), Gaps = 52/637 (8%)
Query: 59 SIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGS 118
SI K P+ LKFE++ Y V++ DS K + + ILKG+TG
Sbjct: 26 SIFKKANNPVTLKFENLVYTVKLK----DSQGCFGKNDKT--------EERTILKGLTGI 73
Query: 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTD---DVKGNITYNDIPYNPALKRRIGFVTQD 175
+ PGEILA++GPSGSGKT+LL +GGR+ + + GNI+YN+ P + A+KR GFVTQD
Sbjct: 74 VKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQD 133
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
D L P LTV ETLVF A LRLP + +Q+K + + ++ ELGL+RC+ T +GG F++G+S
Sbjct: 134 DALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVS 193
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
GGERKR SIG EIL++PSLL LDEPTSGLDST+A +++ +L ++A+ GRTV+TTIHQPSS
Sbjct: 194 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPSS 253
Query: 296 RMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIA-MNPAEFLLDLATGQVTDIS 354
R+F+MFDKLLL+SEG PVY+G +M+YF+S+G+ P + +NP++FLLD+A G +D S
Sbjct: 254 RLFYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERINPSDFLLDIANGVGSDES 313
Query: 355 V-PEALSASQGASDSEVLKYLQLKYKTQLEP----KEKEEHHRNKKIPEHLQLAIQVKKD 409
PEA+ A+ L YKT L + K + K E ++A D
Sbjct: 314 QRPEAMKAA-----------LVAFYKTNLLDSVINEVKGQDDLCNKPRESSRVATNTYGD 362
Query: 410 WTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVG 469
W +WW QF ++ +R ++R D F +++ Q V+ + GLLWW+ T ++L+DQ+G
Sbjct: 363 WPTTWWQQFCVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQ---TKISRLQDQIG 419
Query: 470 LIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTI 529
L+F+I FW +F ++ FP E+ L KER + MYRLS Y++ + D+ + PT
Sbjct: 420 LLFFISSFWAFFPLFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLPMELILPTC 479
Query: 530 FMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLF 589
F+VI Y+MAG + FF+TL +L+ + S G G GA V+ K A + S+I++ F
Sbjct: 480 FLVITYWMAGLNHNLANFFVTLLVLLVHVLVSGGLGLALGALVMDQKSATTLGSVIMLTF 539
Query: 590 LLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDT------------ 637
LL GGYYVQH+P F+ W+KY+S YY ++LL+ + N + P D
Sbjct: 540 LLAGGYYVQHVPVFISWIKYVSIGYYTYKLLILGQYTAN-ELYPCGDNGKLRCHVGDFEG 598
Query: 638 ---VNLSGGLQEVWVLLGMALAYRLCAYFCLRKRINK 671
+ + GL L M + YR+ AY L RI K
Sbjct: 599 IKHIGFNSGLVSALALTAMLVVYRVIAYIAL-TRIGK 634
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/648 (39%), Positives = 362/648 (55%), Gaps = 50/648 (7%)
Query: 56 ESSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVS--KVASQLSLDKDYKHILK 113
E S+ PI LKF DV Y+V+I+ ++DS +K ++ + S + + + IL
Sbjct: 26 EPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTILS 85
Query: 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRL-TDDVKGNITYNDIPYNPALKRRIGFV 172
G+TG I PGE +A++GPSGSGK+TLL V GRL ++ G I ND +R GFV
Sbjct: 86 GVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRTGFV 145
Query: 173 TQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK 232
QDD+L P LTV ETLVF A LRLP ++ R K + ++ ELGL +C +T VG FI+
Sbjct: 146 AQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIR 205
Query: 233 GISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291
GISGGERKR SI +E+L++PSLL+LDEPTSGLD+T+A +L+Q L +A G+TV+T+IH
Sbjct: 206 GISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIH 265
Query: 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVT 351
QPSSR+F MFD +LL+SEG ++ GK R++M YF S+GF P MNPA+FLLDLA G
Sbjct: 266 QPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANGVCQ 325
Query: 352 DISVPEALSASQGASDSEVLKYLQLKYKTQLEPKEK---EEHHRNKKIPEHLQLAIQVKK 408
V E V + L Y T L P+ K E H + ++ +
Sbjct: 326 TDGVTE-------REKPNVRQTLVTAYDTLLAPQVKTCIEVSHFPQDNARFVKTRVNGGG 378
Query: 409 DWTL--SWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRD 466
T +W+ Q I+ R +ER + FD LR+ Q + +++ GL+WW S + D
Sbjct: 379 ITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQVVAASILCGLMWWHSD---YRDVHD 435
Query: 467 QVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFY 526
++GL+F+I IFW F AV+ FP E+ +ER + MY LS Y++ L + +
Sbjct: 436 RLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVL 495
Query: 527 PTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLIL 586
P F+ Y+M + + F LTL +LL + SQG G GAA++ K+A I ++ +
Sbjct: 496 PASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTM 555
Query: 587 MLFLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR---------------------- 624
+ F+LTGGYYV +P M W+KY+S +Y +RLL+ +
Sbjct: 556 LAFVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVAIQYGSGEEILRMLGCDSKGKQGAS 615
Query: 625 -----GCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAYFCLRK 667
GCR ++ + + G V VL M YR+ AY LR+
Sbjct: 616 AATSAGCRFVEE----EVIGDVGMWTSVGVLFLMFFGYRVLAYLALRR 659
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 188/572 (32%), Positives = 303/572 (52%), Gaps = 48/572 (8%)
Query: 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMG 129
L F + Y+V++ +V K A K IL I G + PG + A++G
Sbjct: 37 LSFHHITYRVKVKSGF--------LVRKTAE--------KEILSDINGIMKPG-LNAILG 79
Query: 130 PSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188
P+G GK++LL ++ R + G++ N P K G+V QDDV++ LTV E L
Sbjct: 80 PTGGGKSSLLDVLAARKDPRGLSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENL 139
Query: 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248
F+A LRLP M +K R+ I+KELGL++ ++VG F +GISGGERKRTSIG E+
Sbjct: 140 QFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMEL 199
Query: 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308
+ DPS+L LDEPT+GLDS++AN ++ +L++++K GRT+I +IHQP +F +FD L L++
Sbjct: 200 ITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLA 259
Query: 309 EGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDS 368
G +++G A++++EYF+S G+ E NPA+F LD+ G + A+ ++G D
Sbjct: 260 SGKLMFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSS------AVMLNRGEQDH 313
Query: 369 EVLKYLQLKYKTQLEPKEKEEHHRNKKI-----PEHLQLAIQVKKD---------WTLSW 414
E K + + + + E + N I E QL + KK + S+
Sbjct: 314 EANKTEEPSKREKPIIENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSF 373
Query: 415 WDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLL---WWKSQSTTEAQLRDQVGLI 471
Q I+RR+F+ + V L V V+LGL+ + ++++ G+
Sbjct: 374 CHQLRWIARRSFKNLLG---NPQASVAQLIVTVILGLIIGALYFGLKNDPTGMQNRAGVF 430
Query: 472 FYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPT-IF 530
F++ +S+ AV +F EK + E + YR+S Y+ + D++ F P+ I+
Sbjct: 431 FFLTTNQCFTSV-SAVELFVVEKKLFIHEYISGYYRVSSYFFGKLVSDLLPMRFLPSVIY 489
Query: 531 MVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFL 590
I+YFM G KRTV FF+ +F +++VA T+ A + A ++ ++ + +
Sbjct: 490 TCILYFMLGLKRTVEAFFIMMFTLIMVAYTASSMALAIAAGQSVVSVATLLMTISFVFMM 549
Query: 591 LTGGYYV--QHIPKFMQWLKYLSFLYYGFRLL 620
L G V + I ++ WL+Y S YGF L
Sbjct: 550 LFSGLLVNLRTIGPWLSWLQYFSIPRYGFTAL 581
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/527 (34%), Positives = 291/527 (55%), Gaps = 20/527 (3%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPALKR 167
K IL I G + PG + A++GP+G GK++LL ++ R + G++ N P K
Sbjct: 60 KEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPKGLSGDVLINGAPQPAHFKC 118
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
G+V QDDV++ LTV E L F+A LRLP M +K R+ I+KELGLE+ ++VG
Sbjct: 119 CSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKVG 178
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
FI+GISGGERKRTSIG E++ DPS+L LDEPT+GLDS++AN ++ +L++++K GRT+I
Sbjct: 179 TQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 238
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLAT 347
+IHQP +F +FD L L++ G V++G A++++EYF+S G+ E NPA+F LD+
Sbjct: 239 FSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVIN 298
Query: 348 GQVTDISVPEALSASQGASDSE-------VLKYLQLKY-KTQLEPKEKEEHHRNKKIPEH 399
G + + + ++ E V++ L Y + + + K E + E
Sbjct: 299 GDSSAVMLNREEQDNEANKTEEPSKGEKPVIENLSEFYINSAIYGETKAELDQLPGAQEK 358
Query: 400 LQLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLL---WWKS 456
+ + + S+ Q I+RR+F+ + V L V V+LGL+ +
Sbjct: 359 KGTSAFKEPVYVTSFCHQLRWIARRSFKNLLG---NPQASVAQLIVTVILGLIIGAIYFD 415
Query: 457 QSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCST 516
A ++++ G++F++ SS+ AV +F EK + E + YR+S Y+
Sbjct: 416 LKYDAAGMQNRAGVLFFLTTNQCFSSV-SAVELFVVEKKLFIHEYISGYYRVSSYFFGKV 474
Query: 517 LCDMVAHVFYPT-IFMVIVYFMAGFKRTVPCFFLTLFAILLVAIT--SQGAGELFGAAVL 573
+ D++ F P+ IF ++YFM G K+TV FF+ +F +++VA T S G +V+
Sbjct: 475 MSDLLPMRFLPSVIFTCVLYFMLGLKKTVDAFFIMMFTLIMVAYTASSMALAIATGQSVV 534
Query: 574 SIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLL 620
S+ M + + M+ ++ I ++ WL+Y S YGF L
Sbjct: 535 SVATLLMTIAFVFMMLFSGLLVNLRTIGPWLSWLQYFSIPRYGFTAL 581
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/529 (32%), Positives = 294/529 (55%), Gaps = 25/529 (4%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPALKR 167
K IL I G + PG + A++GP+G GK++LL ++ R + G++ N P K
Sbjct: 61 KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPANFKC 119
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
G+V QDDV++ LTV E L F+A LRL M +K R+ +++ELGL++ ++VG
Sbjct: 120 NSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVG 179
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
FI+G+SGGERKRTSIG E++ DPS+L LDEPT+GLDS++AN ++ +L++++K GRT+I
Sbjct: 180 TQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 239
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLAT 347
+IHQP +F +FD L L++ G +++G A+E++ YF S G+ E NPA+F LD+
Sbjct: 240 FSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIIN 299
Query: 348 GQVTDISV--PEALSASQGASDSE-----VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHL 400
G T +++ E A++ S+ + K ++ + + K E H+ +
Sbjct: 300 GDSTAVALNREEDFKATEIIEPSKQDKPLIEKLAEIYVNSSFYKETKAELHQLSGGEKKK 359
Query: 401 QLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLL------WW 454
++ + + +T S+ Q +S+R+F+ + + + Q + V VVLGL+
Sbjct: 360 KITVFKEISYTTSFCHQLRWVSKRSFKNLLGN--PQASIAQII-VTVVLGLVIGAIYFGL 416
Query: 455 KSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVC 514
K+ ST ++++ G++F++ SS+ AV +F EK + E + YR+S Y++
Sbjct: 417 KNDST---GIQNRAGVLFFLTTNQCFSSV-SAVELFVVEKKLFIHEYISGYYRVSSYFLG 472
Query: 515 STLCDMVAHVFYPT-IFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVL 573
L D++ P+ IF IVYFM G K FF+ +F +++VA ++ A
Sbjct: 473 KLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIAAGQS 532
Query: 574 SIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLL 620
+ A ++ ++ + ++ G V I ++ WL+Y S YGF L
Sbjct: 533 VVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFSIPRYGFTAL 581
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 674 | ||||||
| 255563590 | 687 | ATP-binding cassette transporter, putati | 0.995 | 0.976 | 0.824 | 0.0 | |
| 359494218 | 686 | PREDICTED: ABC transporter G family memb | 0.994 | 0.976 | 0.805 | 0.0 | |
| 224061258 | 672 | white-brown-complex ABC transporter fami | 0.964 | 0.967 | 0.820 | 0.0 | |
| 147810332 | 665 | hypothetical protein VITISV_035231 [Viti | 0.943 | 0.956 | 0.795 | 0.0 | |
| 297834142 | 685 | abc transporter family protein [Arabidop | 0.985 | 0.969 | 0.771 | 0.0 | |
| 22331045 | 685 | ABC-2 type transporter family protein [A | 0.985 | 0.969 | 0.766 | 0.0 | |
| 10172610 | 693 | ABC transporter-like protein [Arabidopsi | 0.985 | 0.958 | 0.758 | 0.0 | |
| 356552502 | 686 | PREDICTED: ABC transporter G family memb | 0.994 | 0.976 | 0.746 | 0.0 | |
| 356501657 | 686 | PREDICTED: ABC transporter G family memb | 0.994 | 0.976 | 0.744 | 0.0 | |
| 357495159 | 692 | ABC transporter G family member [Medicag | 0.988 | 0.962 | 0.730 | 0.0 |
| >gi|255563590|ref|XP_002522797.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223538035|gb|EEF39648.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/690 (82%), Positives = 622/690 (90%), Gaps = 19/690 (2%)
Query: 1 MEIGREEEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSI 60
MEI +E+EIEDMS L+P TM SM IA GS+GFGHSIE+MSQAYLRNRYS IDI + S ++
Sbjct: 1 MEIRKEDEIEDMSVLSPPTMRSMHIA-GSSGFGHSIEYMSQAYLRNRYSGIDIEEYSLNM 59
Query: 61 EKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSI 119
+DRPLPIFLKFEDVEY+VR N AS +NPVK+VVSKVASQL L++D YK ILKGITGSI
Sbjct: 60 NQDRPLPIFLKFEDVEYRVR-NSQASSANPVKAVVSKVASQLHLEQDNYKKILKGITGSI 118
Query: 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179
PGEILALMGPSGSGKTTLLKI+GGRLTD+VKG+ITYNDIPYN ALKRRIGFVTQDDVL
Sbjct: 119 GPGEILALMGPSGSGKTTLLKIIGGRLTDNVKGSITYNDIPYNAALKRRIGFVTQDDVLF 178
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGER 239
PQLTVEETLVFAAFLRLP NM+RQQKYARV +I+KELGLERCRHTR+GGGFIKGISGGER
Sbjct: 179 PQLTVEETLVFAAFLRLPENMSRQQKYARVDIIVKELGLERCRHTRIGGGFIKGISGGER 238
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299
KRTSIGYEILVDPSLLLLDEPTSGLDSTSAN+L+QVLQ +AKAGRTVITTIHQPSSRMFH
Sbjct: 239 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLQVLQGLAKAGRTVITTIHQPSSRMFH 298
Query: 300 MFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEAL 359
MFDKLLLISEGYPVYYGKAR+SMEYFSSL FIPEI MNPAEFL+DLATGQV DISVP+ L
Sbjct: 299 MFDKLLLISEGYPVYYGKARDSMEYFSSLSFIPEITMNPAEFLIDLATGQVNDISVPQDL 358
Query: 360 SASQGASDSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQ 417
SA GA DS+ V+KYLQLKYKT++EP++K E+HR PEHLQLAIQVKKDWTLSWW Q
Sbjct: 359 SAPPGAPDSDKAVIKYLQLKYKTEIEPRDK-ENHRLATAPEHLQLAIQVKKDWTLSWWAQ 417
Query: 418 FHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIF 477
F II +RT+RER RDYFDKLRLVQA+GVA++LGLLWWKSQ+ TEAQLRDQVGL+FYICIF
Sbjct: 418 FMIIFKRTYRERCRDYFDKLRLVQAVGVALLLGLLWWKSQTGTEAQLRDQVGLMFYICIF 477
Query: 478 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFM 537
WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDM+AHVFYPT FMV+VYFM
Sbjct: 478 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMMAHVFYPTFFMVVVYFM 537
Query: 538 AGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYV 597
AGFKRT+PCFF TLF ILL+A+TSQGAGELFGAA LSIKRAGM ASLILMLFLLTGGYYV
Sbjct: 538 AGFKRTIPCFFFTLFTILLIAVTSQGAGELFGAASLSIKRAGMFASLILMLFLLTGGYYV 597
Query: 598 QHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGL 644
QHIPKFMQWLKYLSF+YYGFRLLLK + GCR LQ+SPSFDTVNL GGL
Sbjct: 598 QHIPKFMQWLKYLSFMYYGFRLLLKVQYDGEELYECGSKGGCRPLQTSPSFDTVNLKGGL 657
Query: 645 QEVWVLLGMALAYRLCAYFCLRKRINKCHL 674
+EVWVLL MAL YR+ AYFCLR+RI+ CHL
Sbjct: 658 EEVWVLLAMALGYRIIAYFCLRRRIHVCHL 687
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494218|ref|XP_002267511.2| PREDICTED: ABC transporter G family member 26-like [Vitis vinifera] gi|296089962|emb|CBI39781.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/690 (80%), Positives = 623/690 (90%), Gaps = 20/690 (2%)
Query: 1 MEIGREEEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSI 60
M++G+++EIE M+ L+P +M SM IA GSNGFGH+I+FMSQAY+RNR SEIDI D+S
Sbjct: 1 MDMGKQDEIEAMA-LSPPSMSSMHIA-GSNGFGHNIDFMSQAYIRNRNSEIDIEDDSFRT 58
Query: 61 EKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSI 119
+D PLPIFLKFEDVEY VR N A+ NPVK+VVS+VASQLS+++D YK ILKGITGSI
Sbjct: 59 HQDHPLPIFLKFEDVEYGVRNN--AASRNPVKAVVSRVASQLSMEQDNYKRILKGITGSI 116
Query: 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179
PGEIL LMGPSGSGKTTLLKI+GGRL ++VKG ITYNDIPYNPALKRRIGFVTQDDVLL
Sbjct: 117 GPGEILGLMGPSGSGKTTLLKIIGGRLHENVKGTITYNDIPYNPALKRRIGFVTQDDVLL 176
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGER 239
PQLTVEETLVFAAFLRLP NM+R+QKYARV+MI+KELGLERCRHT+VGGGF+KGISGGER
Sbjct: 177 PQLTVEETLVFAAFLRLPSNMSRKQKYARVEMIVKELGLERCRHTKVGGGFVKGISGGER 236
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299
KRTSIGYEILVDPSLLLLDEPTSGLDSTSAN+L+Q+LQ VAKAGRT+ITTIHQPSSRMFH
Sbjct: 237 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLQILQGVAKAGRTIITTIHQPSSRMFH 296
Query: 300 MFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEAL 359
MF+K+LLI+EGYPVYYGKARESM+YFSSL F+PEIAMNPAEFLLDLATGQV DIS+P+ L
Sbjct: 297 MFNKILLIAEGYPVYYGKARESMDYFSSLRFVPEIAMNPAEFLLDLATGQVNDISIPQDL 356
Query: 360 SASQGASDSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQ 417
A Q +SE V+KYLQ+KYKT+LEPKEKEE+H KIPEHLQLAIQVKKDWT+SWW+Q
Sbjct: 357 QAPQVPPESERDVVKYLQVKYKTELEPKEKEENHWATKIPEHLQLAIQVKKDWTMSWWEQ 416
Query: 418 FHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIF 477
F I++RRTFRER RDYFDKLRLVQALGVAV+LGLLWWKS++ TEAQLRDQ+GL+FYICIF
Sbjct: 417 FLILTRRTFRERCRDYFDKLRLVQALGVAVLLGLLWWKSKTGTEAQLRDQIGLMFYICIF 476
Query: 478 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFM 537
WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCST+CDMVAHV YPTIFMVI+YFM
Sbjct: 477 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTMCDMVAHVVYPTIFMVILYFM 536
Query: 538 AGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYV 597
AGFKRTV CFFLTLF ILL+AITSQGAGELFGAAVLSIKRAGMIASL+LMLFLLTGGYYV
Sbjct: 537 AGFKRTVSCFFLTLFGILLIAITSQGAGELFGAAVLSIKRAGMIASLVLMLFLLTGGYYV 596
Query: 598 QHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGL 644
QHIP+FMQWLKY+SF+YYGFRL+LK + GCR LQSSPSFDTVNL+GGL
Sbjct: 597 QHIPQFMQWLKYISFMYYGFRLMLKVQYSGEQLYECGSRGGCRTLQSSPSFDTVNLNGGL 656
Query: 645 QEVWVLLGMALAYRLCAYFCLRKRINKCHL 674
+EVWVLL MA+ YR AY CLR+RI+ CHL
Sbjct: 657 KEVWVLLAMAVGYRFFAYLCLRRRIDVCHL 686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061258|ref|XP_002300394.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847652|gb|EEE85199.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/674 (82%), Positives = 604/674 (89%), Gaps = 24/674 (3%)
Query: 23 MQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSIEKDRPLPIFLKFEDVEYKVRIN 82
MQIA GSNGFGHSI+FMS+AYLRNRYS IDI ++ ++ KDRPLPIFLKFEDVEYKVR N
Sbjct: 1 MQIA-GSNGFGHSIDFMSEAYLRNRYSGIDIEEDCLAMNKDRPLPIFLKFEDVEYKVR-N 58
Query: 83 KAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSICPGEILALMGPSGSGKTTLLKI 141
AS +NPVK+VVSKVASQL+LD D YK ILKG+TGS+CPGEILALMGPSGSGKTTLLKI
Sbjct: 59 SKASSANPVKAVVSKVASQLNLDHDNYKMILKGVTGSVCPGEILALMGPSGSGKTTLLKI 118
Query: 142 VGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN 201
+GGRL+++VKG ITY+DI YN +KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM+
Sbjct: 119 IGGRLSENVKGRITYDDIAYNAVIKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMS 178
Query: 202 RQQKYARVQMILKELGLE------RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLL 255
RQQKYARV+MI+KELG+E RCRH+RVGGGF+KGISGGERKRTSIGYEILVDPSLL
Sbjct: 179 RQQKYARVEMIIKELGIESFFHGHRCRHSRVGGGFVKGISGGERKRTSIGYEILVDPSLL 238
Query: 256 LLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYY 315
LLDEPTSGLDSTSAN+L+Q+LQ +AKAGRT+ITTIHQPSSR+FHMFDKLLLISEGYPVYY
Sbjct: 239 LLDEPTSGLDSTSANRLLQILQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYY 298
Query: 316 GKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSE--VLKY 373
GKARESMEYFS L FIPEIAMNPAEFLLDLATGQV DISVPE LSA G DSE V+KY
Sbjct: 299 GKARESMEYFSCLRFIPEIAMNPAEFLLDLATGQVNDISVPEDLSAPHGVLDSEKAVIKY 358
Query: 374 LQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRERWRDY 433
L LKYKTQLEPKEKEE+H++K++PE LQLAIQVK+DWTLSWW+QF I+ +RTFRER RDY
Sbjct: 359 LHLKYKTQLEPKEKEENHQSKRVPEPLQLAIQVKRDWTLSWWEQFVIMYKRTFRERCRDY 418
Query: 434 FDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFE 493
FDKLRLVQALGVAV+LGLLWWKS++ TEAQLRDQVGL+FYICIFWTSSSIFGAVYVFPFE
Sbjct: 419 FDKLRLVQALGVAVLLGLLWWKSKTGTEAQLRDQVGLMFYICIFWTSSSIFGAVYVFPFE 478
Query: 494 KIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFA 553
KIYLVKERKADMYRLSVYYVCSTL DMVAHVFYPT FMVIVYFMAGFKRTVPCFF TLF
Sbjct: 479 KIYLVKERKADMYRLSVYYVCSTLSDMVAHVFYPTFFMVIVYFMAGFKRTVPCFFFTLFV 538
Query: 554 ILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFL 613
+LL+ ITSQG GEL GAA LSIKRAGM ASLILMLFLLTGGYYVQHIPKFMQW+K+LSF+
Sbjct: 539 MLLIVITSQGVGELCGAASLSIKRAGMFASLILMLFLLTGGYYVQHIPKFMQWMKFLSFM 598
Query: 614 YYGFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLC 660
+YGFRLLLK + GCR LQSSPSFD VNL GGLQEVWVLL MAL YRL
Sbjct: 599 FYGFRLLLKVQYDGDELYECESEGGCRPLQSSPSFDMVNLKGGLQEVWVLLAMALGYRLI 658
Query: 661 AYFCLRKRINKCHL 674
AYFCLR+RIN CHL
Sbjct: 659 AYFCLRRRINLCHL 672
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810332|emb|CAN73913.1| hypothetical protein VITISV_035231 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/674 (79%), Positives = 594/674 (88%), Gaps = 38/674 (5%)
Query: 27 AGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSIEKDRPLPIFLKFEDVEYKVRINKAAS 86
AGSNGFGH+I+FMSQAYLRNR SEIDI D+S +D PLPIFLKFEDVEY VR N A+
Sbjct: 4 AGSNGFGHNIDFMSQAYLRNRNSEIDIEDDSFXTHQDHPLPIFLKFEDVEYGVRNN--AA 61
Query: 87 DSNPVKSVVSKVASQLSLDKD-YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145
NPVK+VVS+VASQLS+++D YK ILKGITGSI PGEIL LMGPSGSGKTTLLKI+GGR
Sbjct: 62 SRNPVKAVVSRVASQLSMEQDNYKRILKGITGSIGPGEILGLMGPSGSGKTTLLKIIGGR 121
Query: 146 LTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK 205
L ++VKG ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP NM+R+QK
Sbjct: 122 LHENVKGTITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPSNMSRKQK 181
Query: 206 YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
YARV+MI+KELGLERCRHT+VGGGF+KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD
Sbjct: 182 YARVEMIVKELGLERCRHTKVGGGFVKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 241
Query: 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYF 325
STSAN+L+Q+LQ VAKAGRT+ITTIHQPSSRMFHMF+K+LLI+EGYPVYYGKARESM+YF
Sbjct: 242 STSANRLLQILQGVAKAGRTIITTIHQPSSRMFHMFNKILLIAEGYPVYYGKARESMDYF 301
Query: 326 SSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSE--VLKYLQLKYKTQLE 383
SSL F+PEIAMNPAEFLLDLATGQV DIS+P+ L A Q +SE V+KYLQ+KYKT+LE
Sbjct: 302 SSLRFVPEIAMNPAEFLLDLATGQVNDISIPQDLQAPQVPPESERDVVKYLQVKYKTELE 361
Query: 384 PKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQAL 443
PKEKEE+H KIPEHLQLAIQVKKDWT+SWW+Q ER RDYFDKLRLVQAL
Sbjct: 362 PKEKEENHWVTKIPEHLQLAIQVKKDWTMSWWEQ----------ERCRDYFDKLRLVQAL 411
Query: 444 GVAVVLGLLWWKSQSTTEAQLRD----------QVGLIFYICIFWTSSSIFGAVYVFPFE 493
GVAV+LGLLWWKS++ TEAQL+ Q+GL+FYICIFWTSSSIFGAVYVFPFE
Sbjct: 412 GVAVLLGLLWWKSKTGTEAQLQRFRNESFHPLLQIGLMFYICIFWTSSSIFGAVYVFPFE 471
Query: 494 KIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFA 553
KIYLVKERKADMYRLSVYYVCST+CDMVAHV YPTIFMVI+YFMAGFKRTV CFFLTLF
Sbjct: 472 KIYLVKERKADMYRLSVYYVCSTMCDMVAHVVYPTIFMVILYFMAGFKRTVSCFFLTLFG 531
Query: 554 ILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFL 613
ILL+AITSQGAGELFGAAVLSIKRAGMIASL+LMLFLLTGGYYVQHIP+FMQWLKY+SF+
Sbjct: 532 ILLIAITSQGAGELFGAAVLSIKRAGMIASLVLMLFLLTGGYYVQHIPQFMQWLKYISFM 591
Query: 614 YYGFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLC 660
YYGFRL+LK + GCR LQSSPSFDTVNL+GGL+EVWVLL MA+ YR+
Sbjct: 592 YYGFRLMLKVQYSGEQLYECGSRGGCRTLQSSPSFDTVNLNGGLKEVWVLLAMAVGYRVF 651
Query: 661 AYFCLRKRINKCHL 674
AY CLR+RI+ CHL
Sbjct: 652 AYLCLRRRIDVCHL 665
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834142|ref|XP_002884953.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297330793|gb|EFH61212.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/695 (77%), Positives = 598/695 (86%), Gaps = 31/695 (4%)
Query: 1 MEIGRE-EEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYS-EIDIVDE-- 56
MEI R EE+E+ MQI GSNG H++EFM QAYLRN+YS EIDI +E
Sbjct: 1 MEIRRSTEEVEENHV--------MQIT-GSNGIVHNMEFMPQAYLRNQYSSEIDIDEEFV 51
Query: 57 SSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGI 115
SS +D PLPIFLKFEDVEYKVR N AS +N VK++VSKV + + D D YKHILKGI
Sbjct: 52 SSYPLEDAPLPIFLKFEDVEYKVR-NSQASSANLVKTMVSKVVTHTNPDPDGYKHILKGI 110
Query: 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD 175
TGS PGEILALMGPSGSGKTTLLKI+GGRLTD+VKG +TYNDIPY+P++KRRIGFVTQD
Sbjct: 111 TGSTGPGEILALMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQD 170
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
DVLLPQLTVEETL FAAFLRLP +M+++QKYA+++MI+KELGLERCR TRVGGGF+KGIS
Sbjct: 171 DVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGIS 230
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
GGERKR SI YEILVDPSLLLLDEPTSGLDSTSA KL+ +LQ VAKAGRTVITTIHQPSS
Sbjct: 231 GGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSS 290
Query: 296 RMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISV 355
RMFHMFDKLLLISEG+P +YGKA+ESMEYFSSL +PEIAMNPAEFLLDLATGQV+DIS+
Sbjct: 291 RMFHMFDKLLLISEGHPAFYGKAKESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISL 350
Query: 356 P-EALSASQGASDSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTL 412
P E LSA DSE ++KYL+ +YKT LEPKEKEE+HRN+K PEHLQ+AIQVKKDWTL
Sbjct: 351 PDELLSAKTAQPDSEEVLVKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQVKKDWTL 410
Query: 413 SWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIF 472
SWWDQF I+SRRTFRER RDYFDKLRLVQ+LGVAVVLGLLWWKS++ TEA LRDQVGL+F
Sbjct: 411 SWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMF 470
Query: 473 YICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMV 532
YICIFWTSSS+FGAVYVFPFEKIYLVKERKA+MYRLSVYYVCSTLCDMVAHV YPT FM+
Sbjct: 471 YICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMI 530
Query: 533 IVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLT 592
IVYFMAGF RT+PCF T+ ILL+AITSQGAGE GA+VLSIKRAGMIASL+LMLFLLT
Sbjct: 531 IVYFMAGFNRTIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLT 590
Query: 593 GGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVN 639
GGYYVQHIPKFMQWLKYLSF++YGFRLLLK + GCR LQSS SFDTVN
Sbjct: 591 GGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTVN 650
Query: 640 LSGGLQEVWVLLGMALAYRLCAYFCLRKRINKCHL 674
L+GGLQE+WVLL MA YRLCAYFCLRK+I+ CHL
Sbjct: 651 LNGGLQELWVLLAMAFGYRLCAYFCLRKKISICHL 685
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331045|ref|NP_187928.2| ABC-2 type transporter family protein [Arabidopsis thaliana] gi|374095361|sp|Q9LK50.2|AB26G_ARATH RecName: Full=ABC transporter G family member 26; Short=ABC transporter ABCG.26; Short=AtABCG26; AltName: Full=Putative white-brown complex homolog protein 27; Short=AtWBC27 gi|332641791|gb|AEE75312.1| ABC-2 type transporter family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/695 (76%), Positives = 598/695 (86%), Gaps = 31/695 (4%)
Query: 1 MEIGRE-EEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYS-EIDIVDE-- 56
MEI R EE+E+ MQI GSNG H++EFM QAYLRN+YS EIDI +E
Sbjct: 1 MEIRRSTEEVEENHV--------MQIT-GSNGIVHNMEFMPQAYLRNQYSSEIDIDEEFV 51
Query: 57 SSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGI 115
S+ +D PLPIFLKFEDVEYKVR N AS +N VK++VSKV + + D D YKHILKGI
Sbjct: 52 STYPLEDAPLPIFLKFEDVEYKVR-NSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGI 110
Query: 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD 175
TGS PGEILALMGPSGSGKTTLLKI+GGRLTD+VKG +TYNDIPY+P++KRRIGFVTQD
Sbjct: 111 TGSTGPGEILALMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQD 170
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
DVLLPQLTVEETL FAAFLRLP +M+++QKYA+++MI+KELGLERCR TRVGGGF+KGIS
Sbjct: 171 DVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGIS 230
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
GGERKR SI YEILVDPSLLLLDEPTSGLDSTSA KL+ +LQ VAKAGRTVITTIHQPSS
Sbjct: 231 GGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSS 290
Query: 296 RMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISV 355
RMFHMFDKLLLISEG+P +YGKARESMEYFSSL +PEIAMNPAEFLLDLATGQV+DIS+
Sbjct: 291 RMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISL 350
Query: 356 PEALSASQGAS-DSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTL 412
P+ L A++ A DSE +LKYL+ +YKT LEPKEKEE+HRN+K PEHLQ+AIQVKKDWTL
Sbjct: 351 PDELLAAKTAQPDSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQVKKDWTL 410
Query: 413 SWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIF 472
SWWDQF I+SRRTFRER RDYFDKLRLVQ+LGVAVVLGLLWWKS++ TEA LRDQVGL+F
Sbjct: 411 SWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMF 470
Query: 473 YICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMV 532
YICIFWTSSS+FGAVYVFPFEKIYLVKERKA+MYRLSVYYVCSTLCDMVAHV YPT FM+
Sbjct: 471 YICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMI 530
Query: 533 IVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLT 592
IVYFMA F R +PCF T+ ILL+AITSQGAGE GA+VLSIKRAGMIASL+LMLFLLT
Sbjct: 531 IVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLT 590
Query: 593 GGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVN 639
GGYYVQHIPKFMQWLKYLSF++YGFRLLLK + GCR LQSS SFDT+N
Sbjct: 591 GGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTIN 650
Query: 640 LSGGLQEVWVLLGMALAYRLCAYFCLRKRINKCHL 674
L+GGLQE+WVLL MA YRLCAYFCLRK+I+ CHL
Sbjct: 651 LNGGLQELWVLLAMAFGYRLCAYFCLRKKISICHL 685
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10172610|dbj|BAB01414.1| ABC transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/703 (75%), Positives = 598/703 (85%), Gaps = 39/703 (5%)
Query: 1 MEIGRE-EEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYS-EIDIVDE-- 56
MEI R EE+E+ MQI GSNG H++EFM QAYLRN+YS EIDI +E
Sbjct: 1 MEIRRSTEEVEENHV--------MQIT-GSNGIVHNMEFMPQAYLRNQYSSEIDIDEEFV 51
Query: 57 SSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGI 115
S+ +D PLPIFLKFEDVEYKVR N AS +N VK++VSKV + + D D YKHILKGI
Sbjct: 52 STYPLEDAPLPIFLKFEDVEYKVR-NSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGI 110
Query: 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD 175
TGS PGEILALMGPSGSGKTTLLKI+GGRLTD+VKG +TYNDIPY+P++KRRIGFVTQD
Sbjct: 111 TGSTGPGEILALMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQD 170
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER--------CRHTRVG 227
DVLLPQLTVEETL FAAFLRLP +M+++QKYA+++MI+KELGLER CR TRVG
Sbjct: 171 DVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERFIEKHNERCRRTRVG 230
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
GGF+KGISGGERKR SI YEILVDPSLLLLDEPTSGLDSTSA KL+ +LQ VAKAGRTVI
Sbjct: 231 GGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 290
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLAT 347
TTIHQPSSRMFHMFDKLLLISEG+P +YGKARESMEYFSSL +PEIAMNPAEFLLDLAT
Sbjct: 291 TTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLAT 350
Query: 348 GQVTDISVPEALSASQGAS-DSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAI 404
GQV+DIS+P+ L A++ A DSE +LKYL+ +YKT LEPKEKEE+HRN+K PEHLQ+AI
Sbjct: 351 GQVSDISLPDELLAAKTAQPDSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAI 410
Query: 405 QVKKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQL 464
QVKKDWTLSWWDQF I+SRRTFRER RDYFDKLRLVQ+LGVAVVLGLLWWKS++ TEA L
Sbjct: 411 QVKKDWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHL 470
Query: 465 RDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHV 524
RDQVGL+FYICIFWTSSS+FGAVYVFPFEKIYLVKERKA+MYRLSVYYVCSTLCDMVAHV
Sbjct: 471 RDQVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHV 530
Query: 525 FYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASL 584
YPT FM+IVYFMA F R +PCF T+ ILL+AITSQGAGE GA+VLSIKRAGMIASL
Sbjct: 531 LYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASL 590
Query: 585 ILMLFLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQS 631
+LMLFLLTGGYYVQHIPKFMQWLKYLSF++YGFRLLLK + GCR LQS
Sbjct: 591 VLMLFLLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQS 650
Query: 632 SPSFDTVNLSGGLQEVWVLLGMALAYRLCAYFCLRKRINKCHL 674
S SFDT+NL+GGLQE+WVLL MA YRLCAYFCLRK+I+ CHL
Sbjct: 651 SSSFDTINLNGGLQELWVLLAMAFGYRLCAYFCLRKKISICHL 693
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552502|ref|XP_003544606.1| PREDICTED: ABC transporter G family member 26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1044 bits (2699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/689 (74%), Positives = 597/689 (86%), Gaps = 19/689 (2%)
Query: 1 MEIGREEEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSI 60
ME RE+EIEDMS ++P ++GSMQIA GSNGFGHS+EFMSQAYL N Y+EIDI E S
Sbjct: 1 MENKREDEIEDMS-MSPPSIGSMQIA-GSNGFGHSMEFMSQAYLPNMYTEIDIKVEDSGF 58
Query: 61 EKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSI 119
++D PLPI+LKFEDVE+KVR ++AA + NPVK+++SKV +Q +++D YK ILK ITGSI
Sbjct: 59 DQDPPLPIYLKFEDVEFKVRDSQAAPN-NPVKTMMSKVGTQHHVEEDRYKKILKSITGSI 117
Query: 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179
PGEILALMGPSGSGKTTLL++VGGRL D+VKG ITYND+ +NPA+KRRIGFVTQ+DVL
Sbjct: 118 GPGEILALMGPSGSGKTTLLRVVGGRLIDNVKGKITYNDVRFNPAVKRRIGFVTQEDVLF 177
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGER 239
PQLTVEETL+F+AFLRLP NM++QQKYARV+ +K+LGLERCRHT++GGG++KGISGGER
Sbjct: 178 PQLTVEETLIFSAFLRLPSNMSKQQKYARVENTVKDLGLERCRHTKIGGGYLKGISGGER 237
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299
KRT+IGYEILVDPSLLLLDEPTSGLDSTSAN+L+ LQ +AK GRT+ITTIHQPSSR+FH
Sbjct: 238 KRTNIGYEILVDPSLLLLDEPTSGLDSTSANRLLLTLQGLAKGGRTIITTIHQPSSRIFH 297
Query: 300 MFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEAL 359
MFDKLLLISEG P+YYGKA++SM+YFSSL FIPEI MNPAEFLLDLATGQV +ISVP+ +
Sbjct: 298 MFDKLLLISEGCPIYYGKAKDSMQYFSSLRFIPEIPMNPAEFLLDLATGQVNNISVPQYI 357
Query: 360 SASQGASDSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQ 417
Q + DS V+ YLQLKYK LEPKEKEE+H PEHLQLAIQVK+DWT+SW DQ
Sbjct: 358 LKDQESVDSSKAVINYLQLKYKDTLEPKEKEENHGAANTPEHLQLAIQVKRDWTVSWCDQ 417
Query: 418 FHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIF 477
F I+ +RTFR R +DYFDKLRLVQALG+A++LGLLWWKS + TEAQ+RDQVGL+FYICIF
Sbjct: 418 FVILYKRTFRARSKDYFDKLRLVQALGIALLLGLLWWKSSTNTEAQVRDQVGLMFYICIF 477
Query: 478 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFM 537
WTSS IFGAVYVFPFEK+YLVKERKADMYRLSVYY STLCDMVAHVFYPT FM+I+YFM
Sbjct: 478 WTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYASSTLCDMVAHVFYPTFFMLILYFM 537
Query: 538 AGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYV 597
AGFK TV CFFLTLFA+LL+AITSQGAGELFGAAV+SI+RAGM+ASLILMLFLLTGGYYV
Sbjct: 538 AGFKSTVACFFLTLFAVLLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYV 597
Query: 598 QHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGL 644
QH+PK M WLKYLSF+YYGFRLLLK + GCR LQSSPSFDTVNL GGL
Sbjct: 598 QHVPKMMHWLKYLSFVYYGFRLLLKVQYSGEQPYECESEGGCRTLQSSPSFDTVNLEGGL 657
Query: 645 QEVWVLLGMALAYRLCAYFCLRKRINKCH 673
E WVL+ MAL +R+ AYFCLR+RI+ C+
Sbjct: 658 TEAWVLVAMALCFRVLAYFCLRRRIDICN 686
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501657|ref|XP_003519640.1| PREDICTED: ABC transporter G family member 26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/689 (74%), Positives = 595/689 (86%), Gaps = 19/689 (2%)
Query: 1 MEIGREEEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSI 60
ME RE+EIEDMS ++P ++GSMQIA GSNGFGHS+EFMSQAYL N Y+EIDI + SS
Sbjct: 1 MEKEREDEIEDMS-MSPPSIGSMQIA-GSNGFGHSMEFMSQAYLPNMYTEIDIKVQDSSF 58
Query: 61 EKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSI 119
+D PLPI+LKFEDVE++V I+ ++ +NPVK+++SKV +Q +++D YK ILK ITGSI
Sbjct: 59 NQDPPLPIYLKFEDVEFRV-IDSQSASNNPVKTMMSKVGTQHHVEEDRYKKILKSITGSI 117
Query: 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179
PGEILALMGPSGSGKTTLL++VGGRL D+VKG ITYNDI +NPA+KRRIGFVTQ+DVL
Sbjct: 118 GPGEILALMGPSGSGKTTLLRVVGGRLIDNVKGKITYNDIRFNPAVKRRIGFVTQEDVLF 177
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGER 239
PQLTVEETL+F+AFLRLP NM++QQKY+RV+ +K+L LERCRHT++GGG++KGISGGER
Sbjct: 178 PQLTVEETLIFSAFLRLPSNMSKQQKYSRVENTVKDLSLERCRHTKIGGGYLKGISGGER 237
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299
KRTSIGYEILVDPSLLLLDEPTSGLDSTSAN+L+ LQ +AK GRT+ITTIHQPSSR+FH
Sbjct: 238 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLLTLQGLAKGGRTIITTIHQPSSRIFH 297
Query: 300 MFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEAL 359
MFDKLLLISEGYP+YYGKA++SM+YFSSL FIPEI MNPAEFLLDLATGQV +ISVP +
Sbjct: 298 MFDKLLLISEGYPIYYGKAKDSMQYFSSLRFIPEIPMNPAEFLLDLATGQVNNISVPLDI 357
Query: 360 SASQGASDSE--VLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQ 417
Q ++DS V+ YLQ+KYK LEPKEK E+H PEHLQLAIQVKKDWT+SW DQ
Sbjct: 358 LKDQESADSSKAVINYLQVKYKDTLEPKEKGENHGAANTPEHLQLAIQVKKDWTVSWCDQ 417
Query: 418 FHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIF 477
F I+ +RTFR R +DYFDKLRLVQALG+A++LGLLWWKS TEAQ+RDQVGL+FYICIF
Sbjct: 418 FVILYKRTFRARSKDYFDKLRLVQALGIALLLGLLWWKSSINTEAQVRDQVGLMFYICIF 477
Query: 478 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFM 537
WTSS IFGAVYVFPFEK+YLVKERKADMYRLSVYY STLCDMVAHVFYPT FMVI+YFM
Sbjct: 478 WTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYASSTLCDMVAHVFYPTFFMVILYFM 537
Query: 538 AGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYV 597
AGFKRTV CFFLTLFA+ L+AITSQGAGELFGAAV+SI+RAGM+ASLILMLFLLTGGYYV
Sbjct: 538 AGFKRTVACFFLTLFAVWLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYV 597
Query: 598 QHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGL 644
QH+PK MQWLKYLSF+YYGFRLLLK + GCR LQSSPSFDTVNL GGL
Sbjct: 598 QHVPKMMQWLKYLSFVYYGFRLLLKVQYSGEQPYECESEGGCRTLQSSPSFDTVNLEGGL 657
Query: 645 QEVWVLLGMALAYRLCAYFCLRKRINKCH 673
E WVL+ MAL +R+ AYFCLR+RI+ C+
Sbjct: 658 TEAWVLVVMALCFRVLAYFCLRRRIDICN 686
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495159|ref|XP_003617868.1| ABC transporter G family member [Medicago truncatula] gi|355519203|gb|AET00827.1| ABC transporter G family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/695 (73%), Positives = 594/695 (85%), Gaps = 29/695 (4%)
Query: 1 MEIGREEEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSI 60
ME RE+EIE S++P ++GSMQIA FGHSIEFMSQAYL NRYSEIDI E SS
Sbjct: 1 MENVREDEIEANMSMSPPSVGSMQIAGS---FGHSIEFMSQAYLHNRYSEIDIRVEESSF 57
Query: 61 EKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD--YKHILKGITGS 118
+D PLP++LKFEDVE+KVR ++ AS NPVK+++SKVA+Q ++++ YK ILKGITGS
Sbjct: 58 NQDPPLPVYLKFEDVEFKVRNSQTAS-KNPVKTMMSKVATQHHVEENNKYKTILKGITGS 116
Query: 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR--------IG 170
I PGEILALMGPSGSGKTTLL++VGGRL DDVKG I+YND+PY+PALKRR IG
Sbjct: 117 IGPGEILALMGPSGSGKTTLLRVVGGRLLDDVKGKISYNDVPYSPALKRRLNIVLEHQIG 176
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
FVTQ+DVL PQLTVEETL+F+AFLRLP NM++Q+KYARV+ +++LGLERCRHT++GGG+
Sbjct: 177 FVTQEDVLFPQLTVEETLIFSAFLRLPTNMSKQEKYARVENTIRDLGLERCRHTKIGGGY 236
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
+KGISGGERKRTSIGYEILV+PSLLLLDEPTSGLDSTSANKL+ LQ +AKAGRT+ITTI
Sbjct: 237 LKGISGGERKRTSIGYEILVEPSLLLLDEPTSGLDSTSANKLLLTLQGLAKAGRTIITTI 296
Query: 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQV 350
HQPSSR+F+MFDKLLLISEG PVYYGKAR++ EYFSSL F+PEI MNPAEFLLDLATGQV
Sbjct: 297 HQPSSRIFNMFDKLLLISEGSPVYYGKARDTAEYFSSLRFVPEIPMNPAEFLLDLATGQV 356
Query: 351 TDISVPEALSASQGASDSEV--LKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKK 408
DIS+P+ + Q ++D V +KYLQLKYK LEPKEKEE+HR P+HLQLAIQVKK
Sbjct: 357 NDISIPQDILKDQESTDPSVTIIKYLQLKYKDILEPKEKEENHRGANTPKHLQLAIQVKK 416
Query: 409 DWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQV 468
+WT+SW DQF I+ +RT+R R+++YFD LRLVQALG+A++LGLLWWKS + TEAQLRDQV
Sbjct: 417 EWTVSWLDQFTILYKRTYRARFKEYFDILRLVQALGIALLLGLLWWKSSTNTEAQLRDQV 476
Query: 469 GLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPT 528
GL+FYICIFWTSS IFGAVYVFPFEK+YL KERKADMYRLSVYY STLCDMVAHV YPT
Sbjct: 477 GLMFYICIFWTSSCIFGAVYVFPFEKVYLRKERKADMYRLSVYYASSTLCDMVAHVLYPT 536
Query: 529 IFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILML 588
+FM+IVYFMAGFK T CFFLTLFA+LL+AITSQGAGELFGAAV+SI+RAGM+ASLILML
Sbjct: 537 VFMLIVYFMAGFKSTAACFFLTLFAVLLIAITSQGAGELFGAAVMSIQRAGMVASLILML 596
Query: 589 FLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR-------------GCRNLQSSPSF 635
FLLTGGYYVQHIPKFMQWLKY+SF+YYGFRLLLK + GCR LQSSPSF
Sbjct: 597 FLLTGGYYVQHIPKFMQWLKYMSFMYYGFRLLLKVQYSGDQLYECESDGGCRTLQSSPSF 656
Query: 636 DTVNLSGGLQEVWVLLGMALAYRLCAYFCLRKRIN 670
DTVNL GGL EVW+L+ MA+ +R AYFCLR++I+
Sbjct: 657 DTVNLKGGLSEVWILIAMAICFRFLAYFCLRRKID 691
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 674 | ||||||
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.964 | 0.948 | 0.721 | 7.6e-254 | |
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.860 | 0.772 | 0.443 | 2.8e-130 | |
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.860 | 0.895 | 0.407 | 4.7e-119 | |
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.808 | 0.823 | 0.388 | 5.8e-103 | |
| FB|FBgn0020445 | 1017 | E23 "Early gene at 23" [Drosop | 0.381 | 0.252 | 0.411 | 8.1e-73 | |
| ZFIN|ZDB-GENE-070424-84 | 673 | abcg1 "ATP-binding cassette, s | 0.356 | 0.356 | 0.391 | 5.3e-71 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.402 | 0.341 | 0.432 | 1.1e-68 | |
| UNIPROTKB|E7ERE5 | 786 | ABCG1 "ATP-binding cassette su | 0.749 | 0.642 | 0.294 | 2.9e-68 | |
| UNIPROTKB|E9PGV9 | 824 | ABCG1 "ATP-binding cassette su | 0.749 | 0.612 | 0.294 | 2.9e-68 | |
| UNIPROTKB|P45844 | 678 | ABCG1 "ATP-binding cassette su | 0.746 | 0.741 | 0.297 | 2.9e-68 |
| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2444 (865.4 bits), Expect = 7.6e-254, P = 7.6e-254
Identities = 485/672 (72%), Positives = 541/672 (80%)
Query: 23 MQIAAGSNGFGHSIEFMSQAYLRNRYXXXXXXXXXXXXXX---XRPLPIFLKFEDVEYKV 79
MQI GSNG H++EFM QAYLRN+Y PLPIFLKFEDVEYKV
Sbjct: 16 MQIT-GSNGIVHNMEFMPQAYLRNQYSSEIDIDEEFVSTYPLEDAPLPIFLKFEDVEYKV 74
Query: 80 RINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSICPGEILALMGPSGSGKTTL 138
R N AS +N VK++VSKV + + D D YKHILKGITGS PGEILALMGPSGSGKTTL
Sbjct: 75 R-NSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEILALMGPSGSGKTTL 133
Query: 139 LKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG 198
LKI+GGRLTD+VKG +TYNDIPY+P++KRRIGFVTQDDVLLPQLTVEETL FAAFLRLP
Sbjct: 134 LKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTVEETLAFAAFLRLPS 193
Query: 199 NMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLD 258
+M+++QKYA+++MI+KELGLERCR TRV ERKR SI YEILVDPSLLLLD
Sbjct: 194 SMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLD 253
Query: 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318
EPTSGLDSTSA KL+ +LQ VAKAGRTVITTIHQPSSRMFHMFDKLLLISEG+P +YGKA
Sbjct: 254 EPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGHPAFYGKA 313
Query: 319 RESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGAS-DSE--VXXXXX 375
RESMEYFSSL +PEIAMNPAEFLLDLATGQV+DIS+P+ L A++ A DSE +
Sbjct: 314 RESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISLPDELLAAKTAQPDSEEVLLKYLK 373
Query: 376 XXXXXXXEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFD 435
EPKEKEE+HRN+K PEHLQ+AIQVKKDWTLSWWDQF I+SRRTFRER RDYFD
Sbjct: 374 QRYKTDLEPKEKEENHRNRKAPEHLQIAIQVKKDWTLSWWDQFLILSRRTFRERRRDYFD 433
Query: 436 KXXXXXXXXXXXXXXXXWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKI 495
K WWKS++ TEA LRDQVGL+FYICIFWTSSS+FGAVYVFPFEKI
Sbjct: 434 KLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMFYICIFWTSSSLFGAVYVFPFEKI 493
Query: 496 YLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAIL 555
YLVKERKA+MYRLSVYYVCSTLCDMVAHV YPT FM+IVYFMA F R +PCF T+ IL
Sbjct: 494 YLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMIIVYFMAEFNRNIPCFLFTVLTIL 553
Query: 556 LVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFLYY 615
L+AITSQGAGE GA+VLSIKRAGMIASL+LMLFLLTGGYYVQHIPKFMQWLKYLSF++Y
Sbjct: 554 LIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLTGGYYVQHIPKFMQWLKYLSFMHY 613
Query: 616 GFRLLLKPR-------------GCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAY 662
GFRLLLK + GCR LQSS SFDT+NL+GGLQE+WVLL MA YRLCAY
Sbjct: 614 GFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTINLNGGLQELWVLLAMAFGYRLCAY 673
Query: 663 FCLRKRINKCHL 674
FCLRK+I+ CHL
Sbjct: 674 FCLRKKISICHL 685
|
|
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
Identities = 273/616 (44%), Positives = 377/616 (61%)
Query: 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEIL 125
LPIFLKF DV YKV V+ K+ S S++K+ IL GI+GS+ PGE+L
Sbjct: 153 LPIFLKFRDVTYKV--------------VIKKLTS--SVEKE---ILTGISGSVNPGEVL 193
Query: 126 ALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV 184
ALMGPSGSGKTTLL ++ GR++ G++TYND PY+ LK +IGFVTQDDVL P LTV
Sbjct: 194 ALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTV 253
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSI 244
+ETL +AA LRLP + R+QK R +++ELGLERC+ T + ERKR SI
Sbjct: 254 KETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSI 313
Query: 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304
G EI+++PSLLLLDEPTSGLDST+A + I +L +A+AG+TVITTIHQPSSR+FH FDKL
Sbjct: 314 GNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKL 373
Query: 305 LLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALS--AS 362
+L+ G +Y+GK+ E+++YFSS+G P IAMNPAEFLLDLA G + DISVP L
Sbjct: 374 ILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGNINDISVPSELDDRVQ 433
Query: 363 QGASDSEVXXXX---XXXXXXXXEPKEKEEHHRNKK-----IP---EHLQLAIQVKKDWT 411
G S E E E + KK +P E + ++K+ W
Sbjct: 434 VGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLDEEAKAKSTRLKRQWG 493
Query: 412 LSWWDQFHIISRRTFRERWRDYFDKXXXXXXXXXXXXXXXXWWKSQSTTEAQLRDQVGLI 471
WW+Q+ I+ R +ER +YF WW+S T L+DQ GL+
Sbjct: 494 TCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQSDIRTPMGLQDQAGLL 553
Query: 472 FYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFM 531
F+I +FW +F A++ FP E+ L KER ADMYRLS Y++ T D+ P++F+
Sbjct: 554 FFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDFILPSLFL 613
Query: 532 VIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLL 591
++VYFM G + + FFL++ + L I +QG G GA ++ +K+A +AS+ +M F+L
Sbjct: 614 LVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFML 673
Query: 592 TGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQEVWVLL 651
GG++V+ +P F+ W++YLSF Y+ ++LLLK + + S + + + GL EV L+
Sbjct: 674 AGGFFVKKVPVFISWIRYLSFNYHTYKLLLK---VQYQDFAVSINGMRIDNGLTEVAALV 730
Query: 652 GMALAYRLCAYFCLRK 667
M YRL AY LR+
Sbjct: 731 VMIFGYRLLAYLSLRQ 746
|
|
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 251/616 (40%), Positives = 362/616 (58%)
Query: 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILA 126
PI LKFE+V YKV+I + + KS K+ K IL GITG +CPGE LA
Sbjct: 50 PITLKFEEVVYKVKIEQTSQCMGSWKS------------KE-KTILNGITGMVCPGEFLA 96
Query: 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186
++GPSGSGKTTLL +GGRL+ G + YN P++ +KRR GFV QDDVL P LTV E
Sbjct: 97 MLGPSGSGKTTLLSALGGRLSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWE 156
Query: 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGY 246
TL F A LRLP ++ R +K V ++ ELGL RC ++ + E+KR SIG
Sbjct: 157 TLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQ 216
Query: 247 EILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306
E+L++PSLLLLDEPTSGLDST+A++++ ++++A GRTV+TTIHQPSSR++HMFDK++L
Sbjct: 217 EMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVL 276
Query: 307 ISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGAS 366
+SEG P+YYG A ++EYFSSLGF + +NPA+ LLDLA G D + +
Sbjct: 277 LSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANGIPPDTQKETSEQEQKTVK 336
Query: 367 DSEVXXXXXXXXXXXXEPKEKEEHHRNKKIPEHLQLAIQ-VKKD-WTLSWWDQFHIISRR 424
++ V E H E+ + A + +K + W +WW QF ++ +R
Sbjct: 337 ETLVSAYEKNISTKLKAELCNAESHSY----EYTKAAAKNLKSEQWCTTWWYQFTVLLQR 392
Query: 425 TFRERWRDYFDKXXXXXXXXXXXXXXXXWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIF 484
RER + F+K WW T ++ ++D+ L+F+ +FW ++
Sbjct: 393 GVRERRFESFNKLRIFQVISVAFLGGLLWWH---TPKSHIQDRTALLFFFSVFWGFYPLY 449
Query: 485 GAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTV 544
AV+ FP EK L+KER + MYRLS Y++ + D+ + PT F+ I+Y+M G K
Sbjct: 450 NAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLKPDP 509
Query: 545 PCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFM 604
F L+L +L + +QG G FGA +++IK+A +AS+ ++FL+ GGYYVQ IP F+
Sbjct: 510 TTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPFI 569
Query: 605 QWLKYLSFLYYGFRLLLK-----------PRG--CRNLQSSPSFDTVNLSGGLQEVWVLL 651
WLKYLS+ YY ++LLL +G CR + P+ ++ L+ +V+V+
Sbjct: 570 VWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCR-VGDFPAIKSMGLNNLWIDVFVMG 628
Query: 652 GMALAYRLCAYFCLRK 667
M + YRL AY L +
Sbjct: 629 VMLVGYRLMAYMALHR 644
|
|
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 5.8e-103, Sum P(2) = 5.8e-103
Identities = 219/564 (38%), Positives = 315/564 (55%)
Query: 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVS--KVASQLSLDKDYKHILKGITGSICPGEI 124
PI LKF DV Y+V+I+ ++DS +K ++ + S + + + IL G+TG I PGE
Sbjct: 37 PITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTILSGVTGMISPGEF 96
Query: 125 LALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLT 183
+A++GPSGSGK+TLL V GRL ++ G I ND +R GFV QDD+L P LT
Sbjct: 97 MAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRTGFVAQDDLLYPHLT 156
Query: 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTS 243
V ETLVF A LRLP ++ R K + ++ ELGL +C +T V ERKR S
Sbjct: 157 VRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVS 216
Query: 244 IGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302
I +E+L++PSLL+LDEPTSGLD+T+A +L+Q L +A G+TV+T+IHQPSSR+F MFD
Sbjct: 217 IAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFD 276
Query: 303 KLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQ-----VTDISVPE 357
+LL+SEG ++ GK R++M YF S+GF P MNPA+FLLDLA G VT+ P
Sbjct: 277 TVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANGVCQTDGVTEREKPN 336
Query: 358 ALSASQGASDSEVXXXXXXXXXXXXEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQ 417
A D+ + P++ + + + I +W+ Q
Sbjct: 337 VRQTLVTAYDTLLAPQVKTCIEVSHFPQDNARFVKTRVNGGGITTCIA-------TWFSQ 389
Query: 418 FHIISRRTFRERWRDYFDKXXXXXXXXXXXXXXXXWWKSQSTTEAQLRDQVGLIFYICIF 477
I+ R +ER + FD WW S + D++GL+F+I IF
Sbjct: 390 LCILLHRLLKERRHESFDLLRIFQVVAASILCGLMWWHSDYR---DVHDRLGLLFFISIF 446
Query: 478 WTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFM 537
W F AV+ FP E+ +ER + MY LS Y++ L + + P F+ Y+M
Sbjct: 447 WGVLPSFNAVFTFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVLPASFLTFTYWM 506
Query: 538 AGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYV 597
+ + F LTL +LL + SQG G GAA++ K+A I ++ ++ F+LTGGYYV
Sbjct: 507 VYLRPGIVPFLLTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGYYV 566
Query: 598 QHIPKFMQWLKYLSFLYYGFRLLL 621
+P M W+KY+S +Y +RLL+
Sbjct: 567 NKVPSGMVWMKYVSTTFYCYRLLV 590
|
|
| FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 8.1e-73, Sum P(2) = 8.1e-73
Identities = 107/260 (41%), Positives = 162/260 (62%)
Query: 86 SDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145
S + P S+ L++ + + IL ++G + P E+LA+MGPSGSGKTTLL + G+
Sbjct: 343 SQNQPQHSL-QLTFQNLNVLHNERQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQ 401
Query: 146 LTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK 205
D G++ N P +RRIG+V Q+++ PQLT+ ET+V+ A LRLP +M R +K
Sbjct: 402 RHID-SGSVFLNREPLTKKWRRRIGYVLQEEIFFPQLTLRETVVYTALLRLPESMPRAEK 460
Query: 206 YARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+V IL+ L L C+ T+ E+KR +I E+L +P L+LLDEPTSGLD
Sbjct: 461 MRQVDHILEALELGCCQQTKFGDYLNRGLSGGEKKRANIACELLTNPLLMLLDEPTSGLD 520
Query: 266 STSANKLIQVLQKVAKAG-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324
S SA L++VL++ A+ +T++ ++HQPSS+MFHMFDKLLL+ +G Y+G + +
Sbjct: 521 SHSAISLMKVLKRYAQLEQKTIVISVHQPSSQMFHMFDKLLLLHQGRTAYFGDVQNIYRH 580
Query: 325 FSSLGFIPEIAMNPAEFLLD 344
F +G + NPA+F+L+
Sbjct: 581 FEDIGVTIKPHYNPADFVLE 600
|
|
| ZFIN|ZDB-GENE-070424-84 abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 97/248 (39%), Positives = 154/248 (62%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
K YK +LKGI+G+ G ++A+MGPSG+GK+TL+ I+ G +KG I N P +
Sbjct: 102 KGYKTLLKGISGNFTGGALVAIMGPSGAGKSTLMNILAGYRETGMKGEILINGHPRDLRS 161
Query: 166 KRRIG-FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
R++ ++ QDD+LLP LTV+E ++ +A L+L +++ R IL LGL C T
Sbjct: 162 FRKVSCYIMQDDMLLPHLTVQEAMMVSANLKLQEKDEGRREMVRE--ILTALGLLECAKT 219
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
R +RKR +I E++ +P ++ DEPTSGLDS+S +++ +++ +A+ GR
Sbjct: 220 RTSHLSGG-----QRKRLAIALELVNNPPVMFFDEPTSGLDSSSCFQVVSLMKALAQGGR 274
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLD 344
TVI TIHQPS+++F +FDKL ++S+G +Y GK + Y LG NPA+F+++
Sbjct: 275 TVICTIHQPSAKVFELFDKLYVLSQGQCIYRGKVSSLIPYLRDLGLSCPTYHNPADFIME 334
Query: 345 LATGQVTD 352
+A+G+ D
Sbjct: 335 VASGEYGD 342
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.1e-68, Sum P(3) = 1.1e-68
Identities = 121/280 (43%), Positives = 170/280 (60%)
Query: 77 YKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKT 136
+K RI+ + D N + K + K K IL I G I G I A+MGPSG+GKT
Sbjct: 108 FKNRIDFSFKDINHYVQITEKGKKK----KISKQILTNINGHIESGTIFAIMGPSGAGKT 163
Query: 137 TLLKIVGGRLTDDVKGN--ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194
TLL I+ RL + G + N +N K+ G+VTQ D L+P LTV ETL F A L
Sbjct: 164 TLLDILAHRLNINGSGTMYLNGNKSDFN-IFKKLCGYVTQSDSLMPSLTVRETLNFYAQL 222
Query: 195 RLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXX--ERKRTSIGYEILVDP 252
++P ++ ++K RVQ I+ E+GL RC T V ER+R +I E+L P
Sbjct: 223 KMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGP 282
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312
S++LLDEPTSGLD++++ ++ L+K+AK+GRT+I TIHQP S ++ MFD LLL+ +G
Sbjct: 283 SVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNT 342
Query: 313 VYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTD 352
+YYGKA +++EYF++ G+ NPA+F LDL QV D
Sbjct: 343 IYYGKANKALEYFNANGYHCSEKTNPADFFLDLINTQVED 382
|
|
| UNIPROTKB|E7ERE5 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 154/523 (29%), Positives = 268/523 (51%)
Query: 104 LDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP 163
+++ YK +LKGI+G GE++A+MGPSG+GK+TL+ I+ G +KG + N +P +
Sbjct: 201 MEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDL 260
Query: 164 ALKRRIG-FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
R++ ++ QDD+LLP LTV+E ++ +A L+L +++ V+ IL LGL C
Sbjct: 261 RCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREM--VKEILTALGLLSCA 318
Query: 223 HTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+TR +RKR +I E++ +P ++ DEPTSGLDS S +++ +++ +A+
Sbjct: 319 NTRTGSLSGG-----QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQG 373
Query: 283 GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342
GR++I TIHQPS+++F +FD+L ++S+G VY GK + Y LG NPA+F+
Sbjct: 374 GRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFV 433
Query: 343 LDLATGQVTDISVPEALSASQGASDSE----VXXXXXXXXXXXXEPKEKEEHHRNKKIPE 398
+++A+G+ D + + +G DS+ + P E+ + + K
Sbjct: 434 MEVASGEYGDQNSRLVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEVKQTKRLKGLR 493
Query: 399 HLQLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFDKXXXXXXXXXXXXXXXXWWKSQS 458
+++ ++ S QF I+ +RTF RD +
Sbjct: 494 KDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIG 553
Query: 459 TTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLC 518
++ G +F+ +F +++ V FP E ++E Y L YY+ T+
Sbjct: 554 NEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMA 613
Query: 519 DMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAIL--LVAITSQGAGELFGAAVLSIK 576
D+ + +P + IVY+M F LFA L + ++ +Q G L GAA S++
Sbjct: 614 DVPFQIMFPVAYCSIVYWMTSQPSDAVRF--VLFAALGTMTSLVAQSLGLLIGAASTSLQ 671
Query: 577 RAGMIASLILMLFLLTGGYYVQH--IPKFMQWLKYLSFLYYGF 617
A + + + LL G++V IP ++QW+ Y+S++ YGF
Sbjct: 672 VATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGF 714
|
|
| UNIPROTKB|E9PGV9 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 154/523 (29%), Positives = 268/523 (51%)
Query: 104 LDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP 163
+++ YK +LKGI+G GE++A+MGPSG+GK+TL+ I+ G +KG + N +P +
Sbjct: 239 MEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDL 298
Query: 164 ALKRRIG-FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
R++ ++ QDD+LLP LTV+E ++ +A L+L +++ V+ IL LGL C
Sbjct: 299 RCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREM--VKEILTALGLLSCA 356
Query: 223 HTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+TR +RKR +I E++ +P ++ DEPTSGLDS S +++ +++ +A+
Sbjct: 357 NTRTGSLSGG-----QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQG 411
Query: 283 GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342
GR++I TIHQPS+++F +FD+L ++S+G VY GK + Y LG NPA+F+
Sbjct: 412 GRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFV 471
Query: 343 LDLATGQVTDISVPEALSASQGASDSE----VXXXXXXXXXXXXEPKEKEEHHRNKKIPE 398
+++A+G+ D + + +G DS+ + P E+ + + K
Sbjct: 472 MEVASGEYGDQNSRLVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEVKQTKRLKGLR 531
Query: 399 HLQLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFDKXXXXXXXXXXXXXXXXWWKSQS 458
+++ ++ S QF I+ +RTF RD +
Sbjct: 532 KDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIG 591
Query: 459 TTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLC 518
++ G +F+ +F +++ V FP E ++E Y L YY+ T+
Sbjct: 592 NEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMA 651
Query: 519 DMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAIL--LVAITSQGAGELFGAAVLSIK 576
D+ + +P + IVY+M F LFA L + ++ +Q G L GAA S++
Sbjct: 652 DVPFQIMFPVAYCSIVYWMTSQPSDAVRF--VLFAALGTMTSLVAQSLGLLIGAASTSLQ 709
Query: 577 RAGMIASLILMLFLLTGGYYVQH--IPKFMQWLKYLSFLYYGF 617
A + + + LL G++V IP ++QW+ Y+S++ YGF
Sbjct: 710 VATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGF 752
|
|
| UNIPROTKB|P45844 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 155/521 (29%), Positives = 266/521 (51%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
K YK +LKGI+G GE++A+MGPSG+GK+TL+ I+ G +KG + N +P +
Sbjct: 95 KGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRC 154
Query: 166 KRRIG-FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
R++ ++ QDD+LLP LTV+E ++ +A L+L +++ V+ IL LGL C +T
Sbjct: 155 FRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREM--VKEILTALGLLSCANT 212
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
R +RKR +I E++ +P ++ DEPTSGLDS S +++ +++ +A+ GR
Sbjct: 213 RTGSLSGG-----QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGR 267
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLD 344
++I TIHQPS+++F +FD+L ++S+G VY GK + Y LG NPA+F+++
Sbjct: 268 SIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVME 327
Query: 345 LATGQVTDISVPEALSASQGASDSE----VXXXXXXXXXXXXEPKEKEEHHRNKKIPEHL 400
+A+G+ D + + +G DS+ + P E+ + + K
Sbjct: 328 VASGEYGDQNSRLVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEVKQTKRLKGLRKD 387
Query: 401 QLAIQVKKDWTLSWWDQFHIISRRTFRERWRDYFDKXXXXXXXXXXXXXXXXWWKSQSTT 460
+++ ++ S QF I+ +RTF RD +
Sbjct: 388 SSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNE 447
Query: 461 EAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDM 520
++ G +F+ +F +++ V FP E ++E Y L YY+ T+ D+
Sbjct: 448 AKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADV 507
Query: 521 VAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAIL--LVAITSQGAGELFGAAVLSIKRA 578
+ +P + IVY+M F LFA L + ++ +Q G L GAA S++ A
Sbjct: 508 PFQIMFPVAYCSIVYWMTSQPSDAVRF--VLFAALGTMTSLVAQSLGLLIGAASTSLQVA 565
Query: 579 GMIASLILMLFLLTGGYYVQH--IPKFMQWLKYLSFLYYGF 617
+ + + LL G++V IP ++QW+ Y+S++ YGF
Sbjct: 566 TFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGF 606
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LK50 | AB26G_ARATH | No assigned EC number | 0.7669 | 0.9851 | 0.9693 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 674 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-164 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-135 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-73 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-71 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-68 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-67 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-57 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-57 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-57 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-48 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-41 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-38 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-38 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-38 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-37 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-35 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-34 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-33 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-33 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-32 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-32 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-32 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-31 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-31 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-30 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-30 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-30 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-30 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-29 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-29 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-29 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-29 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-28 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-28 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-28 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-28 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-28 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-27 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-27 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-27 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-27 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-27 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-26 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-26 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-26 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-26 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-26 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-26 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-25 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-25 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-25 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-25 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-25 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-25 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-24 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-24 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-24 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-24 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-23 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-23 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-23 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-23 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-23 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-23 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-23 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-22 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-22 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-22 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-22 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-22 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-21 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-21 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-21 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-21 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-21 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-21 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-21 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-20 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-20 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-20 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-20 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-20 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-20 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-20 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-20 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-20 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-19 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-19 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-19 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-19 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-19 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-19 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-18 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-18 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-18 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-18 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-18 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-18 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-18 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-17 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-17 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-17 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-17 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-17 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-17 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-17 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-17 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-17 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 9e-17 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-16 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-16 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-16 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-16 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-16 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-16 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-16 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-16 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-16 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-15 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-15 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-15 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-15 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-15 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-15 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-15 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-15 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-15 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-15 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-15 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-15 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-14 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-14 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-14 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-14 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-14 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-14 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 7e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-14 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-13 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-13 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-13 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-12 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-12 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-12 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-12 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-12 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-11 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-11 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-11 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-11 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-11 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-11 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-11 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 8e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-09 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-09 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-08 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-08 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 6e-08 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 6e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-07 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 1e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-07 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 2e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-07 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-07 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 8e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-06 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 8e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 2e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 6e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 4e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 4e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 5e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| TIGR01247 | 236 | TIGR01247, drrB, daunorubicin resistance ABC trans | 0.001 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 486 bits (1252), Expect = e-164
Identities = 248/633 (39%), Positives = 375/633 (59%), Gaps = 45/633 (7%)
Query: 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVS--KVASQLSLDKDYKHILKGITGSICPGEI 124
PI LKF DV Y+V+ + + +K ++ S + + IL G+TG PGEI
Sbjct: 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEI 96
Query: 125 LALMGPSGSGKTTLLKIVGGRL-TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLT 183
LA++GPSGSGK+TLL + GR+ ++ G I N+ + +R GFVTQDD+L P LT
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156
Query: 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTS 243
V ETLVF + LRLP ++ +Q+K + ++ ELGL +C +T +G FI+GISGGERKR S
Sbjct: 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216
Query: 244 IGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303
I +E+L++PSLL+LDEPTSGLD+T+A +L+ L +A+ G+T++T++HQPSSR++ MFD
Sbjct: 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276
Query: 304 LLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQ 363
+L++SEG +++GK ++M YF S+GF P MNPA+FLLDLA G + +
Sbjct: 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANG----------VCQTD 326
Query: 364 GASDSE---VLKYLQLKYKTQLEPKEKE--EHHRNKKIPEHLQLAIQVKKDWT------L 412
G S+ E V + L Y T L PK K E + + K+ +
Sbjct: 327 GVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISIS 386
Query: 413 SWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIF 472
+W++QF I+ +R+ +ER + F+ LR+ Q + A++ GL+WW S ++D++GL+F
Sbjct: 387 TWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR---DVQDRLGLLF 443
Query: 473 YICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMV 532
+I IFW F +V+VFP E+ VKER + MY LS Y++ + D+ + PTIF+
Sbjct: 444 FISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLT 503
Query: 533 IVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLT 592
+ Y+MAG K + F LTL +L + SQG G GAA++ K+A I ++ ++ F+LT
Sbjct: 504 VTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLT 563
Query: 593 GGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPR-----------GCRNLQSSPS----FDT 637
GG+YV +P M W+KY+S +Y +RLL+ + GC S F
Sbjct: 564 GGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623
Query: 638 VNLSGGLQ---EVWVLLGMALAYRLCAYFCLRK 667
+++G + V VL+ M + YRL AY LR+
Sbjct: 624 EDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-135
Identities = 192/617 (31%), Positives = 316/617 (51%), Gaps = 43/617 (6%)
Query: 84 AASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143
+ K +VS++ ++ KH+LK ++G PGE+LA+MG SG+GKTTL+ +
Sbjct: 13 RVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA 72
Query: 144 GRLTDDVK--GNITYNDIPYN-PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200
R VK G++ N +P + ++ +V QDD+ +P LTV E L+F A LR+P +
Sbjct: 73 FRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132
Query: 201 NRQQKYARVQMILKELGLERCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259
+++K RV +L+ LGL +C +TR+G G +KG+SGGERKR + E+L DP LL DE
Sbjct: 133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192
Query: 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319
PTSGLDS A ++QVL+ +A+ G+T+I TIHQPSS +F +FDK++L++EG Y G
Sbjct: 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPD 252
Query: 320 ESMEYFSSLGF-IPEIAMNPAEFLLD-LATGQVTDISVPEALSASQGASDSEVLKYLQLK 377
+++ +FS LG PE NPA+F + LA ++ E + + +
Sbjct: 253 QAVPFFSDLGHPCPE-NYNPADFYVQVLAVIPGSENESRERIEKICDS-------FAVSD 304
Query: 378 YKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRERWRD-YFDK 436
+ + + + + + SWW QF+ + +R++ RD K
Sbjct: 305 IGRDMLVNTNLWSGKAGGLVKDSENM--EGIGYNASWWTQFYALLKRSWLSVLRDPLLLK 362
Query: 437 LRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIY 496
+RL+Q + A+++GL++ Q T+ +++ G +F T ++F + VF E
Sbjct: 363 VRLIQTMMTAILIGLIYLG-QGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPV 421
Query: 497 LVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILL 556
++E ++ +YR+S Y++ T+ ++ + P +F I Y+M G + F LF + L
Sbjct: 422 FLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTL 481
Query: 557 VAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLY 614
VA + G L A S A + ++ FLL GG+++ IP + +WL YLS+
Sbjct: 482 VANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFR 541
Query: 615 YGFRLLL-----KPRGCRNLQSSP---------------SFDTVNLSGGLQEVWVLLGMA 654
YG LL ++ SF +L ++ L+ +
Sbjct: 542 YGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLY---LDLIGLVILI 598
Query: 655 LAYRLCAYFCLRKRINK 671
+RL AYF LR RI +
Sbjct: 599 FFFRLLAYFALRIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 9e-73
Identities = 96/216 (44%), Positives = 131/216 (60%), Gaps = 39/216 (18%)
Query: 103 SLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIP- 160
S K K +LK ++G PGE+ A+MGPSG+GK+TLL + GR T V G + N P
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 161 YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
+ ++ IG+V QDD+L P LTV ETL+FAA LR
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------- 110
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
G+SGGERKR SI E++ +PSLL LDEPTSGLDS+SA +++ +L+++A
Sbjct: 111 ------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158
Query: 281 KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
GRT+I +IHQPSS +F +FDKLLL+S+G +Y+G
Sbjct: 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 3e-71
Identities = 95/212 (44%), Positives = 134/212 (63%), Gaps = 7/212 (3%)
Query: 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD--VKGNITYNDIPYNPAL 165
Y IL ++ + G+++A++G SGSGKTTLL + GR+ G I +N P P
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 166 -KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
++ + +V QDD+LLP LTV ETL + A LRLP + + RV+ ++ L T
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE----DVLLRDLALT 134
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
R+GG +KGISGGER+R SI ++L DP +L+LDEPTSGLDS +A L+ L ++A+ R
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
VI TIHQP S +F +FD++LL+S G VY G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 3e-68
Identities = 159/633 (25%), Positives = 281/633 (44%), Gaps = 74/633 (11%)
Query: 37 EFMSQAYLRNRYSEIDIVDESSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVS 96
EF ++A+++N ID S +P + + ++++ A+DS+ + +
Sbjct: 2 EFNAKAWVKNFRKLID-----SDPIYYKPYKLGVAYKNL----SAYGVAADSDYQPTFPN 52
Query: 97 ---KVAS------QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147
K+ + + D ILK + G I PGE+ ++G GSG +TLLK +
Sbjct: 53 ALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD 112
Query: 148 D---DVKGNITYNDIPYNPALKRRIGFV---TQDDVLLPQLTVEETLVFAAFLRLPGN-- 199
V+G ITY+ I K G V + DV P LTV ETL FAA + P N
Sbjct: 113 GFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRP 172
Query: 200 --MNRQQKYARV-QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256
++R++ + + + GL R+T+VG F++G+SGGERKR SI L +
Sbjct: 173 DGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232
Query: 257 LDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYY 315
D T GLDS +A + I+ L+ A T + I+Q S + +FDK++++ EGY +Y+
Sbjct: 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292
Query: 316 GKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASD------SE 369
G A ++ +YF +GF A+FL T ++ P G E
Sbjct: 293 GPADKAKQYFEKMGFKCPDRQTTADFL--------TSLTSPAERQIKPGYEKKVPRTPQE 344
Query: 370 VLKYL-------QLK-----YKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQ 417
Y QL Y + + +E +R + + + + +T+S+ Q
Sbjct: 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSK-RTRPSSPYTVSFSMQ 403
Query: 418 FHIISRRTFRERWRDYFDK----LRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFY 473
R F R + + + +A++L +++ T + + G +F+
Sbjct: 404 VKYCLARNF---LRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT-SDFYSRGGALFF 459
Query: 474 ICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVI 533
+F SS+ ++ I + K RK +Y S + S + ++ + +F +I
Sbjct: 460 AILFNAFSSLLEIASMYEARPI-VEKHRKYALYHPSADAIASIISEIPFKIIESVVFNII 518
Query: 534 VYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELF---GAAVLSIKRAGMIASLILMLFL 590
+YFM F+RT FF F +L++ I + LF GA ++ A A+++L+
Sbjct: 519 LYFMVNFRRTAGRFF---FYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALS 575
Query: 591 LTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLL 621
+ G+ + + + +W+ Y++ L Y F L+
Sbjct: 576 IYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 5e-67
Identities = 153/543 (28%), Positives = 263/543 (48%), Gaps = 52/543 (9%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV--KGNITYND 158
++ + K+ + IL + G + PG + ALMG SG+GKTTLL ++ R+T V G+ N
Sbjct: 768 EVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG 827
Query: 159 IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
P + + +R IG+V Q D+ LP TV E+L F+A+LR P ++++ +K V+ ++K L +
Sbjct: 828 RPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM 887
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL-LDEPTSGLDSTSANKLIQVLQ 277
E VG G++ +RKR +IG E++ P LLL LDEPTSGLDS +A + ++++
Sbjct: 888 ESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMR 946
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYY----GKARESM-EYFSSLGF-- 330
K+A G+ ++ TIHQPS+ +F FD+LLL+ +G Y G+ ++ YF G
Sbjct: 947 KLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPK 1006
Query: 331 IPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQLEPKE-KEE 389
PE A NPAE++L E + A+ GA ++ Y + ++ E + K E
Sbjct: 1007 CPEDA-NPAEWML-------------EVIGAAPGAHANQ--DYHE-VWRNSSEYQAVKNE 1049
Query: 390 HHRNKKIPEHLQL--AIQVKKDWTLSWWDQFHIISRRTFRERWR--DY-FDKLRLVQALG 444
R + + + S W QF ++ RTF++ WR DY + K L +
Sbjct: 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLT--IF 1107
Query: 445 VAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPF---EKIYLVKER 501
A+ +G ++K ++ + L++Q+ +F + + Y+ PF +Y V+ER
Sbjct: 1108 AALFIGFTFFKVGTSLQG-LQNQMFAVFMATVLFNP---LIQQYLPPFVAQRDLYEVRER 1163
Query: 502 KADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTV-------PCFFLTLFAI 554
+ + + ++ ++ TIF I Y+ GF L
Sbjct: 1164 PSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLS 1223
Query: 555 LLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYV--QHIPKFMQWLKYLSF 612
+ + G++ + + A ++ASL+ + L G +P F ++ S
Sbjct: 1224 TMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSP 1283
Query: 613 LYY 615
Y
Sbjct: 1284 FTY 1286
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 2e-57
Identities = 166/627 (26%), Positives = 297/627 (47%), Gaps = 64/627 (10%)
Query: 6 EEEIEDMSSLTPSTMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSSIEKDRP 65
EE E+M S S+ A G+N +I+ MS ++ + ++ ++ + R
Sbjct: 800 EETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRD-SSLEAANGVAPKRG 858
Query: 66 L-----PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSIC 120
+ P+ + F+DV Y V + + + +D +L+ +TG+
Sbjct: 859 MVLPFTPLAMSFDDVNYFVDMPAEMKEQ--------------GVTEDRLQLLREVTGAFR 904
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPYNPALKRRI-GFVTQDDVL 178
PG + ALMG SG+GKTTL+ ++ GR T ++G+I + P RI G+ Q+D+
Sbjct: 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIH 964
Query: 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE 238
PQ+TV E+L+++AFLRLP +++++K V +++ + L+ + VG + G+S +
Sbjct: 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298
RKR +I E++ +PS++ +DEPTSGLD+ +A +++ ++ GRTV+ TIHQPS +F
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1084
Query: 299 HMFDKLLLISEGYPVYYGK--ARES---MEYFSSLGFIPEIA--MNPAEFLLDLATGQVT 351
FD+LLL+ G V Y R S +EYF ++ +P+I NPA ++L++
Sbjct: 1085 EAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEV------ 1138
Query: 352 DISVPEALSASQGASDSEVLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKKD-- 409
S + ++L K + RNK + + L D
Sbjct: 1139 ----------------SSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLY 1182
Query: 410 ----WTLSWWDQFHIISRRTFRERWR--DYFDKLRLVQALGVAVVLGLLWWK--SQSTTE 461
++ S W QF + + WR DY + +R L A+++G ++WK ++ +
Sbjct: 1183 FATQYSQSTWGQFKSCLWKQWWTYWRSPDY-NLVRFFFTLAAALMVGTIFWKVGTKRSNA 1241
Query: 462 AQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMV 521
L +G ++ +F ++ + E+ +ER A MY Y + +C++
Sbjct: 1242 NDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIP 1301
Query: 522 AHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMI 581
+ T + +IVY M F+ T FF F + G + + + + A +
Sbjct: 1302 YVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIF 1361
Query: 582 ASLILMLFLLTGGYYVQH--IPKFMQW 606
A+ LF L G+++ IPK+ W
Sbjct: 1362 AAAFYGLFNLFSGFFIPRPKIPKWWVW 1388
|
Length = 1470 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 3e-57
Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 14/230 (6%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--- 162
K L G++ + PGEI L+GP+G+GKTTLLKI+ G L G I
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-SGEILVLGYDVVKEP 73
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
++RRIG+V Q+ L P+LTV E L F A L ++ R++ +L+ GLE
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKA 130
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ +V + +SGG ++R SI +L DP LL+LDEPTSGLD S ++ ++L+++AK
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 283 G-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFI 331
G T++ + H + D+++++++G + G E E F G I
Sbjct: 186 GGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVI 234
|
Length = 293 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 9e-57
Identities = 82/213 (38%), Positives = 115/213 (53%), Gaps = 39/213 (18%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPA 164
+ +L I+G + PG + ALMG SG+GKTTLL ++ GR T + G I N P +
Sbjct: 17 GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN 76
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+R G+V Q DV P LTV E L F+A LR
Sbjct: 77 FQRSTGYVEQQDVHSPNLTVREALRFSALLR----------------------------- 107
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
G+S +RKR +IG E+ PS+L LDEPTSGLDS +A +++ L+K+A +G+
Sbjct: 108 --------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ 159
Query: 285 TVITTIHQPSSRMFHMFDKLLLISE-GYPVYYG 316
++ TIHQPS+ +F FD+LLL+ G VY+G
Sbjct: 160 AILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 6e-48
Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 37/212 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK--GNITYNDIPYNPAL--- 165
ILK +G + PGE++ ++G GSG +TLLK + R +V G+I YN IPY
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
I +V+++DV P LTV ETL FA RC+
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDFAL---------------------------RCK--- 111
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GR 284
G F++GISGGERKR SI ++ S+L D T GLDS++A ++++ ++ +A
Sbjct: 112 -GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
T +++Q S ++ +FDK+L++ EG +YYG
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 4e-41
Identities = 154/575 (26%), Positives = 264/575 (45%), Gaps = 101/575 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNPALKRR 168
ILK +G I P + L+GP SGKTTLL + G+L V G ITYN N + R+
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 169 I-GFVTQDDVLLPQLTVEETLVFAAFLR-------LPGNMNRQQKYARV----------- 209
+++Q+DV + +TV+ETL F+A + L + R++K A +
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 210 -------------QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS-LL 255
LK LGL+ C+ T VG I+GISGG++KR + G E++V P+ L
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKTL 358
Query: 256 LLDEPTSGLDSTSANKLIQVLQKVAKAGR-TVITTIHQPSSRMFHMFDKLLLISEGYPVY 314
+DE ++GLDS++ ++++ LQ++ TV+ ++ QP+ F +FD ++L+SEG VY
Sbjct: 359 FMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418
Query: 315 YGKARESMEYFSSLGF-IPEIAMNPAEFLLDLATGQVTD------------ISVPEALSA 361
G +E+F S GF PE A+FL ++ + + + ISV E
Sbjct: 419 QGPRDHILEFFESCGFKCPE-RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAE- 476
Query: 362 SQGASDSEVLKYLQLKYKTQLE-----PKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWD 416
++ QLE P +K + H+ + + K + + WD
Sbjct: 477 ----------RFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP---KMELLKACWD 523
Query: 417 QFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQV---GLIFY 473
+ ++ +R + + VQ + VA + ++ +++ T + + L+F
Sbjct: 524 KEWLLMKRN------AFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577
Query: 474 ICI-----FWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPT 528
+ I F + + + VF K+R + + + + L + +
Sbjct: 578 MIINMFNGFAELALMIQRLPVF-------YKQRDLLFHPPWTFTLPTFLLGIPISIIESV 630
Query: 529 IFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIA----SL 584
+++VI Y+ GF FF L LLV + Q A +F + S+ R +IA +L
Sbjct: 631 VWVVITYYSIGFAPEASRFFKQL---LLVFLIQQMAAGIF-RLIASVCRTMIIANTGGAL 686
Query: 585 ILMLFLLTGGYYV--QHIPKFMQWLKYLSFLYYGF 617
+L+L L GG+ + IP + +W ++S L YGF
Sbjct: 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721
|
Length = 1470 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-39
Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNP 163
K K + ++ ++ GEI L+G +G+GKTT LK++ G L G N I +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSIRTDR 70
Query: 164 -ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
A ++ +G+ Q D L +LTV E L F + RL G + + + V+++L+ LGL
Sbjct: 71 KAARQSLGYCPQFDALFDELTVREHLRF--YARLKG-LPKSEIKEEVELLLRVLGLTDKA 127
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ R + +SGG +++ S+ ++ PS+LLLDEPTSGLD S + ++ +V +
Sbjct: 128 NKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RK 181
Query: 283 GRTVITTIH 291
GR++I T H
Sbjct: 182 GRSIILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-38
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 15/212 (7%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
L K Y L ++ ++ PGE LAL+GPSG GKTTLL+++ G D G I + D+
Sbjct: 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDV 64
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
P +R IG V QD L P LTV E + F L+L + + + ARV+ +L+ +GLE
Sbjct: 65 TGVPPERRNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLE 121
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ +SGG+++R ++ + +PSLLLLDEP S LD+ +L + L+++
Sbjct: 122 GLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176
Query: 280 -AKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+ G T I H + + D++ +++EG
Sbjct: 177 QRELGITTIYVTHDQEEALA-LADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-38
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 8/209 (3%)
Query: 417 QFHIISRRTFRERWRD--YFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYI 474
Q + +R F RWRD RL+Q L +A+V G ++ ++ R GL+F+
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNR--PGLLFFS 59
Query: 475 CIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIV 534
+F SS+ G VF E+ L +E + +Y S Y + L ++ + IF++IV
Sbjct: 60 ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119
Query: 535 YFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGG 594
YFM G V FFL L +LL A+ + G G A S + A I L+L+ LL G
Sbjct: 120 YFMVGL--PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSG 177
Query: 595 YY--VQHIPKFMQWLKYLSFLYYGFRLLL 621
++ V +P ++QW+ YL+ L Y L
Sbjct: 178 FFIPVDSMPGWLQWIYYLNPLTYAIEALR 206
|
Length = 210 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-38
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-- 163
+ LK + I GE +A++GPSGSGK+TLL ++GG G + N
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLS 73
Query: 164 ----ALKRR--IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
A RR IGFV Q+ LLP LTV E + + + ++ + +L+ LG
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLG 130
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE + +SGG+++R +I ++ +P ++L DEPT LDS +A +++++L+
Sbjct: 131 LEDRLLKK----KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186
Query: 278 KVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEG 310
++ K G+T+I H P + D+++ + +G
Sbjct: 187 ELNKERGKTIIMVTHDP--ELAKYADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 7e-38
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 21/214 (9%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP- 163
+ L I+ +I GE + ++GP+GSGK+TLL+++ G L G + +
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVLVDGKDLTKL 68
Query: 164 ---ALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQK--YARVQMILKELG 217
L+R++G V Q+ D TVEE + F N+ ++ RV+ L+ +G
Sbjct: 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG-----LENLGLPEEEIEERVEEALELVG 123
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILV-DPSLLLLDEPTSGLDSTSANKLIQVL 276
LE R +SGG+++R +I +L DP +LLLDEPT+GLD +L+++L
Sbjct: 124 LEGLRDRS-----PFTLSGGQKQRVAIA-GVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+K+ G+T+I H + + D+++++ +G
Sbjct: 178 KKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 8e-37
Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP-YNPALKR 167
LKG++ SI GE +A++GPSGSGK+TLL I+GG G + + + K
Sbjct: 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKE 75
Query: 168 R-------IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
IGFV Q LLP LT E + L G ++++ R + +L+ +GL
Sbjct: 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA--GVPKKERR-ERAEELLERVGLGD 132
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+ +SGG+++R +I + DP ++L DEPT LDS + +++++L+++
Sbjct: 133 RLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187
Query: 281 K-AGRTVITTIHQPSSRMFHMFDKLLLISEG 310
K AG T++ H P + D+++ + +G
Sbjct: 188 KEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-35
Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 29/270 (10%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
+ K + +LK + I GE + L+GPSG GK+TLL+++ G L + G I +
Sbjct: 9 VRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDV 67
Query: 162 N--PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
P KR I V Q+ L P +TV E + F L+L G + + + RV+ + K LGLE
Sbjct: 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRG-VPKAEIDKRVKEVAKLLGLE 124
Query: 220 ----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
R +SGG+R+R ++ ++ P + LLDEP S LD+ +
Sbjct: 125 HLLNRK---------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175
Query: 276 LQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL---GFI 331
++K+ + G T I H M + D+++++++G G E E ++L GFI
Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMT-LADRIVVMNDGRIQQVGTPLELYERPANLFVAGFI 234
Query: 332 PEIAMNPAEFLLDLATGQVTDISVPEALSA 361
MN FL +S+PE
Sbjct: 235 GSPPMN---FLKAEVKADGNGLSIPEDKKV 261
|
Length = 338 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-34
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--------PALKRRIGF 171
E+ + G SG+GK+TLL+ + G D G I N P +R+IG
Sbjct: 21 LNEEVTGIFGASGAGKSTLLRCIAGLEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79
Query: 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFI 231
V Q L P L V E L F L NR+ + V +L LGL+ + +
Sbjct: 80 VFQQYALFPHLNVRENLAFG----LKRKRNREDRI-SVDELLDLLGLDH-----LLNRYP 129
Query: 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTI 290
+SGGE++R ++ + P LLLLDEP S LD +L+ L+++ K VI
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 291 HQPSSRMFHMFDKLLLISEGYPVYYG 316
H S ++ D+++++ +G Y G
Sbjct: 190 HDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKR 167
L+ I+ S+ GE +AL+GPSG GK+TLL+I+ G G + + P
Sbjct: 16 AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTGP-GP 73
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
G+V Q D LLP LTV + + L L G + + + R + +L+ +GL +
Sbjct: 74 DRGYVFQQDALLPWLTVLDNVALG--LELQG-VPKAEARERAEELLELVGLSGFENA--- 127
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAGRTV 286
+ +SGG R+R ++ + VDP +LLLDEP S LD+ + +L + L + + G+TV
Sbjct: 128 --YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV 185
Query: 287 I 287
+
Sbjct: 186 L 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-33
Identities = 67/211 (31%), Positives = 118/211 (55%), Gaps = 15/211 (7%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNP-AL 165
K L G++ ++ PG + L+GP+G+GKTTL++I+ LT G I + D+ P L
Sbjct: 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPSSGTIRIDGQDVLKQPQKL 70
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
+RRIG++ Q+ + P TV E L + A+L+ G +++ K ARV +L+ + L +
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVK-ARVDEVLELVNLGDRAKKK 127
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+G +SGG R+R I ++ DPS+L++DEPT+GLD + +L ++ R
Sbjct: 128 IGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRI 181
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
VI + H + +++ ++++G V+ G
Sbjct: 182 VILSTHIVEDVES-LCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 6e-33
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 12/185 (6%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNP-ALK 166
+ G++ ++ PGE+ L+GP+G+GKTT L+++ G L D G T + D+ P +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEAR 77
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
RR+GFV+ L +LT E L + F L G + + AR++ + LG+E RV
Sbjct: 78 RRLGFVSDSTGLYDRLTARENLEY--FAGLYG-LKGDELTARLEELADRLGMEELLDRRV 134
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
GG S G R++ +I ++ DP +LLLDEPT+GLD + L + ++++ G+ +
Sbjct: 135 GG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189
Query: 287 ITTIH 291
+ + H
Sbjct: 190 LFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 8e-33
Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L++ + +L+ I+ S+ GEI AL+GP+G+GK+TLLK + G L G I P
Sbjct: 10 LTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS-SGEIKIFGKPV 68
Query: 162 NPALKR-RIGFVTQD---DVLLPQLTVEETLVFAAFLRLP--GNMNRQQKYARVQMILKE 215
KR RIG+V Q D P +TV++ ++ + + +N++ K +V L+
Sbjct: 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDK-EKVDEALER 126
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+G+E R ++G +SGG+++R + + +P LLLLDEP +G+D ++ +
Sbjct: 127 VGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307
L+++ + G+TV+ H + FD+++ +
Sbjct: 182 LKELRQEGKTVLMVTHDLGL-VMAYFDRVICL 212
|
Length = 254 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-32
Identities = 73/193 (37%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------- 162
L ++ I GE L L GPSG+GKTTLLK++ G LT +G + N
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGRQL 74
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQ-QKYARVQMILKELGLERC 221
P L+RRIG V QD LLP TV E + L + G R+ Q+ RV L+++GLE
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGKKEREIQR--RVGAALRQVGLEHK 130
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
F + +SGGE++R +I I+ P LLL DEPT LD + +++ +L+++ K
Sbjct: 131 ADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 282 AGRTVITTIHQPS 294
G TVI H S
Sbjct: 186 RGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 19/217 (8%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K + + +LKG+ + GEILA++GPSGSGK+TLL+++ G L D G + +
Sbjct: 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SGEVLIDGEDI 64
Query: 162 NP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
+ L+RR+G + Q L LTV E + F LR ++ ++ V L+
Sbjct: 65 SGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLE 122
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+GL +SGG +KR ++ + +DP LLL DEPT+GLD ++ +
Sbjct: 123 AVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD 177
Query: 275 VLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEG 310
+++ + K G T I H + F + D++ ++ +G
Sbjct: 178 LIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 6e-32
Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 50/193 (25%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K Y K L I+ ++ GEI L+GP+G+GKTTL+KI+ G L D G I
Sbjct: 6 LSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDI 64
Query: 162 N---PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
+KRRIG++ ++ L LTV E L
Sbjct: 65 KKEPEEVKRRIGYLPEEPSLYENLTVRENLKL---------------------------- 96
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
SGG ++R ++ +L DP LL+LDEPTSGLD S + ++L++
Sbjct: 97 ----------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 279 VAKAGRTVITTIH 291
+ K G+T++ + H
Sbjct: 141 LKKEGKTILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 25/234 (10%)
Query: 104 LDKDY---KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
L K Y K LK ++ SI PGE +AL+GPSG+GK+TLL+ + G L + G++ +
Sbjct: 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPTSGSVLIDGTD 64
Query: 161 YN-------PALKRRIGFVTQDDVLLPQLTVEETLVFAA-----FLR-LPGNMNRQQKYA 207
N L+R+IG + Q L+ +L+V E ++ R L G +++K
Sbjct: 65 INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR 124
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
+ L+ +GL + R +SGG+++R +I ++ P L+L DEP + LD
Sbjct: 125 ALA-ALERVGLLDKAYQRAD-----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPA 178
Query: 268 SANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
S+ +++ +L+++ + G TVI ++HQ + D+++ + +G V+ G E
Sbjct: 179 SSRQVMDLLKRINREEGITVIVSLHQVDLAREY-ADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 53/216 (24%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
+ K Y K +L ++ +I GEI+AL+GPSGSGK+TLL+ + G L + G+I +
Sbjct: 6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDL 64
Query: 162 N------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
P L+RRIG V QD L P LTV E +
Sbjct: 65 TDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------- 99
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
G+SGG+++R ++ + +DP +LLLDEPTS LD + ++ +
Sbjct: 100 -----------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142
Query: 276 LQKV-AKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
L+ + A+ G TV+ H + D+++++ +G
Sbjct: 143 LKSLQAQLGITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-------PA 164
L GI SI GE + L+GPSG+GK+TLLK++ G I N + P
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPY 75
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQ-QKYARVQMILKELGLERCRH 223
L+R+IG V QD LLP V E + FA L + G R+ +K RV L+ +GL
Sbjct: 76 LRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRK--RVPAALELVGLSHKHR 131
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
+SGGE++R +I I+ P++L+ DEPT LD + +++ +L+K+ KAG
Sbjct: 132 A-----LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 284 RTVITTIH 291
TV+ H
Sbjct: 187 TTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-30
Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Query: 103 SLDKDYKHILKG---ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT---Y 156
L K Y ++ ++ GEI L+G +G+GKTTLL+++ L D G +T
Sbjct: 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGV 64
Query: 157 NDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
+ + ++R+IG + + L +LT E L + F RL G ++R++ AR+ + K L
Sbjct: 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENLKY--FARLNG-LSRKEIKARIAELSKRL 121
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L RVG S G +++ +I ++ DPS+L+LDEPTSGLD + K +
Sbjct: 122 QLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAM 336
+++ GR VI + H + + D+++++ +G V G + E+++ + L + EI
Sbjct: 177 KQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG-SIEALDARTVLRNLEEIFA 234
Query: 337 NPAEFLLDLATG 348
F L L G
Sbjct: 235 ----FALKLEEG 242
|
Length = 245 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-30
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 65/206 (31%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY----NPA 164
+ L ++ ++ GEI+AL+GP+GSGK+TLL+ + G L G I +
Sbjct: 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEE 70
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
L+RRIG+V PQL
Sbjct: 71 LRRRIGYV-------PQL------------------------------------------ 81
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
SGG+R+R ++ +L++P LLLLDEPTSGLD S +L+++L+++A+ GR
Sbjct: 82 ----------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEG 310
TVI H P D+++++ +G
Sbjct: 132 TVIIVTHDPEL-AELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 17/215 (7%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
L++ +L+ ++ + PGE LA++GP+G+GK+TLLK + G L G+I
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFG 60
Query: 159 IPYNPALKR-RIGFVTQD---DVLLPQLTVEET--LVFAAFLRLPGNMNRQQKYARVQMI 212
P +R RIG+V Q D P ++V + + L +++ K A+V
Sbjct: 61 KP--LEKERKRIGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADK-AKVDEA 116
Query: 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
L+ +GL + I +SGG+++R + ++ DP LLLLDEP +G+D + +
Sbjct: 117 LERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171
Query: 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307
++L+++ + G T++ H + + FD++LL+
Sbjct: 172 YELLRELRREGMTILVVTHDLGLVLEY-FDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-30
Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 21/275 (7%)
Query: 103 SLDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
++ K + + I+ I GE + L+GPSG GKTTLL+++ G G I +
Sbjct: 10 NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGED 68
Query: 161 YN--PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
P KR IG V Q L P +TVEE + F L++ + + + ARV+ L+ +GL
Sbjct: 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGL 126
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS---TSANKLIQV 275
E + +SGG+++R ++ ++ +P +LLLDEP S LD+ K ++
Sbjct: 127 EGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE 181
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL---GFIP 332
LQ+ + G T + H + M D++ ++++G G E E ++ FI
Sbjct: 182 LQR--ELGITFVYVTHDQEEAL-AMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG 238
Query: 333 EIAMNPAEFLLDLATGQVTDISVPEALSASQGASD 367
E + + + L + +
Sbjct: 239 ESNIFEGKVVERLGAIGGAVGGLGVVAPGAIPEGG 273
|
Length = 352 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 19/194 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNPAL 165
K IL + +I G++ A++G SGSGK+TLL I+G L G + N P N
Sbjct: 11 KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL-LEKFDSGQVYLNGQETPPLNSKK 69
Query: 166 KR-----RIGFVTQDDVLLPQLTVEETLVFA-AFLRLPGNMNRQQKYARVQMILKELGLE 219
++G++ Q+ L+ TVEE L + +L R++K L+++GL
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE----ALEKVGLN 125
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ I +SGGE++R ++ IL P L+L DEPT LD + ++++ +L ++
Sbjct: 126 LKLKQK-----IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 280 AKAGRTVITTIHQP 293
G+T+I H P
Sbjct: 181 NDEGKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 7e-30
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
+S +L+ I S+ GE +A++GPSG GK+TLL+++ G L G + +
Sbjct: 6 IEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDG 64
Query: 159 IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
P IG+V Q+D LLP LTV + + L L G ++ + R + +L+ +GL
Sbjct: 65 RPVT-GPGPDIGYVFQEDALLPWLTVLDNVALG--LELRG-KSKAEARERAKELLELVGL 120
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-IQVLQ 277
+SGG R+R +I + P LLLLDEP LD+ + +L ++L+
Sbjct: 121 AGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175
Query: 278 KVAKAGRTVI 287
+ +TV+
Sbjct: 176 LWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 7e-30
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 19/231 (8%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
LS K IL ++ SI GEI ++GP+GSGK+TLLK + G L G + +
Sbjct: 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKD 65
Query: 161 ---YNPA-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN-MNRQQKYARVQMILKE 215
+P L +++ +V Q LTV E ++ + L ++ V+ L+
Sbjct: 66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALEL 125
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
LGLE + +SGGER+R I + + +LLLDEPTS LD +++++
Sbjct: 126 LGLEHLADRP-----VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 276 LQKVAK-AGRTVITTIHQPSSRMFHMF---DKLLLISEGYPVYYGKARESM 322
L+ + + G TV+ +H + D L+L+ +G V G E +
Sbjct: 181 LRDLNREKGLTVVMVLHDLN----LAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-30
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK-----GNITY-----ND 158
KH LK I+ I GEI AL+GPSG GK+TLL+++ RL D + G + D
Sbjct: 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLL-NRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 159 IPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
+ + L+RR+G V Q P ++ + + + LRL G +++ RV+ L++
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYG--LRLHGIKLKEELDERVEEALRKAA 128
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
L R+ G+SGG+++R + + +P +LLLDEPTS LD S K+ +++
Sbjct: 129 LWDEVKDRLHAL---GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA 185
Query: 278 KVAKAGRTVITT 289
++ K VI T
Sbjct: 186 ELKKEYTIVIVT 197
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNP----- 163
IL G+ + GEILA++G SGSGK+TLL+++ G L D KG I + DIP
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEEELY 81
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
+++R+G + Q L LTV E + F LR + V M L+ +GL
Sbjct: 82 EIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMKLELVGL----R 135
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA- 282
+ +SGG RKR ++ I +DP LL LDEPTSGLD SA + ++++++ A
Sbjct: 136 GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL 195
Query: 283 GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
G TVI H S + + D++ ++++G + G E
Sbjct: 196 GLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-29
Identities = 67/197 (34%), Positives = 95/197 (48%), Gaps = 14/197 (7%)
Query: 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYN 157
+SL +L + +I GEI+ LMGPSG GK+TLL + G L G + N
Sbjct: 6 KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65
Query: 158 DIPYN--PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
+ + PA +R+IG + QD +L P L+V + L+FA L GN R A L+
Sbjct: 66 EQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA----ALER 121
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ- 274
GL+ H +SGG+R R ++ +L P LLLDEP S LD ++ Q
Sbjct: 122 SGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 275 VLQKVAKAGRTVITTIH 291
V +V AG + H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-29
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 16/223 (7%)
Query: 103 SLDKDYKHI-LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
+L KD+K LK ++ + G+ ++GP+GSGK+ LL+ + G + D G I N DI
Sbjct: 5 NLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDI 63
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
P KR I +V Q+ L P +TV + + + R +++++ +V I + LG++
Sbjct: 64 TNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGID 120
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ + + +SGGE++R +I ++V+P +LLLDEP S LD + KL + L+K+
Sbjct: 121 HLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175
Query: 280 AKA-GRTVITTIH-QPSSRMFHMFDKLLLISEGYPVYYGKARE 320
K G TV+ H + + DK+ ++ G + GK E
Sbjct: 176 RKEFGVTVLHVTHDFEEAWA--LADKVAIMLNGKLIQVGKPEE 216
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 9e-29
Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 18/191 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------ 162
+ L+ ++ I GE + L GPSG+GK+TLLK++ G +G I N +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKGRE 73
Query: 163 -PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ER 220
P L+R+IG V QD LLP TV E + LR+ G ++ RV +L +GL +
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRVIG-KPPREIRRRVSEVLDLVGLKHK 130
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
R +SGGE++R +I I+ P++LL DEPT LD + +++++ +++
Sbjct: 131 ARA------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 281 KAGRTVITTIH 291
+ G TV+ H
Sbjct: 185 RLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 68/216 (31%), Positives = 122/216 (56%), Gaps = 18/216 (8%)
Query: 106 KDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP 163
K + L I+ S+ GEI L+GP+G+GKTT ++++ G + D G + ++ P +
Sbjct: 8 KRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDI 66
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
A + RIG++ ++ L P++ V + LV+ A L+ + +++ R+ L+ L L +
Sbjct: 67 AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYAN 123
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
RV + +S G +++ ++ DP LL+LDEP SGLD + L V++++A+AG
Sbjct: 124 KRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 284 RTVITTIHQPSSRMFH---MFDKLLLISEGYPVYYG 316
+TVI + HQ M + D++LL+++G V YG
Sbjct: 179 KTVILSTHQ----MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 23/187 (12%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITYN--DIPYNPA-- 164
IL G++ ++ GEI+AL+G +G+GKTTLLK I+G L G+I ++ DI P
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG--LLPPRSGSIRFDGRDITGLPPHE 71
Query: 165 -LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV-QM--ILKELGLER 220
+ IG+V + + P+LTVEE L+ A+ R R+ + RV ++ LKE
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA--KRKARLERVYELFPRLKER---- 125
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
R G +SGGE++ +I ++ P LLLLDEP+ GL ++ + ++++
Sbjct: 126 -RKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 281 KAGRTVI 287
G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-28
Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 14/218 (6%)
Query: 94 VVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153
VS ++ LS + + L+ ++ +I GE++ ++GPSG GKTTLL ++ G +G+
Sbjct: 5 NVSHLS--LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTPSRGS 61
Query: 154 ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213
I N R G V Q++ LLP L V + + F L+L G + + Q+ +L
Sbjct: 62 IQLNGRRIEGPGAER-GVVFQNEALLPWLNVIDNVAFG--LQLRG-IEKAQRREIAHQML 117
Query: 214 KELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
+GLE H +I +SGG R+R I + V+P LLLLDEP LD+ + ++
Sbjct: 118 ALVGLEGAEHK-----YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172
Query: 274 QVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEG 310
++L + + G+ V+ H +F + +L+++S G
Sbjct: 173 ELLLDLWQETGKQVLLITHDIEEALF-LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 110 bits (279), Expect = 3e-28
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 54/206 (26%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA- 164
K +LK ++ +I PGE +A++GPSGSGK+TLLK++ RL D G I + + +
Sbjct: 15 KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL-LRLYDPTSGEILIDGVDLRDLDLES 73
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
L++ I +V QD L T+ E N IL
Sbjct: 74 LRKNIAYVPQDPFLFSG-TIRE------------N------------IL----------- 97
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
SGG+R+R +I +L DP +L+LDE TS LD + +++ L+ +AK G+
Sbjct: 98 ----------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEG 310
TVI H+ S+ D+++++ +G
Sbjct: 147 TVIVIAHRLST--IRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 5e-28
Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 18/211 (8%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA---- 164
K +L I I PGEI+ L GPSGSGKTTLL ++GG L +G++ A
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG-LRSVQEGSLKVLGQELYGASEKE 76
Query: 165 ---LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
L+R IG++ Q LL LT + + A L L N++ Q+ R + +L+ +GL
Sbjct: 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLGDH 134
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+ +SGG+++R +I ++ P L+L DEPT+ LDS S +++++QK+A+
Sbjct: 135 LDY-----YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 282 -AGRTVITTIHQPSSRMFHMFDKLLLISEGY 311
G T++ H R+ + D+++ + +G
Sbjct: 190 EQGCTILIVTHDN--RILDVADRIVHMEDGK 218
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-28
Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-----DIPYNPALK 166
L I+ I GE++AL+GPSG+GK+TLL+I+ G T D G I N D+
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAVRD 76
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
R++GFV Q L P +TV + + F +R + + ARV+ +L+ + LE +
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLE-----GL 130
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAGRT 285
+ +SGG+R+R ++ + V+P +LLLDEP LD+ +L + L+K+ + G T
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ H + D+++++++G G E
Sbjct: 191 TVFVTHDQEEALEL-ADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 20/191 (10%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI----PYNP 163
L ++ S+ PGEI L+GP+G+GKTTL ++ G L G++ ++ DI P+
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEI 72
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN-------RQQKYARVQMILKEL 216
A + IG Q L P+LTV E ++ AA R + ++ R + +L+ +
Sbjct: 73 A-RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GL G +S G+++R I + DP LLLLDEP +GL+ +L +++
Sbjct: 132 GLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 277 QKVAKAGRTVI 287
+++ + G TV+
Sbjct: 187 RELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 25/234 (10%)
Query: 104 LDKDY---KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
L K Y K LK I +I PGE +A++GPSG+GK+TLL+ + RL + G+I
Sbjct: 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSSGSILLEGTD 65
Query: 161 YNPA-------LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-----NMNRQQKYAR 208
L+RRIG + Q L+ +LTV E ++ P ++ R
Sbjct: 66 ITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKER 125
Query: 209 VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268
L+ +GL + R +SGG+++R +I + P L+L DEP + LD +
Sbjct: 126 ALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT 180
Query: 269 ANKLIQVLQKVAKA-GRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGKARE 320
+ +++ L+++ K G TVI +HQ ++ + D+++ + G V+ G E
Sbjct: 181 SKQVMDYLKRINKEDGITVIINLHQVDLAKKYA--DRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 25/207 (12%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
K IL ++ + GEI+AL G +G+GKTTL KI+ G L + G+I N P
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKE 68
Query: 166 KRR-IGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-- 221
+R+ IG+V QD D L +V E L L G + + +LK+L L
Sbjct: 69 RRKSIGYVMQDVDYQLFTDSVREEL-------LLGLKELDAGNEQAETVLKDLDLYALKE 121
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
RH +SGG+++R +I +L LL+ DEPTSGLD + ++ ++++++A
Sbjct: 122 RHPL-------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 282 AGRTVITTIHQP------SSRMFHMFD 302
G+ VI H R+ + +
Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLAN 201
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K + H+LKGI ++ GE++ ++GPSGSGK+TLL+ + L + G I + +
Sbjct: 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPDSGTIIIDGLKL 64
Query: 162 N------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
L++++G V Q L P LTV E + A M++ + R +L++
Sbjct: 65 TDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA--PIKVKGMSKAEAEERALELLEK 122
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+GL + +SGG+++R +I + ++P ++L DEPTS LD +++ V
Sbjct: 123 VGLADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 276 LQKVAKAGRTVITTIHQ 292
++ +A+ G T++ H+
Sbjct: 178 MKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 67/212 (31%), Positives = 117/212 (55%), Gaps = 16/212 (7%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K + I+ + PGEI L+GP+G+GKTT +++ G L +G IT+N P + +K R
Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQEIKNR 73
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
IG++ ++ L P++TVE+ L + A L+ M + + ++Q L+ L + + +
Sbjct: 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK--- 127
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT 288
IK +S G +++ ++ +P LL+LDEP SGLD + L + ++ + G T+I
Sbjct: 128 --IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185
Query: 289 TIHQPSSRMFH---MFDKLLLISEGYPVYYGK 317
+ H RM H + D+LL++ +G V YG
Sbjct: 186 SSH----RMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 25/223 (11%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA---- 164
K LK ++ I GE + L+GP+GSGK+TLLK++ G L G + + + +
Sbjct: 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEKSLL 75
Query: 165 -LKRRIGFVTQD-DVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELGLERC 221
L++++G V Q+ D L TVE+ + F L LP R++ RV L+ +GLE
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP----REEIEERVAEALELVGLEEL 131
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+SGG+++R +I + + P +LLLDEPT+GLD +L+++L+K+ +
Sbjct: 132 LDRP-----PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE 186
Query: 282 A-GRTVITTIHQPSSRMFHMF---DKLLLISEGYPVYYGKARE 320
G+T+I H + + D+++++ +G + G E
Sbjct: 187 EGGKTIIIVTH----DLELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 23/237 (9%)
Query: 104 LDKDYK------HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN 157
L Y H L ++ I GE L ++G SGSGK+TL +++ G L G+I +
Sbjct: 9 LSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG-LEKPSSGSILLD 67
Query: 158 DIPYNP-----ALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
P P A R + V QD L P+ TV L LR G QQ R+
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP--LRPHGLSKSQQ---RIA 122
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+L ++GL R +SGG+R+R +I ++ +P LL+LDEPTS LD +
Sbjct: 123 ELLDQVGLPPSFLDR----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 271 KLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327
+++ +L ++ K I + + HM D++ ++ G V G E + + S
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 59/190 (31%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----P 163
K +LKGI+ S+ GE++ ++GPSGSGK+TLL+ + G L + G+IT +
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDIL 73
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ERCR 222
L+R++G V Q L P LTV E + A +++ + + +L+++GL ++
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLA--PVKVKKLSKAEAREKALELLEKVGLADKAD 131
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ +SGG+++R +I + +DP ++L DEPTS LD +++ V++ +A+
Sbjct: 132 A------YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 283 GRTVITTIHQ 292
G T+I H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 106 KDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN- 162
K Y L G++ I GE L+GPSG GKTTLL+++ G T G I +
Sbjct: 8 KFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITN 66
Query: 163 -PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
P KR + V Q+ L P LTV E + F LRL + + + RV L + LE
Sbjct: 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFG--LRLKK-LPKAEIKERVAEALDLVQLEGY 123
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ + +SGG+++R +I ++ +P +LLLDEP LD
Sbjct: 124 ANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 31/242 (12%)
Query: 104 LDKDY---KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
L K Y LK + I GE++A++GPSG+GK+TLL+ + G L D G I +N +
Sbjct: 9 LSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQ 67
Query: 161 YNPA-------LKRRIGFVTQDDVLLPQLTVEETL---------VFAAFLRLPGNMNRQQ 204
L+R IG + Q L+P+L+V E + + + L ++ Q
Sbjct: 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ 127
Query: 205 KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264
L+ +G+ + R +SGG+++R +I ++ P ++L DEP + L
Sbjct: 128 ALD----ALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
D SA K++ +L+ + + G TVI +HQ + D+++ + G V+ G A E +
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPASELTD 237
Query: 324 YF 325
Sbjct: 238 EA 239
|
Length = 258 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----A 164
L G++ ++ PGE+ AL+G +G+GK+TL+KI+ G D G I + P A
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVAFSSPRDA 80
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFL-RLP----GNMNRQQKYARVQMILKELGLE 219
L I V Q+ L+P L+V E + FL R P G ++R+ R + +L LGL+
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENI----FLGREPTRRFGLIDRKAMRRRARELLARLGLD 136
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
T VG +S +R+ I + D +L+LDEPT+ L +L +++++
Sbjct: 137 IDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
Query: 280 AKAGRTVI 287
G +I
Sbjct: 192 KAQGVAII 199
|
Length = 500 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 71/214 (33%), Positives = 114/214 (53%), Gaps = 14/214 (6%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
S L D K L+ I ++ GE+L ++GPSG GKTTLL ++ G + G+IT +
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDG 62
Query: 159 IPYN-PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
P P +R G V Q++ LLP V++ + F L+L G + + Q+ +LK++G
Sbjct: 63 KPVEGPGAER--GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVG 117
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE +I +SGG+R+R I + +P LLLLDEP LD+ + ++ +L
Sbjct: 118 LEGAEKR-----YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL 172
Query: 278 KV-AKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
K+ + G+ V+ H +F M +L+L+S G
Sbjct: 173 KLWQETGKQVLLITHDIEEAVF-MATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-26
Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 19/224 (8%)
Query: 106 KDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP--- 160
K Y + + + +I GE L L+GPSGSGKTT LK++ RL + G I +
Sbjct: 9 KRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-NRLIEPTSGEILIDGEDISD 67
Query: 161 YNPA-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
+P L+R+IG+V Q L P LTV E + +L G ++++ R +L +GL+
Sbjct: 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATV--PKLLG-WDKERIKKRADELLDLVGLD 124
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL---IQVL 276
+ + +SGG+++R + + DP +LL+DEP LD + +L I+ L
Sbjct: 125 P---SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
QK + G+T++ H + D++ ++ G V Y E
Sbjct: 182 QK--ELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDE 222
|
Length = 309 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 16/193 (8%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA 164
L ++ SI GE L L+G SGSGK+TL + + G L G+I ++
Sbjct: 14 GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLKPTSGSIIFDGKDLLKL 72
Query: 165 LK-------RRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
+ + I V QD L P++T+ E + ++ + V ++L
Sbjct: 73 SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA-EPLRIHGKLSKKEARKEAVLLLLVG 131
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+GL R + +SGG+R+R +I + ++P LL+ DEPTS LD + +++ +
Sbjct: 132 VGLPEEVLNR----YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL 187
Query: 276 LQKVAKA-GRTVI 287
L+K+ + G T++
Sbjct: 188 LKKLQEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 33/225 (14%)
Query: 103 SLDKDYKH------ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY 156
+L K Y+ +LKG++ SI GEI+A++G SGSGK+TLL ++GG L + G + +
Sbjct: 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPTSGEVLF 64
Query: 157 NDIPYNPALKRRI--------GFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR 208
N + GF+ Q LLP T E + L G + ++ R
Sbjct: 65 NGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL---LIGKKSVKEAKER 121
Query: 209 VQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
+L+++GLE R H R +SGGER+R +I ++ PSL+L DEPT LD+
Sbjct: 122 AYEMLEKVGLEHRINH-RPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 268 SANKLIQVLQKVAKAGRT--VITTIHQPS-----SRMFHMFDKLL 305
+A + ++ ++ + T ++ T H R+ M D L
Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVT-HDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 3e-25
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 49/223 (21%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
LS+ + +L ++ SI GEI+ ++GP+G+GK+TLLK + G L G I +
Sbjct: 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDG 60
Query: 159 IPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
L R+I +V Q L+
Sbjct: 61 KDLASLSPKELARKIAYVPQ-------------------------------------ALE 83
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
LGL +SGGER+R + + +P +LLLDEPTS LD +L++
Sbjct: 84 LLGLAHLADRPFN-----ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 275 VLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
+L+++A+ G+TV+ +H + D+++L+ +G V G
Sbjct: 139 LLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 14/218 (6%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALK 166
+LK ++ +I G+ +A++GPSGSGK+T+L+++ R D G+I + +L+
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVSSGSILIDGQDIREVTLDSLR 74
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE-LGLERCRHTR 225
R IG V QD VL T+ + + R + A+ I + + T
Sbjct: 75 RAIGVVPQDTVLFND-TIGYNIRYG---RPDATDEEVIEAAKAAQIHDKIMRFPDGYDTI 130
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
VG +K +SGGE++R +I IL +P +LLLDE TS LD+ + ++ L+ V+K GRT
Sbjct: 131 VGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRT 188
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
I H+ S+ + DK++++ +G V G E +
Sbjct: 189 TIVIAHRLSTIV--NADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 34/226 (15%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITYN--DI----PYN 162
L+G++ + GEI+AL+G +G+GKTTLLK I+G L G I ++ DI P+
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHE 74
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM--------ILK 214
A + I +V + + P+LTVEE L+ A+ R R ++ + LK
Sbjct: 75 RA-RLGIAYVPEGRRIFPRLTVEENLLLGAYAR------RDKEAQERDLEEVYELFPRLK 127
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
E R+ R G +SGGE++ +I ++ P LLLLDEP+ GL ++ +
Sbjct: 128 ER-----RNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177
Query: 275 VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
++++ K G I + Q + + D+ ++ G V G A E
Sbjct: 178 AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
|
Length = 237 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-25
Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K Y K +L I+ + GEI +GP+G+GKTT +KI+ G + D G IT++ Y
Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-GEITFDGKSY 64
Query: 162 --NPALKRRIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNMNRQQKYARVQMILKELGL 218
N RRIG + + P LT E L + A L + R+ +L +GL
Sbjct: 65 QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR--------KKRIDEVLDVVGL 116
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
+ +V KG S G ++R I +L +P LL+LDEPT+GLD +L +++
Sbjct: 117 KDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILS 171
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+ G TV+ + H S + + D++ +I++G
Sbjct: 172 LRDQGITVLISSHL-LSEIQKVADRIGIINKG 202
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 8e-25
Identities = 67/194 (34%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 104 LDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
+ K + LK I+ S+ GE + L+GPSG GKTTLL+I+ G L G I DI
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDI 68
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
P KR G V Q L P LTV + + + R M R + RV +L +GL
Sbjct: 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGL- 124
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL---IQVL 276
+ +SGG+++R ++ + P LLLLDEP S LD+ L I+ L
Sbjct: 125 ----PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 277 QKVAKAGRTVITTI 290
Q+ R +TTI
Sbjct: 181 QR-----RLGVTTI 189
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 9e-25
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 42/218 (19%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY---NPA-LKR 167
L ++ +I GE +A++G GSGK+TLLK++ G L G++ + +PA L+R
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL----------- 216
IG+V QD L F LR N+ A + IL+
Sbjct: 79 NIGYVPQDVTL-----------FYGTLR--DNITLGAPLADDERILRAAELAGVTDFVNK 125
Query: 217 ---GLERCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
GL+ ++G G G+SGG+R+ ++ +L DP +LLLDEPTS +D S +L
Sbjct: 126 HPNGLDL----QIGERGR--GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+ L+++ +T+I H+PS + + D+++++ G
Sbjct: 180 KERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 19/219 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKR 167
L + +I G++ AL+G SG+GK+TLL ++ G L +G I N I A ++
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLSPEAWRK 395
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM--ILKELGLERCRHTR 225
+I +V+Q+ L T+ E ++ A + + ++ A + +L+ + T
Sbjct: 396 QISWVSQNPYLFAG-TIRENILLAR-----PDASDEEIIAALDQAGLLEFVPKPDGLDTV 449
Query: 226 VG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
+G GG G+SGG+ +R ++ +L SLLLLDEPT+ LD+ + ++Q LQ++AK +
Sbjct: 450 IGEGG--AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QK 506
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
TV+ H+ D+++++ G V G E E
Sbjct: 507 TVLVITHRL-EDAADA-DRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 20/229 (8%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-----TDDVKGNIT 155
+S+ ++ K IL ++ + PGE A++GP+G+GKTTLL ++ G + G
Sbjct: 36 NVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRR- 94
Query: 156 YNDIPYNPALKRRIGFVT--QDDVLLPQLTVEETLV---FAAFLRLPGNMNRQQKYARVQ 210
+ L++RIG V+ + + TV + ++ FA+ ++ + A Q
Sbjct: 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED-LAAAQ 153
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+L+ LG + +S GE++R I ++ DP LL+LDEP GLD +
Sbjct: 154 WLLELLGA-----KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIARE 208
Query: 271 KLIQVLQKVA--KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317
+L+ L+++A ++ H + F LL+ EG V GK
Sbjct: 209 QLLNRLEELAASPGAPALLFVTHHAEE-IPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 12/183 (6%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYNDIPYNPA-LKRRI 169
+ G+ + GE+ +GP+G+GKTT ++++ L + D+ P ++R I
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68
Query: 170 GFVTQDDVLLPQLTVEETLV-FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
G V Q + LT E L LP + R + +L+ L VG
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAE----ERAEELLELFELGEAADRPVGT 124
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT 288
SGG R+R I ++ P +L LDEPT+GLD + + ++ + + G T++
Sbjct: 125 -----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 289 TIH 291
T H
Sbjct: 180 TTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-24
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 28/225 (12%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALK 166
+L+ ++ I PGE +A++G SGSGK+TLLK++ G +G I + + N +L+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QGRILLDGVDLNDIDLASLR 546
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI-----LKEL--GLE 219
R++G+V QD L ++ E + ++ Q+ ++ L G
Sbjct: 547 RQVGYVLQDPFLFSG-SIRENIALGNP-----EATDEEIIEAAQLAGAHEFIENLPMGY- 599
Query: 220 RCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
T VG GG +SGG+R+R ++ +L P +LLLDE TS LD + ++Q L +
Sbjct: 600 ---DTPVGEGGA--NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
GRTVI H+ S D+++++ +G V G E +
Sbjct: 655 -ILQGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 7e-24
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
++S K ILK I+ G I ++GPSG+GK+TL+K++ RL D +G+I + +
Sbjct: 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLIDPTEGSILIDGVD 66
Query: 161 YNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
L+R+IG V Q L + TV++ + + G M + +K V+ L +
Sbjct: 67 IKTIDVIDLRRKIGMVFQQPHLF-EGTVKDNIEY-------GPMLKGEKNVDVEYYLSIV 118
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN---KLI 273
GL + TR +K +SGGE +R SI + +P +LLLDEPTS LD TS +LI
Sbjct: 119 GLNKEYATRD----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 274 QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
L+ K TVI H + + D +++G V Y K +
Sbjct: 175 VKLKN--KMNLTVIWITHN-MEQAKRIGDYTAFLNKGILVEYAKTYD 218
|
Length = 241 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 9e-24
Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 28/227 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A 164
K +LK I SI PGE +A++GP+G+GKTTL+ ++ R D KG I + I +
Sbjct: 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL-MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------- 217
L+ IG V QD L T+ E +RL + V KE G
Sbjct: 75 LRSMIGVVLQDTFLFSG-TIMEN------IRLGRPNATDE---EVIEAAKEAGAHDFIMK 124
Query: 218 LERCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L T +G G +S GER+ +I +L DP +L+LDE TS +D+ + + + L
Sbjct: 125 LPNGYDTVLGENG--GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+K+ K GRT I H+ S+ DK+L++ +G + G E +
Sbjct: 183 EKLMK-GRTSIIIAHRLSTIKNA--DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 1e-23
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-------P 163
+L ++ SI GE++A++G SGSGK+TLL ++GG L G++ +N P +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTPTSGDVIFNGQPMSKLSSAAKA 82
Query: 164 ALK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
L+ +++GF+ Q LLP T E A L G + +R +L +GLE
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALEN---VAMPLLIGKKKPAEINSRALEMLAAVGLEHRA 139
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ R +SGGER+R +I ++ +P L+L DEPT LD+ +A+ + Q+L ++ +
Sbjct: 140 NHRPSE-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 283 GRT---VITTIHQPSSRM 297
T V+T Q + RM
Sbjct: 195 QGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 29/247 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-TDDVKGNITY--NDIPYNPALKR 167
+L ++ I GE+LAL+G SG GKTTLL+ + G + + G I D+ + P KR
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
+ + Q+ L P L VE+ + F + M + RV LK +GL
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGL-----GDAA 131
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR--- 284
+SGG ++R +I I ++P +LLLDEP S LD AN + +++A
Sbjct: 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD---ANIRANMREEIAALHEELP 188
Query: 285 --TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE---------SMEYFSSLGFIPE 333
T++ H + + DK ++ +G +G+ + + E+ + +P
Sbjct: 189 ELTILCVTHDQDDALT-LADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILPA 247
Query: 334 IAMNPAE 340
IA+ E
Sbjct: 248 IALGITE 254
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 35/287 (12%)
Query: 95 VSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
VSK Q L ++ I GEI ++G SG+GK+TLL+++ L G++
Sbjct: 7 VSKTFGQTG--TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSV 63
Query: 155 TYNDI---PYNPA----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA 207
+ + A L+++IG + Q LL TV E + F L L G + + +
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAG-VPKAEIKQ 120
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
RV +L+ +GL + +SGG+++R +I + +P +LL DE TS LD
Sbjct: 121 RVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 268 SANKLIQVLQKV-AKAGRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGKARESMEYF 325
+ ++++L+ + + G T++ H+ + D++ ++ +G V G E F
Sbjct: 176 TTQSILELLKDINRELGLTIVLITHEMEVVKRI--CDRVAVLDQGRLVEEGTVSEV---F 230
Query: 326 SSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLK 372
+ NP + G+ +I +PE L + D +L+
Sbjct: 231 A----------NPKHAITQEFIGETLEIDLPEELLERLESGDGPLLR 267
|
Length = 339 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-23
Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 34/219 (15%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI---PYNP 163
L ++ +I PGE +A++G GSGK+TLLK++ G L +G++ + + +P
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQPTEGSVLLDGVDIRQIDP 534
Query: 164 A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL---GLE 219
A L+R IG+V QD L T+ + + A YA + IL+ G+
Sbjct: 535 ADLRRNIGYVPQDPRLF-YGTLRDNIALGA------------PYADDEEILRAAELAGVT 581
Query: 220 RC--RH-----TRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
RH ++G G + +SGG+R+ ++ +L DP +LLLDEPTS +D+ S +
Sbjct: 582 EFVRRHPDGLDMQIGERG--RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER 639
Query: 272 LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
L++ AG+T++ H+ S + + D+++++ G
Sbjct: 640 FKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA--- 164
+ ++ + GE L L+G SGSGK+TL +I+ G L G+I ++ +
Sbjct: 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGE 361
Query: 165 -----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
+ ++ F L P++TV + L LR+ G + ++ ARV +L+ +GL
Sbjct: 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLP 419
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD-STSAN--KLIQVL 276
+ +SGG+R+R +I + ++P LL+LDEP S LD S A L++ L
Sbjct: 420 P----EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475
Query: 277 QK 278
Q+
Sbjct: 476 QE 477
|
Length = 539 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 2e-23
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 20/195 (10%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------- 162
ILKG+ + GE +A++GPSGSGK+TLL ++ G L D G + P +
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 163 PALK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ER 220
AL+ R +GFV Q L+P LT E + LR + A + +L+ +GL +R
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELR---GESSADSRAGAKALLEAVGLGKR 139
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL-QKV 279
H + +SGGE++R ++ P +L DEPT LD + +K+ +L
Sbjct: 140 LTH------YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193
Query: 280 AKAGRTVITTIHQPS 294
+ G T++ H P
Sbjct: 194 RERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 21/228 (9%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP- 160
++K Y K ++ G++ + GE L+GP+G+GKTT L+++ G D G+I+ P
Sbjct: 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA-GSISLCGEPV 71
Query: 161 --YNPALKRRIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNMNRQQKYARVQMILKELG 217
++R+G V Q D L P TV E L VF + L A V +L+
Sbjct: 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA----AAARALVPPLLEFAK 127
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE +VG +SGG ++R ++ ++ DP +L+LDEPT+GLD + + + + L+
Sbjct: 128 LENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182
Query: 278 KVAKAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+ G+T++ T H + + R+ +L +I EG + G +E
Sbjct: 183 SLLARGKTILLTTHFMEEAERLCD---RLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-23
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 19/201 (9%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLL-----------KIVGGRLTDDVKGN 153
D ++ ++ + PGEIL ++G SGSGK+TL +I G + D +
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDL 77
Query: 154 ITYNDIPYNPALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211
+ ++ +RI + QD L P +T+ + LRL G +R + R
Sbjct: 78 LGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD--QIREALRLHGKGSRAEARKRAVE 135
Query: 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
+L+++GL + +SGG R+R I + + P LL+ DEPT+ LD T+ +
Sbjct: 136 LLEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 272 LIQVLQK-VAKAGRTVITTIH 291
++ +L+ + G V+ H
Sbjct: 193 ILDLLKDLQRELGMAVLFITH 213
|
Length = 539 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 32/225 (14%)
Query: 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--------PALKRRIGFVTQD 175
I AL GPSGSGKT+L+ ++ G D +G I N P KRRIG+V QD
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQD 84
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
L P TV L + + + ++ V ++ E L+R T +S
Sbjct: 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQL-----VALLGIEHLLDRYPGT---------LS 130
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
GGE++R +IG +L P LLL+DEP + LD +++ L+++ I +
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190
Query: 296 RMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAE 340
+ + D+++++ G G E P
Sbjct: 191 EVLRLADRVVVLENGKVKASGPLEEVW---------GSPDFPPWL 226
|
Length = 352 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 121 PG-EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--------PALKRRIGF 171
PG + A+ G SGSGKTTL++++ G LT +G I N P KRRIG+
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNR---QQKYARVQMILKELGLERCRHTRVGG 228
V Q+ L P L+V L + M R ++ + +++ LG+ G
Sbjct: 80 VFQEARLFPHLSVRGNLRYG--------MKRARPSERRISFERVIELLGIGHLLGRLPGR 131
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT 288
+SGGE++R +IG +L P LLL+DEP + LD +++ L+++ I
Sbjct: 132 -----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 289 TIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDL 345
+ + + D+++++ +G G E + +P +A L++
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW----ASPDLPWLAREDQGSLIEG 239
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-23
Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 27/219 (12%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNP--ALKR 167
L ++ ++ PG +AL+GP+G+GK+TL ++ RL +G I+ D+ P AL
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLT-RLYVAQEGQISVAGHDLRRAPRAAL-A 74
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
R+G V Q L L+V + L + A L ++R + AR+ +L LGL +V
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADDKV- 130
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK-VAKAGRTV 286
+ ++GG R+R I +L P+LLLLDEPT GLD S + ++ G +V
Sbjct: 131 ----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSV 186
Query: 287 ITTIH-----QPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ H + D+L+++ G + G A E
Sbjct: 187 LWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 4e-23
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 25/190 (13%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTT-------LLKIVGGRLTDDVKGNITYNDIPYNPA 164
++G++ + GEI L+GP+G+GKTT LLK GR T V G+ D+ P
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT--VAGH----DVVREPR 69
Query: 165 -LKRRIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
++RRIG V QD + +LT E L + A +PG R+ R+ +L +GL
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE----RIDELLDFVGLLEAA 125
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK-VAK 281
V K SGG R+R I ++ P +L LDEPT GLD + + + ++K +
Sbjct: 126 DRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180
Query: 282 AGRTVITTIH 291
G T++ T H
Sbjct: 181 FGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 5e-23
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 21/202 (10%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQDDVLL 179
GEI A++GPSGSGK+TLL ++ G T G + N D+ P R + + Q++ L
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLF 82
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK----GIS 235
LTVE+ + PG + +++ L +GL G K +S
Sbjct: 83 AHLTVEQNVGLG---LSPGLKLTAEDRQAIEVALARVGL---------AGLEKRLPGELS 130
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAGRTVITTIHQPS 294
GGER+R ++ ++ D +LLLDEP + LD +++ ++ + A+ TV+ HQP
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 295 SRMFHMFDKLLLISEGYPVYYG 316
+ +++ + G G
Sbjct: 191 DAK-RLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 5e-23
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 11/157 (7%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRI 169
L + + G ++AL+GPSGSGK+TLL+I+ G L G I N D A R+I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDSGRIRLNGQDATRVHARDRKI 74
Query: 170 GFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229
GFV Q L LTV + + F +R + + ARV+ +L+ + LE +G
Sbjct: 75 GFVFQHYALFKHLTVRDNIAFGLEIRKH---PKAKIKARVEELLELVQLE-----GLGDR 126
Query: 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
+ +SGG+R+R ++ + V+P +LLLDEP LD+
Sbjct: 127 YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-23
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 28/225 (12%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY----NPALK 166
LK ++ GE +A++G SGSGK+TLL+++ G D +G+IT N + AL+
Sbjct: 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALR 411
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE------- 219
I +TQ V L T+ + L A N + L+++GLE
Sbjct: 412 ETISVLTQR-VHLFSGTLRDNLRLA---------NPDASDEELWAALQQVGLEKLLESAP 461
Query: 220 RCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
+T +G GG + +SGGER+R ++ +L D L LLDEPT GLD + +++ +L +
Sbjct: 462 DGLNTWLGEGG--RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
A+ G+T++ H+ R D+++++ G + G E +
Sbjct: 520 HAE-GKTLLMVTHR--LRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 7e-23
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 26/227 (11%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-----KGNITYN--DIPY 161
K LK I I ++ AL+GPSG GK+TLL+ + R+ D V +G + ++ DI Y
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN-RMNDLVPGVRIEGKVLFDGQDI-Y 71
Query: 162 NP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
+ L+RR+G V Q P +++ + + + RL G ++++ V+ LK+
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKA 128
Query: 217 GLERCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L R+ G+SGG+++R I + V+P +LLLDEPTS LD + K+ ++
Sbjct: 129 ALWDEVKDRLHDSAL--GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 276 LQKVAKAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+Q++ K VI T H Q ++R + D+ +G V YG +
Sbjct: 187 IQELKKKYTIVIVT-HNMQQAAR---ISDRTAFFYDGELVEYGPTEQ 229
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 9e-23
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYN--DI---- 159
K ILKG+ ++ GE+ A+MGP+GSGK+TL + G +V +G I ++ DI
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
P A + I Q V +P +T + L A R + ++ + LGL+
Sbjct: 75 PDERA-RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD 133
Query: 220 RCRHTR-VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
R V GF SGGE+KR I +L++P L +LDEP SGLD + + + +
Sbjct: 134 EEFLERYVNEGF----SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189
Query: 279 VAKAGRTVITTIHQP 293
+ + GR V+ H
Sbjct: 190 LREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 1e-22
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALK 166
IL I+ S+ GE +A+ GPSG GK+TLLKIV ++ G + + + A +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPEAYR 76
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
+++ + Q L TVE+ L+F +R NR+ A +L L T+
Sbjct: 77 QQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFALPDSILTKN 130
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK-VAKAGRT 285
I +SGGE++R ++ + P +LLLDE TS LD ++ + +++ + V +
Sbjct: 131 ----ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 286 VITTIHQPSSRMFHMFDKLLLISEG 310
V+ H + H DK++ + G
Sbjct: 187 VLWITHDKDQAIRH-ADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 1e-22
Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 17/224 (7%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
L K Y + ++ G++ S+ GEI+ L+GP+G+GKTT ++ G + D G I + DI
Sbjct: 6 LSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDI 64
Query: 160 PYNPALKRR---IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
P KR IG++ Q+ + +LTVEE + A L + G ++++++ +++ +L+E
Sbjct: 65 TKLPMHKRARLGIGYLPQEASIFRKLTVEENI--LAVLEIRG-LSKKEREEKLEELLEEF 121
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
+ R ++ +SGGER+R I + +P LLLDEP +G+D + + +++
Sbjct: 122 HITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ + G V+ T H + D+ +I EG + G E
Sbjct: 177 KILKDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEE 219
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-22
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--PALK 166
L + I GE + L+GPSG GKTT L+++ G L + G I P
Sbjct: 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKD 71
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
R I V Q+ L P +TV + + F LR + + + RV+ + + L +E +
Sbjct: 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP 128
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
K +SGG+R+R ++G I+ +P + L+DEP S LD
Sbjct: 129 -----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 67/211 (31%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 89 NPVKSVVSKVASQLS-LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145
+ +S VA L+ + K Y K ++ G++ ++ GE L+GP+G+GK+T+ +++ G
Sbjct: 31 ASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90
Query: 146 LTDDVKGNITYNDIPYNPALKR----RIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNM 200
+ D G IT +P PA R RIG V Q D L + TV E L VF + M
Sbjct: 91 TSPDA-GKITVLGVPV-PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG----M 144
Query: 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260
+ ++ A + +L+ LE RV +SGG ++R ++ ++ DP LL+LDEP
Sbjct: 145 STREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEP 199
Query: 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
T+GLD + + + + L+ + G+T++ T H
Sbjct: 200 TTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 4e-22
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 20/191 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLK-------IVGGRL-TDDVKGNITYNDIPYN 162
+L I +I GE++ ++GPSGSGK+TLL+ I G L D +K N D
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDER-- 73
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ERC 221
+++ G V Q L P LT E ++F LR+ G ++++ + + +L ++GL ER
Sbjct: 74 -LIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRG-ASKEEAEKQARELLAKVGLAERA 130
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
H + +SGG+++R +I + V P L+L DEPTS LD +++++V+Q +A+
Sbjct: 131 HH------YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 282 AGRTVITTIHQ 292
G T++ H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKR 167
+ ++ + PGEI+ L+GP+G+GKTTL ++ G G + + DI P +
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRI 76
Query: 168 -RIGFVT--QDDVLLPQLTVEE--------TLVFAAFLRLPGNMNRQQK-YARVQMILKE 215
R+G Q L P LTV E L + L P +++ R + +L+
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+GL G +S G+++R I + P LLLLDEP +GL+ +L ++
Sbjct: 137 VGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 276 LQKVAK-AGRTVI 287
++++ G T++
Sbjct: 192 IRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 32/190 (16%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYN--DIPY 161
KH LK I I ++ AL+GPSG GK+TLL+ + R+ D V+G + + +I Y
Sbjct: 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDGKNI-Y 77
Query: 162 NP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
+P L+RR+G V Q P +++ + + + LRL G +++ V+ LK+
Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYG--LRLHGIKDKELD-EIVESSLKKA 133
Query: 217 GL-----ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
L +R + G+SGG+++R I + V P +LL+DEPTS LD S K
Sbjct: 134 ALWDEVKDRLHKS----AL--GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187
Query: 272 ---LIQVLQK 278
LI L+K
Sbjct: 188 IEELITELKK 197
|
Length = 253 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-----DI 159
D +L+ I+ I GE +AL+GPSGSGK+TL+ ++ R D G I + D
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSGRILIDGHDVRDY 69
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--G 217
+L+R+IG V+QD V L TV E + + + + A + EL G
Sbjct: 70 TLA-SLRRQIGLVSQD-VFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEG 127
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VL 276
T +G +K +SGG+R+R +I +L DP +L+LDE TS LD+ S +L+Q L
Sbjct: 128 Y----DTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQAAL 181
Query: 277 QKVAKAGRTVITTIHQPS 294
+++ K RT H+ S
Sbjct: 182 ERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNP-ALK 166
ILKG++ +I PG+ +AL+G SG GK+T++ ++ R D G I + + N L+
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTSGEILLDGVDIRDLNLRWLR 76
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-GLERCRHTR 225
+IG V+Q+ VL T+ E + + ++ A+ I + L T
Sbjct: 77 SQIGLVSQEPVLFDG-TIAENIRYGKP---DATDEEVEEAAKKANIHDFIMSLPDGYDTL 132
Query: 226 VG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAKAG 283
VG G +SGG+++R +I +L +P +LLLDE TS LD+ S KL+Q L + K G
Sbjct: 133 VGERGSQ--LSGGQKQRIAIARALLRNPKILLLDEATSALDAES-EKLVQEALDRAMK-G 188
Query: 284 RTVITTIHQPSS 295
RT I H+ S+
Sbjct: 189 RTTIVIAHRLST 200
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
Query: 103 SLDKDYK--HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--D 158
+L K YK ++ ++ + GEI+ L+GP+G+GKTT ++ G + D G I + D
Sbjct: 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDED 67
Query: 159 IPYNPALKRR---IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
I P KR IG++ Q+ + +LTVE+ ++ +R ++K + +L+E
Sbjct: 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERK-EELDALLEE 126
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ R ++ +SGGER+R I + +P +LLDEP +G+D
Sbjct: 127 FHITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-21
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV 177
S GE+L L+GP+G+GKTTLL+ + G L KG + R IG+V Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGASPGKG-WRHIGYVPQRHE 59
Query: 178 L---LPQLTVEETLVFAAFLRLPGNMNRQQK--YARVQMILKELGLERCRHTRVGGGFIK 232
P ++V T V + G + R +A V+ L+ +GL VG
Sbjct: 60 FAWDFP-ISVAHT-VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE---- 113
Query: 233 GISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+SGG+R+R + + PS+LLLDEP +GLD + L ++ ++A AG ++ T H
Sbjct: 114 -LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Query: 293 PSSRMFHMFDKLLL-----ISEGYP 312
+ M D+++L I++G P
Sbjct: 173 LAQAM-ATCDRVVLLNGRVIADGTP 196
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 4e-21
Identities = 63/227 (27%), Positives = 127/227 (55%), Gaps = 16/227 (7%)
Query: 103 SLDKDYK--HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-- 158
+L K YK +++ ++ ++ GEI+ L+GP+G+GKTT +V G + D GNI +D
Sbjct: 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA-GNIIIDDED 66
Query: 159 ---IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
+P + +R IG++ Q+ + +L+V + L+ A L++ +++ +Q+ R +++E
Sbjct: 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEE 124
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+E H R G + +SGGER+R I + +P +LLDEP +G+D S + ++
Sbjct: 125 FHIE---HLRDSMG--QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
++ + +G V+ T H + + ++ ++S+G+ + +G E +
Sbjct: 180 IEHLRDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 5e-21
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 26/197 (13%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LKR 167
L+ ++ ++ PGE +AL+GPSG+GK+TLL ++ G + +G+I N +P A +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLADADADSWRD 396
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------ 221
+I +V Q L T+ E + A A ++ L+ GL+
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLAR---------PDASDAEIREALERAGLDEFVAALPQ 446
Query: 222 -RHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
T +G GG G+SGG+ +R ++ L D LLLLDEPT+ LD+ + ++++ L+ +
Sbjct: 447 GLDTPIGEGG--AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL 504
Query: 280 AKAGRTVITTIHQPSSR 296
A+ GRTV+ H+ +
Sbjct: 505 AQ-GRTVLLVTHRLALA 520
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 6e-21
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 106 KDYKHI---LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP-- 160
K Y + + I GE L L+GPSGSGKTT +K++ RL + G I +
Sbjct: 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-NRLIEPTSGEIFIDGEDIR 66
Query: 161 -YNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
+P L+R+IG+V Q L P +TVEE + A +L +++ R +L +GL
Sbjct: 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLLK-WPKEKIRERADELLALVGL 123
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
+ + +SGG+++R + + DP LLL+DEP LD + ++L + ++
Sbjct: 124 DP---AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180
Query: 279 VAKA-GRTVITTIH 291
+ + G+T++ H
Sbjct: 181 LQQELGKTIVFVTH 194
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 7e-21
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 20/190 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------PA 164
+LKG+ + GE+LAL+G +G+GK+TLL + G L G + + P +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGLLE 65
Query: 165 LKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNM--NRQQKYARVQMILKELGLERC 221
++R+G V QD D L V++ + F P N+ + + RV+ L +G
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFG-----PLNLGLSEAEVERRVREALTAVGASGL 120
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
R +SGGE+KR +I + + P +LLLDEPT+GLD +++ +L+++
Sbjct: 121 RERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 282 AGRTVITTIH 291
G TV+ + H
Sbjct: 176 EGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 8e-21
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----A 164
++ S+ GEI AL+G +G+GK+TL+KI+ G D G I + A
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVRIKSPRDA 76
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
++ IG V Q +L+P LTV E ++ G ++R+Q AR++ + + GL
Sbjct: 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDA 136
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
+V +S GE++R I + LL+LDEPT+ L A++L ++L+++A G+
Sbjct: 137 KVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191
Query: 285 TVI 287
T+I
Sbjct: 192 TII 194
|
Length = 501 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 1e-20
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 98 VASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKG 152
A +++ K +K + + G + AL+GPSG GKTT L+ + R+ D V G
Sbjct: 6 SAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTG 64
Query: 153 NITYN--DIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK 205
I + DI Y P A++RR+G V Q P ++V + +V A L+L G +R
Sbjct: 65 RILLDGQDI-YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHL 121
Query: 206 YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ L+ L R+ G+SGG+++R I + V+P +LL+DEPTS LD
Sbjct: 122 MEVAERSLRGAALWDEVKDRLKTP-ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
Query: 266 STSANKLIQVLQKVAKAGRTVITT--IHQPS 294
S ++ ++ + K +I T +HQ +
Sbjct: 181 PASTARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-20
Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 26/230 (11%)
Query: 102 LSLDK---DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN- 157
L+LD Y H+ ++ GEI+A++GPSG+GK+TLL ++ G T G I N
Sbjct: 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILING 60
Query: 158 -DIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKE 215
D +P +R + + Q++ L LTV + + PG +N +Q+ +V+ +
Sbjct: 61 VDHTASPPAERPVSMLFQENNLFAHLTVAQNI---GLGLSPGLKLNAEQR-EKVEAAAAQ 116
Query: 216 LGLERCRHTRVGGGFIK----GISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
+GL GF+K +SGG+R+R ++ ++ + +LLLDEP S LD +
Sbjct: 117 VGL---------AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167
Query: 272 LIQVLQKV-AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
++ ++ ++ + T++ H P + D+++ + G G +E
Sbjct: 168 MLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQE 216
|
Length = 231 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-20
Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 33/236 (13%)
Query: 80 RINKAASDSNPVKSVVSKVASQLSLDK-------------DYKHILKGITGSICPGEILA 126
RI + + PV + A + L K +L G++ + PGE +A
Sbjct: 306 RIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVA 365
Query: 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP----YNPALKRRIGFVTQDDVLLPQL 182
++GPSGSGK+TLL + G L D ++G +T + +P ++RR+ QD L
Sbjct: 366 ILGPSGSGKSTLLATLAGLL-DPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD----AHL 420
Query: 183 ---TVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GLERCRHTRVGGGFIKGISGG 237
TV E L A + + + L+ L GL T +G G + +SGG
Sbjct: 421 FDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL----DTVLGEGGAR-LSGG 475
Query: 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293
ER+R ++ +L D +LLLDEPT LD+ +A++L++ L A +GRTV+ H
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 3e-20
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRI 169
L ++ I GE++AL+GPSGSGKTTLL+++ G L G I + D P +R +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNV 76
Query: 170 GFVTQDDVLLPQLTVEETLVFAAFLRL---PGNMNRQQKYARVQMILKELGLERCRHTRV 226
GFV Q L +TV + + F LR+ + A+V +LK + L+ +
Sbjct: 77 GFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLD-----WL 129
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
+ +SGG+R+R ++ + V+P +LLLDEP LD+
Sbjct: 130 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-20
Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 25/223 (11%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITYN--DI-PYNP- 163
K L+GI+ S+ GE LA++GPSGSGK+TL + IVG G++ + D+ ++
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADLKQWDRE 388
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARV-QMILKELG 217
+ IG++ QD L P TV E + R N + ++ K A V ++IL+
Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENIA-----RFGENADPEKIIEAAKLAGVHELILR--- 439
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
L T +G G +SGG+R+R ++ + DP L++LDEP S LD L ++
Sbjct: 440 LPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ G TV+ H+PS + DK+L++ +G +G+ E
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-20
Identities = 62/225 (27%), Positives = 118/225 (52%), Gaps = 27/225 (12%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGNITYN-DIPYN 162
+L GI + PGE++A++GPSGSGKTTLL+ + G + G+IT + +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR---VGDITIDTARSLS 74
Query: 163 P------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
L++ +GFV Q+ L P TV E ++ + +++ AR + +L ++
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV--IVKGEPKEEATARARELLAKV 132
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GL + + + +SGG+++R +I + + P ++L DEPTS LD +++ +
Sbjct: 133 GLAGKETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187
Query: 277 QKVAKAGRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGKARE 320
+++A+ RT++ H+ S +R + D+ + + +G V G A+
Sbjct: 188 RQLAQEKRTMVIVTHEMSFAR--DVADRAIFMDQGRIVEQGPAKA 230
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 5e-20
Identities = 81/242 (33%), Positives = 116/242 (47%), Gaps = 32/242 (13%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-----NITYNDIPYNPA 164
I K I I GE + +GPSG GK+TLL+++ G L D G ND+P PA
Sbjct: 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVP--PA 73
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG--LERCR 222
+R +G V Q L P L+V E + F L Q+ +V +L +L L+R
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL-QLAHLLDRKP 131
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL---IQVLQKV 279
K +SGG+R+R +IG ++ +PS+ LLDEP S LD+ ++ I L K
Sbjct: 132 ---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK- 181
Query: 280 AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY----FSSLGFIPEIA 335
+ GRT+I H M + DK++++ G GK E Y F + GFI
Sbjct: 182 -RLGRTMIYVTHDQVEAM-TLADKIVVLDAGRVAQVGKPLELYHYPANRFVA-GFIGSPK 238
Query: 336 MN 337
MN
Sbjct: 239 MN 240
|
Length = 369 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 5e-20
Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA- 164
K +LK I+ SI PGE +A++GPSGSGK+TL+K++ RL D G I + I +
Sbjct: 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLDS 400
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GLERCR 222
L++RIG V+QD +L T+ E + P + + + A E L
Sbjct: 401 LRKRIGIVSQDPLLFSG-TIRENIALG----RPDATDEEIEEALKLANAHEFIANLPDGY 455
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
T VG + +SGG+R+R +I +L +P +L+LDE TS LD+ + + L+K+ K
Sbjct: 456 DTIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK- 513
Query: 283 GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
GRT + H+ S+ D+++++ G V G E
Sbjct: 514 GRTTLIIAHRLSTIK--NADRIIVLDNGRIVERGTHEE 549
|
Length = 567 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 5e-20
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 50/213 (23%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
S + + +LK ++ + GE +AL+G SGSGK+TLL+++ G L +G IT + +P
Sbjct: 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVP 65
Query: 161 ---YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
AL I + Q +F LR N+ R+
Sbjct: 66 VSDLEKALSSLISVLNQ-----------RPYLFDTTLR--NNLGRR-------------- 98
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
SGGER+R ++ +L D ++LLDEPT GLD + +L+ ++
Sbjct: 99 ----------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+V K +T+I H + DK+L + G
Sbjct: 143 EVLK-DKTLIWITHHLTG--IEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 5e-20
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 29/217 (13%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-IPYN--PALKRR 168
LKGI+ +I GEI+ +GP+G+GKTT LKI+ G L G + +P+ RR
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRRKKFLRR 95
Query: 169 IGFVT-QDDVLLPQLTVEETLVF-AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
IG V Q L L V ++ AA LP ++ R+ + + L LE T V
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK----RLDELSELLDLEELLDTPV 151
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK-VAKAGRT 285
+ +S G+R R I +L +P +L LDEPT GLD + + L++ + G T
Sbjct: 152 -----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTT 206
Query: 286 VITTIHQPSSRMFHMFD------KLLLISEGYPVYYG 316
V+ T H +M D ++L+I +G +Y G
Sbjct: 207 VLLTSH-------YMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 6e-20
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 26/186 (13%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTT----LLKIVGGRLTDDVKGNITYNDIP-- 160
D+ ++K I+ ++ PGE L L+G SGSGK+T LL+++ + G I ++ P
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ------GEIWFDGQPLH 350
Query: 161 -YNP----ALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRL-PGNMNRQQKYARVQMI 212
N ++ RI V QD L P+L V + + LR+ ++ Q+ +V +
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAV 408
Query: 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
++E+GL+ R F SGG+R+R +I +++ PSL++LDEPTS LD T ++
Sbjct: 409 MEEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 273 IQVLQK 278
+ +L+
Sbjct: 465 LALLKS 470
|
Length = 529 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-20
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 136 TTLLKIVGGRLTDDVKGNITYN-----DIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190
+TLLK++ G L G I + + L++RIG V QD L P+LTV E L F
Sbjct: 1 STLLKLITGLLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV 250
+ ++ AR + L+ +GL G SGG+++R +I +L
Sbjct: 60 --------GLRDKEADARAEEALERVGLPDFLDREPVGTL----SGGQKQRVAIARALLK 107
Query: 251 DPSLLLLDEPTS 262
P LLLLDEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 8e-20
Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 24/232 (10%)
Query: 96 SKVASQLS-LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152
S VA L + K Y K ++ ++ +I GE L+GP+G+GK+T+ +++ G ++ D G
Sbjct: 1 SNVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR-G 59
Query: 153 NITYNDIPYNPALKR----RIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNMNRQQKYA 207
IT P P+ R IG V Q D L P+ TV E L VF + M+ ++ A
Sbjct: 60 KITVLGEPV-PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----MSTREIEA 114
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
+ +L+ LE RV +SGG ++R ++ ++ DP LL+LDEPT+GLD
Sbjct: 115 VIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 169
Query: 268 SANKLIQVLQKVAKAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVYYGK 317
+ + + + L+ + G+T++ T H + + R + D+L ++ G + G+
Sbjct: 170 ARHLIWERLRSLLARGKTILLTTHFMEEAER---LCDRLCVLESGRKIAEGR 218
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 9e-20
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 21/212 (9%)
Query: 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNI 154
S LS+ + K L ++ P EI AL+GPSGSGK+TLL+ + R+ D + G+I
Sbjct: 9 SDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN-RMNDLNPEVTITGSI 67
Query: 155 TYN--DIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA 207
YN +I Y+P L++ IG V Q P +++ E +V+ LRL G ++Q
Sbjct: 68 VYNGHNI-YSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDE 123
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
V+ LK + R+ + G+SGG+++R I + P ++LLDEPTS LD
Sbjct: 124 AVEKSLKGASIWDEVKDRLHDSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 268 SANKLIQVLQKVAKAGRTVITTIH--QPSSRM 297
SA K+ + L + K T++ Q +SR+
Sbjct: 183 SAGKIEETLLGL-KDDYTMLLVTRSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-19
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 53/204 (25%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALK 166
+L+ ++ SI PGE LA++GPSGSGK+TL +++ G L G + + + L
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELG 75
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
+G++ QDD L ++ E IL
Sbjct: 76 DHVGYLPQDDELFSG-SIAEN------------------------IL------------- 97
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
SGG+R+R + + +P +L+LDEP S LD L Q + + AG T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 287 ITTIHQPSSRMFHMFDKLLLISEG 310
I H+P D++L++ +G
Sbjct: 150 IVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A LS + +L G++ + PGE+LA++GP+G+GK+TLLK + G L+ D G +T N
Sbjct: 4 AENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNG 62
Query: 159 IPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
+P N L R + Q+ L TV+E + R+P R+ + I
Sbjct: 63 VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREP--EEDERIAA 117
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIG------YEILVDPSLLLLDEPTSGLDSTS 268
+ L + + G + +SGGE++R + + + L LDEPTS LD
Sbjct: 118 QA-LAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176
Query: 269 ANKLIQVLQKVAKAGRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGK 317
+ +++ +++A+ G V+ +H + + + D+++L+ +G + G
Sbjct: 177 QHHTLRLARQLAREGGAVLAVLHDLNLAAQYA--DRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 23/205 (11%)
Query: 91 VKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150
V S+ +Q +LD ++ G I+ +GP+G+GK+T +KI+ G L D
Sbjct: 5 VSSLTKLYGTQNALD--------EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD- 55
Query: 151 KGNITYN--DIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVF-AAFLRLPGNMNRQQKY 206
G++ D+ NP ++R IG++ + + L + V E L F A + G + +Q
Sbjct: 56 SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ--- 112
Query: 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
RV+ +++ +GL +H ++G +S G R+R + ++ DP +L+LDEPT+GLD
Sbjct: 113 -RVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDP 166
Query: 267 TSANKLIQVLQKVAKAGRTVITTIH 291
++ V++ + K +T+I + H
Sbjct: 167 NQLVEIRNVIKNIGKD-KTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 2e-19
Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITYNDIPY-NPA 164
D IL I+ I PGE++ ++G SGSGK+TL K I + ++ + + +D+ +PA
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72
Query: 165 -LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARV----QMILKELGL 218
L+R++G V Q++VL + ++ + + A PG +M R + A++ I + L
Sbjct: 73 WLRRQVGVVLQENVLFNR-SIRDNIALAD----PGMSMERVIEAAKLAGAHDFISE---L 124
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
T VG G+SGG+R+R +I ++ +P +L+ DE TS LD S + +++ +
Sbjct: 125 PEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ AGRTVI H+ S+ D+++++ +G V G E
Sbjct: 184 IC-AGRTVIIIAHRLSTVK--NADRIIVMEKGRIVEQGSHDE 222
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI 159
LSL + +L+ ++ ++ PGE + L+G +G+GK+TLLKI+ G L D G +T
Sbjct: 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD-SGEVT---- 61
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL------------PGNMNRQQKYA 207
R+G+++Q+ L P+ TV + V F L + A
Sbjct: 62 RPKGL---RVGYLSQEPPLDPEKTVLDY-VIEGFGELRELLAELEEAYALLADPDDELLA 117
Query: 208 RVQMILKELGLERCRH--TRVGGGF--------IKGISGGERKRTSIGYEILVDPSLLLL 257
++ +L+EL G + +SGG R+R ++ +L +P LLLL
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 258 DEPTSGLDSTSANKLIQVLQK 278
DEPT+ LD S L L++
Sbjct: 178 DEPTNHLDLESIEWLEDYLKR 198
|
Length = 530 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 2e-19
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 47/190 (24%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYNDIPYNPALKR 167
K ILKG+ +I GE+ ALMGP+GSGK+TL K + G +V +G I +
Sbjct: 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF----------- 61
Query: 168 RIGFVTQDDVLLPQLTVEE------TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
+ L EE L F +PG + L+ +
Sbjct: 62 -------KGEDITDLPPEERARLGIFLAFQYPPEIPG--------VKNADFLRYVN---- 102
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+G SGGE+KR I +L++P L +LDEP SGLD + + +V+ K+ +
Sbjct: 103 ----------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE 152
Query: 282 AGRTVITTIH 291
G++V+ H
Sbjct: 153 EGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-19
Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 24/200 (12%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITYN------DI---- 159
+LK ++ ++ GE +AL GPSG+GK+TLLK + L D G I D+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQAS 80
Query: 160 PYNPALKRR--IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
P RR IG+V+Q ++P+++ E V A L G + R+ AR + +L L
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALE--VVAEPLLERG-VPREAARARARELLARLN 137
Query: 218 L-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
+ ER H SGGE++R +I + D +LLLDEPT+ LD+ + +++++
Sbjct: 138 IPERLWHL-----PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 277 QKVAKAGRTVITTIHQPSSR 296
+ G +I H R
Sbjct: 193 AEAKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 3e-19
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 27/196 (13%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVG-------GRLTDDVKG-NITYNDIPYN 162
+LKGI+ I GE++A++G SGSGK+TL+ I+G G T V G ++ D
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG--TYRVAGQDVATLDADAL 80
Query: 163 PALKRR-IGFVTQDDVLLPQLT----VEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
L+R GF+ Q LL LT VE V+A + R+Q+ R Q +L+ LG
Sbjct: 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-------LERKQRLLRAQELLQRLG 133
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE + +SGG+++R SI ++ ++L DEPT LDS S +++ +L
Sbjct: 134 LEDRVEYQPSQ-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILH 188
Query: 278 KVAKAGRTVITTIHQP 293
++ G TVI H P
Sbjct: 189 QLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
L++ K IL ++ S+ G+I AL+GP+G GK+TLLK RL G + D P
Sbjct: 7 NLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKP 65
Query: 161 YNP----ALKRRIGFVTQDDVLLPQLTVEETLVF--AAFLRLPGNMNRQQKYARVQMILK 214
+ L RR+ + Q + +TV E + + + +L L G ++ + ARV ++
Sbjct: 66 ISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-ARVNQAME 124
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+ + R+ +SGG+R+R + + D ++LLDEPT+ LD +L++
Sbjct: 125 QTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179
Query: 275 VLQKVAKAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
+++++ G+TV+T +H +SR D L++++ G+ + G E M
Sbjct: 180 LMRELNTQGKTVVTVLHDLNQASR---YCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 39/222 (17%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGN-ITYNDIPYNPAL 165
LKGI GE++AL+GP+G+GK+TL G L +KG I Y+ +L
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD----KKSL 73
Query: 166 ---KRRIGFVTQ--DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
++ +G V Q DD L TVEE + F L L + +K RV+ LK +G+E
Sbjct: 74 LEVRKTVGIVFQNPDDQLFAP-TVEEDVAFGP-LNLGLSKEEVEK--RVKEALKAVGME- 128
Query: 221 CRHTRVGGGFIKG----ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GF +SGG++KR +I + + P +++LDEPTSGLD A++++++L
Sbjct: 129 --------GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
Query: 277 QKVAKAGRTVITTIHQ----P--SSRMFHMFDKLLLISEGYP 312
+ K G T+I + H P + +++ M D +I EG P
Sbjct: 181 YDLNKEGITIIISTHDVDLVPVYADKVYVMSDG-KIIKEGTP 221
|
Length = 275 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-19
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 18/221 (8%)
Query: 104 LDKDYK--HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K + + I+ ++ + L+GP+G+GK+TLLK++ G L G I ++ P+
Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT-SGEIIFDGHPW 64
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
+IG + + L LT E L V L LP +R+ +L + L
Sbjct: 65 TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP--------DSRIDEVLNIVDLTN 116
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+ K S G ++R I +L P LL+LDEPT+GLD +L ++++
Sbjct: 117 TGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
Query: 281 KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321
+ G TVI + H S + + D + +ISEG Y GK +S
Sbjct: 172 EQGITVILSSH-ILSEVQQLADHIGIISEGVLGYQGKINKS 211
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 5e-19
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 37/249 (14%)
Query: 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI--------TYNDIPYNPALKRRIG 170
I GEI +MG SGSGK+T ++++ RL + G I + + +++IG
Sbjct: 16 IAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG 74
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
V Q L P +T+ + L G Q++ + +LK +GLE H +
Sbjct: 75 MVFQQFALFPHMTILQNTSLG--PELLG-WPEQERKEKALELLKLVGLEEYEHR-----Y 126
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAGRTVITT 289
+SGG ++R + + +P +LL+DE S LD + + L+K+ A +T++
Sbjct: 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186
Query: 290 IHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPA-----EFLLD 344
H + + D+++++ G V G EI NPA EF+
Sbjct: 187 THDLDEAI-RIGDRIVIMKAGEIVQVGTPD-------------EILRNPANEYVEEFIGK 232
Query: 345 LATGQVTDI 353
+ QV D
Sbjct: 233 VDLSQVFDA 241
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 5e-19
Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 19/231 (8%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD----VKGNITYNDIP 160
D + G++ + GEIL ++G SGSGK+ L K + G L V G I ++
Sbjct: 14 DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD 73
Query: 161 YNPALKRR--------IGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
++ I + QD L P +T+ + + L +++++ R
Sbjct: 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG-KGLSKKEAKERAI 132
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+L+ +G+ R + +SGG R+R I + ++P LL+ DEPT+ LD T
Sbjct: 133 ELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+++ +L+++ + G +I H + + D++ ++ G V G E
Sbjct: 191 QILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPVEE 240
|
Length = 316 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 5e-19
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKR-RI 169
+ GEI +MG SGSGK+TLL+ + RL + G + + L+R +I
Sbjct: 46 DVREGEIFVIMGLSGSGKSTLLRCI-NRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104
Query: 170 GFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229
V Q LLP TV E + F L + G + R ++ R L+ +GLE H
Sbjct: 105 SMVFQSFALLPHRTVLENVAFG--LEVQG-VPRAEREERAAEALELVGLEGWEHK----- 156
Query: 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI------QVLQKVAKAG 283
+ +SGG ++R + + VDP +LL+DE S LD LI ++L+ A+
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP-----LIRREMQDELLRLQAELQ 211
Query: 284 RTVITTIH 291
+T++ H
Sbjct: 212 KTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-19
Identities = 51/195 (26%), Positives = 104/195 (53%), Gaps = 14/195 (7%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
+ K Y K +L ++ I G I +++GP+G+GK+TLL ++ RL G IT + ++
Sbjct: 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKDSGEITIDGLEL 65
Query: 160 PYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
P L +++ + Q++ + +LTV + + F F G + ++ + + ++ L
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR-RIINEAIEYLH 124
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE ++ +SGG+R+R I + D +LLDEP + LD + +++++L+
Sbjct: 125 LEDLS-----DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 278 KVAKA-GRTVITTIH 291
++A G+T++ +H
Sbjct: 180 RLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 7e-19
Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 20/223 (8%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA-- 164
D H LKGI +I GE+ A++G +G+GK+TL + + G L G I ++ P + +
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRK 75
Query: 165 ----LKRRIGFVTQD-DVLLPQLTVEETLVFAAF-LRLPGNMNRQQKYARVQMILKELGL 218
L+ +G V QD D L +V + + F A L+LP + RV LK G+
Sbjct: 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGI 131
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
E + +S G++KR +I ++++P +L+LDEPT+GLD ++++++L +
Sbjct: 132 EHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 279 VAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ K G T+I H + D + ++ EG + G +E
Sbjct: 187 MQKELGLTIIIATHDIDIVPLYC-DNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 60/332 (18%)
Query: 19 TMGSMQIAAGSNGFGHSIEFMSQAYLRNRYSEIDIVDESSS------IEKDRPLPIFLKF 72
TM ++ + G G + A L ++ + S + ++ +
Sbjct: 186 TMSALGVEEGQLTVGDLV--NVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL--- 240
Query: 73 EDVEYKVRINKAASDSNPVKSV----VSKVASQLSLDKDYKHILKGITGSICPGEILALM 128
DVE +V A D+ P+ V V+ + + D + IL GI+ +I G+ +A++
Sbjct: 241 -DVEAEV---SDAPDAPPLWPVRLGAVAFINVSFAYDP-RRPILNGISFTIPLGKTVAIV 295
Query: 129 GPSGSGKTTLLKIVGGRLTDDVKGNITYND----IPYNPALKRRIGFVTQDDVLL----- 179
G SG+GK+T+L+++ R D G+IT + +L+R IG V QD VL
Sbjct: 296 GESGAGKSTILRLLF-RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIA 354
Query: 180 -------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GLERCRHTRVGGGF 230
P T E + AA + A++ ++ L G + T VG
Sbjct: 355 YNIKYGRPDAT-AEEVGAAA------------EAAQIHDFIQSLPEGYD----TGVGERG 397
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
+K +SGGE++R +I IL +P +L+LDE TS LD T + IQ + AGRT +
Sbjct: 398 LK-LSGGEKQRVAIARTILKNPPILILDEATSALD-THTEQAIQAALREVSAGRTTLVIA 455
Query: 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
H+ S+ + D+++++ G V G E +
Sbjct: 456 HRLSTIIDA--DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 16/216 (7%)
Query: 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQDDVLLPQLTV 184
L+GPSG GKTTLL+++ G D G+I + D+ P R I V Q L P +TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI 244
EE + F L++ + R + RV L+ + LE +SGG+++R ++
Sbjct: 60 EENVAFG--LKMRK-VPRAEIKPRVLEALRLVQLEE-----FADRKPHQLSGGQQQRVAL 111
Query: 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDK 303
++ P +LLLDEP S LD +++ L+ + + G T + H M M D+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAM-TMSDR 170
Query: 304 LLLISEGYPVYYGKARESMEYFSSL---GFIPEIAM 336
+ ++ +G G E E ++L FI EI +
Sbjct: 171 IAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINV 206
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 1e-18
Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 21/185 (11%)
Query: 120 CP-GEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGN-ITYNDIPYNPA---LKR 167
CP GE L L+GPSG+GK++LL+++ G L + GN ++ P + A L+R
Sbjct: 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN--IAGNHFDFSKTPSDKAIRDLRR 82
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
+G V Q L P LTV+E L+ A R+ G +++ Q AR + +LK L R
Sbjct: 83 NVGMVFQQYNLWPHLTVQENLIEAP-CRVLG-LSKDQALARAEKLLKRL-----RLKPYA 135
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
+ +SGG+++R +I ++++P +LL DEPT+ LD +++ +++++A+ G T +
Sbjct: 136 DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQV 195
Query: 288 TTIHQ 292
H+
Sbjct: 196 IVTHE 200
|
Length = 242 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-18
Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 20/217 (9%)
Query: 102 LSLDK---DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
L+LDK +Y+H+ ++ GEI+A+MGPSG+GK+TLL ++ G + G+I ND
Sbjct: 1 LALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVND 59
Query: 159 IPY--NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV--QMILK 214
+ +R + + Q++ L LTV + + L N +Q+K Q+ +
Sbjct: 60 QSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA 119
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+ L+R +SGG+R+R ++ ++ +LLLDEP S LD +++
Sbjct: 120 DY-LDRLPEQ---------LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA 169
Query: 275 VLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+++++ + RT++ H S + ++ ++S+G
Sbjct: 170 LVKQLCSERQRTLLMVTHHLSD-ARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 30/225 (13%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------- 162
LK ++ S+ GEI ++G SG+GK+TL++ + G G++ +
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKEL 77
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
+RRIG + Q LL TV E + L + G + + + RV +L+ +GLE
Sbjct: 78 RKARRRIGMIFQHFNLLSSRTVFENVALP--LEIAG-VPKAEIEERVLELLELVGLEDKA 134
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AK 281
+ +SGG+++R I + +P +LL DE TS LD + ++ +L+ + +
Sbjct: 135 DA-----YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE 189
Query: 282 AGRTVITTIHQPSSRMFHM------FDKLLLISEGYPVYYGKARE 320
G T++ H+ M D++ ++ +G V G E
Sbjct: 190 LGLTIVLITHE-------MEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 3e-18
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 27/214 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITY--NDI-PYNP- 163
K ILKGI+ ++ GE L ++GPSGSGK+TL + +VG G++ D+ ++
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSGSVRLDGADLRQWDRE 406
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARV-QMILK-EL 216
L R IG++ QD L T+ E + R + ++ + A V ++IL+
Sbjct: 407 QLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELILRLPQ 460
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
G + TR+G G +SGG+R+R ++ + DP L++LDEP S LDS L +
Sbjct: 461 GYD----TRIGEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAI 515
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
G TV+ H+PS DK+L++ +G
Sbjct: 516 LAAKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 28/194 (14%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI-PYNPA---- 164
+ + + GEI +MG SGSGK+TL++++ RL + +G I + DI + A
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLL-NRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 165 -LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
+++I V Q LLP TV E + F L + G + + ++ R L+ +GLE
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEGYAD 159
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI------QVLQ 277
+ +SGG ++R + + DP +LL+DE S LD LI ++L+
Sbjct: 160 K-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLE 209
Query: 278 KVAKAGRTVITTIH 291
AK +T++ H
Sbjct: 210 LQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-18
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 18/199 (9%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A L+ + + + +G++ ++ GE L + GP+G GKTTLL+I+ G L G + +N
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPDSGEVRWNG 61
Query: 159 IPYN---PALKRRIGFVTQDDVLLPQLTVEETLVF-AAFLRLPGNMNRQQKYARVQMILK 214
R I ++ L P+L+ E L F AA ++ L
Sbjct: 62 TALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT--------IEDALA 113
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+GL +S G+++R ++ L L +LDEPT+ LD L
Sbjct: 114 AVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAG 168
Query: 275 VLQKVAKAGRTVITTIHQP 293
+L+ G V+ T HQ
Sbjct: 169 LLRAHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 7e-18
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY-NPALKRRI 169
+ G++ ++ GE L L GP+GSGKTTLL+++ G L G I + +P +
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 170 GFVTQDDVLLPQLTVEETLVF-AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
++ + + P LTV E L F AAFL + + L+ +GL H G
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPLAHLPFG- 126
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT 288
+S G+++R ++ ++ + + +LDEPT+ LD+ + ++++ G VI
Sbjct: 127 ----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
Query: 289 TIHQP 293
H P
Sbjct: 183 ATHIP 187
|
Length = 207 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 8e-18
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-------NITYNDIPYNP 163
IL G+ + GE +AL+G SGSGK+TLL I+ G L D G + D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGSSGEVSLVGQPLHQMDEEARA 83
Query: 164 ALK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ERC 221
L+ + +GFV Q +L+P L E + A LR G +RQ + + +L++LGL +R
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR-NGAKALLEQLGLGKRL 140
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
H +SGGE++R ++ P +L DEPT LD + +K+ +L + +
Sbjct: 141 DH------LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 282 A-GRTVITTIHQP 293
G T+I H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 9e-18
Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 23/199 (11%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK-------------IVGG---RLTDDVKGN 153
+LKG++ G++++++G SGSGK+T L+ V G RL D G
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 154 ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213
+ D L+ R+G V Q L +TV E V A + + G +++ + R + L
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN-VIEAPVHVLG-VSKAEAIERAEKYL 137
Query: 214 KELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
++G+ + +SGG+++R +I + ++P ++L DEPTS LD +++
Sbjct: 138 AKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 274 QVLQKVAKAGRTVITTIHQ 292
+V+Q +A+ GRT++ H+
Sbjct: 193 KVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 35/185 (18%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A LS+ + +L ++ ++ PGE++A++GP+G+GK+TLL+ + G L+ D G + N
Sbjct: 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNG 63
Query: 159 IP---YNPA-LKRRIGFVTQDDVLLPQ-------LTVEETLVFAAFLRLPGNMNRQQKYA 207
P ++PA L RR +LPQ TVEE + A R P ++R + A
Sbjct: 64 RPLADWSPAELARRRA-------VLPQHSSLSFPFTVEEVV---AMGRAPHGLSRAEDDA 113
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV-------DPSLLLLDEP 260
V L ++ L R +SGGE++R + +L P LLLDEP
Sbjct: 114 LVAAALAQVDLAHLAG-R----DYPQLSGGEQQRVQLA-RVLAQLWEPDGPPRWLLLDEP 167
Query: 261 TSGLD 265
TS LD
Sbjct: 168 TSALD 172
|
Length = 258 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 23/219 (10%)
Query: 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA-LKRRIG 170
++ + GEIL L+GP+G+GK+TLL + G L G+I + P ++ A L R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHRA 72
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
+++Q + V + L L P + + + + + LGL+ V
Sbjct: 73 YLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ-- 126
Query: 231 IKGISGGERKRTSIGYEIL-VDPS------LLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
+SGGE +R + +L V P LLLLDEP + LD L ++L ++ + G
Sbjct: 127 ---LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQG 183
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
V+ + H + D++ L+ +G + G+ E +
Sbjct: 184 IAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 1e-17
Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 12/211 (5%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-PALKRRIG 170
LKG+ +I GE ++L+G SG GK+TLL ++ G L G + P R +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRMVV 59
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
F Q+ LLP LTV E + A LP ++++ ++ A V+ + +GL R G
Sbjct: 60 F--QNYSLLPWLTVRENIALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG--- 113
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS-TSANKLIQVLQKVAKAGRTVITT 289
+SGG ++R +I + + P +LLLDEP LD+ T N +++Q + TV+
Sbjct: 114 --QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 290 IHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
H + + D++++++ G G+ E
Sbjct: 172 THDVDEALL-LSDRVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYNDIPYN---PA 164
K ILKG+ ++ GEI A+MGP+GSGK+TL K + G + +V G I + P
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72
Query: 165 LKRRIG-FVT-QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK----------YARVQMI 212
+ R G F+ Q +P ++ E FLR N R + ++
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLE------FLRSALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 213 LKELGLERCRHTR-VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
L LG++ R V GF SGGE+KR I L++P L +LDE SGLD +
Sbjct: 127 LALLGMDEEFLNRSVNEGF----SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182
Query: 272 LIQVLQKVAKAGRTVITTIHQPSSRMF 298
+ + + ++ + R+ + H R+
Sbjct: 183 VAEGINRLREPDRSFLIITHYQ--RLL 207
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 34/168 (20%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK-IVGGRLTDDVKGNITYN--DI----PYN 162
HIL+G++ + GE+ ++G +G GKTTLLK ++G L G+I + DI P+
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG--LLPVKSGSIRLDGEDITKLPPHE 71
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETL--VFAAFLRLPGNMNRQQK-----YARVQMILKE 215
A + I +V Q + P+LTVEE L AA R R +K Y +LKE
Sbjct: 72 RA-RAGIAYVPQGREIFPRLTVEENLLTGLAALPR------RSRKIPDEIYELFP-VLKE 123
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263
+ R GG +SGG++++ +I ++ P LLLLDEPT G
Sbjct: 124 M-----LG-RRGG----DLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 1e-17
Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD------DVKGN 153
S+L L + K ILK IT I I +MGPSGSGK+TLLK++ RL + V G
Sbjct: 14 SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGK 72
Query: 154 ITY--NDIPYNPALKRR--IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
+ Y DI A+K R +G V Q P L++ + + + L+ G +++ V
Sbjct: 73 VLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIV 130
Query: 210 QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
+ L+++GL + + R+ + +SGG+++R +I + + P +LL+DEPTS +D ++
Sbjct: 131 EECLRKVGLWKEVYDRLNSPASQ-LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189
Query: 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ +++ ++ VI + H P ++ + D + + G V +G + E
Sbjct: 190 QAIEKLITELKNEIAIVIVS-HNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
Length = 257 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 1e-17
Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 17/219 (7%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA-LKR 167
L I+ I PGE +AL+G SGSGK+TL+ ++ R + G I + Y A L+R
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP-RFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI-LKEL--GLERCRHT 224
++ V+QD V+L T+ + + +R + + ++ L T
Sbjct: 407 QVALVSQD-VVLFNDTIANNIAYGR----TEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
+G + +SGG+R+R +I +L D +L+LDE TS LD+ S + L+++ + GR
Sbjct: 462 PIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GR 519
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
T + H+ S+ D+++++ +G V G E +
Sbjct: 520 TTLVIAHRLST--IEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALK 166
+L G+ S+ G ++ L+GP+G+GKTTLL+ + G LT G + A
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVEALSARAAS 76
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
RR+ V QD L + V + + R P + +R + E +ER +
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMG---RTP-HRSRFDTWTETDRAAVERAMERTGVAQF 132
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+ +SGGER+R + + +LLLDEPT+ LD + +++++++ G+T
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTA 192
Query: 287 ITTIH 291
+ IH
Sbjct: 193 VAAIH 197
|
Length = 402 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
Query: 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--PAL 165
Y H+ ++ GE +A++GPSG+GK+TLL ++ G LT G++T N + P
Sbjct: 11 YHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPPS 69
Query: 166 KRRIGFVTQDDVLLPQLTVEET--LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
+R + + Q++ L LTV + L L+L N Q+ ++ I +++G+E
Sbjct: 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL----NAAQR-EKLHAIARQMGIEDLL- 123
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
R+ G +SGG+R+R ++ ++ + +LLLDEP S LD +++ ++ +V
Sbjct: 124 ARLPG----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQV 175
|
Length = 232 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 34/189 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYNDIPYN---PALK 166
ILKG+ SI GEI A+MGP+GSGK+TL K++ G + +G+I + P +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 167 RRIG-FVT-QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK----------YARVQMILK 214
+G F+ Q + +P ++ + FLRL N R+ + + LK
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 215 ELGLERCRHTR-VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
+G++ +R V GF SGGE+KR I L+D L +LDE SGLD I
Sbjct: 136 LVGMDPSFLSRNVNEGF----SGGEKKRNEILQMALLDSELAILDETDSGLD-------I 184
Query: 274 QVLQKVAKA 282
L+ +A+
Sbjct: 185 DALKIIAEG 193
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-17
Identities = 64/228 (28%), Positives = 116/228 (50%), Gaps = 22/228 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYN--DIPY 161
K +K +T I +I A++GPSG GKTTLL+ + R+ D V+G I + DI Y
Sbjct: 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKGQDI-Y 73
Query: 162 NP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
+P ++++G V Q P +++ + + F R+ G ++ + V+ LK+
Sbjct: 74 DPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKA 130
Query: 217 GL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L + + G +SGG+++R I + V+P ++LLDEPTS LD + ++ ++
Sbjct: 131 ALWDEVKSELNKPGT--RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
L+++++ VI T + + D + + G + YG RE +E
Sbjct: 189 LEELSENYTIVIVT--HNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
|
Length = 250 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 3e-17
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGG--RLTDDVKGNITYNDIPYNPALKRR- 168
L+ + ++ G I AL+G +GSGK+TL K + G RL G I+ P AL++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNL 79
Query: 169 IGFVTQD---DVLLPQLTVEETLVFA-----AFLRLPGNMNRQQKYARVQMILKELGLER 220
+ +V Q D P L VE+ ++ +LR +RQ V L + +
Sbjct: 80 VAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQ----IVTAALARVDMVE 134
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
RH ++G +SGG++KR + I ++LLDEP +G+D + ++I +L+++
Sbjct: 135 FRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 281 KAGRTVITTIHQPSS 295
G+T++ + H S
Sbjct: 190 DEGKTMLVSTHNLGS 204
|
Length = 272 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRR 168
+L I+ I G+++AL+GPSGSGKTTLL+I+ G L G+I ++ D+ A R+
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRK 75
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
+GFV Q L +TV + + F L + R A + + L + + H +
Sbjct: 76 VGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAH--LAD 131
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
+ +SGG+++R ++ + V+P +LLLDEP LD+
Sbjct: 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-17
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLK-------------IVGG---RLTDDVKGNI 154
+LKG++ G++++++G SGSGK+T L+ +V G L D G +
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 155 TYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
D L+ R+ V Q L +TV E ++ A L +++Q+ R L
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLA 137
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
++G++ R G + +SGG+++R SI + ++P +LL DEPTS LD ++++
Sbjct: 138 KVGIDE----RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
Query: 275 VLQKVAKAGRTVITTIHQ 292
++Q++A+ G+T++ H+
Sbjct: 194 IMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-17
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 28/224 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGN-ITYNDIPYN 162
K L I +A++GP+G+GK+TL + G L ++G IT +I
Sbjct: 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR-- 74
Query: 163 PALKRRIGFVTQ---DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA--RVQMILKELG 217
+++ +G V Q D + P TVE+ + F P N+ ++ RV L LG
Sbjct: 75 -EVRKFVGLVFQNPDDQIFSP--TVEQDIAFG-----PINLGLDEETVAHRVSSALHMLG 126
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE R RV +SGGE+KR +I I ++P +L+LDEPT+GLD +LI L
Sbjct: 127 LEELR-DRVP----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 278 KVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ + G TVI + HQ + M D + ++ +G V YG E
Sbjct: 182 DLPETYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
Length = 277 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 9e-17
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 42/200 (21%)
Query: 95 VSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
+ L L + +GIT A+ G SG+GKT+L+ + G LT KG I
Sbjct: 6 FKQQLGDLCLTVNLTLPAQGIT---------AIFGRSGAGKTSLINAISG-LTRPQKGRI 55
Query: 155 TYND---------IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK 205
N I P KRRIG+V QD L P V L + M +
Sbjct: 56 VLNGRVLFDAEKGI-CLPPEKRRIGYVFQDARLFPHYKVRGNLRYG--------MAKSMV 106
Query: 206 YARVQMILKELGLE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261
A+ I+ LG+E R + +SGGE++R +IG +L P LLL+DEP
Sbjct: 107 -AQFDKIVALLGIEPLLDRYPGS---------LSGGEKQRVAIGRALLTAPELLLMDEPL 156
Query: 262 SGLDSTSANKLIQVLQKVAK 281
+ LD +L+ L+++A+
Sbjct: 157 ASLDLPRKRELLPYLERLAR 176
|
Length = 352 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA-LKR 167
L G+ ++ PGE +AL+GPSG+GK+TL +++ R D G I + + +PA L+
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE-----LGLERCR 222
R+ V QD VL +V E + + G + + L
Sbjct: 415 RMALVPQDPVLFAA-SVMENIRY-------GRPDATDEEVEAAARAAHAHEFISALPEGY 466
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
T +G + +SGG+R+R +I IL D +LLLDE TS LD+ S + Q L+
Sbjct: 467 DTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE-TLMK 524
Query: 283 GRTVITTIHQ 292
GRT + H+
Sbjct: 525 GRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 21/203 (10%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK-----GNITYN--DIPY 161
LK I I ++ AL+GPSG GK+T L+ + R+ D + G + + DI Y
Sbjct: 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLN-RMNDLIPSVKIEGEVLLDGQDI-Y 73
Query: 162 NP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
L++R+G V Q P +++ + + + R G ++++ V+ LK
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGP--RTHGIKDKKKLDEIVEKSLKGA 130
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L R+ + G+SGG+++R I + V+P +LL+DEPTS LD S K+ +++
Sbjct: 131 ALWDEVKDRLKKSAL-GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 277 QKVAKAGRTVITTIH--QPSSRM 297
Q++ K VI T H Q +SR+
Sbjct: 190 QELKKDYTIVIVT-HNMQQASRI 211
|
Length = 250 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-16
Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 50/239 (20%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIV--------GGRLTDDVKGNITY 156
D +L + I PGE + ++GPSGSGK+TL K++ G L D V I
Sbjct: 466 APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA- 524
Query: 157 NDIPYNPA-LKRRIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQ 203
+PA L+R++G V Q++VL P E ++ AA +L G +
Sbjct: 525 -----DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEH-VIHAA--KLAGAHD-- 574
Query: 204 QKYARVQMILKELGLERCRHTRVG--GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261
I L + +T VG G +SGG+R+R +I ++ +P +L+ DE T
Sbjct: 575 -------FIS---ELPQGYNTEVGEKGA---NLSGGQRQRIAIARALVGNPRILIFDEAT 621
Query: 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
S LD S +++ ++++ + GRTVI H+ S+ D+++++ +G G+ E
Sbjct: 622 SALDYESEALIMRNMREICR-GRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEE 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-16
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPA 164
D K ++ + +I GE L L+GPSG GKTT+L+++ G T D G I + DI + PA
Sbjct: 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS-GRIMLDGQDITHVPA 83
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
R + V Q L P +TV E + F LR+ + RV L+ + LE
Sbjct: 84 ENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEIT-PRVMEALRMVQLEEFAQR 140
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ +SGG+++R +I ++ P +LLLDE S LD
Sbjct: 141 K-----PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-16
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A +L+ ++D + + G++ ++ GE L + GP+GSGKTTLL+I+ G L+ + G + N
Sbjct: 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNG 61
Query: 159 IP---YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
P ++ R + ++ + L+V E L F + + +V+ L
Sbjct: 62 GPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSD-------EQVEEALAR 112
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+GL V +S G+++R ++ +L L +LDEPT+ LD + +
Sbjct: 113 VGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
Query: 276 LQKVAKAGRTVITTIHQP 293
+ G V+ T HQ
Sbjct: 168 MAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 18/178 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY---NPALKR 167
+LKGI ++ GE+ AL+G +G+GK+TL+KI+ G + D G + P PA
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAH 84
Query: 168 RIG--FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
++G V Q+ +L P L+V+E ++F LP RQ +++ +L LG + +
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLP---KRQASMQKMKQLLAALGCQLDLDSS 137
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
G + +R+ I ++ D +L+LDEPT+ L +L ++++ G
Sbjct: 138 AG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190
|
Length = 510 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALK 166
K L G++ I G+ + ++G +G+GK+TLL + G L G I + D+ K
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAK 77
Query: 167 R--RIGFVTQD--DVLLPQLTVEETLVFAAF------LRLPGNMNRQQKYARVQMILKEL 216
R + V QD P+LT+EE L A L N R++ R ++ L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN-ERRRSSFRERLARLGL 136
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GLE R+G +SGG+R+ S+ L P +LLLDE T+ LD +A ++++
Sbjct: 137 GLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 277 QKVAKAGRTVITTI 290
K+ + + +TT+
Sbjct: 192 AKIVEEHK--LTTL 203
|
Length = 263 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 33/231 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGNITYN----DI 159
+L G+ S+ GE +AL+GPSGSGK+T+L+I+ G++ V+G Y+ +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ--VEGEQLYHMPGRNG 72
Query: 160 PYNPA-------LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI 212
P PA ++ +IG V Q L P TV + + A L L M R + R +
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMEL 130
Query: 213 LKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
L +GL ++ H +SGG+++R +I + + P ++L DE TS LD +
Sbjct: 131 LDMVGLADKADH------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 272 LIQVLQKVA-KAGRTVITTIHQPSSRMFHMF-DKLLLISEGYPVYYGKARE 320
++ V++++A + T++ H+ F D++ +G V GK E
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-16
Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 31/214 (14%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YN-PAL 165
+LKG++ I GE +AL+G +G GK+TLL+++ R D +G I N P Y+ AL
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSEAAL 412
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
++ I V+Q V L T+ + L+ AA + +L+++GLE+
Sbjct: 413 RQAISVVSQR-VHLFSATLRDNLLLAAP---------NASDEALIEVLQQVGLEKLLEDD 462
Query: 226 VG-------GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
G GG + +SGGE++R I +L D LLLLDEPT GLD+ + +++++L +
Sbjct: 463 KGLNAWLGEGG--RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520
Query: 279 VAKAGRTVITTIHQPSSRMFHM--FDKLLLISEG 310
A+ +TV+ H R+ + FD++ ++ G
Sbjct: 521 HAQ-NKTVLMITH----RLTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-16
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 14/190 (7%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG--GRLTDDVK--GNITYNDIPYNPA- 164
H LK I SI E+ A++GPSG GK+T +K + ++ +VK G + YN
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 165 -----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
L++ IG V Q PQ ++ + + + R+ G N+++ V+ LK++ L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
R+ + +SGG+++R I + +P +LL+DEPTS LD S K+ +++ K+
Sbjct: 143 DEVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 280 AKAGRTVITT 289
+ VI T
Sbjct: 202 KEKYTIVIVT 211
|
Length = 259 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITY 156
L+L KH L IT SI + AL+GPSG GK+TLL+ R+ D + G+I Y
Sbjct: 12 LNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFN-RMNDLIPGCRITGDILY 70
Query: 157 NDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
N AL+R+IG V Q P+ ++ E + + R+ G N++ V+
Sbjct: 71 NGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVE 127
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
LK L R+ + +SGG+++R I + V+P ++L+DEP S LD +
Sbjct: 128 KSLKGAALWDEVKDRLHDSAL-SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
Query: 271 KLIQVLQKVAKAGRTVITTIH--QPSSR 296
K+ +++ + K TVI H Q ++R
Sbjct: 187 KIEDLIEDLKKE-YTVIIVTHNMQQAAR 213
|
Length = 253 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 23/192 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGRLTD-----DVKGNITYND 158
L IT GE L L+GPSG+GK++LL+++ G L D +
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 159 IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
I L+R +G V Q L P LTV++ L+ A R+ G +++ Q AR + +L+ L L
Sbjct: 77 IR---ELRRNVGMVFQQYNLWPHLTVQQNLIEAP-CRVLG-LSKDQALARAEKLLERLRL 131
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
F +SGG+++R +I ++++P +LL DEPT+ LD +++ ++++
Sbjct: 132 -----KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186
Query: 279 VAKAGRT-VITT 289
+A+ G T VI T
Sbjct: 187 LAETGITQVIVT 198
|
Length = 242 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----A 164
H LK + ++ PGEI AL+G +G+GK+TL+K++ G + + KG IT N+I YN A
Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLA 77
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN-------MNRQQKYARVQMILKELG 217
+ IG + Q+ ++ +LTV E L R ++ ++ R M+L +G
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVG 134
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
L+ +V +S ++ I +++D ++++DEPTS L + + L ++
Sbjct: 135 LKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189
Query: 278 KVAKAGRTVITTIHQ 292
++ K G ++ H+
Sbjct: 190 QLRKEGTAIVYISHK 204
|
Length = 510 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-16
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPA 164
D +H + ++ +I GEI AL+G SG GK+TLL+++ G G I + D+ + P
Sbjct: 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPP 88
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFL-RLPGNMNRQQKYARVQMILKELGLE---- 219
+R I + Q L P +TVE+ + F +LP + + +RV +L + ++
Sbjct: 89 YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP----KAEIASRVNEMLGLVHMQEFAK 144
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-IQVLQK 278
R H +SGG+R+R ++ + P LLLLDEP LD +++ ++V+
Sbjct: 145 RKPHQ---------LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324
+ + G T + H M M ++ +++ G V G+ E E+
Sbjct: 196 LERVGVTCVMVTHDQEEAM-TMAGRIAIMNRGKFVQIGEPEEIYEH 240
|
Length = 377 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITY 156
L+L K L I+ I + A +GPSG GK+TLL+ R+ D ++G I
Sbjct: 31 LNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRL 89
Query: 157 NDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
+ L+RR+G V Q P+ ++ E +V+ LRL G NR+ V+
Sbjct: 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGINNRRVLDEAVE 146
Query: 211 MILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
L+ L + + F G+SGG+++R I I ++P +LLLDEPTS LD S
Sbjct: 147 RSLRGAALWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST 204
Query: 270 NKLIQVLQKVAKAGRTVITTIH--QPSSRM------FHM 300
K I+ L K+ T++ H Q ++R+ +M
Sbjct: 205 LK-IEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242
|
Length = 272 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 6e-16
Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 49/184 (26%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALK 166
++ ++ + GEI+ + G G+G+T L + + G G IT + P A++
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIR 74
Query: 167 RRIGFVTQD---DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
I +V +D + L+ L+V E + ++ L
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIALSSLL----------------------------- 105
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
SGG +++ + + DP +L+LDEPT G+D + ++ ++++++A AG
Sbjct: 106 -----------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
Query: 284 RTVI 287
+ V+
Sbjct: 155 KAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 57/223 (25%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
K Y + G++ SI GE L L+G SG GK+TL +++ L + G I +
Sbjct: 23 KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFEG------- 74
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-----ER 220
D+ ++++++ RV +L+++GL R
Sbjct: 75 ---------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYR 105
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD-STSAN--KLIQVLQ 277
H +SGG+R+R I + ++P L++ DEP S LD S A L++ LQ
Sbjct: 106 YPHE---------LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ 156
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ I+ H S + ++ D++ ++ G V G E
Sbjct: 157 EELGLTYLFIS--HD-LSVVRYISDRIAVMYLGKIVEIGPTEE 196
|
Length = 268 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-16
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 17/201 (8%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A LS ++ + + ++ ++ GE L + GP+G+GKTTLL+I+ G L D G + +
Sbjct: 5 AENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQG 63
Query: 159 IPYNPALK---RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
P + + + ++ + +LT E L F + R G+ N + L +
Sbjct: 64 EPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAATIWE----ALAQ 117
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+GL VG +S G+++R ++ L L +LDEP + LD L +
Sbjct: 118 VGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTAL 172
Query: 276 L-QKVAKAGRTVITTIHQPSS 295
+ A+ G ++TT HQP
Sbjct: 173 MAAHAAQGGIVLLTT-HQPLP 192
|
Length = 209 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 104 LDKDY---KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
+ K Y + +LK ++ I G+ +A++GP+G+GK+TLLK++ G L G + +
Sbjct: 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGE-- 383
Query: 161 YNPALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
+IG+ Q D L P TV E L + + Q+ V+ L G
Sbjct: 384 -----TVKIGYFDQHRDELDPDKTVLEEL-----SEGFPDGDEQE----VRAYLGRFGFT 429
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ + +SGGE+ R + +L P+LLLLDEPT+ LD S L + L
Sbjct: 430 GEDQEKP----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF 485
Query: 280 AKAGRTVITTIHQPSSRMF--HMFDKLLLISEGYPVYYG 316
G TV+ H R F + ++ L+ + + G
Sbjct: 486 --EG-TVLLVSH---DRYFLDRVATRIWLVEDKVEEFEG 518
|
Length = 530 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 1e-15
Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 102 LSLDKDYKH-----ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG--RLTDDVKGNI 154
LS DK H L ++ I GEI+ L+G +G+GKTTLL + G R T G I
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRI 62
Query: 155 TY--NDI---PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
+ DI ++ + V + + ++TVEE L F Q++ V
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWV 120
Query: 210 QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
+ L ER R R G +SGGE++ +IG ++ P LLLLDEP+ GL
Sbjct: 121 YELFPRL-HER-RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
Query: 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313
++ ++++ + G T I + Q +++ + D+ ++ G+ V
Sbjct: 174 QQIFDTIEQLREQGMT-IFLVEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-15
Identities = 48/206 (23%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFV 172
++ GEIL + G G+G+T L + + G G I + P A+K I +V
Sbjct: 281 TVRAGEILGIAGLVGAGRTELARALFGARPASS-GEILLDGKPVRIRSPRDAIKAGIAYV 339
Query: 173 TQD---DVLLPQLTVEETLVFAAFLRL--PGNMNRQQKYARVQMILKELGLERCRHTRVG 227
+D + L+ +++ E + A+ R G ++R+++ A + ++ L + +
Sbjct: 340 PEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSPEQP 398
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
I +SGG +++ + + DP +L+LDEPT G+D + ++ ++++++A G+ ++
Sbjct: 399 ---IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
Query: 288 TTIHQPSSRM---FHMFDKLLLISEG 310
SS + + D++L++ EG
Sbjct: 456 MI----SSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 2e-15
Identities = 64/237 (27%), Positives = 116/237 (48%), Gaps = 27/237 (11%)
Query: 104 LDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD----VKGNITYN 157
L K + L + +I GE++AL+GPSGSGK+TLL+ + G +T D +
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69
Query: 158 DIPYNPALKRRI-------GFVTQDDVLLPQLTVEETLVFAAFLRLP------GNMNRQQ 204
+ L R I G++ Q L+ +L+V E ++ A P R+Q
Sbjct: 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ 129
Query: 205 KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264
K +Q L +G+ H RV +SGG+++R +I ++ ++L DEP + L
Sbjct: 130 KQRALQA-LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
D SA ++ L+ + + G TV+ T+HQ + + ++++ + +G+ Y G +++
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC-ERIVALRQGHVFYDGSSQQ 239
|
Length = 262 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 22/187 (11%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTL-LKIVGGRLTDDVKGNITYNDIPYNP-- 163
D+ + GI+ ++ G+ L L+G SGSGK+TL L ++ RL +G I ++ +
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RL-IPSQGEIRFDGQDIDGLS 354
Query: 164 -----ALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKE 215
L+RR+ V QD L P++TV + + LR+ ++ ++ RV L+E
Sbjct: 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEALEE 412
Query: 216 LGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+GL R+ R F SGG+R+R +I +++ P L+LLDEPTS LD + +++
Sbjct: 413 VGLDPATRN-RYPHEF----SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467
Query: 275 VLQKVAK 281
+L+ + +
Sbjct: 468 LLRDLQQ 474
|
Length = 534 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 2e-15
Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 65/183 (35%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----A 164
L G++ S+ GE+ AL+G +G+GK+TL+KI+ G D G I + + A
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDA 72
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+ I V QL+V E +Q I + L
Sbjct: 73 RRAGIAMV-------YQLSVGE----------------RQMVE----IARAL-------- 97
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
+ LL+LDEPT+ L +L +V++++ G
Sbjct: 98 ------------------------ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGV 133
Query: 285 TVI 287
VI
Sbjct: 134 AVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 26/202 (12%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK-----GNITYN--DIPYN 162
H LKG++ I + AL+GPSG GK+T L+ + R+ D +K G++ + DI Y
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN-RMNDRIKAARIDGSVELDGQDI-YQ 116
Query: 163 PA-----LKRRIGFVTQDDVLLPQLTVEETLVFAA----------FLRLPGNMNRQQKYA 207
L++R+G V Q P+ ++ E + + RL G ++ +
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
V+ L++ L + R+ + G+SGG+++R I + VDP ++L+DEP S LD
Sbjct: 176 LVERSLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 268 SANKLIQVLQKVAKAGRTVITT 289
+ +K+ +++++A+ V+ T
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVT 256
|
Length = 305 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIPYNPA------LKR-- 167
I GEI LMG SGSGK+TLL+ V G L +G + D + A L+R
Sbjct: 46 DIEEGEICVLMGLSGSGKSTLLRAVNG-LNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 168 --RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
R+ V Q LLP TVEE + F L + G M + ++ RV L+ +GL + +
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFG--LEMQG-MPKAERRKRVDEQLELVGLAQWADRK 161
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI-QVLQKVAKAGR 284
G +SGG ++R + + +LL+DEP S LD +L ++L+ +K +
Sbjct: 162 PG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK 216
Query: 285 TVITTIH 291
T++ H
Sbjct: 217 TIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 23/199 (11%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----PALK 166
L I+ G++ ALMG +G+GK+TLLKI+ G D G+I + AL
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA-GSILIDGQEMRFASTTAALA 78
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFL-RLP---GNMNRQQKYARVQMILKELGLERCR 222
+ + Q+ L+P++TV E L +L +LP G +NR+ + L+ LG++
Sbjct: 79 AGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
T + K +S G+R+ I + + ++ DEPTS L + +L +V++++
Sbjct: 135 DTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE 189
Query: 283 GRTVITTIHQPSSRMFHMF 301
GR ++ H RM +F
Sbjct: 190 GRVILYVSH----RMEEIF 204
|
Length = 501 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 28/235 (11%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN- 157
S++S + I+ G+ + PG + L+GP+GSGK+TLL+++ G L D G +
Sbjct: 4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAG 62
Query: 158 -DIPYNPALKR--RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN----MNRQQKYARVQ 210
D+ R R+ V QD LTV + + A R+P + A V
Sbjct: 63 VDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVVD 119
Query: 211 MILKELGLE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
L L R T +SGGER+R + + +P LLLLDEPT+ LD
Sbjct: 120 RALARTELSHLADRDMST---------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
Query: 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF-DKLLLISEGYPVYYGKARE 320
+ + + +++++A G TV+ +H + + D ++++ G V G RE
Sbjct: 171 RAQLETLALVRELAATGVTVVAALHDLNLAA--SYCDHVVVLDGGRVVAAGPPRE 223
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA- 164
KD LKG++ SI G AL+GP+G+GK+TLL + G +G + N
Sbjct: 15 KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAEN 73
Query: 165 ---LKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNM--NRQQKYARVQMILKELGL 218
++ ++G V QD D + TV + + F P NM ++ + RV+ LK + +
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-----PVNMGLDKDEVERRVEEALKAVRM 128
Query: 219 ERCRHTRVGGGFIKG---ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
R K +S G++KR +I + +DP +++LDEP + LD L+++
Sbjct: 129 WDFRD--------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180
Query: 276 LQKVAKAGRTVITTIH 291
L ++ G+TVI H
Sbjct: 181 LDRLHNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNP 163
K +KGI +I AL+GPSGSGK+T L+ + R+ D V G I Y I N
Sbjct: 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLN-RMNDTIDIARVTGQILYRGIDINR 91
Query: 164 A------LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
+++ IG V Q + ++ E + FA L G +++ V+ LK+
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAK-SIYENITFA--LERAGVKDKKVLDEIVETSLKQAA 148
Query: 218 L-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L ++ + +SGG+++R I I V P +LL+DEP S LD S +L + +
Sbjct: 149 LWDQVKDDLHKSAL--TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 277 QKVAKAGRTVITTIH--QPSSR 296
++ K T+I H Q ++R
Sbjct: 207 FEL-KKNYTIIIVTHNMQQAAR 227
|
Length = 267 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 28/218 (12%)
Query: 89 NPVKSVVSKVASQLSLDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146
+P S V L+ Y + L ++ I ++ A++GPSG GK+T L+ + R+
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN-RM 88
Query: 147 TD-----DVKGNITYN-----DIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195
D V+G +T+ D +P AL+RRIG V Q P+ ++ + + + L+
Sbjct: 89 NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LK 145
Query: 196 L---PGNMNRQQKYARVQMILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251
+ G+++ RV+ L+ L + + G +SGG+++R I I D
Sbjct: 146 IQGYDGDID-----ERVEESLRRAALWDEVKDQLDSSGL--DLSGGQQQRLCIARAIAPD 198
Query: 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITT 289
P ++L+DEP S LD + +K+ +++++A+ VI T
Sbjct: 199 PEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVT 236
|
Length = 285 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-15
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGN 153
+S + L LKGI EI AL+GPSG GK+T L+ + R+ D + GN
Sbjct: 8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN-RMNDLIPGVTITGN 66
Query: 154 ITY--NDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY 206
++ +I Y P L++++G V Q P ++ E +++ LRL G ++
Sbjct: 67 VSLRGQNI-YAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLD 122
Query: 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
V+ LK+ + + + +SGG+++R I + V P ++LLDEPTS LD
Sbjct: 123 EAVETSLKQAAIWDEVKDHLHESALS-LSGGQQQRVCIARVLAVKPDVILLDEPTSALDP 181
Query: 267 TSANKLIQVLQKVAKAGRTVITT--IHQPS 294
S+ ++ +L ++ ++ T +HQ S
Sbjct: 182 ISSTQIENMLLELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 4e-15
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 20/239 (8%)
Query: 92 KSVVSKVASQLSLDKDYKHI-LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150
K + ++ + L+K + +K + +I GEI +MG SGSGK+T+++++ RL +
Sbjct: 23 KYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPT 81
Query: 151 KGNITYN--------DIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNR 202
+G + + D +++I V Q L+P +TV + F L R
Sbjct: 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER 141
Query: 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262
++K L+++GLE H + +SGG R+R + + ++P +LL+DE S
Sbjct: 142 REKALDA---LRQVGLENYAH-----SYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
Query: 263 GLDSTSANKLIQVLQKV-AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
LD ++ L K+ AK RT++ H M + D++ ++ G V G E
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM-RIGDRIAIMQNGEVVQVGTPDE 251
|
Length = 400 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 4e-15
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 18/210 (8%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNIT 155
QL++ H +K ++ + A++GPSG GK+T+L+ + R+ D V G I
Sbjct: 9 QLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN-RMHDLVPSARVTGKIL 67
Query: 156 YNDIPY-----NP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
+D +P +++RR+G V Q P +++ + ++ A +L G +NR + V
Sbjct: 68 LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIV 125
Query: 210 QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
+ LK + L R+ ++ +SGG+++R I I V P ++L+DEP S LD S
Sbjct: 126 ESSLKRVALWDEVKDRLKSNAME-LSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184
Query: 270 NKLIQVLQKVAKAGRTVITTIH--QPSSRM 297
K+ ++++++ K T+I H Q ++R+
Sbjct: 185 LKIEELIEEL-KEKYTIIIVTHNMQQAARV 213
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 5e-15
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 38/226 (16%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A L+ ++D + + G++ ++ GE++ + GP+G+GKT+LL+I+ G L G + +
Sbjct: 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQG 62
Query: 159 IPYNPALKRRIGFVTQDDVLL--------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
P RR D+L +LT E L F RL G + + +
Sbjct: 63 EPI-----RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ--RLHGPGDDEA----LW 111
Query: 211 MILKELGLER-----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
L ++GL R +S G+++R ++ L L +LDEP + +D
Sbjct: 112 EALAQVGLAGFEDVPVRQ----------LSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
Query: 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311
+L +L + A+ G VI T HQ + DK+ + G
Sbjct: 162 KQGVARLEALLAQHAEQGGMVILTTHQD---LPVASDKVRKLRLGQ 204
|
Length = 204 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-15
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 21/214 (9%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-------TYNDIPYNP 163
+L+ ++ S+ GE + L GPSGSGK+TLL+ + D +G I + + P
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILVRHEGEWVDLVTAEP 84
Query: 164 ----ALKRR-IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
++R IG+V+Q ++P+++ L A L + R+ A+ +L L L
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRLNL 141
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
+ F SGGE++R +I +VD +LLLDEPT+ LD+T+ +++++++
Sbjct: 142 PERLWSLAPATF----SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312
G ++ H R + D+LL +S P
Sbjct: 198 AKARGAALVGIFHDEEVRE-AVADRLLDVSAFSP 230
|
Length = 235 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 8e-15
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 33/252 (13%)
Query: 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMG 129
++ E+V K S S ++ + LK ++ + GE + L+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGE-----VGEFWALKDVSFEVPRGERIGLIG 55
Query: 130 PSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV 184
+G+GK+TLL+++ G D V+G ++ L GF P+LT
Sbjct: 56 RNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS-------SLLGLGGGF-------NPELTG 101
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI 244
E + L ++R++ ++ I++ L V K S G + R +
Sbjct: 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAF 153
Query: 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304
++P +LL+DE + D+ K + L+++ K G+TVI H PSS + + D+
Sbjct: 154 AIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRA 212
Query: 305 LLISEGYPVYYG 316
L++ +G + G
Sbjct: 213 LVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-15
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-------VK 151
A L + + ++ IL+ ++ I PG + AL+G +G+GK+TLLK + G LT V
Sbjct: 4 ADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63
Query: 152 GNITYNDIPYN----PALKRRIGFVTQDDVLLPQ-------LTVEETLVFAAFLRLPGNM 200
G++T N P P L R +LPQ + E ++ R P +
Sbjct: 64 GDVTLNGEPLAAIDAPRLARL-------RAVLPQAAQPAFAFSAREIVLLG---RYP-HA 112
Query: 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG---------YEILVD 251
R + L T + G + +SGGE R ++
Sbjct: 113 RRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172
Query: 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT-VITTIHQPSSRMFHMFDKLLLISEG 310
P LLLDEPT+ LD ++L+ ++++A+ V+ +H P+ H D++ ++++G
Sbjct: 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADG 231
Query: 311 YPVYYGKARESM 322
V +G + +
Sbjct: 232 AIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 1e-14
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-----KGNITYN--DI 159
D HILK + I + AL+GPSG GK+T ++ + R+ D + +G+I + DI
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDI 72
Query: 160 PYNPA-----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
Y+PA L++++G V Q P+ + A LR+ G + RV+ LK
Sbjct: 73 -YDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV---AYGLRIHGEDDEDFIEERVEESLK 128
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
L ++ + G+SGG+++R I I V P ++L+DEP S LD S K+
Sbjct: 129 AAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187
Query: 275 VLQKVAKAGRTVITT 289
++ K+ + VI T
Sbjct: 188 LIHKLKEDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 16/225 (7%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG--------GRLTDDVK--GNITYNDI 159
H++KG+ I + ALMGPSG GK+TLL+ R+ +V+ G Y+
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY-ARVQMILKELGL 218
++R +G V Q P LT+ + + A ++L G + +++ RV+ LK+ L
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKELDERVEWALKKAAL 135
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
R+ + +SGG+R+R I + + P +LL+DEPT+ +D K+ ++L +
Sbjct: 136 WDEVKDRLND-YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+ K T++ H P ++ + D + + G + G R+ E
Sbjct: 195 L-KKEYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 33/210 (15%)
Query: 104 LDKDYKHIL--KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K Y + ++ + PGE+L ++G SGSGK+TLL + GRL D G TY
Sbjct: 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-HGTATYIMRSG 67
Query: 162 NP--------ALKRRI-----GFVTQD--DVLLPQLT----VEETLVFAAFLRLPGNMNR 202
A +RR+ GFV Q+ D L +++ + E L+ A R GN+
Sbjct: 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNIR- 125
Query: 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262
A Q L+E+ ++ R + F SGG ++R I ++ P L+ +DEPT
Sbjct: 126 ----ATAQDWLEEVEIDPTRIDDLPRAF----SGGMQQRLQIARNLVTRPRLVFMDEPTG 177
Query: 263 GLDSTSANKLIQVLQK-VAKAGRTVITTIH 291
GLD + +L+ +L+ V G VI H
Sbjct: 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 16/214 (7%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YN 162
K +L ++ SI GE + L+G SG GK+TL +++ G L +G +++ +
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDLYQLD 79
Query: 163 P----ALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
A +R + V QD + P++TV + + LR +++ ++ AR+ +L +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMV 137
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GL R + +SGG+ +R +I + V P L++LDE S LD ++++L
Sbjct: 138 GL-RSEDAD---KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+K+ +A T I + ++ ++ +G
Sbjct: 194 RKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 17/191 (8%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK--------IVGGRLTDDV--KGNITYNDI 159
LK I I ++ AL+GPSG GK+TLL+ I G ++T + G Y +I
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
L+ ++G V Q P +++ E + + LR G +++ V+ L+ L
Sbjct: 77 DVA-DLRIKVGMVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 220 RCRHTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
R+ F G+SGG+++R I I ++P ++L+DEPTS LD + +K+ +++++
Sbjct: 133 DEVKDRLKSHAF--GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 279 VAKAGRTVITT 289
+ K VI T
Sbjct: 191 LKKNYTIVIVT 201
|
Length = 249 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 1e-14
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 123 EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY--NDIPYN-PALKRRIGFVTQDDVLL 179
+I A +G +G+GKTT L I+ G L G + DI N A+++ +G Q ++L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTG-LLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQM--ILKELGLERCRHTRVGGGFIKGISGG 237
LTV E ++F A L+ R + A+++M +L++ GL R+ + +SGG
Sbjct: 1016 HHLTVAEHILFYAQLK-----GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065
Query: 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297
+++ S+ + D +++LDEPTSG+D S + +L K ++GRT+I + H
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEAD 1124
Query: 298 FHMFDKLLLISEG 310
+ D++ +IS+G
Sbjct: 1125 L-LGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 41/218 (18%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALK 166
+LK I+ SI PGE + ++G +GSGK++LL + RL + G+I + + + L+
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLL-LALFRLVELSSGSILIDGVDISKIGLHDLR 77
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY---------ARVQM---ILK 214
RI + QD VL F+ +R N++ +Y RV + +
Sbjct: 78 SRISIIPQDPVL-----------FSGTIRS--NLDPFGEYSDEELWQALERVGLKEFVES 124
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
G G S G+R+ + +L +L+LDE T+ +D + + +
Sbjct: 125 LPGGLDTVVEEGGENL----SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 275 VLQKVAKAGRTVITTIHQPSSRMFHM--FDKLLLISEG 310
+++ A TV+T H R+ + D++L++ +G
Sbjct: 181 TIRE-AFKDCTVLTIAH----RLDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-14
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 14/219 (6%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYN--DIPYNP 163
+L G+ I I ALMGPSGSGK+TLL++ RL + V G + + DI
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 164 A--LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
L+RR+ V Q +P L++ E + L ++++ RV+ L++ L
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKELQERVRWALEKAQLWDE 135
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
R+ K +SGG+++R I + P +LL DEPT+ LD + K+ + ++ K
Sbjct: 136 VKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK 194
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
T++ H P + + D + + +G V +G RE
Sbjct: 195 D-MTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTRE 231
|
Length = 250 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-14
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY--NDIPY----- 161
+ L+G+T + PGE+ L G SG+GK+TLLK++ G + G I + +DI
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNRE 73
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ER 220
P L+R+IG + QD LL TV + + A L + G + RV L ++GL ++
Sbjct: 74 VPFLRRQIGMIFQDHHLLMDRTVYDNV--AIPLIIAGASGDDIR-RRVSAALDKVGLLDK 130
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
++ F +SGGE++R I ++ P++LL DEPT LD + ++++ ++
Sbjct: 131 AKN------FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 281 KAGRTVITTIH 291
+ G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 1e-14
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK--------IVGGRLTDDVK--GNITYNDI 159
H LKGI+ I ++A +GPSG GK+T L+ I RL +++ G Y+
Sbjct: 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL- 218
L++ +G V Q P+ ++ E + + LR+ G + RV+ LK L
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAALW 133
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
+ + F +SGG+++R I + V PS+LL+DEP S LD S K+ +++ +
Sbjct: 134 DEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 279 VAKAGRTVITT 289
+ K VI T
Sbjct: 192 LKKDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 27/160 (16%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
+ +L ++ + PG+IL L+GP+G+GK+TL+++V G + D +G I N K R
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNG-------KLR 68
Query: 169 IGFVTQD---DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
IG+V Q D LP LTV FLRL ++ IL L+R +
Sbjct: 69 IGYVPQKLYLDTTLP-LTVNR------FLRLRPGTKKED-------ILP--ALKRVQAGH 112
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ ++ +SGGE +R + +L P LL+LDEPT G+D
Sbjct: 113 LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 31/265 (11%)
Query: 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMG 129
+K +V K RI S S +K + +A + LK I+ I GE + ++G
Sbjct: 4 IKVSNVSKKFRIYHEKSYS--LKKRLKGLAKGGRKVAE-FWALKDISFEIYKGERVGIIG 60
Query: 130 PSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV 184
+G+GK+TLLK++ G V G + GF P+LT
Sbjct: 61 HNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP---LIELG----AGFD-------PELTG 106
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI 244
E + + G + R++ +V I++ L V K S G R +
Sbjct: 107 RENIYLRG--LILG-LTRKEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAF 158
Query: 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304
V+P +LLLDE + D+ K ++ L ++ + +T++ H + + D+
Sbjct: 159 SVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGA-IKQYCDRA 217
Query: 305 LLISEGYPVYYGKARESMEYFSSLG 329
+ + G G E + +
Sbjct: 218 IWLEHGQIRMEGSPEEVIPAYEEDL 242
|
Length = 249 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNPALK 166
L ++ S+ PGE+ L+GP+G+GKTTL+ ++ G+ G+ +P + +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAA------FLRLPGNMNRQQKYARVQMILKELGLER 220
IG Q + LTV E L A F L + +++ R+ +L +GL
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEER-RRIDELLATIGLGD 139
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
R +S G+++ IG + DP LLLLDEP +G+ K ++L+ +A
Sbjct: 140 ERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 281 KAGRTVITTIH 291
+++ H
Sbjct: 195 G-KHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 4e-14
Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 21/240 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNPALK 166
L+ I I GE + ++G +GSGK+TL + G L V G I D ++
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG-IDTGDFSKLQGIR 76
Query: 167 RRIGFVTQD-DVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+ +G V Q+ + TVEE L F L LP R+ RV L E+GLE+ RH
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK----RVDRALAEIGLEKYRHR 132
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
K +SGG+ + ++ + ++P L+ DE TS LD S +++ ++K+ + G+
Sbjct: 133 SP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS--SLGFIPEIAMNPAEFL 342
T++ H H D+++++ G V G+ + S +LG P + AE L
Sbjct: 188 TIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENL 245
|
Length = 274 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 4e-14
Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 19/199 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYNDIP-YNP-- 163
L I+ ++ AL+GPSG GK+T L+ + R+ D V+G I + Y+P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLN-RMNDLIPGARVEGEILLDGENIYDPHV 80
Query: 164 ---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
L+RR+G V Q P+ ++ E + + LR+ G ++ RV+ L+ L
Sbjct: 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
R+ + G+SGG+++R I + V+P +LL+DEP S LD + K I+ L
Sbjct: 138 EVKDRLHESAL-GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK-IEELIHEL 195
Query: 281 KAGRTVITTIH--QPSSRM 297
KA T+I H Q ++R+
Sbjct: 196 KARYTIIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 7e-14
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 24/183 (13%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY----NPALKRRIGFVTQDD 176
G++ L+G +GSGK+TLLK++G R +G I + P + A R++ ++ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQ- 93
Query: 177 VLLPQ---LTVEETLVFAAFLRLP--GNMNR--QQKYARVQMILKELGLERCRHTRVGGG 229
LP +TV E LV A R P G + R +V+ + +GL+ H V
Sbjct: 94 --LPAAEGMTVRE-LV--AIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV--- 145
Query: 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVIT 288
+SGGER+R I + D LLLDEPTS LD ++ ++ ++++ G TVI
Sbjct: 146 --DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203
Query: 289 TIH 291
+H
Sbjct: 204 VLH 206
|
Length = 265 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIV--------GGRLTDDVK---GNITYND 158
H LK I I ++ A +GPSG GK+TLL+ R ++ NI
Sbjct: 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86
Query: 159 IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
L+ ++G V Q P +++ + + F +RL ++R + RV+ L + L
Sbjct: 87 QDIA-LLRAKVGMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAAL 142
Query: 219 ERCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
++ G+ +SGG+++R I I + P +LLLDEP S LD S ++ +++
Sbjct: 143 WNEVKDKLHQSGY--SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200
Query: 278 KVAKAGRTVITTIH 291
++ K TV+ H
Sbjct: 201 EL-KQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 8e-14
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 26/189 (13%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKT----TLLKIVGGRLTDDVKGNITYNDIPY----N 162
+KGI+ I GE LAL+G SGSGK+ ++L ++ G+I ++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 163 PALKR----RIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
L+ +IG + Q+ + L P T+ + L LRL ++R AR +L+ +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARALELLELV 142
Query: 217 GLERCRHTRVGGGFIKG----ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
G+ + +SGG+R+R I + +P LL+ DEPT+ LD T ++
Sbjct: 143 GI------PEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQI 196
Query: 273 IQVLQKVAK 281
+ +L+++
Sbjct: 197 LDLLKELQA 205
|
Length = 534 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 39/250 (15%)
Query: 89 NPVKSVVSKVASQLSLDKDYKH-----ILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143
NP+ + L D K L I+ + +I ++G SGSGK+TL+
Sbjct: 14 NPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFN 73
Query: 144 GRLTDDVKGNITYNDIPYNP--------------------ALKRRIGFVTQ-DDVLLPQL 182
G + G I DI L+RR+ V Q + L +
Sbjct: 74 GLIKSK-YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132
Query: 183 TVEETLVFAAF-LRLPGNMNRQQ-KYARVQMILKELGLERCRHTRVGGGFIKGISGGERK 240
T+E+ ++F L + + ++ K+ +M L + LER G+SGG+++
Sbjct: 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF---------GLSGGQKR 183
Query: 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300
R +I + + P +L+ DEPT+GLD ++++Q++ +TV H + +
Sbjct: 184 RVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT-MEHVLEV 242
Query: 301 FDKLLLISEG 310
D+++++ +G
Sbjct: 243 ADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-13
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 90 PVKSVVSKVASQLS-LDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148
V+ A L L D K + + ++ G+ +AL+GPSG+GKT+LL + G L
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP- 401
Query: 149 DVKGNITYNDIPYN----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ 204
+G++ N I + ++ + +V Q+ LP T+ + ++ + + +Q
Sbjct: 402 -YQGSLKINGIELRELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGNP-----DASDEQ 454
Query: 205 -----KYARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257
+ A V L L GL T +G G+S G+ +R ++ +L LLLL
Sbjct: 455 LQQALENAWVSEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLL 509
Query: 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
DEPT+ LD+ S ++Q L A +T + HQ
Sbjct: 510 DEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTHQ 543
|
Length = 588 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-13
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK-----GNITY-NDIPYNP-- 163
L GI+ E+ AL+GPSG GK+T L+ + R+ DD++ G I + Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 164 ---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
L++ +G V Q P +V + + + L++ G +++ RV+ LK+ + +
Sbjct: 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWK 135
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+ + SGG+++R I + V P ++LLDEPTS LD S++++ + L ++
Sbjct: 136 ETKDNLDRN-AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL- 193
Query: 281 KAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVYYGKARE 320
K T I H Q + R + D+ + G + G E
Sbjct: 194 KHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIEAGPTEE 232
|
Length = 251 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (175), Expect = 1e-13
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A L+L K +L ++ + +LMGP+GSGKTT L+ + R+ D V G D
Sbjct: 24 AVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN-RMNDKVSGYRYSGD 82
Query: 159 I--------PYNPAL--KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR 208
+ Y L +RR+G + Q P ++ L A +R + R++
Sbjct: 83 VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGV 139
Query: 209 VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268
Q L E+GL R+ + +SGG+++ + + V+P +LLLDEPTS LD T+
Sbjct: 140 AQARLTEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198
Query: 269 ANKLIQVLQKVAKAGRTVITT 289
K+ + ++ +A +I T
Sbjct: 199 TEKIEEFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
+S + + I I+ ++ G+I A+MGPSG GKTTLL+++GG++ D G I ++ +I
Sbjct: 13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENI 71
Query: 160 PYNPALKR--------RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211
PA+ R R+ + Q L + V + + + LR + ++ V M
Sbjct: 72 ---PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHSTVMM 126
Query: 212 ILKELGLERCRHTRVGGGFIK--GISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
L+ +GL G + +SGG +R ++ I ++P L++ DEP G D +
Sbjct: 127 KLEAVGLR-------GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179
Query: 270 NKLIQVLQKVAKA-GRTVITTIH 291
L++++ ++ A G T + H
Sbjct: 180 GVLVKLISELNSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 1e-13
Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 123 EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYN-------PALKRRIGFVTQ 174
++ ++G +GSGK+T++++ G + + I + IP N L++ IG V Q
Sbjct: 38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQ 97
Query: 175 -DDVLLPQLTVEETLVFAAFLRLPGNM--NRQQKYARVQMILKELGLERCRHTRVGGGFI 231
+ L Q T+E+ + F P N+ N+Q+ Y +V +LK + L R F
Sbjct: 98 FPEYQLFQETIEKDIAFG-----PVNLGENKQEAYKKVPELLKLVQLPEDYVKR--SPF- 149
Query: 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
+SGG+++R ++ I +D + L+LDEPT GLD I + +++ K + I +
Sbjct: 150 -ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208
Query: 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNP 338
++ + D+++++ EG + G E FS+ + +I ++P
Sbjct: 209 HNMDQVLRIADEVIVMHEGKVISIG---SPFEIFSNQELLTKIEIDP 252
|
Length = 289 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 38/210 (18%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLK--------IVGGRLTDDVKGNITY--NDI 159
H ++ + +I P + A +GPSG GK+T+L+ I G R V+G + D+
Sbjct: 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR----VEGEVLLDGEDL 73
Query: 160 PYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
Y P A++R IG V Q P +++ + +V A L+L G N++ V+ L+
Sbjct: 74 -YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLR 130
Query: 215 ELGL---ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD--STSA 269
L + R + GGG +SGG+++R I I V+P +LL+DEP S LD ST A
Sbjct: 131 GANLWNEVKDRLDKPGGG----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 270 -NKLIQVLQKVAKAGRTVITTIH--QPSSR 296
LI L K T++ H Q ++R
Sbjct: 187 IEDLINEL----KQDYTIVIVTHNMQQAAR 212
|
Length = 258 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 25/244 (10%)
Query: 95 VSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----D 149
+ L+L K IL I I E+ A +GPSG GK+T L+ R+ D
Sbjct: 4 IHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFN-RMNDFVPNCK 62
Query: 150 VKGNITYNDIP-YNPA-----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQ 203
VKG + + I Y+ L+ ++G V Q P+ ++ + + + +L G +
Sbjct: 63 VKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGP--KLHGLAKNK 119
Query: 204 QKYAR-VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262
+K V+ L +GL R+ + +SGG+++R I I V P++LL+DEP S
Sbjct: 120 KKLDEIVEKSLTSVGLWEELGDRLKDSAFE-LSGGQQQRLCIARAIAVKPTMLLMDEPCS 178
Query: 263 GLDSTSAN---KLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319
LD + N LIQ L+K I + + + D++ G V Y +
Sbjct: 179 ALDPVATNVIENLIQELKK-----NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233
Query: 320 ESME 323
E +
Sbjct: 234 EIFK 237
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-13
Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 78 KVRINKAASDSNPVKSVVSKVASQLSLDKDYKHI-LKGITGSICPGEILALMGPSGSGKT 136
+R+ K S V V +V LS+ +K ++ + GEI+ + G +G+G++
Sbjct: 243 VLRVVKPPSTPGEV---VLEVED-LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQS 298
Query: 137 TLLK-IVGGRLTDDVKGNITYNDIPY---NPALKRR---IGFVTQD---DVLLPQLTVEE 186
L++ I G R G I N +RR + +V +D L+ L++ E
Sbjct: 299 ELVEAISGLRKPA--SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAE 356
Query: 187 TLVFAAFLRLP----GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRT 242
LV + P G ++R+ + +++E + R + +SGG +++
Sbjct: 357 NLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV-RAPSPDAP---ARSLSGGNQQKL 412
Query: 243 SIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
+ E+ P LL+ +PT GLD + + + L ++ AG+ V+
Sbjct: 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 45/212 (21%), Positives = 96/212 (45%), Gaps = 43/212 (20%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPA------ 164
L ++ I GE +A++G +GSGKTT ++ + L D + D
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 165 --------------------LKRRIGFVTQ-DDVLLPQLTVEETLVFAAFLRLPGNMNRQ 203
++RR+G V Q + L + T+E+ ++F + ++++
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VSMGVSKE 139
Query: 204 QKYARVQMILKELGLERCRHTRVGGGFIK----GISGGERKRTSIGYEILVDPSLLLLDE 259
+ R ++ +GL+ +++ +SGG+++R ++ + ++P L+ DE
Sbjct: 140 EAKKRAAKYIELVGLDE--------SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDE 191
Query: 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
PT+GLD +++++ + K G+T+I H
Sbjct: 192 PTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-13
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 52/217 (23%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PA 164
K ILK I+ S PG + ++G +G+GK+TLL+I+ G D +N PA
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------------DKEFNGEARPA 65
Query: 165 LKRRIGFVTQDDVLLPQLTVEETL----------------VFAAFLRLPGNMNR-QQKYA 207
++G++ Q+ L P TV E + + A F +M+ + A
Sbjct: 66 PGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQA 125
Query: 208 RVQMILKELG-------LE------RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254
+Q I+ LE RC + +SGGER+R ++ +L P +
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
LLLDEPT+ LD+ S L Q LQ+ TV+ H
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHLQEYPG---TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 6e-13
Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-----IPYNPALKRRIGFV 172
+ PGE+ ++GP+G+GKTT++ ++ G+ D +G++ + +P + + IG
Sbjct: 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTGLPEHQIARAGIGRK 82
Query: 173 TQDDVLLPQLTVEETLVFAA------FLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
Q + LTV E L A F L ++ ++K R++ +L+ +GL
Sbjct: 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEK-DRIEEVLETIGLADEADRLA 141
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
G +S G+++ IG ++ DP LLLLDEP +G+ K ++L+ +A +V
Sbjct: 142 G-----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSV 195
Query: 287 ITTIH 291
+ H
Sbjct: 196 VVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 38/185 (20%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG--RLTDDVKGNITYNDIPYN---PAL 165
++KGI + GE + L+GPSG GK+TLL++V G R+T G I N PA
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPA- 74
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-----R 220
R I V Q+ L P ++V E + + L++ G M + + RV + L LE +
Sbjct: 75 DRDIAMVFQNYALYPHMSVRENMAYG--LKIRG-MPKAEIEERVAEAARILELEPLLDRK 131
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-------I 273
R +SGG+R+R ++G I+ +P++ L DEP S LD+ KL I
Sbjct: 132 PRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA----KLRVQMRLEI 177
Query: 274 QVLQK 278
Q L +
Sbjct: 178 QRLHR 182
|
Length = 356 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 31/191 (16%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRI--- 169
PGE+L ++G SGSGKTTLLK + GRLT D G +TY P A +RR+
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAERRRLLRT 89
Query: 170 --GFVTQD--DVLLPQLT----VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
GFV Q+ D L Q++ + E L+ A R GN+ A Q L+E+ ++
Sbjct: 90 EWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIR-----AEAQDWLEEVEIDLD 143
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK-VA 280
R + F SGG ++R I ++ P L+ +DEPT GLD + +L+ +L+ V
Sbjct: 144 RIDDLPRTF----SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199
Query: 281 KAGRTVITTIH 291
+ G V+ H
Sbjct: 200 ELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----- 163
+ +L ++ S+ GE +AL+G SG GK+TL +++ G L +GN+++ P
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPSQGNVSWRGEPLAKLNRAQ 83
Query: 164 --ALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
A +R I V QD + + P+ TV E + LR ++++ ++ AR +L+ + L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
+ +SGG+ +R + + V+P LL+LDE S LD +I++L+K
Sbjct: 142 DSVLDKRPP----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196
|
Length = 268 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 51/191 (26%), Positives = 101/191 (52%), Gaps = 25/191 (13%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LKR 167
LK ++ S+ GE +A++G +GSGK+TL K++ G L + G IT + + ++R
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWDVRR 81
Query: 168 RIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGN-MNRQQKYARVQMILKELGLERCRHTR 225
++G V Q+ D TV++ + F L + R++ RV L+++G+E
Sbjct: 82 QVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVERVDQALRQVGMED----- 132
Query: 226 VGGGFIK----GISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
F+ +SGG+++R +I + + P +++LDE TS LD ++++ ++++ +
Sbjct: 133 ----FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188
Query: 282 AGR-TVITTIH 291
TV++ H
Sbjct: 189 QKGITVLSITH 199
|
Length = 279 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 25/237 (10%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLK--------IVGGRLTDDV---KGNITYN 157
K L I I +I AL+GPSG GK+T L+ I ++ +V NI
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 158 DIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
D+ L++R+G V Q P +++ + + + R+ G ++++ V+ LK+
Sbjct: 77 DVDVV-ELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAA 132
Query: 218 L-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L + + +SGG+++R I I V P ++L+DEPTS LD S K+ ++
Sbjct: 133 LWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 277 QKVAKAGRTVITTIH-QPSSRM-----FHMFDKLLLISEGYPVYYG-KARESMEYFS 326
++ K VI T + Q +SR+ F + L+ ++ ++ + +E+ +Y S
Sbjct: 191 VELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYIS 247
|
Length = 251 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALKR 167
++ ++ PG+ +A++GP+G+GK+TL+ ++ R+ D G I + +L+R
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTRASLRR 409
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ--MILKELGLERCRHTR 225
I V QD L + ++E+ + M + A+ + K G + T
Sbjct: 410 NIAVVFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD----TV 464
Query: 226 VGGGFIKG--ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
VG +G +SGGER+R +I +L DP +L+LDE TS LD + K+ L ++ K G
Sbjct: 465 VGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-G 520
Query: 284 RTVITTIHQPS 294
RT H+ S
Sbjct: 521 RTTFIIAHRLS 531
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 28/198 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGNITYNDIPYNP 163
+L+ ++ ++ PGE+ AL+GPSGSGK+T++ ++ GG++ D K I+ + Y
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK-PISQYEHKY-- 85
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVF----AAFLRLPGNMNRQQKYARVQMILKELGLE 219
L ++ V Q+ VL + ++++ + + +F + QK I + L
Sbjct: 86 -LHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECV---KEAAQKAHAHSFISE---LA 137
Query: 220 RCRHTRVGGGFIKG--ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
T VG KG +SGG+++R +I ++ +P +L+LDE TS LD+ S ++ Q L
Sbjct: 138 SGYDTEVGE---KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194
Query: 278 KVAKAGRTVITTIHQPSS 295
RTV+ H+ S+
Sbjct: 195 D-WPERRTVLVIAHRLST 211
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 26/199 (13%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK-GNITYNDIPYNP- 163
+D K + + I+ S+C GEIL G GSG+T L+ + G D G I N +P
Sbjct: 274 RDRKKV-RDISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPR 330
Query: 164 ----ALKRRIGFVTQ---DDVLLPQLTVEETLVFAAFLRLPG--------NMNRQQKYAR 208
A+K+ + ++T+ D+ P ++ + + + L+ G + +Q+ A
Sbjct: 331 SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAE 390
Query: 209 VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268
Q +EL +C I +SGG +++ I + P +++ DEPT G+D +
Sbjct: 391 NQ---RELLALKCHSVNQN---ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
Query: 269 ANKLIQVLQKVAKAGRTVI 287
++ +V++++A G+ ++
Sbjct: 445 KAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 61/193 (31%), Positives = 102/193 (52%), Gaps = 35/193 (18%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-------DIPYNP 163
IL ++ I PGE +A++GPSGSGK+TLL+++ G T G++ Y+ D+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDV---Q 523
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI-LKE------L 216
A++R++G V Q+ L+ ++ E + A L L + + +M L E +
Sbjct: 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTL------DEAWEAARMAGLAEDIRAMPM 576
Query: 217 GLERCRHTRV--GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
G+ HT + GGG +SGG+R+R I ++ P +LL DE TS LD+ + + +
Sbjct: 577 GM----HTVISEGGG---TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE 629
Query: 275 VLQKVAKAGRTVI 287
L+++ K R VI
Sbjct: 630 SLERL-KVTRIVI 641
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYNDIP-YNPAL-----KRRIG 170
G++ AL+GPSG GK+T+L+ + R+ D +KG + ++ Y+P + +RRIG
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLN-RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIG 97
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLR-LPGNMNRQQKYARVQMILKELGL-ERCRHTRVGG 228
V Q P+ ++ E + F A + G+M+ V+ L++ + + C+
Sbjct: 98 MVFQQPNPFPK-SIYENIAFGARINGYTGDMDEL-----VERSLRKAAVWDECKDKLNES 151
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT 288
G+ +SGG+++R I I ++P ++L+DEP S LD S K+ + + ++ K VI
Sbjct: 152 GY--SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIV 209
Query: 289 T 289
T
Sbjct: 210 T 210
|
Length = 269 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------- 163
L I+ + G +AL+G +GSGK+TL++ L G IT P
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGNKNLK 81
Query: 164 ALKRRIGFVTQ-DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI--LKELGLER 220
L++++ V Q + L + TV + + F P N + A+ + + LK++GL
Sbjct: 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGLS- 135
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+ +SGG+ +R +I + +P +L LDEP +GLD +++Q+ +
Sbjct: 136 ---EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192
Query: 281 KAGRTVITTIH 291
KAG TVI H
Sbjct: 193 KAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 3e-12
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 46/215 (21%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
LK I + GE++A++GP GSGK++LL + G L + G+++ I
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVP---------GSIA 69
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-------- 222
+V+Q+ + T+ E ++F +++Y +V ++ C
Sbjct: 70 YVSQEPWIQN-GTIRENILFGKPF-------DEERYEKV--------IKACALEPDLEIL 113
Query: 223 ----HTRVGGGFIKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-V 275
T +G KGI SGG+++R S+ + D + LLD+P S +D+ + +
Sbjct: 114 PDGDLTEIGE---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+ + +T I HQ + D+++++ G
Sbjct: 171 ILGLLLNNKTRILVTHQLQ--LLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGNITYNDIPYNP 163
+LKG+T ++ PGE++AL+GPSGSGK+T+ ++ GG++ D + Y+ +
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD----HH 551
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
L R++ V Q+ VL +V E + + + K A + E
Sbjct: 552 YLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEF--PNGYD 608
Query: 224 TRVG--GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
T VG G + SGG+++R +I ++ P +L+LDE TS LD+ +L+Q + +
Sbjct: 609 TEVGEKGSQL---SGGQKQRIAIARALVRKPRVLILDEATSALDAEC-EQLLQESRS--R 662
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
A RTV+ H+ S+ D++L++ +G V G ++ ME
Sbjct: 663 ASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 75/285 (26%), Positives = 140/285 (49%), Gaps = 37/285 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--DDVKGNITYNDIPYNPA-- 164
K L I+ SI G AL+G +GSGK+T+ K++ G L D+ IT + I
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79
Query: 165 --LKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
++ ++G V Q+ D TV + + F R + R + V+ +L ++G+
Sbjct: 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLD- 135
Query: 222 RHTRVGGGFIKG----ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
+I +SGG+++R +I + V+P +++LDE TS LD +++++++
Sbjct: 136 --------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 278 KVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAM 336
K+ K TVI+ H +M D++L++ +G + G E FS + + EI +
Sbjct: 188 KLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPV---EIFSKVEMLKEIGL 242
Query: 337 N-PAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYL-QLKYK 379
+ P + L + ISVP+ ++ ++ ++++YL QL K
Sbjct: 243 DIPFVYKLKNKLKE-KGISVPQEIN-----TEEKLVQYLCQLNSK 281
|
Length = 282 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 5e-12
Identities = 54/217 (24%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------PA 164
+LKG+ + L+G +G GK+TL + G L KG + + P + A
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRGLLA 74
Query: 165 LKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
L++++ V QD + + ++ + F+ LR G + + RV L + + RH
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLG-VPEAEITRRVDEALTLVDAQHFRH 131
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
I+ +S G++KR +I +++ LLLDEPT+GLD ++I +++++ G
Sbjct: 132 QP-----IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
VI + H ++ + D + ++ +G + +G E
Sbjct: 187 NHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGE 222
|
Length = 271 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 57/218 (26%), Positives = 113/218 (51%), Gaps = 15/218 (6%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP--YNPALKR 167
+K ++ ++ G+ LA++G +GSGK+TL K++ G + + G I ND P + R
Sbjct: 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG-MIEPTSGEILINDHPLHFGDYSFR 85
Query: 168 --RIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
RI + QD L P+L + + L F LRL ++ +Q+ ++ L+ +GL H
Sbjct: 86 SKRIRMIFQDPNTSLNPRLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLP-DH 142
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAKA 282
+ ++ G+++R ++ +++ P +++ DE + LD + ++LI + L+ K
Sbjct: 143 ANY---YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQ 199
Query: 283 GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
G + I + Q + H+ D++L++ EG V G +
Sbjct: 200 GISYI-YVTQHIGMIKHISDQVLVMHEGEVVERGSTAD 236
|
Length = 267 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 39/211 (18%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYNDIP-YNP-- 163
+K + I +I A +GPSG GK+T+L+ RL D V+G +T++ Y P
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDV 84
Query: 164 ---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLR-LPGNMN-------RQQK-YARVQM 211
++RRIG V Q P+ ++ + + + A + G+M+ RQ + V+
Sbjct: 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD 143
Query: 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
LK+ GL +SGG+++R I I V P ++L+DEP S LD S +
Sbjct: 144 KLKQSGL--------------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLR 189
Query: 272 LIQVLQKVAKAGRTVITTIH--QPSSRMFHM 300
I+ L K T+I H Q ++R+ M
Sbjct: 190 -IEELMHELKEQYTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 7e-12
Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR--- 168
L G ++ PG ++AL+G +G+GK+T++K++ G T D G+I Y +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA-GSILYLGKEVTFNGPKSSQE 78
Query: 169 --IGFVTQDDVLLPQLTVEETLVFA-AFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
IG + Q+ L+PQLT+ E + F+ G ++ ++ YA +L L L
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL 138
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
VG +S GE++ I + + ++++DEPT L T L +V++++ GR
Sbjct: 139 VG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG 193
Query: 286 VITTIHQPSSRMFHMFD 302
++ H R+ +F+
Sbjct: 194 IVYISH----RLKEIFE 206
|
Length = 501 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 65/264 (24%), Positives = 128/264 (48%), Gaps = 26/264 (9%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQD 175
+I G ++ L+GPSG GKTT+L++V G L +G I + D+ + +R I V Q
Sbjct: 28 TIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
L P +++ E + + L++ G + ++++ RV+ L+ + L ++ IS
Sbjct: 87 YALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLA-----GFEDRYVDQIS 138
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDST---SANKLIQVLQKVAKAGRTVITTIH- 291
GG+++R ++ +++ P +LL DEP S LD+ S + I+ LQ+ + IT+++
Sbjct: 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ-----QFNITSLYV 193
Query: 292 -QPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL---GFIPEIAMNPAEFLLDLAT 347
S F + D ++++++G + G +E +S F+ + + PA D
Sbjct: 194 THDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPATLSGDYVD 253
Query: 348 GQVTDISVPEALSASQGASDSEVL 371
+ +P + + D E
Sbjct: 254 --IYGYRLPRPAAFAFNLPDGECT 275
|
Length = 351 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 39/279 (13%)
Query: 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRL--TD---DVKGNITYNDIPYNPALKR 167
+ I+ I GEI+ +G +G+GK+T LK++ G L T V G + R
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR---REEYLR 97
Query: 168 RIGFVT-QDDVLLPQLTVEETL-VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
IG V Q L L ++L V +P + + R+ + + L LE
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAE----RLDFLTEILDLEGFLKWP 153
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAGR 284
V + +S G+R R + +L P +L LDEPT GLD + + + L++ +
Sbjct: 154 V-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLD 344
TV+ T H + + D++LLI +G V+ G + E F EF ++
Sbjct: 209 TVLLTTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFG----------PYKEFSVE 257
Query: 345 LATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQLE 383
L ++LS D + + L +K E
Sbjct: 258 L--------KQAKSLSQLALLGDVTIEEGLNIKNDVSRE 288
|
Length = 325 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 12/207 (5%)
Query: 91 VKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150
+SV QL+L + + +T I G A++GP+G GK+TLL+ + RL
Sbjct: 2 TESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPA 60
Query: 151 KGNITYNDIPY----NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN-RQQK 205
G++ + + + RRIG + Q+ +TV+E + + P R++
Sbjct: 61 HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED 120
Query: 206 YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
V ++ G+ T + + +SGG+R+R I + + +++LLDEPT+ LD
Sbjct: 121 EEAVTKAMQATGI-----THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
Query: 266 STSANKLIQVLQKVAKA-GRTVITTIH 291
+ L+++L ++ + G T+ +H
Sbjct: 176 ISHQIDLLELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 1e-11
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 108 YKH-ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN------ITYNDIP 160
+KH +LK I +I A++GPSG GK+TLL+ + R+ D V G + N+
Sbjct: 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN-RMNDIVSGARLEGAVLLDNENI 73
Query: 161 YNPAL-----KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
Y+P L ++R+G V Q P+ ++ + + F R+ G + + V+ L++
Sbjct: 74 YSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQ 130
Query: 216 LGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
L + + G +SGG+++R I + ++P ++L+DEP S LD S ++ +
Sbjct: 131 AALWDEVKDNLHKSGL--ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188
Query: 275 VLQKVAKAGRTVITT 289
++Q++ + I T
Sbjct: 189 LMQELKQNYTIAIVT 203
|
Length = 251 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 27/222 (12%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LKR 167
L ++G + GEIL L+GP+G+GK+TLL + G + G+I + P L R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELAR 72
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
+++Q + V L L P + + + + L L+
Sbjct: 73 HRAYLSQQQTPPFAMPVWHYLT----LHQPD----KTRTELLNDVAGALALDDKLGRS-- 122
Query: 228 GGFIKGISGGERKRTSIGYEIL-----VDPS--LLLLDEPTSGLDSTSANKLIQVLQKVA 280
+SGGE +R + +L +P+ LLLLDEP + LD + L ++L +
Sbjct: 123 ---TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 281 KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
+ G ++ + H + + H + L+ G + G+ E +
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 24/180 (13%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTT----LLKIVGGRLTDDVKGNITYND--IPYNP 163
H ++ ++ + PGE L+L+G SGSGK+T LL RL + G I +N I
Sbjct: 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL-----RLVESQGGEIIFNGQRIDTLS 392
Query: 164 A-----LKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
L+R I F+ QD L P+ TV ++++ LR+ G + + ARV +L+ +
Sbjct: 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP--LRVHGLLPGKAAAARVAWLLERV 450
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GL R F SGG+R+R I + ++P +++ DE S LD + ++I +L
Sbjct: 451 GLLPEHAWRYPHEF----SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506
|
Length = 623 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 52/198 (26%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK ++ I PG+ L + GPSG+GK++L + + G L G I +P +
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSGRI---GMP----EGEDLL 67
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
F+ Q LP T+ E L++ L
Sbjct: 68 FLPQRP-YLPLGTLREQLIYPWDDVL---------------------------------- 92
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
SGGE++R + +L P + LDE TS LD S ++L Q+L+ + G TVI+
Sbjct: 93 ----SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVG 145
Query: 291 HQPSSRMFHMFDKLLLIS 308
H+PS FH D++L +
Sbjct: 146 HRPSLWKFH--DRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALK 166
IL I+ +I ++G SGSGK+TL K++ G G I N L+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG-FFQARSGEILLNGFSLKDIDRHTLR 547
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR---- 222
+ I ++ Q+ + ++ E L+ A N Q I + +
Sbjct: 548 QFINYLPQEPYIFSG-SILENLLLGA------KENVSQ-----DEIWAACEIAEIKDDIE 595
Query: 223 ------HTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
T + G ISGG+++R ++ +L D +L+LDE TS LD+ + K++
Sbjct: 596 NMPLGYQTELSEEGS--SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN 653
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME---YFSSL 328
L + +T+I H+ S + DK++++ G + G E ++ +++SL
Sbjct: 654 LLNLQD--KTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 3e-11
Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 58/220 (26%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PA 164
K ILK I+ S PG + ++G +G+GK+TLL+I+ G D + PA
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------------DKEFEGEARPA 67
Query: 165 LKRRIGFVTQDDVLLPQLTVEETL------VFAAFLRL---------PGN-----MNRQQ 204
++G++ Q+ L P+ TV E + V AA R P Q
Sbjct: 68 PGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQ- 126
Query: 205 KYARVQMILKELG-------LE------RCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251
+Q I+ LE RC + +SGGER+R ++ +L
Sbjct: 127 --GELQEIIDAADAWDLDSQLEIAMDALRCPP---WDAKVTKLSGGERRRVALCRLLLEK 181
Query: 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
P +LLLDEPT+ LD+ S L Q L G TV+ H
Sbjct: 182 PDMLLLDEPTNHLDAESVAWLEQFLHDY--PG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 42/222 (18%)
Query: 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPALKRRIGFVTQD 175
GSI E++ ++GP+G GKTT +K++ G L D+ I + + Y P ++ D
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ------YIKAD 73
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
+ TV L Y + + I K L +E+ V +S
Sbjct: 74 Y----EGTVR------DLLSSITKDFYTHPYFKTE-IAKPLQIEQILDREV-----PELS 117
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS---ANKLIQVLQKVAKAGRTVITTIHQ 292
GGE +R +I + D + LLDEP++ LD A+K+I+ + + V+ H
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE--HD 175
Query: 293 PSSRMFHMFDKL---LLISEGYPVYYGKA------RESMEYF 325
M D L L++ EG P G A R M F
Sbjct: 176 -----IIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRF 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-------DIPYNPALKRRI---- 169
PGE+L ++G SGSGKTTLL + RL D G + Y D+ +RR
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPD-AGEVHYRMRDGQLRDLYALSEAERRRLLRT 89
Query: 170 --GFVTQD--DVLLPQLT----VEETLVFAAFLRLPGNMNRQ--QKYARVQMILKELGLE 219
GFV Q D L Q++ + E L+ A R G++ RV E+
Sbjct: 90 EWGFVHQHPRDGLRMQVSAGGNIGERLM-AVGARHYGDIRATAGDWLERV-----EIDAA 143
Query: 220 RCRHTRVGGGFI----KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD-STSANKLIQ 274
R I SGG ++R I ++ P L+ +DEPT GLD S A L
Sbjct: 144 R----------IDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDL 193
Query: 275 VLQKVAKAGRTVITTIH 291
+ V + G V+ H
Sbjct: 194 LRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 3e-11
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 39/197 (19%)
Query: 123 EILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYNDIP-YNP-----ALKRRIGF 171
+I+A +GPSG GK+TLL+ R+ D V+G + Y D Y+ L+R++G
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFN-RMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM 105
Query: 172 VTQDDVLLPQLTVEETLVFAAFLR-LPGNMNRQQKYA--------RVQMILKELGLERCR 222
V Q P+ ++ E + FA GN++ + + V+ LKE G
Sbjct: 106 VFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKG----- 159
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+SGG+++R I I + P +LL+DEP S LD S ++ ++ ++ K
Sbjct: 160 ---------TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KE 209
Query: 283 GRTVITTIH--QPSSRM 297
T+I H Q +SR+
Sbjct: 210 QYTIIMVTHNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-11
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 37/188 (19%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
+++ + ++ PG+ +AL+G SGSGK+T+ K+V G L G I ++ IP + R
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG-LYQPWSGEILFDGIPRE-EIPRE 549
Query: 169 I-----GFVTQDDVLLPQLTVEE-------TLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
+ V Q D+ L + TV + T+ A +R + I +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRA----------CKDAAIHDVI 598
Query: 217 GLERCRHTRVGGGF---IKG---ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+R GG +G +SGG+R+R I ++ +PS+L+LDE TS LD +
Sbjct: 599 T------SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652
Query: 271 KLIQVLQK 278
+ L++
Sbjct: 653 IIDDNLRR 660
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPALKRR-- 168
L ++ + GEI++L G +G+GK+TL+K++ G +G I + L+
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE----LQASNI 76
Query: 169 -------IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
I + Q+ L+ +L+V E + + G M+ Y R Q +L +L L+
Sbjct: 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN 136
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264
T VG + G+++ I + LL+LDEPT+ L
Sbjct: 137 PATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
|
Length = 506 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-----------KGNITYNDIP 160
+K + I + A++GPSG GK+T L+ + R+ D + G Y
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 161 YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
L+++IG V Q P+ ++ + + + RL G +++Q V+ L++ L
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGP--RLHGINDKKQLEEIVEKSLRKAALWD 170
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
R+ + G+SGG+++R + + V+P +LLLDEPTS LD + K+ ++Q++
Sbjct: 171 EVSDRLDKNAL-GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL- 228
Query: 281 KAGRTVITTIH--QPSSRM--FHMF 301
+ T++ H Q +SR+ + MF
Sbjct: 229 RGSYTIMIVTHNMQQASRVSDYTMF 253
|
Length = 286 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNP-ALK 166
IL I+ S+ GE + GPSG GK+TLLKIV ++ G + + P +
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDISTLKPEIYR 80
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
+++ + Q L TV + L+F +R N+Q A L+ L T+
Sbjct: 81 QQVSYCAQTPTLFGD-TVYDNLIFPWQIR-----NQQPDPAIFLDDLERFALPDTILTKN 134
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
I +SGGE++R S+ + P +LLLDE TS LD
Sbjct: 135 ----IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 11/188 (5%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNPALKRR-- 168
L GI + PGE + L G +G+GK+TL+KI+ G G I ++ P + R
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 169 ---IGFVTQDDVLLPQLTVEETLVFAAFLRLPGN-MNRQQKYARVQMILKELGLERCRHT 224
I + Q+ L+P+L+V E + + LPG M Y R + +L+EL L+ T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
R G + GG+++ I + LL+LDEP+S L L+ +++ + G
Sbjct: 137 RPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 285 TVITTIHQ 292
+ H+
Sbjct: 193 ACVYISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 52/212 (24%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A 164
L+ + ++ PG++L + GP+GSGK+TLL ++ R D +G+I ++DIP +
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI-QRHFDVSEGDIRFHDIPLTKLQLDS 386
Query: 165 LKRRIGFVTQDDVLLP---------------QLTVEETLVFAA----FLRLPGNMNRQQK 205
+ R+ V+Q L Q +E A+ LRLP Q
Sbjct: 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP------QG 440
Query: 206 YARVQMILKELGLERCRHTRVGGGFIKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSG 263
Y T VG +G+ SGG+++R SI +L++ +L+LD+ S
Sbjct: 441 Y----------------DTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSA 481
Query: 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
+D + ++++ L++ + GRTVI + H+ S+
Sbjct: 482 VDGRTEHQILHNLRQWGE-GRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 6e-11
Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 21/224 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-------NITYNDIPY 161
K LK ++ I + AL+GPSG GK+T ++ + R+ D +K +I DI Y
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSIEGEDI-Y 82
Query: 162 NP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
P L++ +G V Q P +++ + + + R+ G N++ V+ L+
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGP--RIHG-ANKKDLDGVVENALRSA 138
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L R+ + +SGG+++R I + V P ++L DEPTS LD S ++ ++
Sbjct: 139 ALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI 197
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ K VI T + + + L+ E + +G+ R+
Sbjct: 198 MNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE--LIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 6e-11
Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 31/210 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNP--ALK 166
+LK ++ + GE + ++G +G+GK+TL+ + R + +G I + DI P L+
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILAL-FRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
+ + QD L F+ +R N++ +Y+ + I L RV
Sbjct: 82 SSLTIIPQDPTL-----------FSGTIRS--NLDPFDEYSDEE-IYGAL--------RV 119
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
G + +S G+R+ + +L P +L+LDE T+ +D + + LIQ + T+
Sbjct: 120 SEGGLN-LSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTI 177
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
+T H+ + + +DK+L++ G Y
Sbjct: 178 LTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I GE+LA+ G +GSGKT+LL ++ G L + +G I ++ RI
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSG---------RIS 101
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV----QMILKELGLERCRHTRV 226
F +Q ++P T++E ++F G + +Y V Q+ +T +
Sbjct: 102 FSSQFSWIMPG-TIKENIIF-------GVSYDEYRYKSVVKACQLEEDITKFPEKDNTVL 153
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGR 284
G G I +SGG+R R S+ + D L LLD P LD + ++ + V + +A R
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTR 212
Query: 285 TVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
++T S+M H+ DK+L++ EG +YG E
Sbjct: 213 ILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 244
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIV--------GGRLTDDVKGNITYNDIPY 161
L ++ + G+I ++G SG+GK+TL++ V G + D ++T
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQ--DLTTLSNSE 76
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
+R+IG + Q LL TV + L N + + +V +L +GL
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALVGLGDK 133
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+ + +SGG+++R +I + +P +LL DE TS LD + ++++L+++ +
Sbjct: 134 HDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 282 A-GRTVITTIHQ 292
G T++ H+
Sbjct: 189 RLGLTILLITHE 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 9e-11
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 22/192 (11%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI--------PYNP 163
+ + G+ A++G +GSGK+TL++ + L G +T +DI Y
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLKPTTGTVTVDDITITHKTKDKYIR 81
Query: 164 ALKRRIGFVTQ-DDVLLPQLTVEETLVFAAFLRLPGN--MNRQQKYARVQMILKELGLER 220
+++RIG V Q + L + TVE ++F P N MN + +L +LG R
Sbjct: 82 PVRKRIGMVFQFPESQLFEDTVEREIIFG-----PKNFKMNLDEVKNYAHRLLMDLGFSR 136
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
V +SGG+ ++ +I + ++P +++LDEPT+GLD S +++++L+ +
Sbjct: 137 ----DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192
Query: 281 -KAGRTVITTIH 291
+T+I H
Sbjct: 193 TDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 1e-10
Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 24/199 (12%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITY--NDI 159
D+K L I I I AL+GPSG GK+T L+ + R+ D ++GN+ Y +I
Sbjct: 19 DFK-ALNNINIKILKNSITALIGPSGCGKSTFLRTLN-RMNDLVEGIKIEGNVIYEGKNI 76
Query: 160 PYNP----ALKRRIGFVTQDDVLLPQ---LTVEETLVFAAFLRLPGNMNRQQKYARVQMI 212
N L+R+IG V Q P +++ + + + ++ G ++++ V+
Sbjct: 77 YSNNFDILELRRKIGMVFQT----PNPFLMSIYDNISYGP--KIHGTKDKKKLDEIVEQS 130
Query: 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
LK+ L ++ + +SGG+++R I + ++P+++L+DEPTS LD S K+
Sbjct: 131 LKKSALWNEVKDKLNTNALS-LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI 189
Query: 273 IQVLQKVAKAGRTVITTIH 291
+++ + K T+I H
Sbjct: 190 EELIINL-KESYTIIIVTH 207
|
Length = 254 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 16/224 (7%)
Query: 60 IEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSI 119
E+ P + F + +V P+ V + +S+D+ + ++ +
Sbjct: 248 KEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEV 307
Query: 120 CPGEILALMGPSGSGKTTLLKIVGG-----------RLTDDVKGNITYNDIPYNPALKRR 168
GEI ++G SG+GKTTL KI+ G R+ D+ ++T KR
Sbjct: 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWV-DMTKPGPDGRGRAKRY 366
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
IG + Q+ L P TV + L A L LP + R + + LK +G + + +
Sbjct: 367 IGILHQEYDLYPHRTVLDNLTEAIGLELPDELARM----KAVITLKMVGFDEEKAEEILD 422
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
+ +S GER R ++ ++ +P +++LDEPT +D + +
Sbjct: 423 KYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDI---- 159
D + +L + + PGE L + G SG+GKT+LL+ + G L G I+ + +
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRISMPADSALLFLP 462
Query: 160 --PYNPA--LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
PY P L+ + + + L L ++ + ++ RV
Sbjct: 463 QRPYLPQGTLREALCY-PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV------ 515
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+SGGE++R + +L P + LDE TS LD + ++L Q+
Sbjct: 516 ------------------LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL 557
Query: 276 LQKVAKAGRTVITTIHQPSSRMFH-MFDKLLLISEGYPV 313
L++ TVI+ H+P+ FH +LL + G +
Sbjct: 558 LKEELP-DATVISVGHRPTLWNFHSRQLELLDDAGGQNL 595
|
Length = 604 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 1e-10
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 79 VRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTL 138
++I K A D +P + ++L+ LK I + ++ AL+GPSG GK+T
Sbjct: 1 MQIFKPAGDVSP--TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTF 58
Query: 139 LKIVGGRLTDDVKGNITYNDIPYNP-------------ALKRRIGFVTQDDVLLPQLTVE 185
L+ R+ D GN +I +P ++ RI V Q P+ E
Sbjct: 59 LRCFN-RMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFE 117
Query: 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG 245
A LR+ G R RV+ L+ L R+G +SGG+++R I
Sbjct: 118 NV---AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGD-LAFNLSGGQQQRLCIA 173
Query: 246 YEILVDPSLLLLDEPTSGLD---STSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297
+ DP +LL DEPTS LD + S +LI L+ K ++T Q ++R+
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARV 226
|
Length = 265 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 1e-10
Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 15/232 (6%)
Query: 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-----NI 154
+ L+L K L I I +I AL+G SG GK+T L+ R+ D + I
Sbjct: 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-RMNDKIAKIDGLVEI 64
Query: 155 TYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM-NRQQKYARVQM 211
D+ AL++ +G V Q + + ++ E + +A +L G + N+ ++ A V
Sbjct: 65 EGKDVKNQDVVALRKNVGMVFQQPNVFVK-SIYENISYAP--KLHGMIKNKDEEEALVVD 121
Query: 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
L+++GL ++ + +SGG+++R I + + P LLLLDEPTS LD S+
Sbjct: 122 CLQKVGLFEEVKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180
Query: 272 LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+ ++L++++ ++ T + + + D G + +G+++E E
Sbjct: 181 IEELLKELSHNLSMIMVTHNMQQGK--RVADYTAFFHLGELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 1e-10
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 45/235 (19%)
Query: 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALM 128
+KFE V Y + N S AS+ D D + + G AL+
Sbjct: 1 MIKFEKVNYTYQPN-------------SPFASRALFDIDLE---------VKKGSYTALI 38
Query: 129 GPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA--------LKRRIGFVTQDDVLLP 180
G +GSGK+TLL+ + G L +G +T DI + +++++G V Q P
Sbjct: 39 GHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FP 93
Query: 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKG----ISG 236
+ + E V P N ++ A +++ E+ + F + +SG
Sbjct: 94 ESQLFEETVLKDVAFGPQNFGIPKEKA------EKIAAEKLEMVGLADEFWEKSPFELSG 147
Query: 237 GERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
G+ +R +I + ++P +L+LDEPT+GLD + +++Q+ + + ++G+TV+ H
Sbjct: 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 63/244 (25%), Positives = 122/244 (50%), Gaps = 28/244 (11%)
Query: 89 NPVKSVVSKVAS-QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147
KSV+ KV + S + LK ++ I GE +A++G +GSGK+T+ KI+ G L
Sbjct: 1 IKNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-LL 59
Query: 148 DDVKGNITYNDIPYN----PALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNR 202
G I + I + ++++IG + Q+ D TVE+ + F G N+
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF-------GLENK 112
Query: 203 QQKYARVQMILKELGLERCRHTRVG-GGFIK----GISGGERKRTSIGYEILVDPSLLLL 257
+ +++ I+ +L +VG ++ +SGG+++R +I + ++P +++
Sbjct: 113 KVPPKKMKDIIDDLA------KKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166
Query: 258 DEPTSGLDSTSANKLIQVLQKVAKAG-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
DE TS LD ++ +++ + K +T+I+ H + + DK+++ SEG + G
Sbjct: 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQG 224
Query: 317 KARE 320
K +E
Sbjct: 225 KPKE 228
|
Length = 271 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 29/196 (14%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNP 163
K+ L ++ + GE L+++G +GSGK+T ++++ G L + + G++ + ++
Sbjct: 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWD- 78
Query: 164 ALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL---- 218
++ +IG V Q+ D TVE+ + F L G + ++ RV L+ +G+
Sbjct: 79 -IRHKIGMVFQNPDNQFVGATVEDDVAFG--LENKG-IPHEEMKERVNEALELVGMQDFK 134
Query: 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
E R +SGG+++R +I + + P +++LDE TS LD +LI+ +
Sbjct: 135 EREPAR-----------LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183
Query: 277 QKVAKA-GRTVITTIH 291
+ + TVI+ H
Sbjct: 184 KGIRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 49/190 (25%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITY--NDIPYNPA 164
++GI+ I ++ A++GPSG GK+T +K + R+++ V+G + + +I Y+P
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQNI-YDPR 80
Query: 165 -----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
L+R+IG V Q P +++ E + + +R+ + + V+ LK L
Sbjct: 81 ININRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALW 137
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ ++ + G+SGG+++R I + + P +LL+DEP S LD + K+ +++ +
Sbjct: 138 QEVKDKLNKSAL-GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL 196
Query: 280 AKAGRTVITT 289
I T
Sbjct: 197 RSELTIAIVT 206
|
Length = 259 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 23/150 (15%)
Query: 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD 176
G I GE++ ++GP+G GKTT +K++ G + D +G+ + Y P +++ D
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD-EGSEEDLKVSYKPQ------YISPD- 413
Query: 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG 236
TVE+ L A + + + I+K L LE V +SG
Sbjct: 414 ---YDGTVEDLLRSAIRSAFGSSYFKTE-------IVKPLNLEDLLERPVD-----ELSG 458
Query: 237 GERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
GE +R +I + + L LLDEP++ LD
Sbjct: 459 GELQRVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 3e-10
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLT-----DDVKGNITYNDIPYNPALKRRIGFVTQD 175
PGE L+G +G+GKTT K++ G T V G +I + + +G+ Q
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS---DVHQNMGYCPQF 2020
Query: 176 DVLLPQLTVEETLVFAAFLR-LPGN-MNRQQKYARVQMILKELGLERCRHTRVGGGFIKG 233
D + LT E L A LR +P + + ++ ++ LGL R+ G +
Sbjct: 2021 DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWS-----IQSLGLS-LYADRLAGTY--- 2071
Query: 234 ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
SGG +++ S ++ P L+LLDEPT+G+D + L + + + GR V+ T H
Sbjct: 2072 -SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 30/214 (14%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYN--DIPY 161
K L + I + A +GPSG GK+T L+ + R+ D V G IT + DI Y
Sbjct: 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDI-Y 89
Query: 162 NPA-----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKE 215
+P L+ R+G V Q P+ ++ E + + R+ G ++ + V+ L++
Sbjct: 90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGP--RIHGLARSKAELDEIVETSLRK 146
Query: 216 LGLERCRHTRVGG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
GL R+ G G+SGG+++R I I V P ++L+DEP S LD + K+ +
Sbjct: 147 AGLWEEVKDRLHEPG--TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE 204
Query: 275 VLQKVAKAGRTVITTIH--QPSSR------MFHM 300
++ ++ + VI T H Q ++R FH+
Sbjct: 205 LIDELRQNYTIVIVT-HSMQQAARVSQRTAFFHL 237
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 36/259 (13%)
Query: 78 KVRINKAASDSNPVKSVVSKVASQLSLDKDY--KHILKGITGSICPGEILALMGPSGSGK 135
V + ++ + V +L+ Y H LK I I E+ A++GPSG GK
Sbjct: 4 TVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGK 63
Query: 136 TTLLKIVGGRLTDDVKGNITYNDIPYN-----------PALKRRIGFVTQDDVLLPQLTV 184
+T +K + R+ + V T I Y L+ +G V Q P+ ++
Sbjct: 64 STYIKTLN-RMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SI 121
Query: 185 EETLVFAAFLRLPGNMNRQ------QKYARVQMILKELGLERCRHTRVGGGFIKGISGGE 238
+ + + ++ G +++ +K R I EL +R H G+SGG+
Sbjct: 122 YDNVTYGP--KIHGIKDKKTLDEIVEKSLRGAAIWDELK-DRL-HDNA-----YGLSGGQ 172
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH--QPSSR 296
++R I + ++P ++L+DEPTS LD S K+ +++Q++ K ++I H Q ++R
Sbjct: 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KKDYSIIIVTHNMQQAAR 231
Query: 297 MFHMFDKLLLISEGYPVYY 315
+ DK GY Y
Sbjct: 232 ---ISDKTAFFLNGYVNEY 247
|
Length = 271 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 60/246 (24%), Positives = 120/246 (48%), Gaps = 42/246 (17%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA------- 164
L + I GE + L+G +GSGK+TL++ + G L G I + + +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGV--DITDKKVKLS 79
Query: 165 -LKRRIGFVTQ-DDVLLPQLTVEETLVFAAFLRLPGNM--NRQQKYARVQMILKELGLER 220
+++++G V Q + L + T+E+ + F P N+ + ++ RV+ + +GL+
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFG-----PINLGLSEEEIENRVKRAMNIVGLDY 134
Query: 221 CRHTRVGGGFIKG-----ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL--- 272
K +SGG+++R +I + ++P +L+LDEPT+GLD +++
Sbjct: 135 --------EDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK 186
Query: 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE---SMEYFSSLG 329
I+ L K + T+I H + + D+++++++G G RE +E S+G
Sbjct: 187 IKELHK--EYNMTIILVSHSMED-VAKLADRIIVMNKGKCELQGTPREVFKEVETLESIG 243
Query: 330 F-IPEI 334
+P++
Sbjct: 244 LAVPQV 249
|
Length = 287 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 21/175 (12%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGNITYNDIPYNPA 164
L G++ ++ G+ LA++G SG GK+TL +++ GG L + ++ D
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQ-DLLKADPEAQKL 89
Query: 165 LKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
L+++I V Q+ L P+ V + L L + +++ ++ + ++ ++GL
Sbjct: 90 LRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLRPEH 147
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD-STSANKLIQVL 276
+ R F SGG+R+R +I +++DP +++ DEP S LD S A QVL
Sbjct: 148 YDRYPHMF----SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQA----QVL 194
|
Length = 327 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 35/228 (15%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALKR 167
L+ I I G+ +AL+G SGSGK+T+ ++ R D +G I + +L+
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT-RFYDIDEGEILLDGHDLRDYTLASLRN 417
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM------------ILKE 215
++ V+Q+ V L T+ + +A R ++Y+R Q+ I K
Sbjct: 418 QVALVSQN-VHLFNDTIANNIAYA----------RTEQYSREQIEEAARMAYAMDFINK- 465
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
++ T +G + +SGG+R+R +I +L D +L+LDE TS LD+ S +
Sbjct: 466 --MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
L ++ K RT + H+ S+ D++L++ +G V G E +
Sbjct: 523 LDELQK-NRTSLVIAHRLST--IEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-10
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 39/221 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I+ + G++LA+ G +GSGK++LL ++ G L +G I ++ RI
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSG---------RIS 490
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRH 223
F Q ++P T+++ ++F G + +Y V +K LE
Sbjct: 491 FSPQTSWIMPG-TIKDNIIF-------GLSYDEYRYTSV---IKACQLEEDIALFPEKDK 539
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAK 281
T +G G I +SGG+R R S+ + D L LLD P + LD + ++ + + + ++
Sbjct: 540 TVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 282 AGRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S++ H+ DK+LL+ EG +YG E
Sbjct: 599 KTRILVT------SKLEHLKKADKILLLHEGVCYFYGTFSE 633
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 41/181 (22%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K IL+G+ + PGE+ A+MGP+GSGK+TL + GR +V G
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG--------------T 59
Query: 169 IGFVTQDDVLLPQLTVEETL---VFAAF---LRLPGNMNR---QQKYARVQMILKELGLE 219
+ F +D L +L+ E+ +F AF + +PG N+ Q V+ + L+
Sbjct: 60 VEFKGKD---LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLD 116
Query: 220 RCRHTRVGGGFIK---------------GISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264
R + I G SGGE+KR I +++P L +LDE SGL
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 265 D 265
D
Sbjct: 177 D 177
|
Length = 248 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-10
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 25/200 (12%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
A L+ ++ + + + + GE L + G +G+GKTTLL+++ G L + G I +
Sbjct: 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDG 72
Query: 159 IPYNPALKRR-IGFVTQDDVLLPQLTVEETLVFAAFL------RLPGNMNRQQKYARVQM 211
+ R + ++ L L+ E L F L ++PG+
Sbjct: 73 KTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSA----------- 121
Query: 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
L +GL T V + +S G++KR ++ L L LLDEP + LD
Sbjct: 122 -LAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175
Query: 272 LIQVLQKVAKAGRTVITTIH 291
+ +++ + G + T H
Sbjct: 176 VNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 6e-10
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 18/193 (9%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY------- 161
KH+L + I ++ A +GPSG GK+T L+ + +L D ++G +I +
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-QLNDLIEGTSHEGEIYFLGTNTRS 153
Query: 162 ----NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
+ L+ RIG V Q ++++ + + + R G +R+ V+ LK
Sbjct: 154 KKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAA 210
Query: 218 L-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L + + G +SGG+++R I I ++P +LL+DEPTS LD + K+ +++
Sbjct: 211 LWDEVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268
Query: 277 QKVAKAGRTVITT 289
++ K +I T
Sbjct: 269 LELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-10
Identities = 51/203 (25%), Positives = 101/203 (49%), Gaps = 15/203 (7%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----PALKRRIGFV 172
S+ GEIL + G G+G+T L++ + G +GN+ N P + A++ I V
Sbjct: 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341
Query: 173 TQD---DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229
+D ++P L V + + + M R A +Q+I ++R +
Sbjct: 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKM-RIDAAAELQIIGS--AIQRL-KVKTASP 397
Query: 230 F--IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
F I +SGG +++ + +L +P +L+LDEPT G+D + ++ +++ ++A+ G +I
Sbjct: 398 FLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
Query: 288 TTIHQPSSRMFHMFDKLLLISEG 310
+ + + + D++L+I EG
Sbjct: 458 -VVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 9e-10
Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-----DVKGNITYNDIPYNPALK 166
L G++ SI GE ++++G +GSGK+T +++ G + + G + + +N L+
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN--LR 80
Query: 167 RRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
R+IG V Q+ D TVE+ + F + + R++ RV L + + + TR
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFK-TR 136
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGR 284
+SGG+++R ++ I + P +++LDE TS LD T ++++V+ ++ K
Sbjct: 137 EPAR----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 285 TVITTIH 291
TV++ H
Sbjct: 193 TVLSITH 199
|
Length = 277 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 2e-09
Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 55/232 (23%)
Query: 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKRRIGFVTQD 175
G I GE++ ++GP+G GKTT K++ G L D +G + I Y P ++ D
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQ------YIKPD 412
Query: 176 DVLLPQLTVEETLVFAAFLR-LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGI 234
TVE+ LR + ++ Y + + I+K L LER V K +
Sbjct: 413 ----YDGTVED------LLRSITDDLG--SSYYKSE-IIKPLQLERLLDKNV-----KDL 454
Query: 235 SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ--KVAKAGRTVITTIHQ 292
SGGE +R +I + D L LLDEP++ LD V Q VAKA R + +
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLD---------VEQRLAVAKAIRRIAEE--R 503
Query: 293 PSSRMF--H---MFDKL---LLISEGYPVYYGKA------RESM-EYFSSLG 329
++ + H M D + L++ EG P +G A RE M + LG
Sbjct: 504 EATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRFLKELG 555
|
Length = 590 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-09
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158
LS K +LK I+ +I PG+ + L+G +G+GK+TLLK++ G L D +G +T+
Sbjct: 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGS 61
Query: 159 ---IPYNPAL----KRRIG----FVTQDDVLL 179
I Y L K R+ + ++LL
Sbjct: 62 TVKIGYFEQLSGGEKMRLALAKLLLENPNLLL 93
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-09
Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIV-------GGR-LTDDVKGNITYNDIPY 161
H L ++ I GEI ++G SG+GK+TL++ + GR L D ++T
Sbjct: 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQ--DLTALSEKE 76
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
+R+IG + Q LL TV + + L L G + + ARV +L+ +GL
Sbjct: 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALP--LELAG-TPKAEIKARVTELLELVGLSDK 133
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-A 280
+ +SGG+++R +I + +P +LL DE TS LD + ++++L+ +
Sbjct: 134 ADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 281 KAGRTVITTIHQ 292
+ G T++ H+
Sbjct: 189 ELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 17/226 (7%)
Query: 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSG 134
V VR + K + +V LS+ K + I+ I + AL+GPSG G
Sbjct: 1 VVQMVREKIEIAPFPEAKEHILEV-KDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCG 59
Query: 135 KTTLLKIVGGRLTDDVKGNITYNDIPYNP-----------ALKRRIGFVTQDDVLLPQLT 183
K+T L+ + R+ D + + +I Y L+R IG V Q P+ +
Sbjct: 60 KSTFLRSIN-RMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-S 117
Query: 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTS 243
+ + A L+ G + V+ L + L R+ + +SGG+++R
Sbjct: 118 IYNNITHA--LKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALS-LSGGQQQRLC 174
Query: 244 IGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITT 289
I + + P++LLLDEP S LD S K+ +++ ++ + +I T
Sbjct: 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVT 220
|
Length = 268 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 4e-09
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 39/213 (18%)
Query: 92 KSVVSKVASQLSLDKDYKHILKGITGSICP---GEILALMGPSGSGKTTLLKIVGGRLTD 148
+ + LDK + + S P EI +GPSG GK+T+L+ + R+ D
Sbjct: 1 MVSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLN-RMND 59
Query: 149 DVKG-------NITYNDI---PYNPALKRR-IGFVTQDDVLLPQLTVEETLVFAAFL-RL 196
VKG + D+ +P + RR IG V Q +++ + + F L R
Sbjct: 60 LVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY 118
Query: 197 PGNMNRQQKYA--------RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248
G++ + K+A V+ LK GL +SGG+++R I I
Sbjct: 119 KGDLGDRVKHALQGAALWDEVKDKLKVSGLS--------------LSGGQQQRLCIARAI 164
Query: 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+P +LLLDEP S LD + ++ +++ ++ K
Sbjct: 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
|
Length = 261 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------- 163
L + +I G A +G +GSGK+T+++++ G +G++ +D
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSKNKDIK 81
Query: 164 ALKRRIGFVTQDDVLLP--QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
+++++G V Q P QL E L AF P N Q+ A + ++L L
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEETVLKDVAFG--PQNFGVSQEEA-EALAREKLAL--- 131
Query: 222 RHTRVGGG---FIKG---ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
VG F K +SGG+ +R +I + ++P +L+LDEPT+GLD +L+ +
Sbjct: 132 ----VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187
Query: 276 LQKVAKAGRTVITTIH 291
+K+ ++G T++ H
Sbjct: 188 FKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 55/267 (20%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD---VKGNITYN- 157
L+ D K +LK I+ +I GE+L ++G SG+GK+ L+ ++ G D G I Y+
Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG--MDQYEPTSGRIIYHV 63
Query: 158 ------------------------------------DIPYNPALKRRIGFVTQDDVLLPQ 181
+++RI + Q L
Sbjct: 64 ALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL-- 121
Query: 182 LTVEETLVFAAFLRLPGNMNRQQKYA--RVQMILKELGLERCRHTRVGGGFIKGISGGER 239
+ V L + + K A R +++ + L R T + + +SGGE+
Sbjct: 122 --YGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIA----RDLSGGEK 174
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298
+R + ++ +P L L DEPT LD +A + L++ KA G +++ T H P +
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IE 233
Query: 299 HMFDKLLLISEGYPVYYGKARESMEYF 325
+ DK + + G G E + F
Sbjct: 234 DLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 8e-09
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 30/197 (15%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------- 163
L + SI G +A++G +GSGK+TLL+ + G L G +T +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLK 81
Query: 164 ALKRRIGFVTQDDVLLP--QL---TVEETLVFAAFLRLPGN--MNRQQKYARVQMILKEL 216
L++++G V Q P QL TVE+ + F P N ++ + + + +++ +
Sbjct: 82 PLRKKVGIVFQ----FPEHQLFEETVEKDICFG-----PMNFGVSEEDAKQKAREMIELV 132
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
GL R F +SGG+ +R +I + ++P +L+LDEPT+GLD +++++
Sbjct: 133 GLPEELLAR--SPF--ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188
Query: 277 QKVAK-AGRTVITTIHQ 292
K+ K G T + H
Sbjct: 189 YKLHKEKGLTTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 26/184 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKT-TLLKIVGGRLTDDVKGNITYNDIPYN------- 162
++ ++ I GE LAL+G SGSGK+ T L I+ RL DI ++
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGESLLHA 81
Query: 163 --PALKR----RIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI-- 212
L+ +I + Q+ + L P T+E+ L L L M R+ AR +++
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--YEVLSLHRGMRREA--ARGEILNC 137
Query: 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
L +G+ R R+ + +SGGER+R I +L P LL+ DEPT+ LD + ++
Sbjct: 138 LDRVGI-RQAAKRLTD-YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQI 195
Query: 273 IQVL 276
+Q+L
Sbjct: 196 LQLL 199
|
Length = 529 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-08
Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 19/203 (9%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG--GRLTDDVK-------- 151
LS D + IL+G++ I ++ A++GPSG GK+T LK + L +V+
Sbjct: 13 LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFF 72
Query: 152 -GNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
NI + N L+R++ V L P ++V + + + +++ G + + V+
Sbjct: 73 NQNIYERRVNLN-RLRRQVSMVHPKPNLFP-MSVYDNVAYG--VKIVGWRPKLEIDDIVE 128
Query: 211 MILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
LK+ L + +H +SGG+++R I + V P +LL+DEP GLD ++
Sbjct: 129 SALKDADLWDEIKHKIHKSAL--DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 270 NKLIQVLQKVA-KAGRTVITTIH 291
K+ ++Q + ++ T++ H
Sbjct: 187 MKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-08
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 131 SGSGK-TTLLKIVGGRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDDVLLPQLTVEETL 188
GSG+ +T+ K G L D V + YN L+ V+Q+ +L +++ E +
Sbjct: 1264 GGSGEDSTVFKNSGKILLDGV------DICDYNLKDLRNLFSIVSQEPMLF-NMSIYENI 1316
Query: 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248
F ++ R K+A + ++ L + T VG + K +SGG+++R +I +
Sbjct: 1317 KFGKEDATREDVKRACKFAAIDEFIESLPNKY--DTNVGP-YGKSLSGGQKQRIAIARAL 1373
Query: 249 LVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVITTIHQPSS 295
L +P +LLLDE TS LDS S KLI+ ++ KA +T+IT H+ +S
Sbjct: 1374 LREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRIAS 1421
|
Length = 1466 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 47/195 (24%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L++ H L+ + SI ++ + G SGSGK+TL+ N+ Y
Sbjct: 1 LTVSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV-----------------NEGLY 43
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
R I F L+F L+ ++ L L L +
Sbjct: 44 ASGKARLISF--------LPKFSRNKLIFIDQLQFLIDVG-----------LGYLTLGQK 84
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKV 279
T +SGGE +R + E+ +P +L +LDEP++GL N+L++V++ +
Sbjct: 85 LST---------LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135
Query: 280 AKAGRTVITTIHQPS 294
G TVI H
Sbjct: 136 IDLGNTVILIEHNLD 150
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 45/234 (19%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYN 162
+ + K +LK + I PG+ + + G +GSGK++ L + R+ D G I + DI
Sbjct: 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSS-LSLAFFRMVDIFDGKIVIDGIDISKL 88
Query: 163 P--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK-----------YARV 209
P L+ R+ + QD +L F+ +R N++ + K A++
Sbjct: 89 PLHTLRSRLSIILQDPIL-----------FSGSIRF--NLDPECKCTDDRLWEALEIAQL 135
Query: 210 QMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
+ ++K L GL+ T G F S G+R+ + + S+L++DE T+ +D
Sbjct: 136 KNMVKSLPGGLDAVV-TEGGENF----SVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 268 SANKLIQVLQKV---AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318
+ N +LQKV A A RTV+T H+ S+ + D +L++S G V
Sbjct: 191 TEN----ILQKVVMTAFADRTVVTIAHRVSTIL--DADLVLVLSRGILVECDTP 238
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 23/203 (11%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQD- 175
GEIL + G G+G+T L+K++ G L G +T + L I ++++D
Sbjct: 278 GEILGVSGLMGAGRTELMKVLYGALPRT-SGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336
Query: 176 --DVLLPQLTVEETLVFAA---FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
D L+ ++V+E + A F R G++ + V ++ ++ T
Sbjct: 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----TPSMEQA 392
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
I +SGG +++ +I ++ P +L+LDEPT G+D + ++ Q++ + G ++I
Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILV- 451
Query: 291 HQPSSRM---FHMFDKLLLISEG 310
SS M M D++L++ EG
Sbjct: 452 ---SSEMPEVLGMSDRILVMHEG 471
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 18/199 (9%)
Query: 122 GEILALMGPSGSGKTT----LLKIVGGRLTDDVKGNITYNDIPYNPA--LKRRIGFVTQD 175
GE+LAL+G SGSGK+ +L ++ LT G I + P P R I + Q+
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQ-TSGEILLDGRPLLPLSIRGRHIATIMQN 70
Query: 176 --DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI--LKELGLERCRHTRVGGGFI 231
P T+ + LR G +++Q AR ++ L+ +GL V +
Sbjct: 71 PRTAFNPLFTMGNHAI--ETLRSLGKLSKQ---ARALILEALEAVGLPDPE--EVLKKYP 123
Query: 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
+SGG +R I +L++P L+ DEPT+ LD + +++++L+++ + T I I
Sbjct: 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 292 QPSSRMFHMFDKLLLISEG 310
+ + D++ ++ +G
Sbjct: 184 HDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 30/127 (23%)
Query: 175 DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-- 232
DVL +TVEE L F F +P K AR L ++GL G+IK
Sbjct: 126 ADVL--DMTVEEALEF--FENIP-------KIARKLQTLCDVGL----------GYIKLG 164
Query: 233 ----GISGGERKRTSIGYEIL---VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+SGGE +R + E+ +L +LDEPT+GL KL++VLQ++ G T
Sbjct: 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT 224
Query: 286 VITTIHQ 292
V+ H
Sbjct: 225 VVVIEHN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 30/125 (24%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK--- 232
DVL +TVEE F F +P +R L ++GL G+I+
Sbjct: 787 DVL--DMTVEEAYEF--FEAVP-------SISRKLQTLCDVGL----------GYIRLGQ 825
Query: 233 ---GISGGERKRTSIGYEIL---VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+SGGE +R + E+ +L +LDEPT+GL KL++VLQ++ G TV
Sbjct: 826 PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTV 885
Query: 287 ITTIH 291
+ H
Sbjct: 886 VVIEH 890
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 19/194 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LKR 167
LK ++ +I G+ +++G +GSGK+T+ K++ G + G I YN+ L++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITDDNFEKLRK 83
Query: 168 RIGFVTQDDVLLPQLT-VEETLVFAAFLRLPGNMNRQQKYAR-VQMILKELG-LERCRHT 224
IG V Q+ P V + + L + + R V LK++ LER +
Sbjct: 84 HIGIVFQN----PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE 139
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAG 283
+SGG+++R +I + ++PS+++LDE TS LD + L+ +++KV ++
Sbjct: 140 P------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193
Query: 284 RTVITTIHQPSSRM 297
T+I+ H S M
Sbjct: 194 ITIISITHDLSEAM 207
|
Length = 269 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 103 SLDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
++ K Y +L + I G+ +A++G SG GK+TLL+++ G L G + P
Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAP 75
Query: 161 YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-E 219
A + + QD LLP V + + L L G A L +GL +
Sbjct: 76 LAEA-REDTRLMFQDARLLPWKKVIDNVG----LGLKGQWRDAALQA-----LAAVGLAD 125
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS---ANKLIQVL 276
R + +SGG+++R ++ ++ P LLLLDEP LD+ + LI+ L
Sbjct: 126 R------ANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESL 179
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
+ + G TV+ H S + M D++LLI EG
Sbjct: 180 WQ--QHGFTVLLVTHDVSEAV-AMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-08
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV 177
G+ +A++GP+G+GKTTL+ ++ R+ D G I + I N +L++ I V QD
Sbjct: 361 GQTVAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG 419
Query: 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKG--IS 235
L + E + + A ILK T VG +G +S
Sbjct: 420 LFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRS---NGYDTLVGE---RGNRLS 473
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
GGER+R +I IL + +L+LDE TS LD + ++ + + K RT H+ S+
Sbjct: 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK-NRTTFIIAHRLST 532
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 122 GEILALMGPSGSGKT-TLLKIVG-----GRLTDDVKGNITYN-----DIPYNPALKRR-- 168
GE L ++G SGSGK+ T ++G GR + G+ T+N ++P K R
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLLAANGR----IGGSATFNGREILNLPEKELNKLRAE 97
Query: 169 -IGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
I + QD + L P + V E L+ L L M++ + + +L + + R R
Sbjct: 98 QISMIFQDPMTSLNPYMRVGEQLM--EVLMLHKGMSKAEAFEESVRMLDAVKMPEARK-R 154
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+ + SGG R+R I +L P LL+ DEPT+ LD T +++ +L ++ + T
Sbjct: 155 MKM-YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 213
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
I I + + DK+L++ G + YG AR+
Sbjct: 214 AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248
|
Length = 330 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 30/125 (24%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-G- 233
DVL +TVEE L F F +P K AR L ++GL G+IK G
Sbjct: 780 DVL--DMTVEEALEF--FEAIP-------KIARKLQTLVDVGL----------GYIKLGQ 818
Query: 234 ----ISGGERKRTSIGYEIL---VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+SGGE +R + E+ +L +LDEPT+GL KL++VL ++ G TV
Sbjct: 819 PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTV 878
Query: 287 ITTIH 291
I H
Sbjct: 879 IVIEH 883
|
Length = 935 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALK 166
D + K + + GE LA++G +G GKTTLL+ + G L D G + +++
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKWSE-------N 381
Query: 167 RRIGFVTQD-------DVLL----PQLTVE---ETLVFAAFLRLPGNMNRQQKYARVQMI 212
IG+ QD D+ L Q E E V RL + + +K +V
Sbjct: 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKV--- 438
Query: 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
+SGGE+ R G ++ P++L++DEPT+ +D S L
Sbjct: 439 ---------------------LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL 477
Query: 273 IQVLQK 278
L+K
Sbjct: 478 NMALEK 483
|
Length = 530 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 230 FIKGISGGERKRTSIGYEI---LVDP-SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+SGGE++ +++ + + P L +LDE GLD L + + + G
Sbjct: 74 TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ 133
Query: 286 VITTIHQPSSRMFHMFDKLL 305
VI H P + + DKL+
Sbjct: 134 VIVITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 47/213 (22%)
Query: 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKR 167
+H LK + I +++ + G SGSGK++L T +G Y + + ++
Sbjct: 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSL-----AFDTIYAEGQRRYVE-SLSAYARQ 60
Query: 168 RIGFVTQDDV-----LLPQLTVEETLV-------------FAAFLRLPGNMNRQQKYARV 209
+G + + DV L P + +++ +LRL +ARV
Sbjct: 61 FLGQMDKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRL--------LFARV 112
Query: 210 QMI-----LKELGLERCRHTRVGGGFIKGISGGERKR----TSIGYEILVDPSLLLLDEP 260
+ L ++GL +R +SGGE +R T IG L L +LDEP
Sbjct: 113 GIRERLGFLVDVGLGYLTLSRSAPT----LSGGEAQRIRLATQIGSG-LTG-VLYVLDEP 166
Query: 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293
+ GL ++LI+ L+++ G TV+ H
Sbjct: 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--PALKRR 168
+L+ I+ SI PG+ + L+G +GSGK+TLL L + +G+I + + +N P K R
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--NTEGDIQIDGVSWNSVPLQKWR 76
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--------R 220
F ++PQ + +F+ R + + + + +E+GL+ +
Sbjct: 77 KAF-----GVIPQ----KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQ 127
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
V GG + +S G ++ + +L +LLLDEP++ LD + QV++K
Sbjct: 128 LDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT----YQVIRKTL 181
Query: 281 K---AGRTVITTIHQ 292
K A TVI + H+
Sbjct: 182 KQAFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 98 VASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN 157
V S L + + + +L T +I PG+ + L+G +G GK+TLL ++ ++ D G+ T+
Sbjct: 3 VFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTF- 60
Query: 158 DIPYN----------PALKR-RIGFVTQDDVLLPQLTVEETLVFA-------AFLRLPGN 199
P N PAL + + +V D QL E L A A + G
Sbjct: 61 --PGNWQLAWVNQETPALPQPALEYVIDGDREYRQL--EAQLHDANERNDGHAIATIHGK 116
Query: 200 MNRQQKY---ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256
++ + +R +L LG + R + SGG R R ++ ++ LLL
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERP----VSDFSGGWRMRLNLAQALICRSDLLL 172
Query: 257 LDEPTSGLD 265
LDEPT+ LD
Sbjct: 173 LDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 41/325 (12%)
Query: 52 DIVDESSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHI 111
IV S S+++ L IFL E++E I + S+ A+ + +D
Sbjct: 599 SIVQASVSLKR---LRIFLSHEELEPD-SIERRTIKPGEGNSITVHNAT-FTWARDLPPT 653
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGF 171
L GIT SI G ++A++G G GK++LL + + D V+G++ +K + +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVH---------MKGSVAY 703
Query: 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRHTRVGGGF 230
V Q + ++ E ++F L N Q+ +L +L L T +G
Sbjct: 704 VPQQ-AWIQNDSLRENILFGKAL----NEKYYQQVLEACALLPDLEILPSGDRTEIGE-- 756
Query: 231 IKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTV 286
KG+ SGG+++R S+ + + + L D+P S +D+ + + + + +T
Sbjct: 757 -KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR 815
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLA 346
I H S D ++++S G G +E ++ + AEFL A
Sbjct: 816 ILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQRDGAF----------AEFLRTYA 863
Query: 347 TGQVTDISVPEALSASQGASDSEVL 371
+ + ++ +A E
Sbjct: 864 PDE-QQGHLEDSWTALVSGEGKEAK 887
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA---- 164
K L + + GE L ++G +GSGK+T+ K + L +G + + + +
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-EGKVYVDGLDTSDEENLW 81
Query: 165 -LKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQK--YARVQMILKELGL-E 219
++ + G V Q+ D + VEE + F P N+ + RV LK++G+ E
Sbjct: 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGIPPEEIRERVDESLKKVGMYE 136
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
RH +SGG+++R +I + + P ++ DEPT+ LD + +++ ++++
Sbjct: 137 YRRHAP------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190
Query: 280 AK-AGRTVITTIH 291
K G T+I H
Sbjct: 191 NKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 33/222 (14%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGG--RLTDDVKGNITYNDIPYN--PALK-RRIGFVT-- 173
EI++L+GP+G+GKTT+ + G + T G I P + R+G V
Sbjct: 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTF 86
Query: 174 QDDVLLPQLTVEETL-----------VFAAFLRLPG-NMNRQQKYARVQMILKELGLERC 221
Q L ++TV E L +F+ L+ P + R L+ +GL
Sbjct: 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL---DSTSANKLIQVLQK 278
+ + G ++ G+++R I ++ P +L+LDEP +GL ++ ++LI L+
Sbjct: 147 ANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN 201
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ TV+ H M + D++ ++++G P+ G E
Sbjct: 202 --EHNVTVLLIEHDMKLVM-GISDRIYVVNQGTPLANGTPEE 240
|
Length = 255 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 38/195 (19%)
Query: 122 GEILALMGPSGSGKT-TLLKIVGGRLTDDVKGNITYNDIPYNPALKRR----IGFVTQDD 176
GE LA++G SGSGK+ T L ++ RL + G + + + L+RR I Q
Sbjct: 42 GETLAIVGESGSGKSVTALALM--RLLEQAGGLVQCDKM----LLRRRSRQVIELSEQSA 95
Query: 177 V--------------------LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
L P TV E + A +RL +R++ + +L ++
Sbjct: 96 AQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASREEAMVEAKRMLDQV 153
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN---KLI 273
+ + + + +SGG R+R I + P++L+ DEPT+ LD T +LI
Sbjct: 154 RIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211
Query: 274 QVLQKVAKAGRTVIT 288
+VLQK G IT
Sbjct: 212 KVLQKEMSMGVIFIT 226
|
Length = 623 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----PALKRRIGFVTQD 175
P I ALMG +G+GK+TLLK + G D G+I + + AL+ I V Q+
Sbjct: 23 PHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSKEALENGISMVHQE 81
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235
L+ Q +V + + + +++ + Y + I EL ++ +V +S
Sbjct: 82 LNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLS 136
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295
+ + I + ++++DEPTS L N L +++K+ + G ++ H+
Sbjct: 137 VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK-ME 195
Query: 296 RMFHMFDKLLLISEG 310
+F + D++ ++ +G
Sbjct: 196 EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-07
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 234 ISGGERKRTSIGYEILV---DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
+SGGE +R + YE+L P+L +LDEPT+GL + LI VLQ + G TV+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 291 H 291
H
Sbjct: 870 H 870
|
Length = 1809 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 8e-07
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 102 LSLDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY--N 157
+ LD DY +L+ I+ + G +L L G +G+GKTTLLK++ G L + KG I +
Sbjct: 5 IELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQ 63
Query: 158 DIPYN-PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
I + ++++ FV + P LT+ E ++ ++ + + EL
Sbjct: 64 SIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY------------DIHFSPGAVGITEL 111
Query: 217 GLERCRHTRVGG--GFIKG-ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
CR + + G +S G++++ ++ + L LLDEP LD S +I
Sbjct: 112 ----CRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
Query: 274 QVLQKVAKAGRTVITTIHQ 292
+Q+ G V+ T HQ
Sbjct: 168 TKIQEHRAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 31/225 (13%)
Query: 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY--NDIPYNPALKRR-- 168
G+T + GE L ++G SG GK+T + + G L G + + D+ + R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDLLGMKDDEWRAV 96
Query: 169 ---IGFVTQDDV--LLPQLTVEETLVFAAFLRL--PGNMNRQQKYARVQMILKELGL--- 218
I + QD + L P++T+ E + A LR P ++RQ+ RV+ ++ ++GL
Sbjct: 97 RSDIQMIFQDPLASLNPRMTIGE--IIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPN 153
Query: 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
R H SGG+ +R I ++++P L++ DEP S LD + +++ +L
Sbjct: 154 LINRYPHE---------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204
Query: 277 QKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
Q++ + G ++I H + + H+ D++L++ G+ V G E
Sbjct: 205 QQLQREMGLSLIFIAHDLAV-VKHISDRVLVMYLGHAVELGTYDE 248
|
Length = 331 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 235 SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
SGGE+ R ++ +L +P+LLLLDEPT+ LD S L + L++
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 53/219 (24%), Positives = 111/219 (50%), Gaps = 21/219 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-------TYNDIPYNPA 164
+K ++ ++ G+ LA++G +GSGK+TL K++ G + + G + + D Y
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYR-- 85
Query: 165 LKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
+RI + QD L P+ + + L F LRL ++ +Q+ ++ L+++GL
Sbjct: 86 -SQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGL-LPD 141
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAK 281
H + ++ G+++R + +++ P +++ DE + LD + ++LI + L+ K
Sbjct: 142 HASY---YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
G + I + Q M H+ D++L++ +G V G +
Sbjct: 199 QGISYI-YVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236
|
Length = 267 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 17/196 (8%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
QL + + K++ ++ + P I + G +G GK++LL+++ G + GNI Y +
Sbjct: 6 QLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCN 63
Query: 161 YNPALKRRIGFVTQDDVLLPQLTVEETLVF-AAFLRLPGNMNRQQKYARVQMILKELGLE 219
N K ++ + L ++TV E L F + + Y ++ +L E
Sbjct: 64 INNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD----E 119
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+C +S G +K +I I L LLDE + L + + L ++
Sbjct: 120 KCYS----------LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMK 169
Query: 280 AKAGRTVITTIHQPSS 295
A +G V+ + H SS
Sbjct: 170 ANSGGIVLLSSHLESS 185
|
Length = 195 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---PALKRRIGF 171
I+ + GEIL L G G+G+T L + + G L G I N N A + G
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG-LRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 172 VTQDDVLLPQLTVEETLVFAAFLRLP----------GNM----NRQQKYARVQMILKELG 217
V LP E+ +L P ++ A ++ + L
Sbjct: 341 V-----YLP----EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN 391
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
+ + H + +SGG +++ I + P LL++DEPT G+D ++ N + Q+++
Sbjct: 392 I-KFNHAEQA---ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447
Query: 278 KVAKAGRTVI 287
+A V+
Sbjct: 448 SIAAQNVAVL 457
|
Length = 510 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 20/187 (10%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+L+ + I PG+++A++G SG+GKTTLL+++ G + Y P +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG-------RGEEKYRPDSGKVEV 450
Query: 171 FVTQDDVLLP---QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227
L+P + E + G++N + IL GL R
Sbjct: 451 PKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE------ILNRAGLSDAVLYRRK 504
Query: 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTV 286
+S G+++R + + P++LL+DE + LD +A ++ + + ++A +AG T+
Sbjct: 505 ---FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 287 ITTIHQP 293
I H+P
Sbjct: 562 IVVTHRP 568
|
Length = 593 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN----DIPYNPALKR 167
L I I G++ ++G G GK++LL + G + ++G + ++ P A +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRS 75
Query: 168 R----IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCR 222
R + + Q LL TVEE + F + P N R + + ++ L
Sbjct: 76 RNRYSVAYAAQKPWLL-NATVEENITFGS----PFNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVA 280
T +G I +SGG+R+R + + + +++ LD+P S LD ++ L+Q +L+ +
Sbjct: 131 QTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 281 KAGRTVITTIHQ 292
RT++ H+
Sbjct: 190 DDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 50/174 (28%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K ++ ++ + PG I+ ++GP+G+GK+TL +++ G+ D G I + +
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGE-------TVK 386
Query: 169 IGFVTQD-DVLLPQLTV-EETLVFAAFLRLPGN--MNR-------------QQKYARVQM 211
+ +V Q D L P TV EE ++L G + QQK
Sbjct: 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQL-GKREVPSRAYVGRFNFKGSDQQK------ 439
Query: 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+VG +SGGER R + + ++LLLDEPT+ LD
Sbjct: 440 -------------KVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 53/200 (26%), Positives = 103/200 (51%), Gaps = 17/200 (8%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY---NP--ALKRRIGFVTQD- 175
GEIL + G G+G+T L++ + G +G I + P NP A+ + I V +D
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347
Query: 176 --DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKG 233
D ++P + V + + AA R G +R A ++ IL+ + + + T I
Sbjct: 348 KRDGIVPVMGVGKNITLAALDRFTG-GSRIDDAAELKTILESIQRLKVK-TASPELAIAR 405
Query: 234 ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293
+SGG +++ + +L++P +L+LDEPT G+D + ++ +++ ++ + G +I
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI---- 461
Query: 294 SSRM---FHMFDKLLLISEG 310
SS + + D++L++ EG
Sbjct: 462 SSELPEVLGLSDRVLVMHEG 481
|
Length = 506 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 44/194 (22%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-TYNDIP-YNPALKRRIGFVTQD--- 175
PG+++ ++GP+G GK+T LKI+ G L K N+ Y D P ++ +KR G Q+
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGEL----KPNLGRYEDPPSWDEVIKRFRGTELQNYFK 154
Query: 176 --------DVLLPQL----------TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217
V PQ V E L R + +++ LG
Sbjct: 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELL--------KKVDER----GKFDEVVERLG 202
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
LE V + +SGGE +R +I +L D + DEP+S LD +V++
Sbjct: 203 LEN-----VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIR 257
Query: 278 KVAKAGRTVITTIH 291
++A+ G+ VI H
Sbjct: 258 ELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV 177
+I GE++ L+G +GSGK+TL ++ G L G I + P + +D
Sbjct: 345 TIKRGELVFLIGGNGSGKSTLAMLLTG-LYQPQSGEILLDGKPVSAE--------QLED- 394
Query: 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRHTRVGGGFIK--GI 234
+L + VF+ + + + K A Q+I K L LE T + G +
Sbjct: 395 -YRKLF---SAVFSDYHLFDQLLGPEGK-ASPQLIEKWLQRLELAHKTSLNDGRFSNLKL 449
Query: 235 SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQP 293
S G++KR ++ +L + +L+LDE + D + QVL + K G+T+ H
Sbjct: 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH-- 507
Query: 294 SSRMFHMFDKLLLISEG 310
F D+LL + G
Sbjct: 508 DDHYFIHADRLLEMRNG 524
|
Length = 546 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
I +SGG +++ IG +L P +L+LDEPT G+D + ++ Q++ ++AK + +I
Sbjct: 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII- 447
Query: 291 HQPSSRMFHMF---DKLLLISEG 310
SS M + D++L++S G
Sbjct: 448 ---SSEMPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 48/197 (24%), Positives = 99/197 (50%), Gaps = 34/197 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL--KRR 168
+L+ ++ S+ G+ + L+G +GSGK+TLL + L+ + G I + + +N R
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE--GEIQIDGVSWNSVTLQTWR 1291
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM--ILKELGL-------- 218
F ++PQ + +F+ R N++ ++++ ++ + +E+GL
Sbjct: 1292 KAF-----GVIPQ----KVFIFSGTFRK--NLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
++ V GG++ +S G ++ + IL +LLLDEP++ LD + +Q+++K
Sbjct: 1341 DKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT----LQIIRK 1394
Query: 279 VAK---AGRTVITTIHQ 292
K + TVI + H+
Sbjct: 1395 TLKQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 32/163 (19%)
Query: 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPTSGLDSTSA 269
IL +LGL R + +SGGE++RT++ + + +LDEP+ GL
Sbjct: 459 ILIDLGLPYLTPERA----LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDT 514
Query: 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLG 329
+KLI V++K+ G TV+ H +M + D+++ I G ++ G
Sbjct: 515 HKLINVIKKLRDQGNTVLLVEHD--EQMISLADRIIDIGPGAGIFGG------------- 559
Query: 330 FIPEIAMN--PAEFLL--DLATGQV----TDISVPEALSASQG 364
E+ N P EFL D T + I +PE + S G
Sbjct: 560 ---EVLFNGSPREFLAKSDSLTAKYLRQELTIPIPEKRTNSLG 599
|
Length = 1809 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 53/179 (29%), Positives = 74/179 (41%), Gaps = 60/179 (33%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI---TYNDIPYNPAL 165
K ++K + + G+ +AL+GP+G GKTTLLK++ G+L D G I T ++ Y
Sbjct: 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHCGTKLEVAY---- 386
Query: 166 KRRIGFVTQDDVLLPQLTVEETLV------------------FAAFLRLPGNMNRQQKYA 207
F L P+ TV + L FL P K A
Sbjct: 387 -----FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP-------KRA 434
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS-LLLLDEPTSGLD 265
T V K +SGGER R + + + PS LL+LDEPT+ LD
Sbjct: 435 M---------------TPV-----KALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
K + L I + G ++A++G +G GKT+L+ + G L ++ +
Sbjct: 627 KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV---------I 677
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-HT 224
+ + +V Q + TV + ++F + P + R ++ V + +L L T
Sbjct: 678 RGTVAYVPQVSWIF-NATVRDNILFGS----PFDPERYERAIDVTALQHDLDLLPGGDLT 732
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK--- 281
+G + ISGG+++R S+ + + + + D+P S LD+ QV K K
Sbjct: 733 EIGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR---QVFDKCIKDEL 788
Query: 282 AGRTVITTIHQPSSRMFHMF---DKLLLISEG 310
G+T + +Q H D+++L+ EG
Sbjct: 789 RGKTRVLVTNQ-----LHFLSQVDRIILVHEG 815
|
Length = 1622 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 63/197 (31%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLP 180
PGE++ ++GP GSGKTTL + + L G I +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG---------------------- 38
Query: 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK 240
E ++ +L + +K + + L L R +
Sbjct: 39 -----EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK--------------- 78
Query: 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ------VLQKVAKAGRTVITTIHQP- 293
P +L+LDE TS LD+ L+ +L ++ TVI T +
Sbjct: 79 -----------PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 294 ---SSRMFHMFDKLLLI 307
+ + FD+ +++
Sbjct: 128 DLGPALLRRRFDRRIVL 144
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 23/159 (14%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKR- 167
+ IL I ++ PG + L+G +G+GK+TL+K++ G L V G I L +
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSGEI---------GLAKG 374
Query: 168 -RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
++G+ Q L L +E+ + RL Q+ ++ L G + + T
Sbjct: 375 IKLGYFAQHQ--LEFLRADESPL-QHLARLAPQELEQK----LRDYLGGFGFQGDKVTEE 427
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
F SGGE+ R + + P+LLLLDEPT+ LD
Sbjct: 428 TRRF----SGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD------DVKGNITYNDI 159
K K L I I G ++A++G +G GKT+L+ + G L+ ++G++ Y
Sbjct: 627 KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--- 683
Query: 160 PYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLR---LPGNMNRQQKYAR---VQMIL 213
+PQ++ +F A +R L G+ ++Y R V +
Sbjct: 684 -------------------VPQVS----WIFNATVRENILFGSDFESERYWRAIDVTALQ 720
Query: 214 KELGLERCRH-TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
+L L R T +G + ISGG+++R S+ + + + + D+P S LD+ A+++
Sbjct: 721 HDLDLLPGRDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
K G+T + +Q + D+++L+SEG
Sbjct: 780 FDSCMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ 181
G+++ L+G +GSGK+TL I+GG L+ G + N + + L Q
Sbjct: 50 GDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNG---------EVSVIAISAGLSGQ 99
Query: 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFI----KGISGG 237
LT E + F M ++K +K + + + + G FI K S G
Sbjct: 100 LTGIENIEFKMLC-----MGFKRKE------IKAMTPKIIEFSEL-GEFIYQPVKKYSSG 147
Query: 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
R + I V+P +L++DE S D T A K + + + + +T+ H
Sbjct: 148 MRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201
|
Length = 264 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 37/185 (20%)
Query: 115 ITGSICPGEILALMGPSGSGKT-TLLKIVG-----GRLTDDVKGNITYN--DIPYNPALK 166
I+ S+ GE++ ++G SGSGK+ + L I+G GR+ + + +N D+ +
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE---KLEFNGQDLQRISEKE 82
Query: 167 RR------IGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG- 217
RR + + QD + L P TV ++ A +++ N++ + R +L ++G
Sbjct: 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVGI 140
Query: 218 ------LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
L+ H +SGG +R I I P LL+ DEPT+ LD T +
Sbjct: 141 PDPASRLDVYPHQ---------LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ 191
Query: 272 LIQVL 276
+I++L
Sbjct: 192 IIELL 196
|
Length = 326 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 39/273 (14%)
Query: 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMG 129
+KFE V K ++ D +K + + S D +Y + L I+ + GEI+ ++G
Sbjct: 5 VKFEHVTKKYKMYNKPFDK--LKDLFFR-----SKDGEYHYALNNISFEVPEGEIVGIIG 57
Query: 130 PSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189
+GSGK+TL ++ G +T KG + DI + AL + L QLT E
Sbjct: 58 LNGSGKSTLSNLIAG-VTMPNKGTV---DIKGSAAL------IAISSGLNGQLTGIEN-- 105
Query: 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL 249
+ L G M K +++ I+ E+ +E + +K S G + R +
Sbjct: 106 ----IELKGLMMGLTK-EKIKEIIPEI-IEFADIGKFIYQPVKTYSSGMKSRLGFAISVH 159
Query: 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309
++P +L++DE S D T K + + + + G+T I I S++ K L +
Sbjct: 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKT-IFFISHSLSQVKSFCTKALWL-- 216
Query: 310 GYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342
+YG+ +E G I E+ + EFL
Sbjct: 217 ----HYGQVKE-------YGDIKEVVDHYDEFL 238
|
Length = 549 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 26/196 (13%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV 177
GE+L L+G +GSGK+TL ++ G L G I + P ++ V D
Sbjct: 349 GELLFLIGGNGSGKSTLAMLLTG-LYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTD-- 405
Query: 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGI--S 235
F F +L G + A V+ L+ L + + G I + S
Sbjct: 406 ------------FHLFDQLLGPEGKPANPALVEKWLERLKMA--HKLELEDGRISNLKLS 451
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294
G++KR ++ + + +LLLDE + D + QVL + + G+T+ H
Sbjct: 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511
Query: 295 SRMFHMFDKLLLISEG 310
F D+LL + G
Sbjct: 512 --YFIHADRLLEMRNG 525
|
Length = 547 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 36/190 (18%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDV---KGNITYNDIPYN---PALKRRIGFVTQ 174
G++L L+GP+G GK+T LKI+ G+L ++ +++I L+ + +
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 175 DDV----------LLPQL---TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
DV L+P+ V E L ++ + ++ ++ +L L
Sbjct: 85 GDVKVIVKPQYVDLIPKAVKGKVGELL------------KKKDERGKLDELVDQLELRHV 132
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
I +SGGE +R +I + D DEP+S LD ++++++A+
Sbjct: 133 LDRN-----IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 282 AGRTVITTIH 291
V+ H
Sbjct: 188 DDNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 32/210 (15%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGG------RLTDDVKGNITYNDIPY---NPALKRR 168
++ GEI L+G SGSGK+ + K + G R+T D + ++DI +P +R+
Sbjct: 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD---RMRFDDIDLLRLSPRERRK 85
Query: 169 -IG------FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM-------ILK 214
+G F L P V L+ +PG + + + R +L
Sbjct: 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQN----IPGWTYKGRWWQRFGWRKRRAIELLH 141
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+G++ H F ++ GE ++ I + P LL+ DEPT+ ++ T+ ++ +
Sbjct: 142 RVGIKD--HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR 199
Query: 275 VLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304
+L ++ + T I I + DK+
Sbjct: 200 LLTRLNQNNNTTILLISHDLQMLSQWADKI 229
|
Length = 330 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 29/191 (15%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K +L+ ++ S+ G++ ++G +GSGK+TLL+ + + + +G + +R
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVW---------AERS 722
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-----GLERCRH 223
I +V Q ++ TV ++F + R RV + +L GLE
Sbjct: 723 IAYVPQQAWIM-NATVRGNILFFD----EEDAARLADAVRVSQLEADLAQLGGGLE---- 773
Query: 224 TRVGGGFIKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
T +G KG+ SGG++ R S+ + + + LLD+P S LD+ ++++ A
Sbjct: 774 TEIGE---KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830
Query: 282 AGRTVITTIHQ 292
AG+T + HQ
Sbjct: 831 AGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQD- 175
GEI+ L G G+G++ L+K++ G T G + + P + A++ I +D
Sbjct: 279 GEIVGLFGLVGAGRSELMKLLYG-ATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR 337
Query: 176 --DVLLPQLTVEETLVFAA---FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
+ ++P +V + + +A LR +N + + ++ L ++ T
Sbjct: 338 KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----TPSREQL 393
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
I +SGG +++ +G + D ++LLDEPT G+D + +++ V+ ++A G V+
Sbjct: 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450
|
Length = 501 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 52/181 (28%)
Query: 119 ICPGEILALMGPSGSGKTTLLKIVGGR-LTDDVKGNITYN----------DIPYNPA--- 164
I E + L+G +G+GK+TL+KI+ G L DD G I Y D P N
Sbjct: 26 IEDNERVCLVGRNGAGKSTLMKILNGEVLLDD--GRIIYEQDLIVARLQQDPPRNVEGTV 83
Query: 165 --------------LKR-----RIGFVTQDDVLLPQL-TVEETLVFAAFLRLPGNMNRQQ 204
LKR + + L +L ++E L + N Q
Sbjct: 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL---------DHHNLWQ 134
Query: 205 KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264
R+ +L +LGL+ + +SGG ++ ++G ++ +P +LLLDEPT+ L
Sbjct: 135 LENRINEVLAQLGLD-------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHL 187
Query: 265 D 265
D
Sbjct: 188 D 188
|
Length = 635 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 39/186 (20%)
Query: 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVL 178
+ G+ A +G +GSGK+ L + + G L + G +R+ F +
Sbjct: 26 LNAGDSWAFVGANGSGKSALARALAGELPL-LSG-------------ERQSQFSHITRLS 71
Query: 179 LPQLTVEETLVFAAFLRLPGNM-----------------NRQQKYARVQMILKELGLERC 221
QL + LV + R +M + + AR + + ++ G+
Sbjct: 72 FEQL---QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITAL 128
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
R K +S GE ++T + ++ +P LL+LDEP GLD S +L ++L + +
Sbjct: 129 LDRR-----FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183
Query: 282 AGRTVI 287
+G T++
Sbjct: 184 SGITLV 189
|
Length = 490 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 18/191 (9%)
Query: 470 LIFYICIFWTSSSIFGAVYVFPFEKIYLVKER-KADMYRLSVYYVCSTLCDMVAHVFYPT 528
L+ + EK +KER Y + L D++ +
Sbjct: 97 LLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGL---I 153
Query: 529 IFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILML 588
++I+ + G L L LL + G L G+ + + A ++ S++++L
Sbjct: 154 QLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILL 213
Query: 589 F--LLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQE 646
G + + ++P F+QW+ + + LL + + L
Sbjct: 214 LSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL------RIIYGDLAEI------LLS 261
Query: 647 VWVLLGMALAY 657
+ +LL +
Sbjct: 262 LIILLLFGVVL 272
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 234 ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST---SANKLIQVLQKVAKAGRTVITTI 290
+SGGE +R +I +L + + L DEP++ LD +A + I+ L + +T +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL--SEEGKKTALVVE 129
Query: 291 HQPSSRMFHMFDKL---LLISEGYPVYYGKA------RESMEYF 325
H + D L + + EG P YG A RE + F
Sbjct: 130 HD-----LAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRF 168
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVK---GNITYNDIPYNPA-LK-RRIGFVTQD- 175
G +LAL+G SGSGK+ G L V+ G + + P P L+ R+I + Q+
Sbjct: 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88
Query: 176 -DVLLPQLT----VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230
P T ET A + + A + L+ +GLE RV +
Sbjct: 89 RSAFNPLHTMHTHARETC--LALGKPADD-------ATLTAALEAVGLENAA--RVLKLY 137
Query: 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+SGG +R I +L + ++ DEPT+ LD + +++ +L+ + +
Sbjct: 138 PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 33/129 (25%)
Query: 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE---------------LGLERCRHTR 225
+L++ E F L L ++K A +LKE L L R T
Sbjct: 435 ELSIREAHEFFNQLTLTP---EEKKIAE--EVLKEIRERLGFLIDVGLDYLSLSRAAGT- 488
Query: 226 VGGGFIKGISGGERKRTSIGYEI---LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+SGGE +R + +I L L +LDEP+ GL +LI L+++
Sbjct: 489 --------LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRRLINTLKRLRDL 539
Query: 283 GRTVITTIH 291
G T+I H
Sbjct: 540 GNTLIVVEH 548
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 22/205 (10%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGF 171
L I I G+I+ ++G +G GK+TL K+ G L +G I + +
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG-LYIPQEGEILLDGAAVSAD------- 409
Query: 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-KYARVQMILKELGLERCRHTRVGGGF 230
++DD L F F L G + Q L+ L + + GGF
Sbjct: 410 -SRDD--YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKIEDGGF 465
Query: 231 --IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI---QVLQKVAKAGRT 285
+S G++KR ++ L D +LL DE + D A K ++L + + G+T
Sbjct: 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAA--DQDPAFKRFFYEELLPDLKRQGKT 523
Query: 286 VITTIHQPSSRMFHMFDKLLLISEG 310
+I H + F + D+++ ++ G
Sbjct: 524 IIIISH--DDQYFELADQIIKLAAG 546
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 230 FIKGISGGERKRTSIG---YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
IKGIS G ++ ++ L SLLL+DEP +GL KL+++L+++++ G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 287 ITTIHQPS 294
I T H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-04
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 30/121 (24%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-G- 233
DVL +TVEE L F F +P K AR L ++GL G+IK G
Sbjct: 788 DVL--DMTVEEALEF--FEAIP-------KIARKLQTLVDVGL----------GYIKLGQ 826
Query: 234 ----ISGGERKRTSIGYEILVDP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+SGGE +R + E+ +L +LDEPT+GL KL++VL ++ G TV
Sbjct: 827 PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTV 886
Query: 287 I 287
+
Sbjct: 887 V 887
|
Length = 943 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 21/199 (10%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY---- 161
+D +L+ I S+ +AL+G +GSGK+TL ++ G +G I + P
Sbjct: 351 RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSLS 409
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI-LKEL--GL 218
+ L++ + V QD V+L F A + L +++ +Q + ++ + L EL L
Sbjct: 410 HSVLRQGVAMVQQDPVVLAD-------TFLANVTLGRDISEEQVWQALETVQLAELARSL 462
Query: 219 ERCRHTRVGGGFIKG--ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
+T +G +G +S G+++ ++ ++ P +L+LDE T+ +DS + + Q L
Sbjct: 463 PDGLYTPLGE---QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519
Query: 277 QKVAKAGRTVITTIHQPSS 295
V + T++ H+ S+
Sbjct: 520 AAVREH-TTLVVIAHRLST 537
|
Length = 592 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 32/203 (15%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG------RLTDDVKGNITYNDIPYN-- 162
+ ++ ++ GEI L+G SGSGK+ + K + G R+T D + ++DI
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD---RMRFDDIDLLRL 78
Query: 163 PALKRR------IGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQ-------KYA 207
+RR + + Q+ L P V L+ +P + + +
Sbjct: 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN----IPAWTYKGRWWQRFGWRKR 134
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
R +L +G++ H + + ++ GE ++ I + P LL+ DEPT+ ++ T
Sbjct: 135 RAIELLHRVGIKD--HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPT 192
Query: 268 SANKLIQVLQKVAKAGRTVITTI 290
+ ++ ++L ++ + T I I
Sbjct: 193 TQAQIFRLLSRLNQNSNTTILLI 215
|
Length = 330 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.001
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 50/165 (30%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD-D 176
S+ PG I+ ++GP+G+GK+TL K++ G+ D G I + ++ +V Q D
Sbjct: 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGE-------TVKLAYVDQSRD 397
Query: 177 VLLPQLTV-EETLVFAAFLRLPGN--MN-R------------QQKYARVQMILKELGLER 220
L P TV EE +++ GN + R QQK
Sbjct: 398 ALDPNKTVWEEISGGLDIIKV-GNREIPSRAYVGRFNFKGGDQQK--------------- 441
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+VG +SGGER R + + ++LLLDEPT+ LD
Sbjct: 442 ----KVG-----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
T VG K +SGG+++R SI I+ +P +L+LDE TS LD+ S L+Q K
Sbjct: 571 TLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLDNKS-EYLVQKTINNLKGN 628
Query: 284 RTVITTI 290
IT I
Sbjct: 629 ENRITII 635
|
Length = 1466 |
| >gnl|CDD|130314 TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 528 TIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILM 587
I + + + +A K TL +V + G G A + S++ +I S++++
Sbjct: 109 AIILALSFIVAILK--PSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLML 166
Query: 588 -LFLLTGGYY-VQHIPKFMQWLKYLSFLYY 615
+F L+G +Y + +P +MQ L ++ L Y
Sbjct: 167 PMFFLSGAFYPITTMPAWMQGLAKINPLTY 196
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 236 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH-TRVGGGF------IKG 233
++++ + L F F L + ++ ILKE+ ER VG G+
Sbjct: 428 EMSIADALEF--FENLKLSEKEKKIAEP---ILKEI-KERLGFLVDVGLGYLTLSRSAGT 481
Query: 234 ISGGERKR----TSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
+SGGE +R T IG L L +LDEP+ GL +LI+ L+++ G TVI
Sbjct: 482 LSGGEAQRIRLATQIGSG-LTG-VLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537
|
Length = 935 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 32/189 (16%)
Query: 122 GEILALMGPSGSGKTTLLKIVG-------GRLTDDVKGNITYNDIPYNPALKRRIGFVTQ 174
G L + GP+G GK++L +I+G GRLT KG + Y +P P + +
Sbjct: 478 GNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFY--VPQRPYMTLG---TLR 532
Query: 175 DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKG- 233
D ++ P + E+ R R ++ IL + L G ++
Sbjct: 533 DQIIYPD-SSED------MKR------RGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579
Query: 234 ---ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
+SGGE++R ++ P +LDE TS + + ++ ++ G T+ +
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVS 636
Query: 291 HQPSSRMFH 299
H+ S +H
Sbjct: 637 HRKSLWKYH 645
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV 184
+A++GP+G GK+T+LK++ G L G + + A K R+ +Q V L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL-QPSSGTV------FRSA-KVRMAVFSQHHVDGLDLSS 589
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF----IKGISGGERK 240
L PG + +++ L G V G + +SGG++
Sbjct: 590 NPLLYMMRCF--PGVPEQ-----KLRAHLGSFG--------VTGNLALQPMYTLSGGQKS 634
Query: 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
R + P +LLLDEP++ LD + LIQ L
Sbjct: 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
|
Length = 718 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 674 | |||
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.98 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.98 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.93 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.93 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.88 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.85 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.85 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.85 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.83 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.82 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.82 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.8 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.79 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.79 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.79 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.79 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.77 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.77 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.76 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.76 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.73 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.73 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.67 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.64 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.63 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.6 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.54 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.52 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.5 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.46 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.46 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.43 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.4 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.37 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.35 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.35 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.34 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.33 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.29 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.28 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.26 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.26 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.26 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.24 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.23 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.22 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.22 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.2 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.2 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.19 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.19 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.16 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.14 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.1 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.09 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.08 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.07 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.06 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.04 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.02 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.01 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.96 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.95 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.91 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.9 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.88 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.88 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.81 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.77 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.77 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.77 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.77 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.73 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.69 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.63 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.62 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.59 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.56 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.55 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.53 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.52 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.5 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.49 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.45 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.44 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.43 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.38 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.33 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.31 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.26 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.21 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.2 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.2 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.19 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.19 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.11 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.07 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.07 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.05 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.05 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.04 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.03 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.02 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.01 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.99 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.99 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 97.95 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 97.94 |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-106 Score=927.33 Aligned_cols=594 Identities=41% Similarity=0.750 Sum_probs=488.4
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhh--hhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVS--KVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIV 142 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L 142 (674)
..++.++|.|++|+++................ ...++++..++++++|+|+|+++++||++||+||||||||||||+|
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 35789999999999865421100010000000 0112233334457899999999999999999999999999999999
Q ss_pred HcCCCCC-CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 143 GGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 143 ~G~~~~~-~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+|+.++. .+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.++
T Consensus 115 aG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 115 AGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred hCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9987542 589999999998665667899999999999999999999999877765555666677889999999999999
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.++|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999998889999999999999999999999999999999999999999999999999889999999999987789999
Q ss_pred CEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh
Q 044602 302 DKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ 381 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (674)
|++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+.......+ .......+.+.+.|++.
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE-------REKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc-------cccchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999875321100000 00111223344455432
Q ss_pred cChhhHhhhhc--cCCCchhh-----hhhh-hccCCccCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 044602 382 LEPKEKEEHHR--NKKIPEHL-----QLAI-QVKKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLW 453 (674)
Q Consensus 382 ~~~~~~~~~~~--~~~~~~~~-----~~~~-~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~all~G~lf 453 (674)
..+......+. ........ .... ..+..+..+||+|+.+|++|+++++||+.+...|+++++++|+++|++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 348 LAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred ccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111100 00000000 0000 0112356789999999999999998888888899999999999999999
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044602 454 WKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVI 533 (674)
Q Consensus 454 ~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i 533 (674)
|+++ +.++++|.|++||+++++++.+++++++.|+.||++|+|||.+|+|++++|++|++++|+|+.++.+++|++|
T Consensus 428 ~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i 504 (659)
T PLN03211 428 WHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504 (659)
T ss_pred hcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9985 3689999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccCCChhhhHhhHhhcHH
Q 044602 534 VYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFL 613 (674)
Q Consensus 534 ~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~~~~Wl~yiSp~ 613 (674)
+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||++++||+||+|++|+||+
T Consensus 505 ~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTT 584 (659)
T ss_pred eeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc--c---------CCCCCC-----CCC--CccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 044602 614 YYGFRLLLKP--R---------GCRNLQ-----SSP--SFDTVNLSGGLQEVWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 614 ~Ya~eal~~n--~---------gc~~~~-----~~~--~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 668 (674)
+||||+++.| . +|.... .+. .....+..+.|.|+++|++++++||+++|++|+++
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 2 253210 011 11222334689999999999999999999999853
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-104 Score=905.98 Aligned_cols=572 Identities=40% Similarity=0.688 Sum_probs=492.9
Q ss_pred CCCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 64 RPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 64 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
...++.++|+|+++..+.+. ...+++|+|||++++|||++|||||||||||||||+|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~----------------------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~La 77 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKS----------------------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALA 77 (613)
T ss_pred ccccceeEEEEEEEEecCCC----------------------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHh
Confidence 34567899999999776421 12478999999999999999999999999999999999
Q ss_pred cCCCC--CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 144 GRLTD--DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 144 G~~~~--~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
|+..+ ..+|+|++||++.+. .+++.+|||.|||.++|+|||+|+|.|++.+|+|...++++++++|+++++++||.+
T Consensus 78 gr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~ 157 (613)
T KOG0061|consen 78 GRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK 157 (613)
T ss_pred ccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 99864 579999999977654 688999999999999999999999999999999998899999999999999999999
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
++|+++|+...|++||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++
T Consensus 158 ~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~l 237 (613)
T KOG0061|consen 158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFEL 237 (613)
T ss_pred hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHh
Q 044602 301 FDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKT 380 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (674)
||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.+ +... + ..+..........++.
T Consensus 238 FD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~--~~~~-~-------~~~~~~~~~~~~~~~~ 307 (613)
T KOG0061|consen 238 FDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD--SGTR-E-------LEEAVRIAKLINKFSQ 307 (613)
T ss_pred HhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC--CCch-h-------HHhHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999853 1000 0 0000111111111111
Q ss_pred hcChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 044602 381 QLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKSQST 459 (674)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~~~~ 459 (674)
.....+...... .........+.....+||.|+++|++|.+++. |++.+...|+++.+++|+++|.+||+++.+
T Consensus 308 --~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~ 382 (613)
T KOG0061|consen 308 --TDNLKKTLEALE---KSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND 382 (613)
T ss_pred --cchhhhhHHHHh---hhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 000000000000 00000000011116899999999999999995 556778899999999999999999999875
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 044602 460 TEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAG 539 (674)
Q Consensus 460 ~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~g 539 (674)
..++++|.|++||.+.++.+.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|
T Consensus 383 -~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~g 461 (613)
T KOG0061|consen 383 -AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVG 461 (613)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 4688899999999999998999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHH
Q 044602 540 FKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGF 617 (674)
Q Consensus 540 l~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~ 617 (674)
++++..+|++|++++++..++++++++++++++|+...|+.+++++++++++|+||+++ +||.||+|++|+||++|+|
T Consensus 462 l~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~ 541 (613)
T KOG0061|consen 462 LNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAF 541 (613)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhhcc--c----CCCCCC-------CCCCccccCC--CCchHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 044602 618 RLLLKP--R----GCRNLQ-------SSPSFDTVNL--SGGLQEVWVLLGMALAYRLCAYFCLRKRINKCH 673 (674)
Q Consensus 618 eal~~n--~----gc~~~~-------~~~~~~~~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 673 (674)
|+++.| . .|...+ +...++..++ .+.|.|++++++++++||+++|++|++|.+++.
T Consensus 542 e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 542 EALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 999999 2 143211 1112344454 678999999999999999999999999998753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-100 Score=879.70 Aligned_cols=554 Identities=32% Similarity=0.582 Sum_probs=475.8
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CccEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD--VKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~--~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lT 183 (674)
+.+++|+|+|+++++||++||+|||||||||||++|+|+.++. .+|+|.+||.+++. .+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3477999999999999999999999999999999999987542 47999999999864 57788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCc-cCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF-IKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+.. .++|||||||||+||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887777778888899999999999999999999753 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~ 342 (674)
|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|+.||++.|||||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhh--hhhhhccCCccCCHHHHHH
Q 044602 343 LDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHL--QLAIQVKKDWTLSWWDQFH 419 (674)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~Q~~ 419 (674)
+++++.+..+. ....+..+.+.+.|++. ......+............ ........++..+|++|+.
T Consensus 276 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 344 (617)
T TIGR00955 276 VQVLAVIPGSE-----------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFY 344 (617)
T ss_pred HHHhhcCcccc-----------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHH
Confidence 99987432110 00112223334444332 1111111111000000000 0000112456789999999
Q ss_pred HHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 044602 420 IISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLV 498 (674)
Q Consensus 420 ~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~ 498 (674)
+|++|++++. |++.+...|+++.+++|+++|++||+++.+ ++++++|.|++|++++++++.+++.++..|+.||++|+
T Consensus 345 ~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~-~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~ 423 (617)
T TIGR00955 345 ALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT-QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423 (617)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 555677889999999999999999999884 57999999999999999888888888999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 044602 499 KERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRA 578 (674)
Q Consensus 499 rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A 578 (674)
||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.++++++|+++++++|+..+|
T Consensus 424 rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a 503 (617)
T TIGR00955 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503 (617)
T ss_pred HhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC-----CCCCC---CCC-----CccccCC-
Q 044602 579 GMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG-----CRNLQ---SSP-----SFDTVNL- 640 (674)
Q Consensus 579 ~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g-----c~~~~---~~~-----~~~~~~~- 640 (674)
+.+++++++++++|+||+++ +||+||+|++|+||++|++|+++.| .| |.... .++ .++.+|+
T Consensus 504 ~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~ 583 (617)
T TIGR00955 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR 583 (617)
T ss_pred HHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCC
Confidence 99999999999999999998 9999999999999999999999999 22 54211 111 2345555
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044602 641 -SGGLQEVWVLLGMALAYRLCAYFCLRKRINKC 672 (674)
Q Consensus 641 -~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 672 (674)
++.|.|+++|+++.++|++++|++||+|.++.
T Consensus 584 ~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 584 NADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46899999999999999999999999998775
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-96 Score=906.16 Aligned_cols=571 Identities=26% Similarity=0.466 Sum_probs=478.7
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.|..+.|+||+|.++.+... ++.+..++.+++|+|||++++|||++||+||||||||||||+|+|+
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~--------------~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~ 929 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEM--------------KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929 (1470)
T ss_pred CcceEEEEEEEEEEccCccc--------------cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC
Confidence 34579999999999753211 0112223446799999999999999999999999999999999998
Q ss_pred CCC-CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 146 LTD-DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 146 ~~~-~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
.++ +.+|+|.+||++.++ .+++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.++.|
T Consensus 930 ~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~ 1009 (1470)
T PLN03140 930 KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD 1009 (1470)
T ss_pred CCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC
Confidence 753 468999999998764 467789999999999999999999999988877666666777788999999999999999
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||+
T Consensus 1010 ~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1010 AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred CccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCE
Confidence 99998777899999999999999999999999999999999999999999999999988999999999999778899999
Q ss_pred EEEEeC-CEEEEecCh----hHHHHHHHhC-CCC-CCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHH
Q 044602 304 LLLISE-GYPVYYGKA----RESMEYFSSL-GFI-PEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQL 376 (674)
Q Consensus 304 v~~L~~-G~iv~~G~~----~~~~~~f~~~-g~~-~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (674)
+++|++ |+++|.|++ +++++||+++ |++ ||++.|||||++|+++...... ....+.+
T Consensus 1090 vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~----------------~~~d~~~ 1153 (1470)
T PLN03140 1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK----------------LGIDFAE 1153 (1470)
T ss_pred EEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccc----------------ccchHHH
Confidence 999996 899999996 5899999997 664 9999999999999976321100 0011233
Q ss_pred HHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhc
Q 044602 377 KYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWW 454 (674)
Q Consensus 377 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~ 454 (674)
.|++. ..+..++........+.. ........++..+||+|+++|++|++++. |++.+...|+++++++|+++|++||
T Consensus 1154 ~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~ 1232 (1470)
T PLN03140 1154 HYKSSSLYQRNKALVKELSTPPPG-ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFW 1232 (1470)
T ss_pred HHhccHHHHHHHHHHHHhccCCCC-ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34321 111111111111100000 00011134688999999999999999985 5566888999999999999999999
Q ss_pred CCCCCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044602 455 KSQSTT--EAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMV 532 (674)
Q Consensus 455 ~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~ 532 (674)
+++++. ..+++++.|++|+++++.++..+.+.++.|..||++|+|||++|+|++++|++|++++|+|+.++.+++|.+
T Consensus 1233 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~ 1312 (1470)
T PLN03140 1233 KVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTL 1312 (1470)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998743 357889999999999998887777778999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhh
Q 044602 533 IVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYL 610 (674)
Q Consensus 533 i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yi 610 (674)
|+|||+||++++..||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++| +||+||+|++|+
T Consensus 1313 i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~i 1392 (1470)
T PLN03140 1313 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWI 1392 (1470)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cHHHHHHHHhhcc--cC----CCCCCC---CC----CccccCC--CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 611 SFLYYGFRLLLKP--RG----CRNLQS---SP----SFDTVNL--SGGLQEVWVLLGMALAYRLCAYFCLRK 667 (674)
Q Consensus 611 Sp~~Ya~eal~~n--~g----c~~~~~---~~----~~~~~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~ 667 (674)
||++|++++++.| .| |...+. .. ..+.+|+ ++.|++++++++++++|++++++++++
T Consensus 1393 sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~ 1464 (1470)
T PLN03140 1393 CPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRT 1464 (1470)
T ss_pred CHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 33 432221 11 1344554 467999999999999999999999986
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-96 Score=904.94 Aligned_cols=595 Identities=23% Similarity=0.384 Sum_probs=477.5
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchh-hhh---hhccc--ccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHH
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSV-VSK---VASQL--SLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLL 139 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~~---~~~~~--~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl 139 (674)
..+.+.|+|++........... ....+. ... ..... .-.+..+++|+|+|+++++||+++|+|||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL 104 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQ-PTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLL 104 (1394)
T ss_pred CeeeEEEECCEEEEEecccccc-CchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 4678999999987732211101 111000 000 00001 1112346799999999999999999999999999999
Q ss_pred HHHHcCCC---CCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC----CCCHHHHHHH-
Q 044602 140 KIVGGRLT---DDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG----NMNRQQKYAR- 208 (674)
Q Consensus 140 ~~L~G~~~---~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~- 208 (674)
|+|+|+.. .+.+|+|.+||+++.+ ..++.++||+|+|.+++.+||+|||.|++.++.+. ..++++..++
T Consensus 105 k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 184 (1394)
T TIGR00956 105 KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHI 184 (1394)
T ss_pred HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 99999863 3469999999998753 35667999999999999999999999998876543 2344444444
Q ss_pred HHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEE
Q 044602 209 VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVI 287 (674)
Q Consensus 209 v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi 287 (674)
++++++.+||.++.|++||++.+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999874 99999
Q ss_pred EEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCc
Q 044602 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASD 367 (674)
Q Consensus 288 ~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (674)
+++|||+++++++||+|++|++|+++++|+++++.+||+++|+.||++.|||||++++++.+.... .+..... .
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~~e~~-----~ 338 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQI-KPGYEKK-----V 338 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhc-ccccccc-----C
Confidence 999999888999999999999999999999999999999999999999999999999987532110 0000000 0
Q ss_pred hHHHHHHHHHHHhhc-ChhhHhhhhccC----C-Cc-h-----hhh---hhhhccCCccCCHHHHHHHHHHHHHHHhh-c
Q 044602 368 SEVLKYLQLKYKTQL-EPKEKEEHHRNK----K-IP-E-----HLQ---LAIQVKKDWTLSWWDQFHIISRRTFRERW-R 431 (674)
Q Consensus 368 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~----~-~~-~-----~~~---~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r-~ 431 (674)
+...+.+.+.|++.. .+...++.+... . .. + ... ......+++..|||+|+++|++|++++.+ +
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 111223344443311 111111111000 0 00 0 000 01112346788999999999999999865 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHH
Q 044602 432 DYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVY 511 (674)
Q Consensus 432 ~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay 511 (674)
+.....|+++.+++|+++|++||+++.+ ++++++|.|++||++++.++.++ ..+..++.||++|+|||.+++|++++|
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~~-~~~~~~r~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay 496 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPKN-TSDFYSRGGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSAD 496 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHH
Confidence 5577899999999999999999999985 46999999999999999888775 557777789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 044602 512 YVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLL 591 (674)
Q Consensus 512 ~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~l 591 (674)
++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++++
T Consensus 497 ~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~l 576 (1394)
T TIGR00956 497 AIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSI 576 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC----CCC---C-----------CCC------CC---------
Q 044602 592 TGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG----CRN---L-----------QSS------PS--------- 634 (674)
Q Consensus 592 f~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g----c~~---~-----------~~~------~~--------- 634 (674)
|+||++| +||+||+|++|+||++|||||++.| .| |.. . +.+ |+
T Consensus 577 f~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~ 656 (1394)
T TIGR00956 577 YTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDY 656 (1394)
T ss_pred HcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHH
Confidence 9999998 9999999999999999999999999 32 741 0 001 11
Q ss_pred cc-ccC--CCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044602 635 FD-TVN--LSGGLQEVWVLLGMALAYRLCAYFCLRKRI 669 (674)
Q Consensus 635 ~~-~~~--~~~~~~~~~il~~~~~~~~~l~~~~L~~~~ 669 (674)
++ .++ .++.|+|+++|++++++|++++++++.+..
T Consensus 657 L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 657 LKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred HHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 223 357899999999999999999999998854
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-95 Score=896.09 Aligned_cols=599 Identities=24% Similarity=0.369 Sum_probs=474.8
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchh-hh---hhhc--ccccc-cccccceeeeEEEEeCCeEEEEEcCCCCcHHH
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSV-VS---KVAS--QLSLD-KDYKHILKGITGSICPGEILALMGPSGSGKTT 137 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~---~~~~--~~~~~-~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKST 137 (674)
.+.+.++|+||++..........-.+..+. .. .... ....+ +..++||+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 345789999999877632211111111111 11 0110 10011 12467999999999999999999999999999
Q ss_pred HHHHHHcCCCCC--CccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------CCCHHHH--
Q 044602 138 LLKIVGGRLTDD--VKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-------NMNRQQK-- 205 (674)
Q Consensus 138 Ll~~L~G~~~~~--~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~-- 205 (674)
|||+|+|++++. .+|+|.+||+++++ ..++.++||+|+|.+++.+||+|||.|+++++.+. +..++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999988542 38999999998864 34678999999999999999999999998765321 1112211
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 206 ----------------------YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 206 ----------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
...++++++.+||++++||.||+..+++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~ 342 (674)
||+.++.++++.|+++++ .|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||+++||.||++.|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 4899999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHHHHH
Q 044602 343 LDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHII 421 (674)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 421 (674)
+++++.+..... .. ...........+.+.++|++. ......++....... ..........++|..++|.|++.|
T Consensus 447 ~~v~s~~~~~~~--~~--~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~s~~~q~~~~ 521 (1470)
T PLN03140 447 QEVTSKKDQEQY--WA--DRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDK-SQSHKAALVFSKYSVPKMELLKAC 521 (1470)
T ss_pred HHhcCchhhhhh--hh--ccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhh-hhcccccccCCCCcCCHHHHHHHH
Confidence 999875211110 00 000000001123455555542 111111111110000 000011112456889999999999
Q ss_pred HHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 044602 422 SRRTFRERWRD-YFDKLRLVQALGVAVVLGLLWWKSQSTT--EAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLV 498 (674)
Q Consensus 422 ~~R~~~~~r~~-~~~~~r~~~~i~~all~G~lf~~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~ 498 (674)
++|++++.+|+ ..+..|+++.+++|+++|++||+++.+. ..+.+.+.|++||++++.++.+ +..+..++.||+||+
T Consensus 522 ~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ 600 (1470)
T PLN03140 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFY 600 (1470)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhH
Confidence 99999986554 5678899999999999999999997531 2356778899999988886655 577899999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 044602 499 KERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRA 578 (674)
Q Consensus 499 rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A 578 (674)
|||..++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|++.+|
T Consensus 601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A 680 (1470)
T PLN03140 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680 (1470)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC-------CCCCCCCC---CccccCCC--C
Q 044602 579 GMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG-------CRNLQSSP---SFDTVNLS--G 642 (674)
Q Consensus 579 ~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g-------c~~~~~~~---~~~~~~~~--~ 642 (674)
+.+++++++++++|+||+++ +||+||+|++|+||++|||||++.| .+ |....... .++.+|+. +
T Consensus 681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~ 760 (1470)
T PLN03140 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDK 760 (1470)
T ss_pred HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccc
Confidence 99999999999999999998 9999999999999999999999999 22 11111111 23445543 3
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044602 643 --GLQEVWVLLGMALAYRLCAYFCLRKRI 669 (674)
Q Consensus 643 --~~~~~~il~~~~~~~~~l~~~~L~~~~ 669 (674)
.|+|+++|++++++|+++++++|++..
T Consensus 761 ~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 761 NWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999998754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-93 Score=883.36 Aligned_cols=544 Identities=26% Similarity=0.408 Sum_probs=456.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.+.+|+|||++++|||++||+||||||||||||+|+|+.++ +.+|+|.+||+++...+++.+|||+|+|.+++.+||+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 36799999999999999999999999999999999998852 4679999999998766788999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS-LLLLDEPTSGL 264 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~-illLDEPTsgL 264 (674)
|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+.. .+|||||||||+||+||+.+|+ ||+||||||||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 999999988876666677777899999999999999999998644 3799999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC-EEEEecCh----hHHHHHHHhCCC-CCCCCCCh
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG-YPVYYGKA----RESMEYFSSLGF-IPEIAMNP 338 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~~~~f~~~g~-~~~~~~np 338 (674)
|+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|.|++ +++++||++.|+ +||++.||
T Consensus 934 D~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~Np 1013 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANP 1013 (1394)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCH
Confidence 9999999999999998889999999999997778899999999987 99999997 578999999996 89999999
Q ss_pred hHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCch--hhhhhhhccCCccCCHH
Q 044602 339 AEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPE--HLQLAIQVKKDWTLSWW 415 (674)
Q Consensus 339 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~ 415 (674)
|||++|+++....+. ..+.+.+.|+.. ......++.+....... .........++++.|||
T Consensus 1014 Ad~~ldvi~~~~~~~----------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 1077 (1394)
T TIGR00956 1014 AEWMLEVIGAAPGAH----------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLW 1077 (1394)
T ss_pred HHHHHHHhhcccccc----------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHH
Confidence 999999987421110 001122233221 11111111110000000 00000111246789999
Q ss_pred HHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 044602 416 DQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEK 494 (674)
Q Consensus 416 ~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er 494 (674)
+|+++|++|++++. |++.+...|+++++++|+++|++||+++++ +.++++|+|++|+++++..+. +...++.|+.||
T Consensus 1078 ~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~-~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r 1155 (1394)
T TIGR00956 1078 YQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS-LQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQR 1155 (1394)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH
Confidence 99999999999985 556678899999999999999999999984 579999999999988876554 456788898988
Q ss_pred hHH-HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHH-------HHHHHHHHHHHHHHHHHHHH
Q 044602 495 IYL-VKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPC-------FFLTLFAILLVAITSQGAGE 566 (674)
Q Consensus 495 ~v~-~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~-------F~~f~~~~~l~~~~~~s~~~ 566 (674)
.+| +|||.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|+++++++.++++++|+
T Consensus 1156 ~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~ 1235 (1394)
T TIGR00956 1156 DLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ 1235 (1394)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 886 9999999999999999999999999999999999999999999988765 99999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC----CCCC---------
Q 044602 567 LFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG----CRNL--------- 629 (674)
Q Consensus 567 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g----c~~~--------- 629 (674)
++++++|+..+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.| .| |...
T Consensus 1236 ~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~ 1315 (1394)
T TIGR00956 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPS 1315 (1394)
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCC
Confidence 99999999999999999999999999999998 9999999999999999999999999 22 5321
Q ss_pred C-------------------------CC---C------Ccccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044602 630 Q-------------------------SS---P------SFDTV--NLSGGLQEVWVLLGMALAYRLCAYFCLRKRINK 671 (674)
Q Consensus 630 ~-------------------------~~---~------~~~~~--~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 671 (674)
+ .+ + .+..+ +.++.|+|+++++++++++ ++++++|+++.|.
T Consensus 1316 ~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1316 GQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred CCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 0 00 0 01222 2467899999999999888 8899999887543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-91 Score=809.52 Aligned_cols=499 Identities=31% Similarity=0.529 Sum_probs=440.1
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCC-hhccccEEEEccCCCCCCCCCH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYN-PALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+++|+|||+.++||.++||||+||||||||||+|+||.. ...+|+|++||.|.+ +.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 45789999999999999999999999999999999999965 567999999999998 5799999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP-SLLLLDEPTSG 263 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P-~illLDEPTsg 263 (674)
+|.|.|+|.+|+|.+++.+++.+.|+++++.++|++++|..||..+ +|||.+||||++||.+|+.|| .||+|||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999988 899999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe-CCEEEEecChhH----HHHHHHhCC-CCCCCCCC
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS-EGYPVYYGKARE----SMEYFSSLG-FIPEIAMN 337 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~~~~f~~~g-~~~~~~~n 337 (674)
||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|+ .|++||.|+..+ +++||+++| ..||...|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 999999999999999999999999999999999999999999998 679999998754 577999987 88999899
Q ss_pred hhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHH
Q 044602 338 PAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWD 416 (674)
Q Consensus 338 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 416 (674)
||||++|+++..... .....+.+.|+++ ..+..++++......+.........+++|++|+|.
T Consensus 1041 PA~~mLevi~~~~~~----------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~ 1104 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEA----------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWY 1104 (1391)
T ss_pred hHHHHHhhccccccc----------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHH
Confidence 999999998742111 0111233444432 22222332222111111111122235678999999
Q ss_pred HHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 044602 417 QFHIISRRTFRE-RWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKI 495 (674)
Q Consensus 417 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~ 495 (674)
|++.+++|++.. ||++.+..+|++..++.|+++|+.||+.+. +..++||++|++|+.+++.+........+.+..||.
T Consensus 1105 Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~-~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~ 1183 (1391)
T KOG0065|consen 1105 QFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH-NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERL 1183 (1391)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC-cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhh
Confidence 999999999998 456678899999999999999999999997 456999999999999887654333234567778999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 044602 496 YLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSI 575 (674)
Q Consensus 496 v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~ 575 (674)
+++||+.+|+|++.+|++|++++|+|+.++++++|.++.|+|+|+..++.+|++|++.+++..++.+.+|+++.+++||.
T Consensus 1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc
Q 044602 576 KRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP 623 (674)
Q Consensus 576 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n 623 (674)
+.|..+.+++..++.+|||+++| .||.||+|++|+||+.|-.++++..
T Consensus 1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~ 1313 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISS 1313 (1391)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHH
Confidence 99999999999999999999998 8999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-86 Score=770.11 Aligned_cols=554 Identities=28% Similarity=0.500 Sum_probs=466.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCEeCChh-ccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNPA-LKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~~~~~~-~~~~igyv~Q~~~l~~~lTV~ 185 (674)
..+|+|+|+-++|||++.++||+||||||||++|+|.+.. ...|+|.+||.+.++. -++.++|+.|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999998752 2368999999998763 267899999999999999999
Q ss_pred HHHHHHHhhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 186 ETLVFAAFLRLPGN----MNRQQKYA-RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 186 e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||.||+...|++||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987732 34444433 57889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChh
Q 044602 261 TSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPA 339 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npa 339 (674)
|+|||+.++.++++.||++++. +.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++||.||++.++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 9999999999999999999984 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHH
Q 044602 340 EFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQF 418 (674)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~ 418 (674)
||+.++++...... +.... ...........+.+.|.+. .+.....+.....+. .+..+.....++|..+.|.|+
T Consensus 368 DfLt~vts~k~~~~--~~~~~--~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~-~k~~~~al~s~~y~v~~~~qv 442 (1391)
T KOG0065|consen 368 DFLTEVTSKKDQEQ--YWNKR--SKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDK-SKKHKAALVSSKYSVPYWEQV 442 (1391)
T ss_pred HHHHHhhcCccccc--ccccc--CCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhh-hhccchhhcCCceeccHHHHH
Confidence 99999998321111 11000 0000011123344444431 222222222211110 011122334678899999999
Q ss_pred HHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 044602 419 HIISRRTFRERWRD-YFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYL 497 (674)
Q Consensus 419 ~~L~~R~~~~~r~~-~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~ 497 (674)
+.|++|.+.+.+++ .++..+.++.+++|+++|++||+.+.++..+.+.|.|++||.+++.++.+ ++.+....+.||||
T Consensus 443 k~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~-laEi~~~~~~~pv~ 521 (1391)
T KOG0065|consen 443 KACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG-LAEIALTFQRLPVF 521 (1391)
T ss_pred HHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-HHHHHHHHhhcchH
Confidence 99999999986555 45678999999999999999999994345689999999999999987765 46787778999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 044602 498 VKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKR 577 (674)
Q Consensus 498 ~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~ 577 (674)
+|||...+|+|+||.++.+++++|+.++.+++|.+|+||++||.+++++||.++++++++++|+.++++++++++++...
T Consensus 522 ~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~ 601 (1391)
T KOG0065|consen 522 YKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSI 601 (1391)
T ss_pred HHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC----CC-----------------CCCCC
Q 044602 578 AGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG----CR-----------------NLQSS 632 (674)
Q Consensus 578 A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g----c~-----------------~~~~~ 632 (674)
|+.++++.++.+.+++||+|| +||+||+|++|+||+.||+|+++.| .| |. ..+..
T Consensus 602 An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 602 ANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGAT 681 (1391)
T ss_pred HhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccc
Confidence 999999999999999999999 9999999999999999999999999 22 65 12222
Q ss_pred CCccc------------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 044602 633 PSFDT------------VNLSGGLQEVWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 633 ~~~~~------------~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 668 (674)
++.+. +...+.|+|++|++|+.++|.++..+++-+.
T Consensus 682 ~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl 729 (1391)
T KOG0065|consen 682 LGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYL 729 (1391)
T ss_pred cCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhc
Confidence 33211 1234679999999999999999999888763
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=419.07 Aligned_cols=217 Identities=29% Similarity=0.499 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. ..++|+|||+++++||+++|+||||||||||||+|+|+. +
T Consensus 2 mi~i~~l~K~fg---------------------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~ 53 (240)
T COG1126 2 MIEIKNLSKSFG---------------------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-E 53 (240)
T ss_pred eEEEEeeeEEeC---------------------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-C
Confidence 478899988763 467999999999999999999999999999999999866 5
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+++|+|.++|+++.. .+|+++|+|||+..|||++||.||+.++...- ...++++.++++.++|+++||.+.+|
T Consensus 54 ~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~ 131 (240)
T COG1126 54 PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKAD 131 (240)
T ss_pred CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 679999999987631 57899999999999999999999999985432 24678888999999999999999988
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.. |.+|||||||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+... +.+.+||
T Consensus 132 ~y-----P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~Vadr 205 (240)
T COG1126 132 AY-----PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADR 205 (240)
T ss_pred hC-----ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhhe
Confidence 75 56999999999999999999999999999999999999999999999999999999999999764 7889999
Q ss_pred EEEEeCCEEEEecChhHH
Q 044602 304 LLLISEGYPVYYGKARES 321 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~ 321 (674)
|++|++|++++.|+++++
T Consensus 206 viFmd~G~iie~g~p~~~ 223 (240)
T COG1126 206 VIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred EEEeeCCEEEEecCHHHH
Confidence 999999999999999876
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-52 Score=460.11 Aligned_cols=276 Identities=28% Similarity=0.440 Sum_probs=228.1
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hcccc-----------ccccccCCCccccC-C----CCceeEE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRYS-----------EIDIVDESSSIEKD-R----PLPIFLK 71 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~~-~----~~~~~l~ 71 (674)
..+.+||+++..|+++.|.++.|+.|... ...++ .+|++|.++..... . .....++
T Consensus 388 siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~Ie 467 (716)
T KOG0058|consen 388 SILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIE 467 (716)
T ss_pred HHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEE
Confidence 56789999999999999999999887531 00111 22566655433221 1 2334799
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
|+||+|+|+.+ .+.+||||+||+|+|||++|||||||+||||+.++|-. ++.|.+
T Consensus 468 F~~VsFaYP~R------------------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r-fY~Pts 522 (716)
T KOG0058|consen 468 FEDVSFAYPTR------------------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR-FYDPTS 522 (716)
T ss_pred EEEeeeecCCC------------------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH-hcCCCC
Confidence 99999999853 23679999999999999999999999999999999995 557789
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
|+|.+||+|+++ .+|++||+|.|||.||.+ ||+|||.|+......+++....+.+.+++.+..+ ++.+||.||
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VG 599 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNF--PDGYNTVVG 599 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccC
Confidence 999999999874 589999999999999998 9999999996521111122233344566677655 999999999
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+++. +||||||||++|||||++||+||||||+||+||++++..|.+.|.++.+ ++|||+|.|+.++ .+.+|+|+++
T Consensus 600 EkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVI 675 (716)
T ss_pred Cccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEE
Confidence 8775 6999999999999999999999999999999999999999999999876 6999999999986 7889999999
Q ss_pred eCCEEEEecChhHHHH
Q 044602 308 SEGYPVYYGKARESME 323 (674)
Q Consensus 308 ~~G~iv~~G~~~~~~~ 323 (674)
++|++++.|+++|+++
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999999974
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=413.34 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++++||++.|... . .+...+|+|||++|++||+++|+|.||||||||+|++.++. .
T Consensus 1 mI~l~~vsK~~~~~-~---------------------~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~ 57 (339)
T COG1135 1 MIELENVSKTFGQT-G---------------------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-R 57 (339)
T ss_pred CeEEEeeeeeeccC-C---------------------CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-C
Confidence 37899999888632 1 12356999999999999999999999999999999999765 5
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
|++|+|.+||+++.. ..|++||++||+..|+...||+||+.|...+. +.++++.++++.++|+.+||++.
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk 134 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDK 134 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhh
Confidence 679999999988752 46889999999999999999999999998765 36789999999999999999988
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.+.. |.+|||||||||+|||||+.+|+||++|||||+|||++...|+++|+++.++ |.||+++||++. .+.++
T Consensus 135 ~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~i 208 (339)
T COG1135 135 ADRY-----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRI 208 (339)
T ss_pred hccC-----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHH
Confidence 8864 5699999999999999999999999999999999999999999999999875 999999999964 68999
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||.+|++|++++.|+..++.
T Consensus 209 c~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 209 CDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred hhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999998873
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-51 Score=401.54 Aligned_cols=218 Identities=28% Similarity=0.522 Sum_probs=198.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++|+|||++|. .+.+++|+|++|++||+++++|||||||||+||+|.++. .
T Consensus 1 MI~~~nvsk~y~---------------------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-e 52 (309)
T COG1125 1 MIEFENVSKRYG---------------------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-E 52 (309)
T ss_pred CceeeeeehhcC---------------------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-C
Confidence 378999998663 367999999999999999999999999999999999777 5
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER--CR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~ 222 (674)
+++|+|++||+++++ ++|++||||-|...|||++||.||+.+--.+. ..++++.+++++++++.+||+. ..
T Consensus 53 pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~ 129 (309)
T COG1125 53 PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYA 129 (309)
T ss_pred CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHh
Confidence 579999999999864 68999999999999999999999999876654 4678888999999999999974 44
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
+ ++|++|||||+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. |.++++
T Consensus 130 ~-----RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLa 203 (309)
T COG1125 130 D-----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLA 203 (309)
T ss_pred h-----cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhh
Confidence 4 467899999999999999999999999999999999999999999999999875 999999999965 689999
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|||.+|++|+++..++|++++.
T Consensus 204 dri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 204 DRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred ceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=390.66 Aligned_cols=220 Identities=32% Similarity=0.490 Sum_probs=198.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+++++|++++ +++.||+|||++|++||+++|+||||||||||||+|.|+++
T Consensus 7 ~~I~vr~v~~~f---------------------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 7 PLIEVRGVTKSF---------------------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred ceEEEeeeeeec---------------------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 458999999865 35779999999999999999999999999999999999885
Q ss_pred CCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 148 DDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
|.+|+|+++|+++.. ++++++|++||+..||..|||+||+.|..+-. ...+++..++.+..-|+.+||..
T Consensus 60 -P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~ 136 (263)
T COG1127 60 -PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRG 136 (263)
T ss_pred -CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCCh
Confidence 469999999998742 47889999999999999999999999976543 35778888889999999999986
Q ss_pred c-ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 221 C-RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 221 ~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
. .+ .+|.+|||||+||+++|||++.||+|+++||||+||||.++..+.++++++.+. |.|+|++|||..+ ++
T Consensus 137 ~~~~-----~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~ 210 (263)
T COG1127 137 AAAD-----LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LL 210 (263)
T ss_pred hhhh-----hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HH
Confidence 5 44 357799999999999999999999999999999999999999999999999876 9999999999764 89
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..|||+++|.+|+++..|+++|+.+
T Consensus 211 ~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 211 TIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999853
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=391.09 Aligned_cols=209 Identities=30% Similarity=0.532 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+..|..+. ....+|+++|++|++||++||+|||||||||||++|+|+..|
T Consensus 2 i~~~~v~k~y~~~~-----------------------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p- 57 (226)
T COG1136 2 IELKNVSKIYGLGG-----------------------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP- 57 (226)
T ss_pred cEEeeeEEEeccCC-----------------------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-
Confidence 56889988775321 125699999999999999999999999999999999998755
Q ss_pred CccEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
++|.|.++|+++.. .+ +++||||||+..|+|.+||.||+.+++.... ....+..++++++++.+||.+.
T Consensus 58 t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~ 134 (226)
T COG1136 58 TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDR 134 (226)
T ss_pred CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhh
Confidence 79999999988752 23 4579999999999999999999998775542 2333566788999999999976
Q ss_pred cc-ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 222 RH-TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 222 ~~-~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
.+ ++ |.+|||||||||+|||||+.+|+|++.||||.+||+.++..|++++++++++ |+|+|++|||+. +..
T Consensus 135 ~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~ 207 (226)
T COG1136 135 LLKKK-----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAK 207 (226)
T ss_pred hccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHH
Confidence 66 43 4699999999999999999999999999999999999999999999999875 999999999974 688
Q ss_pred hcCEEEEEeCCEE
Q 044602 300 MFDKLLLISEGYP 312 (674)
Q Consensus 300 ~~D~v~~L~~G~i 312 (674)
.|||++.|.+|++
T Consensus 208 ~~dr~i~l~dG~~ 220 (226)
T COG1136 208 YADRVIELKDGKI 220 (226)
T ss_pred hCCEEEEEeCCee
Confidence 9999999999994
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=412.58 Aligned_cols=211 Identities=37% Similarity=0.597 Sum_probs=190.7
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV 184 (674)
.+.+|+||||++++||++||+||||||||||+|+|+|+..+ ++|+|.++|.+... ..++++||++|++.+++.+||
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccH
Confidence 36799999999999999999999999999999999998854 69999999998754 578899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+|||.|.+.++... ....+++++++++.+||++..++++ ++||+|||||++||+||+++|++|||||||+||
T Consensus 96 ~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GL 167 (293)
T COG1131 96 RENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167 (293)
T ss_pred HHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCC
Confidence 99999999887432 2455678999999999998656555 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-cEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhC
Q 044602 265 DSTSANKLIQVLQKVAKAG-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~ 328 (674)
|+.++..+.+.|++++++| +||+++||+++ ++..+||+|++|++|++++.|+++++...+...
T Consensus 168 Dp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~ 231 (293)
T COG1131 168 DPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231 (293)
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccC
Confidence 9999999999999999987 89999999976 588889999999999999999999987766543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=401.57 Aligned_cols=220 Identities=30% Similarity=0.459 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++.+||+++|+ .+.+|+|+||++++||+++|+||||||||||||+|+|.++
T Consensus 2 ~L~~~~ls~~y~---------------------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~- 53 (258)
T COG1120 2 MLEVENLSFGYG---------------------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK- 53 (258)
T ss_pred eeEEEEEEEEEC---------------------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-
Confidence 478999999874 3679999999999999999999999999999999999885
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ++.+.+|||||.+...+.+||+|-+.++..-.... ....++.++.+++.|+.+|+.+.++
T Consensus 54 p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~ 133 (258)
T COG1120 54 PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133 (258)
T ss_pred CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc
Confidence 459999999999863 57789999999988888899999999985322111 1123445568999999999999999
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+. +|||||||||.|||||+++|+||+||||||.||...+.++++.++++++ +|+|||+++||++. ..++||
T Consensus 134 r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad 207 (258)
T COG1120 134 RPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYAD 207 (258)
T ss_pred Cccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCC
Confidence 8764 8999999999999999999999999999999999999999999999995 59999999999875 789999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+|+|++
T Consensus 208 ~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 208 HLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred EEEEEECCeEEeecCcchhc
Confidence 99999999999999998875
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=411.98 Aligned_cols=218 Identities=29% Similarity=0.462 Sum_probs=199.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. ..+|+|+|+++++||+++|+||||||||||||+|+|+. .
T Consensus 3 ~i~l~~v~K~yg~---------------------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~ 54 (338)
T COG3839 3 ELELKNVRKSFGS---------------------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-E 54 (338)
T ss_pred EEEEeeeEEEcCC---------------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 5889999987741 12899999999999999999999999999999999987 5
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|.++++ ..+|.||+|||+..|||+|||+||+.|+.+.+ ..++++.+++++++.+.++|++..|++
T Consensus 55 ~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~- 130 (338)
T COG3839 55 PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK- 130 (338)
T ss_pred CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-
Confidence 569999999999875 45789999999999999999999999998775 457888999999999999999999986
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+++|||||||||+|||||+++|++++||||+|+||...+..+...|+++.++ |.|+|.+|||.. |+..++|||.
T Consensus 131 ----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~ 205 (338)
T COG3839 131 ----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIV 205 (338)
T ss_pred ----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEE
Confidence 4599999999999999999999999999999999999999999999998775 899999999964 6889999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++...|+|.|+.+
T Consensus 206 Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 206 VMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEeCCeeeecCChHHHhh
Confidence 999999999999999853
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-49 Score=414.58 Aligned_cols=233 Identities=28% Similarity=0.448 Sum_probs=205.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. ...+++|+|++|++||+++|+||||||||||||+|+|+.
T Consensus 4 ~~l~i~~v~k~yg---------------------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe- 55 (352)
T COG3842 4 PALEIRNVSKSFG---------------------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE- 55 (352)
T ss_pred ceEEEEeeeeecC---------------------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-
Confidence 4589999988763 367999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
.+++|+|.++|+++.. ..+|.||+|||+..|||+|||+||+.|+++.+ ....+++.+++++++++.++|++..+++
T Consensus 56 ~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~ 133 (352)
T COG3842 56 QPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK 133 (352)
T ss_pred CCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC
Confidence 4569999999999974 46889999999999999999999999998743 2345677889999999999999988765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+.+|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||
T Consensus 134 -----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI 207 (352)
T COG3842 134 -----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRI 207 (352)
T ss_pred -----hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccce
Confidence 4699999999999999999999999999999999999999999999998875 999999999965 688999999
Q ss_pred EEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHH
Q 044602 305 LLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLD 344 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~ 344 (674)
.+|++|+|...|+|+|+. ..|...-.|||+-+
T Consensus 208 ~Vm~~G~I~Q~gtP~eiY--------~~P~~~fVA~FiG~ 239 (352)
T COG3842 208 AVMNDGRIEQVGTPEEIY--------ERPATRFVADFIGE 239 (352)
T ss_pred EEccCCceeecCCHHHHh--------hCcchHHHHHHhCc
Confidence 999999999999999983 23444445666543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=385.63 Aligned_cols=224 Identities=28% Similarity=0.478 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+..|+ +.+++|+|||++|++||++||+||||||||||||+|+|+. +
T Consensus 3 ~i~~~nl~k~yp--------------------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d 55 (258)
T COG3638 3 MIEVKNLSKTYP--------------------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-D 55 (258)
T ss_pred eEEEeeeeeecC--------------------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-C
Confidence 589999998885 2367999999999999999999999999999999999976 5
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-----NMNRQQKYARVQMILKEL 216 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~l 216 (674)
+++|+|.+||.++.. .+|+++||++|++.|.+.+||.+|+..+..-+.+. +...++.+.++-+.|+.+
T Consensus 56 ~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv 135 (258)
T COG3638 56 PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135 (258)
T ss_pred CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 679999999987642 46789999999999999999999999875432211 223345567788999999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCch
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSS 295 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~ 295 (674)
|+.+.+.++.+ .|||||+|||+|||||+.+|+|++.|||+++|||.+++++++.|+++++ +|.|||++.||...
T Consensus 136 gi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl 210 (258)
T COG3638 136 GILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL 210 (258)
T ss_pred CcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 99998888765 8999999999999999999999999999999999999999999999987 49999999999764
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
+.++||||+-|++|+++|+|+++|+-+.+
T Consensus 211 -A~~Y~~Riigl~~G~ivfDg~~~el~~~~ 239 (258)
T COG3638 211 -AKKYADRIIGLKAGRIVFDGPASELTDEA 239 (258)
T ss_pred -HHHHHhhheEecCCcEEEeCChhhhhHHH
Confidence 78999999999999999999999875433
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=388.34 Aligned_cols=191 Identities=30% Similarity=0.501 Sum_probs=174.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
..+|+|+|++|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++ ..-...+|||||++.|+|.+||.||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhh
Confidence 569999999999999999999999999999999999884 5699999999998 34567899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...+. .++++..+++++.|+.+||.+..|.. |++|||||||||+|||||+.+|+||+||||+++||..+
T Consensus 94 ~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 94 ALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred eehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 99986642 45677778999999999999888764 67999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+..+.+.|.++.+ .++||+++|||.. |...++|||++|.++
T Consensus 166 R~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 166 REELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999876 4899999999976 578899999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=389.21 Aligned_cols=218 Identities=28% Similarity=0.543 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++.|. + +++|+||||++++|++++|+||||||||||+|+|.|+++
T Consensus 3 ~~i~v~nl~v~y~--------------------------~-~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 3 PMIEVENLTVSYG--------------------------N-RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred cEEEEeeeEEEEC--------------------------C-EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3589999999874 1 259999999999999999999999999999999999885
Q ss_pred CCCccEEEECCEeCChh-ccccEEEEccC---CCCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 148 DDVKGNITYNDIPYNPA-LKRRIGFVTQD---DVLLPQLTVEETLVFAAFLRLP--GNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~-~~~~igyv~Q~---~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|++.... -+.+||||||. |.-|| +||+|-+..+...+.. ...+ ++..+.++++|+.+|+.+.
T Consensus 56 -p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~ 132 (254)
T COG1121 56 -PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDL 132 (254)
T ss_pred -CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhh
Confidence 4699999999987653 24689999995 44566 5999999987443321 1122 3346889999999999999
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
+|+.+| +|||||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+.. +.+.|
T Consensus 133 ~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~ 206 (254)
T COG1121 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYF 206 (254)
T ss_pred hCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhC
Confidence 999987 899999999999999999999999999999999999999999999999999999999999875 78999
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|+.|+ +++++.|+++++.
T Consensus 207 D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 207 DRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred CEEEEEc-CeeEeccChhhcc
Confidence 9999996 6788999999875
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=448.84 Aligned_cols=276 Identities=28% Similarity=0.447 Sum_probs=221.4
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hcccccc-----------ccccCCCcccc------CCCCceeE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRYSEI-----------DIVDESSSIEK------DRPLPIFL 70 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~------~~~~~~~l 70 (674)
-.+.+|+.++.+|.++.|.++++...... .+..+++ ++.+.+.+.+. ....+..+
T Consensus 393 ~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I 472 (709)
T COG2274 393 LILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEI 472 (709)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceE
Confidence 45678999999999999999998654321 0000000 44444333211 12233579
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+|+||+|+|.. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|++ .|.
T Consensus 473 ~~~nvsf~y~~-------------------------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~ 526 (709)
T COG2274 473 EFENVSFRYGP-------------------------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQ 526 (709)
T ss_pred EEEEEEEEeCC-------------------------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99999999862 2246999999999999999999999999999999999987 456
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+|+|++||.|++. .+|++||||+||+.+|.+ |++||+.++......+++-++.....+++.++.+ +..++|.+
T Consensus 527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~v 603 (709)
T COG2274 527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENL--PMGYDTPV 603 (709)
T ss_pred CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--cccccccc
Confidence 9999999999863 689999999999999998 9999999875322111112222333445555554 88999999
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
|+.+. +||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++. .+.||||++
T Consensus 604 ~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiV 679 (709)
T COG2274 604 GEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIV 679 (709)
T ss_pred ccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEE
Confidence 97664 6999999999999999999999999999999999999999999999864 8999999999875 889999999
Q ss_pred EeCCEEEEecChhHHHHH
Q 044602 307 ISEGYPVYYGKARESMEY 324 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~~~ 324 (674)
|++|+++++|+++|+++.
T Consensus 680 l~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 680 LDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCCceeccCCHHHHHHh
Confidence 999999999999999763
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=367.22 Aligned_cols=213 Identities=30% Similarity=0.456 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++|+||+++|+. + +++|+||||++++||++-|+||||||||||||+|.+.. .
T Consensus 1 mI~f~~V~k~Y~~-------------------------g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~ 53 (223)
T COG2884 1 MIRFENVSKAYPG-------------------------G-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-R 53 (223)
T ss_pred CeeehhhhhhcCC-------------------------C-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-c
Confidence 3789999987752 3 67999999999999999999999999999999999876 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+++|+|.+||+++.. .+|++||+|+||..|+++.||+||+.|+.... +.++++.++++.++|+.+||.+.
T Consensus 54 pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k 130 (223)
T COG2884 54 PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHK 130 (223)
T ss_pred CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchh
Confidence 569999999999852 47999999999999999999999999997665 45778889999999999999998
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+.. |.+|||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|+||++.|||.. -+..+-
T Consensus 131 ~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~ 204 (223)
T COG2884 131 ARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMR 204 (223)
T ss_pred hhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhcc
Confidence 8764 5699999999999999999999999999999999999999999999999999999999999954 466677
Q ss_pred CEEEEEeCCEEEEecC
Q 044602 302 DKLLLISEGYPVYYGK 317 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~ 317 (674)
-|++.|++|+++....
T Consensus 205 ~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 205 HRVLALEDGRLVRDES 220 (223)
T ss_pred CcEEEEeCCEEEeccc
Confidence 7999999999987654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=370.42 Aligned_cols=205 Identities=29% Similarity=0.468 Sum_probs=191.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.++++||||+++.||+++|+|||||||||+||+|++++.| ++|+|.+||.+... ..|++||.++.+..++..||++
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 3489999999999999999999999999999999999855 59999999998753 5789999999888899999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|||.|.+++. ++.+.+.+++.+++.+.++|.++.|+++| ++|-|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998876 56778888999999999999999999987 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..+...+.+.+++++++|++||++||... ++..+||+|++|++|++|+.|+.+++.+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999988999999999965 6888999999999999999999988754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=388.33 Aligned_cols=208 Identities=31% Similarity=0.504 Sum_probs=188.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE---eCCh--hccccEEEEccCCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI---PYNP--ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~---~~~~--~~~~~igyv~Q~~~l~~~l 182 (674)
...+++|||++|+.||++|++|||||||||||++|+|+..+ ++|.|.+||+ +.++ .-.|+||||+|+..+|++|
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-CCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence 45689999999999999999999999999999999998854 6999999999 5443 2346899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..++ +|.+|||||||||++||||+.+|++|+||||++
T Consensus 93 tVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 93 TVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 9999999998776 3334677888999999999999987765 567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+||..-+.++.+.|+++.++ |.|++++|||+. ++.++||||++|++|+|...|+++|+.+
T Consensus 167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999876 999999999975 6899999999999999999999999843
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=370.98 Aligned_cols=233 Identities=25% Similarity=0.376 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|. .+.+|+|||+.|++++++|++||||||||||||++.....
T Consensus 6 ~~~~~~~l~~yYg---------------------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 6 PAIEVRDLNLYYG---------------------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred ceeEecceeEEEC---------------------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4578889988763 4679999999999999999999999999999999995432
Q ss_pred ----CCCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 ----DDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ----~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
...+|+|.++|+++.. ++|+++|+|||.|.-|| +|++||+.|+.++.- ...++.++.|+..|+...
T Consensus 59 l~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~Aa 134 (253)
T COG1117 59 LIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAA 134 (253)
T ss_pred cCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhH
Confidence 1357999999999742 58999999999999999 799999999987652 233677788999999988
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+.-..+.. ....+|||||+||+||||||+.+|+|||||||||+|||.+..+|.+++.+|++ .-|||++||.+. +.
T Consensus 135 LWdEVKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QA 211 (253)
T COG1117 135 LWDEVKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QA 211 (253)
T ss_pred hHHHhHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HH
Confidence 8654333332 23457999999999999999999999999999999999999999999999974 799999999975 57
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~ 342 (674)
.+..|+..++..|+++++|+.+++. .-|.+....||+
T Consensus 212 aRvSD~taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 212 ARVSDYTAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred HHHhHhhhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 8999999999999999999999872 345555556665
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=403.06 Aligned_cols=220 Identities=23% Similarity=0.382 Sum_probs=193.6
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.+ .+.+++|+|+||++++||+++|+||||||||||+|+|+|+.+ +
T Consensus 2 I~~~~lsk~y~~~-----------------------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p 57 (343)
T TIGR02314 2 IKLSNITKVFHQG-----------------------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-P 57 (343)
T ss_pred EEEEEEEEEECCC-----------------------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-C
Confidence 7899999988521 112469999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++|+|.++|+++.. ..+++|||++|+..+++.+||+||+.++.... ..++++..+++.++++.+||.+..
T Consensus 58 ~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~ 134 (343)
T TIGR02314 58 TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKH 134 (343)
T ss_pred CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 69999999998752 24678999999999999999999999976532 235566677899999999999887
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
|+.+ .+|||||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++. .+.++|
T Consensus 135 ~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~ 208 (343)
T TIGR02314 135 DSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRIC 208 (343)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7654 589999999999999999999999999999999999999999999999875 999999999975 577899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|++|++|++++.|+++++.
T Consensus 209 d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 209 DCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=398.11 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||+++|+|+++
T Consensus 7 ~i~i~~l~k~~~---------------------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~- 58 (306)
T PRK13537 7 PIDFRNVEKRYG---------------------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH- 58 (306)
T ss_pred eEEEEeEEEEEC---------------------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 589999999773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+++|+|.++|.++.. ..++++|||+|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..+++
T Consensus 59 p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~ 135 (306)
T PRK13537 59 PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAK 135 (306)
T ss_pred CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCc
Confidence 569999999998753 45778999999999999999999999876543 234445556788999999999888887
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++ +||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|+
T Consensus 136 ~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~ 209 (306)
T PRK13537 136 VG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLC 209 (306)
T ss_pred hh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 65 89999999999999999999999999999999999999999999999878999999999975 5789999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 210 il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 210 VIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=403.56 Aligned_cols=218 Identities=28% Similarity=0.453 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ +.+.+|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~i~~l~~~~~--------------------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~- 55 (356)
T PRK11650 3 GLKLQAVRKSYD--------------------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER- 55 (356)
T ss_pred EEEEEeEEEEeC--------------------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-
Confidence 488999998773 12468999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.+||+++.. ..++.+|||+|++.+||++||+||+.|+.+.+ ..++.+..++++++++.+||.+..++.+
T Consensus 56 p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 132 (356)
T PRK11650 56 ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP 132 (356)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh
Confidence 569999999998853 34578999999999999999999999986543 2455666678999999999998877764
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |+|+|++|||+. ++.++||+++
T Consensus 133 -----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~ 206 (356)
T PRK11650 133 -----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVV 206 (356)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999875 999999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 207 vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 207 VMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EEeCCEEEEECCHHHHH
Confidence 99999999999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=401.25 Aligned_cols=218 Identities=30% Similarity=0.483 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~- 55 (353)
T TIGR03265 4 YLSIDNIRKRFG---------------------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER- 55 (353)
T ss_pred EEEEEEEEEEeC---------------------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-
Confidence 488999998773 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.++|+++.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++..++++++++.+||.+..++.+
T Consensus 56 p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~ 132 (353)
T TIGR03265 56 QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP 132 (353)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh
Confidence 569999999998753 34678999999999999999999999987543 2456667788999999999998887754
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++|||+. ++..+||+|+
T Consensus 133 -----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~ 206 (353)
T TIGR03265 133 -----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIV 206 (353)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999775 899999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 207 vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 207 VMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=379.92 Aligned_cols=204 Identities=31% Similarity=0.510 Sum_probs=179.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|+++.. .+++.++||+|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 459999999999999999999999999999999999874 569999999988642 346789999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.++..... ...+++..++++++++.+||.+..++.+ .+|||||||||+|||||+.+|++|+|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 92 LTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred CcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999998753221 1244455667889999999988777665 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999874 899999999976 47789999999999999999998875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=379.03 Aligned_cols=218 Identities=29% Similarity=0.509 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++|+|+. + +.+|+|+|+++++||.++|+|+||||||||+++|+|++.
T Consensus 3 ~i~~~~l~~~y~~-------------------------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~- 55 (235)
T COG1122 3 MIEAENLSFRYPG-------------------------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK- 55 (235)
T ss_pred eEEEEEEEEEcCC-------------------------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-
Confidence 4789999998852 2 579999999999999999999999999999999999985
Q ss_pred CCccEEEECCEeCC-----hhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYN-----PALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~-----~~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|.+.. ..+++++|||+|+| .+|.. ||.|.+.|+.... ..++++.+++++++++.+|+.+.
T Consensus 56 p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~ 131 (235)
T COG1122 56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENL---GLPREEIEERVAEALELVGLEEL 131 (235)
T ss_pred CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC-cHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhh
Confidence 45899999999865 15789999999996 45554 9999999997543 45677888999999999999998
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
+++. +..|||||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.. .+..+
T Consensus 132 ~~r~-----p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ 205 (235)
T COG1122 132 LDRP-----PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEY 205 (235)
T ss_pred ccCC-----ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhh
Confidence 8775 4689999999999999999999999999999999999999999999999987 699999999975 58889
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||++++|++|+++++|+++++.+
T Consensus 206 ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 206 ADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999987754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=399.02 Aligned_cols=217 Identities=23% Similarity=0.446 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+. +
T Consensus 6 ~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~ 57 (351)
T PRK11432 6 FVVLKNITKRFG---------------------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-K 57 (351)
T ss_pred EEEEEeEEEEEC---------------------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-C
Confidence 589999998773 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.+||+++.. ..++.+|||+|++.+||++||+||+.|+.+.+ ..++++..++++++++.+||.+..++.
T Consensus 58 p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~- 133 (351)
T PRK11432 58 PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY- 133 (351)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-
Confidence 569999999998853 34578999999999999999999999987543 245666778899999999998877765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++.+++|+|+
T Consensus 134 ----~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~ 208 (351)
T PRK11432 134 ----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVI 208 (351)
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 4589999999999999999999999999999999999999999999999775 899999999975 5789999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 209 vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 209 VMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=398.55 Aligned_cols=217 Identities=27% Similarity=0.423 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~- 56 (362)
T TIGR03258 5 GIRIDHLRVAYG---------------------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK- 56 (362)
T ss_pred EEEEEEEEEEEC---------------------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 478999998773 2458999999999999999999999999999999999874
Q ss_pred CCc--cEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVK--GNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~--G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+ |+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++
T Consensus 57 p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~ 133 (362)
T TIGR03258 57 AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH 133 (362)
T ss_pred CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC
Confidence 568 999999998753 34678999999999999999999999987543 24556667789999999999988887
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEecCCchHHHhhcC
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA--GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D 302 (674)
.+ ++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..++|
T Consensus 134 ~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~d 207 (362)
T TIGR03258 134 LP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLAD 207 (362)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCC
Confidence 65 589999999999999999999999999999999999999999999999876 799999999975 5789999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++|+++..|+++++.
T Consensus 208 ri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 208 KAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=394.51 Aligned_cols=221 Identities=27% Similarity=0.451 Sum_probs=195.7
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+
T Consensus 38 ~~~~i~i~nl~k~y~---------------------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 38 STVAIDLAGVSKSYG---------------------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CceeEEEEEEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 345699999999773 24599999999999999999999999999999999998
Q ss_pred CCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 146 LTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++ +.+|+|.++|+++.. ..++.+||++|++.+++.+||.||+.+..... .....+..++++++++.++|.+..
T Consensus 91 ~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~ 166 (340)
T PRK13536 91 TS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKA 166 (340)
T ss_pred CC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 84 569999999998753 45778999999999999999999999765443 123444556788999999999888
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.++ +||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||
T Consensus 167 ~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d 240 (340)
T PRK13536 167 DARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCD 240 (340)
T ss_pred CCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCC
Confidence 88765 89999999999999999999999999999999999999999999999878999999999975 5889999
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++++.+
T Consensus 241 ~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 241 RLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999865
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=367.21 Aligned_cols=221 Identities=29% Similarity=0.429 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++.+|+++.|+.+. ...++|+||||++.+||+++|+|+||||||||.++|+|+..
T Consensus 3 ~l~v~nl~~~y~~~~-----------------------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~- 58 (252)
T COG1124 3 LLSVRNLSIVYGGGK-----------------------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK- 58 (252)
T ss_pred eEEEeceEEEecCCc-----------------------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-
Confidence 488999999886321 11369999999999999999999999999999999999875
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|++..+ ..++.+.+||||+ .+-|..||++.|.-+... ...++ .++++.++++.+||++.
T Consensus 59 p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~ 133 (252)
T COG1124 59 PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPS 133 (252)
T ss_pred CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHH
Confidence 469999999987653 4678899999997 588999999999876543 22333 33449999999999864
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.-. +++.+||||||||+||||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|++|||.+ .+..+
T Consensus 134 ~l~----R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~ 208 (252)
T COG1124 134 FLD----RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHM 208 (252)
T ss_pred HHh----cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHH
Confidence 322 357799999999999999999999999999999999999999999999999875 889999999975 58899
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||++|++|++++.++.+++..
T Consensus 209 cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 209 CDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999998854
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=404.37 Aligned_cols=222 Identities=30% Similarity=0.484 Sum_probs=188.4
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++|+||+++|.. +++||+++||+|++||.+||+|+|||||||++|+|.+.+
T Consensus 349 ~~~I~F~dV~f~y~~--------------------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP--------------------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred CCcEEEEeeEEEeCC--------------------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346999999998852 245999999999999999999999999999999999766
Q ss_pred CCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 147 TDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
. .+|+|++||+++++ .+|+.|||||||..||++ ||.+||.|+......+++-+..++...++.+.. +++.+
T Consensus 403 -d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY 477 (591)
T KOG0057|consen 403 -D-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGY 477 (591)
T ss_pred -c-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccc
Confidence 4 69999999999864 689999999999999998 999999998533211111112222223444443 47889
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
+|.||+++. .|||||||||+||||++.||+|+++|||||+||++++.++++.+.+.. .|+|+|++.|+.+ ....||
T Consensus 478 ~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~D 553 (591)
T KOG0057|consen 478 QTLVGERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFD 553 (591)
T ss_pred hhhHhhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCC
Confidence 999998775 599999999999999999999999999999999999999999999843 5999999999976 477899
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++.+.|+++|++.
T Consensus 554 kI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 554 KIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999986
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=395.08 Aligned_cols=220 Identities=26% Similarity=0.441 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+. +
T Consensus 2 ~L~i~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~ 53 (353)
T PRK10851 2 SIEIANIKKSFG---------------------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-H 53 (353)
T ss_pred EEEEEEEEEEeC---------------------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 378899998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...... ...++++..++++++++.++|++..+++
T Consensus 54 p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 133 (353)
T PRK10851 54 QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY 133 (353)
T ss_pred CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence 569999999998753 3457899999999999999999999998653211 1234556677899999999998877765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|
T Consensus 134 ~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri 207 (353)
T PRK10851 134 P-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRV 207 (353)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 589999999999999999999999999999999999999999999999876 899999999975 578999999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|++++.|+++++.
T Consensus 208 ~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 208 VVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999874
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=396.95 Aligned_cols=218 Identities=27% Similarity=0.428 Sum_probs=194.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+
T Consensus 13 ~~L~l~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 13 PLVELRGISKSFD---------------------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred ceEEEEEEEEEEC---------------------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3589999998773 2458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+||++||.||+.|+...+ ..++.+..++++++++.+||.+..++.
T Consensus 66 -p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~ 141 (375)
T PRK09452 66 -PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK 141 (375)
T ss_pred -CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence 569999999998753 34678999999999999999999999986533 234556667889999999999888876
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+|||||||||+|||||+.+|++|||||||+|||..++..+.+.|+++.++ |+|+|++|||+. ++..++|+|
T Consensus 142 p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri 215 (375)
T PRK09452 142 P-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRI 215 (375)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 589999999999999999999999999999999999999999999999875 999999999975 578999999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|+++..|+++++.
T Consensus 216 ~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 216 VVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=370.02 Aligned_cols=208 Identities=30% Similarity=0.467 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|.++ +
T Consensus 2 l~~~~l~~~~~~-------------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~ 55 (216)
T TIGR00960 2 IRFEQVSKAYPG-------------------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-P 55 (216)
T ss_pred eEEEEEEEEecC-------------------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 688999987741 11359999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++...+ ....++..++++++++.+||.+..
T Consensus 56 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 132 (216)
T TIGR00960 56 TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKA 132 (216)
T ss_pred CceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhh
Confidence 69999999998742 24678999999999999999999999875432 123344556789999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 133 ~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d 206 (216)
T TIGR00960 133 HALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRH 206 (216)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCC
Confidence 7665 489999999999999999999999999999999999999999999999877999999999975 4678899
Q ss_pred EEEEEeCCEE
Q 044602 303 KLLLISEGYP 312 (674)
Q Consensus 303 ~v~~L~~G~i 312 (674)
++++|++|++
T Consensus 207 ~i~~l~~G~i 216 (216)
T TIGR00960 207 RTLTLSRGRL 216 (216)
T ss_pred EEEEEeCCcC
Confidence 9999999974
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=386.48 Aligned_cols=218 Identities=28% Similarity=0.438 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++
T Consensus 4 ~i~~~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~- 55 (303)
T TIGR01288 4 AIDLVGVSKSYG---------------------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS- 55 (303)
T ss_pred EEEEEeEEEEeC---------------------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 488999998773 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~ 132 (303)
T TIGR01288 56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR 132 (303)
T ss_pred CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc
Confidence 569999999998742 35678999999999999999999998754432 123444456778899999999888877
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++ +||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+++
T Consensus 133 ~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~ 206 (303)
T TIGR01288 133 VA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLC 206 (303)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 64 89999999999999999999999999999999999999999999999878999999999976 5788999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 207 ~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 207 VLESGRKIAEGRPHALID 224 (303)
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=392.23 Aligned_cols=220 Identities=24% Similarity=0.397 Sum_probs=191.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. .+.+++|+|+||++++||+++|+||||||||||+|+|+|+++ +
T Consensus 2 i~i~~l~~~y~~~-----------------------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p 57 (343)
T PRK11153 2 IELKNISKVFPQG-----------------------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-P 57 (343)
T ss_pred EEEEeEEEEeCCC-----------------------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C
Confidence 7899999988521 112569999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+.++.... ..++++..++++++++.+||.+..
T Consensus 58 ~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~ 134 (343)
T PRK11153 58 TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKA 134 (343)
T ss_pred CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 69999999998752 23678999999999999999999999876443 234455567889999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|
T Consensus 135 ~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~ 208 (343)
T PRK11153 135 DRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRIC 208 (343)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7765 489999999999999999999999999999999999999999999999765 899999999975 577899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 209 d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 209 DRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999998874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=369.36 Aligned_cols=203 Identities=30% Similarity=0.446 Sum_probs=179.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 45999999999999999999999999999999999987 4569999999987642 3566899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+....+ ....++..++++++++.+||++..++++ .+||||||||++||+||+.+|++++|||||+|||
T Consensus 92 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD 163 (220)
T cd03265 92 ENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163 (220)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 9999875432 1234445567899999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 164 PQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999876 899999999976 47788999999999999999988763
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=437.78 Aligned_cols=221 Identities=30% Similarity=0.495 Sum_probs=194.1
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++|+||+|+||.+ .+.+||+|+|+++++|+.+||||||||||||.+.+|- |
T Consensus 984 ~~G~I~~~~V~F~YPsR------------------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-R 1038 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTR------------------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-R 1038 (1228)
T ss_pred ceeEEEEeeeEeeCCCC------------------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-H
Confidence 34579999999999842 2467999999999999999999999999999999999 5
Q ss_pred CCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHHHHc
Q 044602 146 LTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARVQMILKEL 216 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l 216 (674)
.+++++|.|.+||+++++ .+|+++|.|.|+|.||.. |++|||.|+. .+ .+.++ +.+.+++.+.
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~----vs~~eIi~Aak~ANaH~FI~-- 1110 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE----VSEEEIIEAAKLANAHNFIS-- 1110 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC----CCHHHHHHHHHHhhhHHHHh--
Confidence 667779999999999874 689999999999999998 9999999992 11 23332 2333445554
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+|++.+||.||+++. +||||||||++||||+++||+||||||.||+||+++++.+.+.|++.. .|+|.|+++|++++
T Consensus 1111 sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST- 1187 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST- 1187 (1228)
T ss_pred cCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-
Confidence 569999999998775 699999999999999999999999999999999999999999999986 49999999999986
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||.|.|+++|++++.|+|+++++
T Consensus 1188 -IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1188 -IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred -hhcCCEEEEEECCEEEecccHHHHHh
Confidence 78899999999999999999999986
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=348.65 Aligned_cols=200 Identities=25% Similarity=0.451 Sum_probs=179.3
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
=..++++++||++||+||||||||||||+|+|... |.+|+|.+||++... ...|-++++||+..+|.+|||.+|+.+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 36789999999999999999999999999999875 469999999999863 467889999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
+..-.+ .-.++.+++++.++..+||..+.++..+ +|||||||||++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 853221 2235667889999999999999887654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++..++.+++++ +.|++++||+|++ +.+++|+++++++|+|.+.|+.++..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999874 8999999999975 78999999999999999999988764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=368.02 Aligned_cols=198 Identities=35% Similarity=0.553 Sum_probs=173.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 46999999999999999999999999999999999987 4569999999998753 24568999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.++.... .....+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~ 163 (213)
T cd03259 92 NIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDA 163 (213)
T ss_pred HHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875432 1234445567889999999988777765 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 164 KLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999874 899999999975 477899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=387.90 Aligned_cols=207 Identities=25% Similarity=0.412 Sum_probs=184.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV 184 (674)
.+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.. ..++.+||++|++.+++.+||
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 3569999999999999999999999999999999999884 569999999998743 356789999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+||+.+.+..+ .....+..++++++++.+||.+..++.++ +|||||||||+||+||+.+|++|+|||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876543 23344556678999999999988887764 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHH
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 324 (674)
|+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999878999999999975 57889999999999999999999987553
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=425.68 Aligned_cols=272 Identities=29% Similarity=0.440 Sum_probs=212.0
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hc-----------cccccccccCCCcccc----CCCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RN-----------RYSEIDIVDESSSIEK----DRPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ 74 (674)
..+|+..+..|..++|.++.++.+... .. .....++.+.++...+ .......++|+|
T Consensus 254 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~ 333 (567)
T COG1132 254 LALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFEN 333 (567)
T ss_pred HHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEE
Confidence 345667778888888888887765431 00 0001133333221111 112234599999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
|+|+|+. ++++|+|+||+++|||.+||+||||||||||+|+|.|++ ++.+|+|
T Consensus 334 vsf~y~~--------------------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I 386 (567)
T COG1132 334 VSFSYPG--------------------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEI 386 (567)
T ss_pred EEEEcCC--------------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeE
Confidence 9998852 367999999999999999999999999999999999876 5579999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 230 (674)
.+||+++++ .+|++|+||+||+.+|.+ ||+|||.++......+++.++.+...+++.++.+ +++.||.||+++
T Consensus 387 ~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G 463 (567)
T COG1132 387 LIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERG 463 (567)
T ss_pred EECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCCC
Confidence 999999864 689999999999999996 9999999984321111112222222344555554 778999999655
Q ss_pred cCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
..||||||||++||||+++||+||+||||||+||+.++..+.+.++++. +|+|+|+++|++++ .+.||+|++|++|
T Consensus 464 -~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~G 539 (567)
T COG1132 464 -VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDNG 539 (567)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999887 57899999999975 4559999999999
Q ss_pred EEEEecChhHHHH
Q 044602 311 YPVYYGKARESME 323 (674)
Q Consensus 311 ~iv~~G~~~~~~~ 323 (674)
++++.|+|+|+++
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999975
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=381.49 Aligned_cols=237 Identities=26% Similarity=0.396 Sum_probs=197.3
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++ +
T Consensus 2 i~~~~v~~~y~~~~----------------------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p 58 (288)
T PRK13643 2 IKFEKVNYTYQPNS----------------------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-P 58 (288)
T ss_pred EEEEEEEEEeCCCC----------------------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-C
Confidence 78999999885210 011459999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 150 VKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
.+|+|.++|.++.. ..++.+|||+|++ .+++ .||.||+.|+.... ..++.+..+++.++++.+||.
T Consensus 59 ~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~ 134 (288)
T PRK13643 59 TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLA 134 (288)
T ss_pred CCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 69999999998631 3567899999986 5666 59999999876432 234556677889999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
+..++. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.
T Consensus 135 ~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~ 208 (288)
T PRK13643 135 DEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVA 208 (288)
T ss_pred hhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 355554 4589999999999999999999999999999999999999999999999877999999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH---HHHHhCCCCCCCCCChh
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM---EYFSSLGFIPEIAMNPA 339 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~---~~f~~~g~~~~~~~npa 339 (674)
++||+|++|++|++++.|+++++. +.++..|+.+|.....+
T Consensus 209 ~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 209 DYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 899999999999999999999874 34556677666543333
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=394.70 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++
T Consensus 3 ~l~i~~l~~~~~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~- 54 (369)
T PRK11000 3 SVTLRNVTKAYG---------------------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED- 54 (369)
T ss_pred EEEEEEEEEEeC---------------------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-
Confidence 378999998773 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+|+++||+||+.|+...+ ..++++..++++++++.+||.+..++.+
T Consensus 55 p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~ 131 (369)
T PRK11000 55 ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP 131 (369)
T ss_pred CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh
Confidence 569999999998753 23567999999999999999999999986533 2344556678999999999988777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+++
T Consensus 132 -----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~ 205 (369)
T PRK11000 132 -----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIV 205 (369)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999775 899999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 206 vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 206 VLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999874
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=372.25 Aligned_cols=207 Identities=28% Similarity=0.465 Sum_probs=179.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lT 183 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++|.++.. . .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 45899999999999999999999999999999999987 4569999999998753 2 2457999999999999999
Q ss_pred HHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 184 VEETLVFAAFLRLPGN-------MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
|+||+.++........ ....+..++++++++.+||++..++.+ ++||||||||++|||||+.+|++|+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 166 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLL 166 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998754321110 013344567889999999987777655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999999999999999999999877999999999976 477889999999999999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=372.02 Aligned_cols=219 Identities=26% Similarity=0.419 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 53 (239)
T cd03296 2 SIEVRNVSKRFG---------------------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-R 53 (239)
T ss_pred EEEEEeEEEEEC---------------------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 378999998773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 133 (239)
T cd03296 54 PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133 (239)
T ss_pred CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 569999999998753 2356799999999999989999999987543211 0012334456788999999998777765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++
T Consensus 134 ~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i 207 (239)
T cd03296 134 P-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRV 207 (239)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 5 489999999999999999999999999999999999999999999999875 899999999975 477889999
Q ss_pred EEEeCCEEEEecChhHH
Q 044602 305 LLISEGYPVYYGKARES 321 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~ 321 (674)
++|++|++++.|+++++
T Consensus 208 ~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 208 VVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEECCeEEEecCHHHH
Confidence 99999999999998876
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=393.99 Aligned_cols=218 Identities=25% Similarity=0.447 Sum_probs=193.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+
T Consensus 18 ~~l~l~~v~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 18 PLLEIRNLTKSFD---------------------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred ceEEEEeEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3589999998763 2458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+||++||.||+.|+.+.+ ..++.+..++++++++.++|.+..++.
T Consensus 71 -p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~ 146 (377)
T PRK11607 71 -PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK 146 (377)
T ss_pred -CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC
Confidence 569999999998753 35678999999999999999999999986543 235566677899999999998877765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ ++|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++|||+. ++..++|++
T Consensus 147 ~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri 220 (377)
T PRK11607 147 P-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRI 220 (377)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence 4 589999999999999999999999999999999999999999999998764 899999999975 578999999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|+++..|+++++.
T Consensus 221 ~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 221 AIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred EEEeCCEEEEEcCHHHHH
Confidence 999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=434.53 Aligned_cols=226 Identities=30% Similarity=0.454 Sum_probs=191.9
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++|+||+|+|+.+ .+.+||+|+|+.|++||.+||+|||||||||++++|.++
T Consensus 347 ~~g~ief~nV~FsYPsR------------------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf 402 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR------------------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF 402 (1228)
T ss_pred cccceEEEEEEecCCCC------------------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999742 235799999999999999999999999999999999975
Q ss_pred CCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 146 LTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+ .|.+|+|++||.++.+ .+|.+||.|.|+|.+|.. ||+|||.|+.......++.+..+...+++.+.. |++.
T Consensus 403 y-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g 478 (1228)
T KOG0055|consen 403 Y-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDG 478 (1228)
T ss_pred c-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHh
Confidence 5 6679999999999863 688999999999999987 999999998422111111122222334445544 4899
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.||.+|++++. ||||||||++|||||++||+|||||||||+||++++..|++.|++.++ |+|.|+++|++++ .+.+
T Consensus 479 ~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLSt--Irna 554 (1228)
T KOG0055|consen 479 YDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLST--IRNA 554 (1228)
T ss_pred hcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehhh--hhcc
Confidence 99999988774 999999999999999999999999999999999999999999998764 9999999999986 5669
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+|++|++|+||+.|+|+|+++
T Consensus 555 D~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 555 DKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred CEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999975
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=430.72 Aligned_cols=263 Identities=25% Similarity=0.376 Sum_probs=208.0
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hcc----------cccc-ccccCCCccccC----CCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSEI-DIVDESSSIEKD----RPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~~-~~~~~~~~~~~~----~~~~~~l~~~~ 74 (674)
..+|++.+.+|.+++|.++++...... .+. ...+ ++.+.+.+.... ......++|+|
T Consensus 377 l~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~n 456 (686)
T TIGR03797 377 FAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDR 456 (686)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEE
Confidence 456888889999999998887655321 000 0000 222222111111 11124699999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
|+|+|+. +.+++|+|+|++++|||.+||+||||||||||+|+|+|++ ++.+|+|
T Consensus 457 vsf~Y~~-------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I 510 (686)
T TIGR03797 457 VTFRYRP-------------------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSV 510 (686)
T ss_pred EEEEcCC-------------------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 9999852 1256999999999999999999999999999999999987 4569999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCRH 223 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 223 (674)
++||+++++ .+|+++|||+||+.+|++ |++|||.++.. .++ +++.++++..| +++..|
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~d 579 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMH 579 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhcccccc
Confidence 999999863 688999999999999998 99999998632 122 23444444444 356789
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ ++|+|++||+++. .+.||+
T Consensus 580 t~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~ 653 (686)
T TIGR03797 580 TVISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADR 653 (686)
T ss_pred ccccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCE
Confidence 9998765 579999999999999999999999999999999999999999999876 5899999999864 677999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++|+++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=369.41 Aligned_cols=204 Identities=26% Similarity=0.516 Sum_probs=179.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lT 183 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. . .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 459999999999999999999999999999999999874 569999999998642 2 3457999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+||+.+....+ .....+..++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++|+|||||+|
T Consensus 92 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 163 (232)
T cd03218 92 VEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAG 163 (232)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 999999865432 1233445567889999999988777655 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 164 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 164 VDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999877999999999976 578899999999999999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=378.12 Aligned_cols=221 Identities=24% Similarity=0.444 Sum_probs=187.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+.+|+||||++++||++||+||||||||||+++|+|+++ +
T Consensus 3 l~~~~l~~~y~~~~----------------------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-p 59 (287)
T PRK13637 3 IKIENLTHIYMEGT----------------------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-P 59 (287)
T ss_pred EEEEEEEEECCCCC----------------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C
Confidence 78999999885210 012469999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh------hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--c
Q 044602 150 VKGNITYNDIPYNP------ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--R 220 (674)
Q Consensus 150 ~~G~I~~~g~~~~~------~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~ 220 (674)
.+|+|.++|.++.. ..++.+|||+|++. .+...||+||+.|+.... ..++++..++++++++.+||. +
T Consensus 60 ~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~ 136 (287)
T PRK13637 60 TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYED 136 (287)
T ss_pred CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchh
Confidence 69999999998742 35678999999963 233469999999875432 245566667889999999997 5
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++. ++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+
T Consensus 137 ~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~ 210 (287)
T PRK13637 137 YKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAK 210 (287)
T ss_pred hccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 55654 4589999999999999999999999999999999999999999999999875 899999999975 4678
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||++|++|++++.|+++++.
T Consensus 211 ~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 211 LADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=366.52 Aligned_cols=202 Identities=33% Similarity=0.549 Sum_probs=178.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 46999999999999999999999999999999999987 4569999999998743 4567899999999999899999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+..... .....+..++++++++.++|.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||
T Consensus 94 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 165 (220)
T cd03263 94 EHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165 (220)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 9999875433 1233444567889999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 166 ~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 166 PASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999976 699999999986 46788999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=364.02 Aligned_cols=198 Identities=33% Similarity=0.596 Sum_probs=175.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++....++.++|++|++.+++.+||+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 45899999999999999999999999999999999987 45699999999987655667899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+....+ .....+..++++++++.+|+++..++.+ ++||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~ 163 (210)
T cd03269 92 VYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 (210)
T ss_pred HHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 9875433 1234445567899999999987777654 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|
T Consensus 164 ~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 164 VELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999877899999999975 467889999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=369.06 Aligned_cols=203 Identities=27% Similarity=0.437 Sum_probs=179.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~l 182 (674)
++|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 69999999999999999999999999999999999874 569999999998742 2357899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+.||+.+....+ .....+..+.++++++.+||++..++.+ ++||||||||++|||||+.+|++++|||||+
T Consensus 98 t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (233)
T cd03258 98 TVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATS 169 (233)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 9999999875432 1234445567889999999988777654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 170 ALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999875 899999999975 577899999999999999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=365.31 Aligned_cols=200 Identities=31% Similarity=0.490 Sum_probs=175.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. .++.++||+|++.+++.+||+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l 94 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNV 94 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcc-ccCcEEEEecccccccCCCHHHHH
Confidence 469999999999999999999999999999999999874 569999999998753 467899999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...+ ....++..++++++++.+||.+..++.+ ++||||||||++|||||+.+|++++|||||+|||+.+
T Consensus 95 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 166 (220)
T cd03293 95 ALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166 (220)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHH
Confidence 9875432 1233444567889999999987777665 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe--CCEEEEecChh
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS--EGYPVYYGKAR 319 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 319 (674)
+..+.+.|+++.+ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 167 ~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 167 REQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999865 4899999999975 4678999999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=365.25 Aligned_cols=214 Identities=29% Similarity=0.519 Sum_probs=184.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|+. ++
T Consensus 2 l~~~~v~~~~~~~-----------------------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~ 57 (218)
T cd03266 2 ITADALTKRFRDV-----------------------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EP 57 (218)
T ss_pred eEEEEEEEecCCC-----------------------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CC
Confidence 6889999977421 01126999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 150 VKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
.+|+|.++|+++.. .+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+
T Consensus 58 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (218)
T cd03266 58 DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV 134 (218)
T ss_pred CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh
Confidence 69999999998753 45678999999999999999999998865432 2334455678899999999988777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+++|++++
T Consensus 135 -----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~ 208 (218)
T cd03266 135 -----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVV 208 (218)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999999877999999999975 57789999999
Q ss_pred EeCCEEEEec
Q 044602 307 ISEGYPVYYG 316 (674)
Q Consensus 307 L~~G~iv~~G 316 (674)
|++|++++.|
T Consensus 209 l~~G~i~~~~ 218 (218)
T cd03266 209 LHRGRVVYEG 218 (218)
T ss_pred EECCEEeecC
Confidence 9999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=422.17 Aligned_cols=216 Identities=27% Similarity=0.404 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.+
T Consensus 348 ~~i~~~~vsf~~~--------------------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 348 VTIEAEDLEILSP--------------------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred ceEEEEeeEEecc--------------------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 3699999998553 1256999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA-----RVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL 218 (674)
| .+|+|.+||+++++ .+|++|+||+|++.+|++ |++|||.++.. +.++++..+ .+++.++. |
T Consensus 401 p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~--l 471 (588)
T PRK11174 401 P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPL--L 471 (588)
T ss_pred C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHh--c
Confidence 5 59999999999863 578999999999999998 99999998731 223332221 22333333 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+++ ..||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++. +++|+|++||+++. .
T Consensus 472 p~G~dT~vge~G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i 547 (588)
T PRK11174 472 PQGLDTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--L 547 (588)
T ss_pred ccccccccccCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--H
Confidence 778899999775 4699999999999999999999999999999999999999999999986 48999999999864 6
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+.||+|++|++|++++.|+++|+++
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHh
Confidence 7799999999999999999999863
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=389.77 Aligned_cols=205 Identities=25% Similarity=0.420 Sum_probs=184.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hc----cccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----AL----KRRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~----~~~igyv~Q~~~l~ 179 (674)
.+.+|+|+||++++||+++|+|||||||||||++|+|+. ++++|+|.++|+++.. .+ ++.+|||+|++.+|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 466999999999999999999999999999999999987 4569999999998753 23 67899999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
|++||+||+.|+.... ..++++..+++.++++.+||++..++.+ .+|||||||||+|||||+.+|+||||||
T Consensus 84 ~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999986543 2455666788999999999988777654 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++||+.++..+.+.++++.++ |+|||++|||+. ++.++||+|++|++|+++..|+++++.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999764 899999999975 578999999999999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=381.08 Aligned_cols=216 Identities=26% Similarity=0.451 Sum_probs=191.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +
T Consensus 3 l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~ 54 (301)
T TIGR03522 3 IRVSSLTKLYG---------------------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-P 54 (301)
T ss_pred EEEEEEEEEEC---------------------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 78899998773 2459999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 150 VKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
++|+|.++|+++.. ..++.+||++|++.+++.+||.||+.+.+..+ ....++..++++++++.+||.+..++.+
T Consensus 55 ~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 131 (301)
T TIGR03522 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI 131 (301)
T ss_pred CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch
Confidence 69999999998753 45678999999999999999999999876543 2334455667899999999998888775
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++|||+++
T Consensus 132 ~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~ 204 (301)
T TIGR03522 132 G-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVII 204 (301)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEE
Confidence 4 8999999999999999999999999999999999999999999999965 799999999975 58899999999
Q ss_pred EeCCEEEEecChhHHHH
Q 044602 307 ISEGYPVYYGKARESME 323 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~~ 323 (674)
|++|++++.|+++++.+
T Consensus 205 l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 205 INKGKIVADKKLDELSA 221 (301)
T ss_pred EECCEEEEeCCHHHHHH
Confidence 99999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=381.32 Aligned_cols=233 Identities=23% Similarity=0.412 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+... ...+++|+|+|+++++||++||+|+||||||||+++|+|+++
T Consensus 20 ~~l~~~nl~~~y~~~~----------------------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ----------------------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred ceEEEEeEEEEeCCCC----------------------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3599999999985210 012469999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh--------------------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Q 044602 148 DDVKGNITYNDIPYNP--------------------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQK 205 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--------------------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~ 205 (674)
+.+|+|.++|+++.. .+++.+|||+|++ .+++. ||+||+.|+.... ..+.++.
T Consensus 78 -p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~ 152 (320)
T PRK13631 78 -SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEA 152 (320)
T ss_pred -CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHH
Confidence 569999999987531 3567899999986 57765 9999999875322 2345555
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 044602 206 YARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284 (674)
Q Consensus 206 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~ 284 (674)
.++++++++.+||+ +..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+
T Consensus 153 ~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~ 227 (320)
T PRK13631 153 KKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK 227 (320)
T ss_pred HHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 67889999999996 455554 458999999999999999999999999999999999999999999999987799
Q ss_pred EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH---HHHHhCCCCCC
Q 044602 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM---EYFSSLGFIPE 333 (674)
Q Consensus 285 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~---~~f~~~g~~~~ 333 (674)
|||++||+++ .+.+.||++++|++|++++.|+++++. +.++..|+.+|
T Consensus 228 TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 228 TVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999975 467899999999999999999999874 23444555543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=378.06 Aligned_cols=231 Identities=25% Similarity=0.428 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+++|+|||+++++||+++|+||||||||||+++|+|+.+ +
T Consensus 3 l~~~~l~~~y~~~~----------------------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p 59 (290)
T PRK13634 3 ITFQKVEHRYQYKT----------------------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-P 59 (290)
T ss_pred EEEEEEEEEECCCC----------------------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C
Confidence 78999999885211 012469999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 150 VKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
.+|+|.++|+++.. ..++.+|||+|++ .+++ .||.||+.|+.... ..+.++..++++++++.+||.
T Consensus 60 ~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 135 (290)
T PRK13634 60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLP 135 (290)
T ss_pred CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCC
Confidence 69999999998731 3466899999986 4564 69999999875432 234555567889999999997
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++
T Consensus 136 ~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~ 209 (290)
T PRK13634 136 EELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DA 209 (290)
T ss_pred hhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 5566654 589999999999999999999999999999999999999999999999765 999999999975 57
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH---HHHHhCCCCCC
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM---EYFSSLGFIPE 333 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~---~~f~~~g~~~~ 333 (674)
.++||||++|++|++++.|+++++. +.+...+..+|
T Consensus 210 ~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 210 ARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 8899999999999999999998874 23444455443
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=363.03 Aligned_cols=198 Identities=29% Similarity=0.483 Sum_probs=174.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 458999999999999999999999999999999999874 569999999998753 23457999999999998899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.++.... ....++..++++++++.+||.+..++.+ ++||||||||++|||+|+.+|++++|||||+|||+
T Consensus 92 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~ 163 (213)
T cd03301 92 NIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163 (213)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875432 2234455667889999999988777765 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999874 899999999975 577889999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=429.31 Aligned_cols=266 Identities=24% Similarity=0.398 Sum_probs=212.0
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcccc--C----CCCcee
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIEK--D----RPLPIF 69 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--~----~~~~~~ 69 (674)
+..+|++.+.+|..+.|.++++..+... .++.. ++.+.+++... . ......
T Consensus 386 il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~--~il~~~~e~~~~~~~~~~~~~~~~ 463 (694)
T TIGR03375 386 IVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLD--ELMQLPVERPEGTRFLHRPRLQGE 463 (694)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCCCCCCCCccce
Confidence 4567889999999999999888765421 00100 22222211110 0 112236
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++|+||+|+|+. +.+++|+|+|++++|||.+||+||||||||||+|+|+|++ ++
T Consensus 464 I~~~~vsf~Y~~-------------------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p 517 (694)
T TIGR03375 464 IEFRNVSFAYPG-------------------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QP 517 (694)
T ss_pred EEEEEEEEEeCC-------------------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 999999999852 1256999999999999999999999999999999999987 55
Q ss_pred CccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------C
Q 044602 150 VKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------L 218 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 218 (674)
.+|+|.+||+++++ .+|+.++||+|++.+|++ |++|||.++.. +.+++ ++.++++..+ +
T Consensus 518 ~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~l 587 (694)
T TIGR03375 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRH 587 (694)
T ss_pred CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhC
Confidence 69999999999863 578999999999999998 99999998631 12332 2333333333 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ ..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++. .
T Consensus 588 p~gl~T~i~e~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~ 663 (694)
T TIGR03375 588 PDGLDMQIGERG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--L 663 (694)
T ss_pred cccccceecCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--H
Confidence 678899999765 46999999999999999999999999999999999999999999999864 8999999999864 6
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESMEY 324 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~~ 324 (674)
+.||+|++|++|++++.|+++|+++.
T Consensus 664 ~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 664 DLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 78999999999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=369.45 Aligned_cols=207 Identities=30% Similarity=0.511 Sum_probs=177.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 45999999999999999999999999999999999987 4569999999998642 246689999999999998
Q ss_pred CCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 182 LTVEETLVFAAFLRL-----PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 182 lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+||+||+.++..... .......+..++++++++.++|.+..++.+ .+||||||||++|||||+.+|++|+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lll 167 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLIL 167 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999987642110 001112334567889999999987766654 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 168 ADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999764 899999999976 477799999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=373.17 Aligned_cols=217 Identities=26% Similarity=0.410 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++
T Consensus 4 ~l~~~~l~~~~~~--------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 56 (274)
T PRK13647 4 IIEVEDLHFRYKD--------------------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL- 56 (274)
T ss_pred eEEEEEEEEEeCC--------------------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-
Confidence 4889999997741 1458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+|||+|++. .++..||.||+.|+.... ...+.+..++++++++.+||.+..+
T Consensus 57 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 133 (274)
T PRK13647 57 PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRD 133 (274)
T ss_pred CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhc
Confidence 569999999998753 34678999999963 344579999999875322 2344455567899999999987777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 134 ~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 134 KPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 665 489999999999999999999999999999999999999999999999877999999999975 46789999
Q ss_pred EEEEeCCEEEEecChhHH
Q 044602 304 LLLISEGYPVYYGKARES 321 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~ 321 (674)
+++|++|++++.|+++++
T Consensus 208 i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 208 VIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEECCEEEEECCHHHh
Confidence 999999999999998754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=369.19 Aligned_cols=218 Identities=28% Similarity=0.486 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.+ +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 54 (250)
T PRK11264 3 AIEVKNLVKKFH---------------------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-Q 54 (250)
T ss_pred cEEEeceEEEEC---------------------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 478999998773 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 149 DVKGNITYNDIPYNP------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
+.+|+|.++|+++.. ..++.++||+|++.+++.+||.||+.++..... .....+..++++++++.+
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~ 132 (250)
T PRK11264 55 PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKV 132 (250)
T ss_pred CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHc
Confidence 569999999987641 245689999999999998999999988643111 123444556788999999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
||.+..++.+ ++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. +
T Consensus 133 gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~ 206 (250)
T PRK11264 133 GLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-F 206 (250)
T ss_pred CCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H
Confidence 9987766654 489999999999999999999999999999999999999999999999877999999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||++++|++|++++.|+++++.
T Consensus 207 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 207 ARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 77899999999999999999988763
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=374.72 Aligned_cols=228 Identities=24% Similarity=0.413 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+++
T Consensus 4 ~l~~~~l~~~~~~~------------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 58 (279)
T PRK13650 4 IIEVKNLTFKYKED------------------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE- 58 (279)
T ss_pred eEEEEeEEEEcCCC------------------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 48999999987421 12458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|.++.. ..++.+|||+|++ .+++..||+||+.|+.... ..++++..++++++++.+||.+..+
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 135 (279)
T PRK13650 59 AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKE 135 (279)
T ss_pred CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhh
Confidence 569999999998752 4567899999997 4677789999999875432 2455566678899999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||
T Consensus 136 ~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~d 208 (279)
T PRK13650 136 REP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSD 208 (279)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCC
Confidence 664 489999999999999999999999999999999999999999999999875 9999999999764 5 5799
Q ss_pred EEEEEeCCEEEEecChhHHHH---HHHhCCCC
Q 044602 303 KLLLISEGYPVYYGKARESME---YFSSLGFI 331 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~ 331 (674)
++++|++|+++..|+++++.+ .++..|+.
T Consensus 209 ri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 209 RVLVMKNGQVESTSTPRELFSRGNDLLQLGLD 240 (279)
T ss_pred EEEEEECCEEEEECCHHHHHcChHHHHHcCCC
Confidence 999999999999999988642 23444544
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=418.35 Aligned_cols=267 Identities=23% Similarity=0.310 Sum_probs=207.7
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh------------------hcccccc-ccccCCCcc--cc--CCCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL------------------RNRYSEI-DIVDESSSI--EK--DRPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~--~~--~~~~~~~l~~~~ 74 (674)
..+|++.+.+|.+++|.++.+...... ......+ ++.+.+++. .. ....+..++++|
T Consensus 267 ~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 346 (582)
T PRK11176 267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRN 346 (582)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEE
Confidence 456777888999999988766544220 0000000 222211110 00 111223699999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
|+|+|+. +.+++|+|+|+++++||.+||+||||||||||+|+|+|++ ++.+|+|
T Consensus 347 vsf~y~~-------------------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I 400 (582)
T PRK11176 347 VTFTYPG-------------------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEI 400 (582)
T ss_pred EEEecCC-------------------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceE
Confidence 9998852 2256999999999999999999999999999999999987 4569999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCRH 223 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 223 (674)
.+||+++++ .+++.++||+||+.+|++ |++|||.++. +...+++ +++++++..| |++..|
T Consensus 401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gld 471 (582)
T PRK11176 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLD 471 (582)
T ss_pred EECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccC
Confidence 999999763 578899999999999997 9999998862 1112332 3344444433 467889
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+.+ +.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+
T Consensus 472 t~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~ 547 (582)
T PRK11176 472 TVIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADE 547 (582)
T ss_pred ceeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 9999765 5799999999999999999999999999999999999999999999985 4799999999985 4678999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++++++
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998863
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=367.91 Aligned_cols=204 Identities=29% Similarity=0.533 Sum_probs=178.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 45899999999999999999999999999999999987 4569999999998642 346689999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER--CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+||+.+..... ....++..++++++++.+||.+ ..++.+ ++||||||||++|||||+.+|++|+|||||+
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~ 164 (242)
T cd03295 93 EENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPFG 164 (242)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999875432 2234455567899999999985 555543 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 165 ~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 165 ALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999875 899999999975 477899999999999999999988763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=366.66 Aligned_cols=205 Identities=27% Similarity=0.485 Sum_probs=179.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 45999999999999999999999999999999999987 4569999999998742 3466899999999999989
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||+||+.++.... ......+..++++++++.+||++..++.+ +.||||||||++|||||+.+|++++|||||+
T Consensus 93 tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~ 165 (240)
T PRK09493 93 TALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTS 165 (240)
T ss_pred cHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998864211 12234455567889999999987777654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++|+|+|++||++. ++.++||++++|++|++++.|+++++.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999877999999999976 467889999999999999999988763
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=391.69 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||||+|+|+++
T Consensus 3 ~L~~~nls~~y~---------------------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~- 54 (402)
T PRK09536 3 MIDVSDLSVEFG---------------------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT- 54 (402)
T ss_pred eEEEeeEEEEEC---------------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-
Confidence 488999998773 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. .+++++|||+|++.+++.+||+||+.++....... ....++..++++++++.+||.+..+
T Consensus 55 p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~ 134 (402)
T PRK09536 55 PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD 134 (402)
T ss_pred CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc
Confidence 569999999998753 46778999999999988899999999864321100 0012344567899999999998888
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ ++||||||||++|||||+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||
T Consensus 135 ~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 135 RPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 765 489999999999999999999999999999999999999999999999877999999999976 57899999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 044602 304 LLLISEGYPVYYGKARESM 322 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~ 322 (674)
+++|++|++++.|++++++
T Consensus 209 ii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 209 LVLLADGRVRAAGPPADVL 227 (402)
T ss_pred EEEEECCEEEEecCHHHHh
Confidence 9999999999999999853
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=376.97 Aligned_cols=221 Identities=22% Similarity=0.423 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+... .....+|+|+|+++++||++||+||||||||||+++|+|.++
T Consensus 2 ~i~~~~l~~~y~~~~----------------------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~- 58 (305)
T PRK13651 2 QIKVKNIVKIFNKKL----------------------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL- 58 (305)
T ss_pred EEEEEEEEEEECCCC----------------------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-
Confidence 378999999885311 012459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC----------------------------hhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCC
Q 044602 149 DVKGNITYNDIPYN----------------------------PALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 149 ~~~G~I~~~g~~~~----------------------------~~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
+.+|+|.++|.+.. ...++.+|||+|++ .++ ..||+||+.|+....
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~--- 134 (305)
T PRK13651 59 PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM--- 134 (305)
T ss_pred CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---
Confidence 46899999987541 13467899999985 445 469999999875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~ 277 (674)
..++++..++++++++.+||. +..++.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+
T Consensus 135 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~ 209 (305)
T PRK13651 135 GVSKEEAKKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209 (305)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 245566677899999999996 5666654 5899999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+++++|+|||++||++. .+.+.||||++|++|++++.|+++++.
T Consensus 210 ~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 210 NLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99877999999999975 477899999999999999999999874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=366.01 Aligned_cols=204 Identities=28% Similarity=0.436 Sum_probs=174.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----CCCccEEEECCEeCCh------hccccEEEEccCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNP------ALKRRIGFVTQDDVL 178 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~----~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l 178 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ ++.+|+|.++|+++.. ..++.++|++|++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 469999999999999999999999999999999999872 3469999999998642 346689999999988
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+ .+||+||+.++..... .....+..++++++++.+||.+..++.+. +.+||||||||++|||||+.+|++|+||
T Consensus 93 ~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 93 F-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred c-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8 7899999998754321 11222345678899999999876665430 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
|||+|||+.++..+.+.|++++++ +|||++||++. .+.++||++++|++|++++.|++++
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 167 EPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999876 99999999975 4778999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=363.86 Aligned_cols=202 Identities=30% Similarity=0.530 Sum_probs=175.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++.. . .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 458999999999999999999999999999999999874 569999999988742 1 3567999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
++||+.+...... ..+..++++++++.+ ++.+..++.+ ++||||||||++|||||+.+|++|+|||||+
T Consensus 92 ~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~ 161 (222)
T cd03224 92 VEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161 (222)
T ss_pred HHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 9999998754321 123345667788888 5776666654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 162 GLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999877899999999975 478899999999999999999987753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=375.37 Aligned_cols=212 Identities=25% Similarity=0.413 Sum_probs=183.4
Q ss_pred ccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h----ccccEEEE
Q 044602 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A----LKRRIGFV 172 (674)
Q Consensus 101 ~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~----~~~~igyv 172 (674)
++...++.+.+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.++.. . .++.++|+
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v 107 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence 44444566789999999999999999999999999999999999874 569999999998742 1 13579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
+|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ ++||||||||++|||||+.+|
T Consensus 108 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 108 FQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred ecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875432 1233445567889999999988777765 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999764 899999999975 477899999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=428.27 Aligned_cols=263 Identities=24% Similarity=0.384 Sum_probs=208.1
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc--c-------C---
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE--K-------D--- 63 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~--~-------~--- 63 (674)
...+|++++.+|.+++|.++++...... .++.. ++.+.+++.. . .
T Consensus 394 il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~--~il~~~~e~~~~~~~~~~~~~~~~ 471 (710)
T TIGR03796 394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLD--DVLRNPVDPLLEEEEAPAAGSEPS 471 (710)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCccccccccccccccccC
Confidence 4566888899999999999887655431 00100 2222111110 0 0
Q ss_pred CCCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 64 RPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 64 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
......++++||+|+|+. ..+++|+|+|+++++||.+||+||||||||||+|+|+
T Consensus 472 ~~~~~~I~~~~vsf~y~~-------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 472 PRLSGYVELRNITFGYSP-------------------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred CCCCCeEEEEEEEEecCC-------------------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 111236899999998852 1256999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC--
Q 044602 144 GRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-- 217 (674)
Q Consensus 144 G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-- 217 (674)
|++ ++.+|+|.+||.++++ .+|+++|||+|++.+|++ |++|||.++.. ..+++ ++.++++..|
T Consensus 527 gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~~----~i~~al~~~~l~ 595 (710)
T TIGR03796 527 GLY-QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPDA----DLVRACKDAAIH 595 (710)
T ss_pred cCC-CCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCHH----HHHHHHHHhCCH
Confidence 987 4569999999999853 588999999999999987 99999987521 12322 2334444433
Q ss_pred -----CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 218 -----LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 218 -----L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
+++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.|++ .++|+|++||+
T Consensus 596 ~~i~~lp~gl~t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHr 671 (710)
T TIGR03796 596 DVITSRPGGYDAELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHR 671 (710)
T ss_pred HHHHhCcCcccceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecC
Confidence 4667899998765 57999999999999999999999999999999999999999999976 48999999999
Q ss_pred CchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 293 PSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 293 ~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
++. .+.||+|++|++|++++.|+++|+++
T Consensus 672 l~~--i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 672 LST--IRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHH--HHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 864 57799999999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=371.57 Aligned_cols=218 Identities=23% Similarity=0.449 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|..+
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 58 (269)
T PRK11831 7 LVDMRGVSFTRG---------------------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA- 58 (269)
T ss_pred eEEEeCeEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999998763 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.+...... .....+..+++.++++.+||.+.
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~ 136 (269)
T PRK11831 59 PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGA 136 (269)
T ss_pred CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhh
Confidence 569999999998742 235679999999999999999999988643211 12344445678889999999887
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++
T Consensus 137 ~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~ 210 (269)
T PRK11831 137 AKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSI 210 (269)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHh
Confidence 77765 489999999999999999999999999999999999999999999999765 899999999975 47889
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 211 ~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 211 ADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred hCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988763
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=389.78 Aligned_cols=272 Identities=28% Similarity=0.399 Sum_probs=218.3
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh-------------------hccccccccccCCCcccc-C-----CCCceeEEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL-------------------RNRYSEIDIVDESSSIEK-D-----RPLPIFLKF 72 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~ 72 (674)
+-..+|.+..+..++|..+-+..+... -++.+.+|+.+++++..+ + ......++|
T Consensus 461 sll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~f 540 (790)
T KOG0056|consen 461 SLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEF 540 (790)
T ss_pred hheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEE
Confidence 445678889999999987777655421 112223355555443221 1 123357999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+||+|.|.. ++++|+||||++.||+.+|++||||+||||++++|-... +..+|
T Consensus 541 snvtF~Y~p--------------------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sG 593 (790)
T KOG0056|consen 541 SNVTFAYDP--------------------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSG 593 (790)
T ss_pred EEeEEecCC--------------------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCc
Confidence 999998852 378999999999999999999999999999999999544 66799
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
.|.+||++++. .+|+.||.||||..+|++ |+..||.|+..-...+++..+.+.+.+++- .++.++.++|+||+
T Consensus 594 sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGE 670 (790)
T KOG0056|consen 594 SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGE 670 (790)
T ss_pred eEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhh
Confidence 99999999864 689999999999999998 999999997432221112222222233332 26779999999999
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
++.+ |||||||||+|||+++++|.|++|||+||+||..+++.|...|.++++ ++|.|++.|+.++ .-.+|.|++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEe
Confidence 8876 999999999999999999999999999999999999999999999986 8999999999987 45689999999
Q ss_pred CCEEEEecChhHHHH
Q 044602 309 EGYPVYYGKARESME 323 (674)
Q Consensus 309 ~G~iv~~G~~~~~~~ 323 (674)
+|+|++.|.|+|++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=362.24 Aligned_cols=219 Identities=45% Similarity=0.755 Sum_probs=185.4
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD- 148 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~- 148 (674)
+.|+||+++++.. +..+++|+|+|+++++||+++|+||||||||||+|+|+|.+++
T Consensus 4 ~~~~~~~~~~~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~ 60 (226)
T cd03234 4 LPWWDVGLKAKNW-----------------------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG 60 (226)
T ss_pred ceeecceeeeecC-----------------------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCC
Confidence 6799999988521 1136799999999999999999999999999999999998752
Q ss_pred -CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccc
Q 044602 149 -DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM-ILKELGLERCRHTR 225 (674)
Q Consensus 149 -~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.....+....+....+++++ .++.+++.+..++.
T Consensus 61 ~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (226)
T cd03234 61 GTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140 (226)
T ss_pred CCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc
Confidence 569999999998754 467789999999999999999999998765432222222233344555 89999988766665
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||+++
T Consensus 141 ~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 141 V-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred c-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence 4 58999999999999999999999999999999999999999999999987799999999998556889999999
Q ss_pred EEeCCEEEEec
Q 044602 306 LISEGYPVYYG 316 (674)
Q Consensus 306 ~L~~G~iv~~G 316 (674)
+|++|++++.|
T Consensus 216 ~l~~G~i~~~g 226 (226)
T cd03234 216 LLSSGEIVYSG 226 (226)
T ss_pred EEeCCEEEecC
Confidence 99999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=368.55 Aligned_cols=206 Identities=30% Similarity=0.472 Sum_probs=176.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.++.. .+++.++|++|++.+++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 45999999999999999999999999999999999987 4569999999998642 246789999999999999
Q ss_pred CCHHHHHHHHHhhcC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 182 LTVEETLVFAAFLRL--P---GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 182 lTV~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+||+||+.++..... . ......+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 168 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLIL 168 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999987532100 0 00112334567889999999987777654 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.++||++++|++|++++.|+++++
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999764 899999999976 46789999999999999999998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=362.52 Aligned_cols=216 Identities=27% Similarity=0.477 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. ...+++|+|+||++++||+++|+||||||||||+|+|+|++ +
T Consensus 5 ~l~~~~l~~~~~~~-----------------------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 60 (233)
T PRK11629 5 LLQCDNLCKRYQEG-----------------------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-T 60 (233)
T ss_pred eEEEEeEEEEcCCC-----------------------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 48999999987421 01146999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.++|+++.. .. ++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||++
T Consensus 61 ~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~ 137 (233)
T PRK11629 61 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEH 137 (233)
T ss_pred CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCch
Confidence 569999999998742 12 257999999999999999999999875432 1234445567899999999987
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~ 299 (674)
..++.+ .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +..
T Consensus 138 ~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~ 211 (233)
T PRK11629 138 RANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR 211 (233)
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh
Confidence 777654 48999999999999999999999999999999999999999999999976 58999999999864 444
Q ss_pred hcCEEEEEeCCEEEEecCh
Q 044602 300 MFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~ 318 (674)
+|++++|++|++++.|+.
T Consensus 212 -~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 212 -MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred -hCEEEEEECCEEEEEecc
Confidence 689999999999988864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=398.13 Aligned_cols=217 Identities=31% Similarity=0.486 Sum_probs=188.3
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..++.++.+|++|+|+. .+++++|+|+++++|+.+||+|+||||||||+++|+|
T Consensus 316 ~~~~ei~~~~l~~~y~~--------------------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 316 EPPIEISLENLSFRYPD--------------------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred CCCceeeecceEEecCC--------------------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34667778899998863 2478999999999999999999999999999999999
Q ss_pred CCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC--
Q 044602 145 RLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-- 218 (674)
Q Consensus 145 ~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-- 218 (674)
+.+ +++|+|.+||++..+ .++++++||+|+|.+|++ |++|||.++.. +.++ +.+.+++++.||
T Consensus 370 ~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~----e~i~~al~~a~l~~ 438 (559)
T COG4988 370 FLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASD----EEIIAALDQAGLLE 438 (559)
T ss_pred cCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCH----HHHHHHHHHhcHHH
Confidence 884 479999999998753 689999999999999999 99999998732 1233 344555555554
Q ss_pred ----CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ----ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ----~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
++..|+.+|+.+ ++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|+|++||++.
T Consensus 439 ~v~~p~GLdt~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 439 FVPKPDGLDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred hhcCCCcccchhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 457789998655 57999999999999999999999999999999999999999999999987 699999999986
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. ..-+|+|++|++|++++.|+++++.
T Consensus 517 ~--~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 517 D--AADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred H--HhcCCEEEEecCCceeccCCHHHHh
Confidence 5 6679999999999999999999984
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=426.72 Aligned_cols=266 Identities=26% Similarity=0.438 Sum_probs=206.8
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh--------hccc----------c-ccccccCCCccc-cC--C--CCceeEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRY----------S-EIDIVDESSSIE-KD--R--PLPIFLKF 72 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------~-~~~~~~~~~~~~-~~--~--~~~~~l~~ 72 (674)
++.+|++.+.+|.++.|.++.+..+... .+.. . ..++.+.+++.. .. . .....++|
T Consensus 402 il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~ 481 (711)
T TIGR00958 402 VLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEF 481 (711)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEE
Confidence 4567888899999999999887665321 0000 0 012222221111 00 1 12235999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+||+|+|+.. .++++|+|+|++++|||.+||+||||||||||+|+|+|.+ ++.+|
T Consensus 482 ~nVsf~Y~~~------------------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G 536 (711)
T TIGR00958 482 QDVSFSYPNR------------------------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGG 536 (711)
T ss_pred EEEEEECCCC------------------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCC
Confidence 9999998621 1256999999999999999999999999999999999977 55699
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcc
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERC 221 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~ 221 (674)
+|.+||+++++ .++++++||+|++.+|++ |++|||.++.. ..++ +++.++++..+ +++.
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~G 606 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTPD----EEIMAAAKAANAHDFIMEFPNG 606 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCCCc
Confidence 99999999863 578899999999999997 99999998732 1222 23444455444 3567
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.||.+|+.+ ..||||||||++|||||+++|+||+||||||+||++++..+.+ .. ..+++|+|++||+++. .+.+
T Consensus 607 ldT~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~a 680 (711)
T TIGR00958 607 YDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERA 680 (711)
T ss_pred cCCcccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhC
Confidence 899998764 5799999999999999999999999999999999999999998 22 2358999999999864 6779
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+|++|++|++++.|+++|+++
T Consensus 681 D~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 681 DQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred CEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=361.61 Aligned_cols=193 Identities=33% Similarity=0.567 Sum_probs=168.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------h-ccccEEEEccCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------A-LKRRIGFVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~-~~~~igyv~Q~~~l~~ 180 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 46999999999999999999999999999999999987 4569999999998742 1 2467999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.+||+||+.++...+ .....+..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++||||||
T Consensus 96 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 96 DLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred CCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 999999999876433 1233344567889999999987777654 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 261 TSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999987 58999999999864 54 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=371.70 Aligned_cols=221 Identities=29% Similarity=0.490 Sum_probs=189.2
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|.+
T Consensus 3 ~~~l~~~~l~~~~~~--------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 3 DYILKVEELNYNYSD--------------------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred CceEEEEeEEEEeCC--------------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346899999998741 245999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCC------hhccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 147 TDDVKGNITYNDIPYN------PALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
++.+|+|.++|.++. ..+++.+||++|++. .+...||+||+.++.... ..+..+..++++++++.+||.
T Consensus 57 -~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 132 (283)
T PRK13636 57 -KPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIE 132 (283)
T ss_pred -CCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCCh
Confidence 456999999999873 135678999999973 233469999999865322 234555567789999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. +.
T Consensus 133 ~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~ 206 (283)
T PRK13636 133 HLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VP 206 (283)
T ss_pred hhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HH
Confidence 8777664 589999999999999999999999999999999999999999999999875 8999999999764 67
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
++||++++|++|++++.|+++++.+
T Consensus 207 ~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 207 LYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 7899999999999999999988753
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=358.64 Aligned_cols=194 Identities=33% Similarity=0.547 Sum_probs=171.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 469999999999999999999999999999999999874 569999999988753 34668999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.+..... .. ..++++++++.++|.+..++.+ .+|||||||||+|||+|+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 92 NLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred HHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 998875432 11 1346788999999988777665 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|++++.|
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 160 DGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999877999999999975 467889999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=379.24 Aligned_cols=233 Identities=24% Similarity=0.402 Sum_probs=192.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|....... + .....+...+|+||||+|++||+++|+|+||||||||+++|+|+++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~-----------~---~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQ-----------W---FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred ceEEEeCeEEEECCCCccc-----------c---ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4599999999885321100 0 0000122569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. .+++.++||+|++ .++|.+||.||+.+...... ...++++..++++++++.+||
T Consensus 73 -p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl 150 (331)
T PRK15079 73 -ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGL 150 (331)
T ss_pred -CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCC
Confidence 569999999998742 2467899999997 58889999999998754321 123556667788999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSR 296 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~ 296 (674)
. +..++ ++++|||||||||+|||||+.+|++||+||||+|||..++.++++.|+++.++ |.|+|++|||+. .
T Consensus 151 ~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~ 224 (331)
T PRK15079 151 LPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-V 224 (331)
T ss_pred ChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H
Confidence 5 34454 45699999999999999999999999999999999999999999999999875 999999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||+|++|++|++++.|+++++.
T Consensus 225 ~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 225 VKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 77899999999999999999998874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=359.00 Aligned_cols=193 Identities=36% Similarity=0.545 Sum_probs=169.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|+++.. .+++.++|++|++.+++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 459999999999999999999999999999999999874 569999999998742 245689999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||.||+.++.... .....+..++++++++.++|.+..++.+ .+||||||||++|||||+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt 165 (214)
T TIGR02673 94 RTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPT 165 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 99999999875432 1233445567899999999987766654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 166 GNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999877999999999975 5778899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=373.09 Aligned_cols=221 Identities=25% Similarity=0.445 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+... ...+.+|+|||++|++||+++|+||||||||||+|+|+|.. +
T Consensus 2 ~l~~~~l~~~y~~~~----------------------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~ 58 (286)
T PRK13646 2 TIRFDNVSYTYQKGT----------------------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-K 58 (286)
T ss_pred EEEEEEEEEEECCCC----------------------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 378999999885210 01246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. .+++.+|||+|++ .+++. ||.||+.|+.... ..+.++..++++++++.+||
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 134 (286)
T PRK13646 59 PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED-TVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGF 134 (286)
T ss_pred CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh-hHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 569999999998732 3567899999986 46664 9999999875432 23455566788999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSR 296 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~ 296 (674)
. +..++. ++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. +
T Consensus 135 ~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~ 208 (286)
T PRK13646 135 SRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-E 208 (286)
T ss_pred ChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H
Confidence 6 556654 458999999999999999999999999999999999999999999999976 4899999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||++++|++|++++.|+++++.
T Consensus 209 ~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 209 VARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 77899999999999999999998864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=361.56 Aligned_cols=203 Identities=30% Similarity=0.495 Sum_probs=176.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 45999999999999999999999999999999999987 4569999999998742 2345799999999888889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+....+ .....+..+.++++++.+||.+..++.++ +||||||||++|||||+.+|++++|||||+|||
T Consensus 93 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD 164 (236)
T TIGR03864 93 QNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164 (236)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 9998865432 12344455678899999999887777654 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++..+.+.|+++++ +|+|+|++||++.. +. .||++++|++|++++.|+++++.
T Consensus 165 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 165 PASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999985 58999999999864 44 59999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=425.54 Aligned_cols=264 Identities=24% Similarity=0.345 Sum_probs=208.8
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc-c-----CCCCcee
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE-K-----DRPLPIF 69 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-~-----~~~~~~~ 69 (674)
.+.+|++++.+|.++.|.++++...... .++.. ++.+.+++.. . .......
T Consensus 396 il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~--~~l~~~~e~~~~~~~~~~~~~~~~ 473 (708)
T TIGR01193 396 ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLN--EVYLVDSEFINKKKRTELNNLNGD 473 (708)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCcccccccccCCCCCCCc
Confidence 4567899999999999999888765431 00100 2222111110 0 0112236
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+|+|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|++ ++
T Consensus 474 I~~~~vsf~y~~--------------------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p 526 (708)
T TIGR01193 474 IVINDVSYSYGY--------------------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QA 526 (708)
T ss_pred EEEEEEEEEcCC--------------------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CC
Confidence 999999998841 246999999999999999999999999999999999977 45
Q ss_pred CccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------C
Q 044602 150 VKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------L 218 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 218 (674)
.+|+|++||+++++ .+|+++|||+|++.+|++ |++|||.++.. + +.+++ ++.++++..+ +
T Consensus 527 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~l 597 (708)
T TIGR01193 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENM 597 (708)
T ss_pred CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhc
Confidence 69999999998753 688999999999999998 99999998631 1 12222 2333333332 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++ +|+|+|+++|+++. .
T Consensus 598 p~gldt~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~ 672 (708)
T TIGR01193 598 PLGYQTELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--A 672 (708)
T ss_pred ccccCcEecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--H
Confidence 677899998755 579999999999999999999999999999999999999999999985 48999999999864 6
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+.||+|++|++|++++.|+++|+++
T Consensus 673 ~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 673 KQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 7899999999999999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=358.32 Aligned_cols=194 Identities=33% Similarity=0.489 Sum_probs=170.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 46999999999999999999999999999999999987 4569999999998642 246689999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.+....+ ....++..++++++++.+||++..++.+ .+||||||||++|||||+.+|++++|||||
T Consensus 93 ~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 93 RNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 99999999875432 1234445567889999999988777654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
+|||+.++..+.+.|++++++|+|+|++||++. .+.++||++++|++|++
T Consensus 165 ~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999777999999999975 46778999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=416.72 Aligned_cols=223 Identities=25% Similarity=0.392 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+
T Consensus 927 ~~L~I~nLsK~y~~-------------------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~ 981 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-------------------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP 981 (2272)
T ss_pred ceEEEEeEEEEecC-------------------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC
Confidence 46788888887731 23569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 148 DDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+++|+|.++|+++.. ..|+.+||++|++.+++.+||+||+.|.++.+ ....++.+++++++++.+||++..++
T Consensus 982 -PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~ 1057 (2272)
T TIGR01257 982 -PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE 1057 (2272)
T ss_pred -CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 569999999998853 45778999999999999999999999987654 23344556788999999999988887
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.++ +|||||||||+||+||+.+|++|+|||||+|||+.+++.+++.|++++ +|+|||++||++. ++..+||||
T Consensus 1058 ~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI 1130 (2272)
T TIGR01257 1058 EAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRI 1130 (2272)
T ss_pred Chh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEE
Confidence 654 899999999999999999999999999999999999999999999995 5999999999975 578899999
Q ss_pred EEEeCCEEEEecChhHHHHHHH
Q 044602 305 LLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
++|++|+++..|+++++.+.|.
T Consensus 1131 ~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1131 AIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred EEEECCEEEEecCHHHHHHhcC
Confidence 9999999999999999987663
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=363.96 Aligned_cols=215 Identities=28% Similarity=0.463 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|..++
T Consensus 2 l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p- 53 (247)
T TIGR00972 2 IEIENLNLFYG---------------------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL- 53 (247)
T ss_pred EEEEEEEEEEC---------------------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-
Confidence 67899998763 13589999999999999999999999999999999998743
Q ss_pred C-----ccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 150 V-----KGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 150 ~-----~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
. +|+|.++|+++.. ..++.++|++|++.+++ +||.||+.+....+ ......+..++++++++.+||
T Consensus 54 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 130 (247)
T TIGR00972 54 VPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAAL 130 (247)
T ss_pred CcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 4 8999999998742 34678999999999998 89999999875432 112344555678999999999
Q ss_pred C----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 E----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
. +..++. +++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++.
T Consensus 131 ~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 204 (247)
T TIGR00972 131 WDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ 204 (247)
T ss_pred CcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH
Confidence 7 555554 458999999999999999999999999999999999999999999999977 599999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 205 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 205 -QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=363.87 Aligned_cols=218 Identities=25% Similarity=0.482 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~ 54 (241)
T PRK10895 3 TLTAKNLAKAYK---------------------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-P 54 (241)
T ss_pred eEEEeCcEEEeC---------------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478899988763 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++.+||.||+.+..... .....++...+++++++.+|+.+..+
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 132 (241)
T PRK10895 55 RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRD 132 (241)
T ss_pred CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhh
Confidence 569999999998742 24568999999999999899999998764322 11233445567889999999987666
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ ++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||+
T Consensus 133 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 133 SMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred cch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 654 489999999999999999999999999999999999999999999999877999999999975 57889999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 044602 304 LLLISEGYPVYYGKARESM 322 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~ 322 (674)
+++|++|++++.|+++++.
T Consensus 207 v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 207 AYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEeCCeEEeeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=363.04 Aligned_cols=215 Identities=25% Similarity=0.456 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 56 (237)
T PRK11614 5 MLSFDKVSAHYG---------------------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-R 56 (237)
T ss_pred EEEEEeEEEeeC---------------------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-C
Confidence 589999998763 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-GLERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~ 222 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++.... ...+..+.++++++.+ ++.+..
T Consensus 57 p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~ 131 (237)
T PRK11614 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERR 131 (237)
T ss_pred CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHH
Confidence 569999999998742 24568999999999999899999998864221 1222344567778877 476555
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||
T Consensus 132 ~~~~-----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d 205 (237)
T PRK11614 132 IQRA-----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLAD 205 (237)
T ss_pred hCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCC
Confidence 5543 589999999999999999999999999999999999999999999999877999999999975 5789999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 206 ~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 206 RGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999998774
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=365.14 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|..+
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~- 56 (257)
T PRK10619 5 KLNVIDLHKRYG---------------------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK- 56 (257)
T ss_pred cEEEeeeEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 388999998774 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP-----------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~ 211 (674)
+.+|+|.++|.++.. .+++.++|++|++.+++.+||+||+.++..... ...+.+..+++.+
T Consensus 57 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~ 134 (257)
T PRK10619 57 PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVK 134 (257)
T ss_pred CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 569999999987631 346689999999999999999999987542111 1234455677889
Q ss_pred HHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 212 ILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 212 ~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
+++.+|+.+.. ++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|
T Consensus 135 ~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs 209 (257)
T PRK10619 135 YLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 209 (257)
T ss_pred HHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99999997653 444 358999999999999999999999999999999999999999999999987799999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++. ++..+|||+++|++|++++.|+++++.
T Consensus 210 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 210 HEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred CCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 9975 477789999999999999999988763
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=368.81 Aligned_cols=218 Identities=25% Similarity=0.439 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++
T Consensus 5 ~l~~~~l~~~~~~-------------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~- 58 (279)
T PRK13635 5 IIRVEHISFRYPD-------------------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL- 58 (279)
T ss_pred eEEEEEEEEEeCC-------------------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-
Confidence 4899999998741 12459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+||++|++ .+++..||.||+.++.... ....++..++++++++.+||.+..+
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 135 (279)
T PRK13635 59 PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLN 135 (279)
T ss_pred CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhh
Confidence 569999999998753 3567899999997 3666679999999875432 2344555677899999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||
T Consensus 136 ~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d 208 (279)
T PRK13635 136 REP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QAD 208 (279)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCC
Confidence 765 489999999999999999999999999999999999999999999999876 8999999999864 44 599
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 209 ~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 209 RVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998875
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=349.67 Aligned_cols=209 Identities=24% Similarity=0.493 Sum_probs=187.5
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~ 181 (674)
+.+++++|||+++++||+++++|||||||||.+.++.|+.. +++|+|.+||.+++. ..|..+||+||++..|..
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~ 93 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence 34679999999999999999999999999999999999885 469999999999863 456689999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
|||+|||......+.. ...+.+.+.+++++|++++|.|.++++- .+||||||+|+.|||||+.+|+.++||||+
T Consensus 94 LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPF 167 (243)
T COG1137 94 LTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPF 167 (243)
T ss_pred CcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999999987765532 2233455667889999999999998864 389999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|.||.+..+|.++++.|+++|..|++|-|+.. +...+|||.+++++|++..+|+++|+.+
T Consensus 168 AGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 168 AGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999987 5789999999999999999999999853
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=371.12 Aligned_cols=221 Identities=27% Similarity=0.406 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|.++
T Consensus 2 ~i~~~~l~~~~~~~~----------------------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~- 58 (287)
T PRK13641 2 SIKFENVDYIYSPGT----------------------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK- 58 (287)
T ss_pred EEEEEEEEEEcCCCC----------------------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 478999999874210 012469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. ..++.+||++|++ .++ .+||.||+.++.... ....++..++++++++.+||
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL 134 (287)
T PRK13641 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGL 134 (287)
T ss_pred CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 569999999998631 3456899999996 355 479999999875432 23445556678999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
. +..++.+ ++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+
T Consensus 135 ~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~ 208 (287)
T PRK13641 135 SEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DV 208 (287)
T ss_pred ChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH
Confidence 7 5666655 489999999999999999999999999999999999999999999999877999999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 209 ~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 209 AEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8899999999999999999998764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=361.50 Aligned_cols=216 Identities=26% Similarity=0.427 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 53 (242)
T PRK11124 2 SIQLNGINCFYG---------------------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-M 53 (242)
T ss_pred EEEEEeeEEEEC---------------------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478999998773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCC----------hhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 149 DVKGNITYNDIPYN----------PALKRRIGFVTQDDVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 149 ~~~G~I~~~g~~~~----------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+.+|+|.++|.++. ...++.++|++|++.+++.+||.||+.+.. ... .....+..++++++++.+|
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~g 130 (242)
T PRK11124 54 PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLR 130 (242)
T ss_pred CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 56999999999762 134668999999999999999999997532 221 1233444567899999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|++..++.+ ++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++
T Consensus 131 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~ 204 (242)
T PRK11124 131 LKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VA 204 (242)
T ss_pred ChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH
Confidence 987777654 489999999999999999999999999999999999999999999999877999999999976 46
Q ss_pred HhhcCEEEEEeCCEEEEecChhHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.++||++++|++|++++.|++++.
T Consensus 205 ~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 205 RKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHh
Confidence 788999999999999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=412.10 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++|+|+. ++++|+|+|+++++||.+||+|+||||||||+|+|+|++
T Consensus 339 ~~i~~~~v~f~y~~--------------------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~- 391 (592)
T PRK10790 339 GRIDIDNVSFAYRD--------------------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY- 391 (592)
T ss_pred CeEEEEEEEEEeCC--------------------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-
Confidence 35999999998851 145999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
+|.+|+|.+||+++++ .++++|+||+|++.+|++ |++|||.++. ..++ ++++++++.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~ 460 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELAR 460 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHH
Confidence 4569999999999863 578999999999999998 9999999863 1122 34555556555
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|++..||.+|+.+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++.
T Consensus 461 ~lp~Gldt~i~e~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~- 537 (592)
T PRK10790 461 SLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST- 537 (592)
T ss_pred hccccccccccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH-
Confidence 4567899998754 56999999999999999999999999999999999999999999999865 7999999999854
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||+|++|++|++++.|+++|++
T Consensus 538 -l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 538 -IVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred -HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6779999999999999999999985
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=356.39 Aligned_cols=196 Identities=31% Similarity=0.560 Sum_probs=171.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+||++++| +++|+||||||||||+++|+|+++ +.+|+|.++|.++.. ..++.++|++|++.+++.+||.
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 45999999999999 999999999999999999999874 569999999987643 3567899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+....+ ...+.+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 162 (211)
T cd03264 91 EFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162 (211)
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999865433 1233344567889999999987777665 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 163 PEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999976 699999999975 467889999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=364.13 Aligned_cols=216 Identities=22% Similarity=0.379 Sum_probs=184.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+
T Consensus 11 ~~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 11 PQIKVENLNLWYG---------------------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eeEEEeeeEEEeC---------------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3589999998763 2458999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.+..... ..+.++..++++++++.++
T Consensus 64 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~ 139 (258)
T PRK14268 64 LIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAA 139 (258)
T ss_pred cccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 3 369999999988631 34678999999998888 79999999875432 1234444567888999998
Q ss_pred CC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+. +..++. +..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++
T Consensus 140 l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 140 LWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred CCcchhhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 84 334444 458999999999999999999999999999999999999999999999965 89999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
. ++.++||++++|++|++++.|+++++
T Consensus 214 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 214 Q-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5 46788999999999999999999876
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=354.69 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=187.3
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~ 181 (674)
+.-.+++||||++++||+++|+||||||||||+|+|+|.++ |++|+|.++|+++.. ..|..++--||...+|++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 44679999999999999999999999999999999999885 569999999999863 346678999999999999
Q ss_pred CCHHHHHHHHHhhcC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 182 LTVEETLVFAAFLRL--------PG-NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 182 lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|++.| +||+|||||+.|||||+.+|
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~P 168 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQP 168 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcCC
Confidence 999999998865331 11 12356667889999999999999999876 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++|+||||.+||.+....++.+.|++++++ |.||++|-||.. .+..+||||+||+.|+++.+|+|+|+.
T Consensus 169 ~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 169 KLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred CEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999984 799999999975 589999999999999999999999985
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=375.42 Aligned_cols=227 Identities=26% Similarity=0.433 Sum_probs=191.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|+++
T Consensus 11 ~~L~i~~l~~~~~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 11 ALLDVKDLRVTFSTP-----------------------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred ceEEEeCeEEEEecC-----------------------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 358999999988531 122469999999999999999999999999999999999885
Q ss_pred CC--CccEEEECCEeCCh----h---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 148 DD--VKGNITYNDIPYNP----A---LK-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 148 ~~--~~G~I~~~g~~~~~----~---~~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
+. .+|+|.++|+++.. . +| +.|+||+|++ .+.|.+|+.+++........ ...+++..+++.++++.
T Consensus 68 p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~ 145 (330)
T PRK09473 68 ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDA 145 (330)
T ss_pred CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 43 48999999998742 2 23 4799999997 68899999999987654321 23455666788999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
+||++..+. + +.++++|||||||||+|||||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+.
T Consensus 146 vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 146 VKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred cCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 999764322 2 3467899999999999999999999999999999999999999999999999875 899999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++||+|++|++|++++.|+++++.
T Consensus 224 -~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 224 -VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999999875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=366.30 Aligned_cols=216 Identities=24% Similarity=0.432 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.+ ++
T Consensus 2 l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p 53 (271)
T PRK13638 2 LATSDLWFRYQ---------------------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RP 53 (271)
T ss_pred eEEEEEEEEcC---------------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC
Confidence 68899998763 245999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCC------hhccccEEEEccCCCC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYN------PALKRRIGFVTQDDVL-LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++. ...++.++||+|++.+ +...|+.||+.+..... ....++..++++++++.+||.+..
T Consensus 54 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 130 (271)
T PRK13638 54 QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFR 130 (271)
T ss_pred CccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHh
Confidence 6999999999873 1345689999999752 34458999998864332 223444556788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ ..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 131 ~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d 204 (271)
T PRK13638 131 HQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISD 204 (271)
T ss_pred cCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCC
Confidence 7654 489999999999999999999999999999999999999999999999877999999999975 4678899
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 205 ~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 205 AVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=355.21 Aligned_cols=191 Identities=31% Similarity=0.512 Sum_probs=166.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-hccccEEEEccCCC-CCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKRRIGFVTQDDV-LLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~-l~~~lTV~e 186 (674)
+.+|+|+||++++||+++|+|||||||||||++|+|.. ++.+|+|.++|.++.. ..++.++|++|++. .+..+||+|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 46999999999999999999999999999999999987 4569999999998753 45668999999974 334569999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.++.... . ...++++++++.+||.+..++.+ ++||||||||++|||||+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 92 ELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred HHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 998865322 1 11256789999999988777765 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 313 (674)
.++..+.+.|++++++|+|+|++||++. ++.++||++++|++|+++
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999877999999999976 467889999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=361.85 Aligned_cols=219 Identities=26% Similarity=0.398 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|..++
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 3 KIEIRDLKVSFG---------------------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred eEEEEeeEEEEC---------------------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 378999998763 24589999999999999999999999999999999998753
Q ss_pred ----CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 ----DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.++|.++.. .+++.+||++|++.+++.+||.||+.++...... ....++..+.++++++.+||.+
T Consensus 56 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14247 56 YPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWD 134 (250)
T ss_pred CCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCc
Confidence 369999999998742 4567899999999888889999999987543211 1133445567889999999864
Q ss_pred ----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 221 ----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 221 ----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. +
T Consensus 135 ~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~ 207 (250)
T PRK14247 135 EVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-Q 207 (250)
T ss_pred chhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H
Confidence 33443 458999999999999999999999999999999999999999999999865 899999999976 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+.||++++|++|++++.|+++++.
T Consensus 208 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 208 AARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHhcCEEEEEECCeEEEECCHHHHH
Confidence 67899999999999999999998763
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=367.98 Aligned_cols=203 Identities=28% Similarity=0.433 Sum_probs=177.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCC-CCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~-l~~~l 182 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.++.. ..++.+||++|++. .+...
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 459999999999999999999999999999999999874 569999999998742 35678999999975 35567
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||.||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++|||||||+
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 165 (274)
T PRK13644 94 TVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTS 165 (274)
T ss_pred hHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999999875332 2345555677899999999988777765 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++|+|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 166 gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998779999999999864 5 569999999999999999998864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=356.27 Aligned_cols=210 Identities=30% Similarity=0.526 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|.. ++
T Consensus 2 l~~~~v~~~~~~~-----------------------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~ 57 (221)
T TIGR02211 2 LKCENLGKRYQEG-----------------------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NP 57 (221)
T ss_pred EEEEeeeEEccCC-----------------------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 6789999877421 01246999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh----h---cc-ccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP----A---LK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~---~~-~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
.+|+|.++|+++.. . ++ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||++.
T Consensus 58 ~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~ 134 (221)
T TIGR02211 58 TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHR 134 (221)
T ss_pred CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhh
Confidence 69999999998742 1 23 57999999999999999999999865432 12333445678899999999877
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..
T Consensus 135 ~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~ 207 (221)
T TIGR02211 135 INHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KK 207 (221)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hh
Confidence 77654 489999999999999999999999999999999999999999999999864 8999999999863 4 45
Q ss_pred cCEEEEEeCCEEE
Q 044602 301 FDKLLLISEGYPV 313 (674)
Q Consensus 301 ~D~v~~L~~G~iv 313 (674)
+|++++|++|+++
T Consensus 208 ~d~v~~l~~G~i~ 220 (221)
T TIGR02211 208 LDRVLEMKDGQLF 220 (221)
T ss_pred cCEEEEEeCCEec
Confidence 8999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=356.08 Aligned_cols=195 Identities=29% Similarity=0.453 Sum_probs=170.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .+++.++|++|++.+++.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 45899999999999999999999999999999999987 4569999999998642 146789999999988888
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.+..... ....++..++++++++.+++.+..++.+ .+||||||||++|||||+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 94 RTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred ccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 99999999875432 2234444567889999999987766654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 313 (674)
+|||+.++..+.+.|++++++|.|+|++||++. ++...||++++|++|+++
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 166 GNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999877899999999976 477889999999999975
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=373.91 Aligned_cols=228 Identities=21% Similarity=0.367 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+...... . ..+...+|+||||+|++||+++|+|+||||||||+++|+|+++
T Consensus 5 ~l~v~nl~~~~~~~~~~~----------------~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~- 66 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF----------------K-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET- 66 (327)
T ss_pred eEEEeeeEEEEcCCCCcc----------------c-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-
Confidence 489999999886321100 0 0112469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. .+++.++||+|++ .+.|.+||.+++........ ...+++..+++.++++.+||.
T Consensus 67 p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~ 144 (327)
T PRK11308 67 PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLR 144 (327)
T ss_pred CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCC
Confidence 569999999998742 3567899999997 58899999999987654321 234556667899999999996
Q ss_pred c-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 R-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 ~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+ ..++. +++|||||||||+|||||+.+|++||+||||++||..++.++++.|+++.++ |.|+|++|||.. .+
T Consensus 145 ~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~ 218 (327)
T PRK11308 145 PEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VV 218 (327)
T ss_pred hHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH
Confidence 3 45554 5699999999999999999999999999999999999999999999999874 999999999975 46
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||+|++|++|++++.|+++++.
T Consensus 219 ~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 219 EHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=362.50 Aligned_cols=204 Identities=28% Similarity=0.414 Sum_probs=177.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----------------hccccEEE
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----------------ALKRRIGF 171 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----------------~~~~~igy 171 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 458999999999999999999999999999999999874 569999999987631 34678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 172 v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
++|++.+++..||.||+.++.... ......+..+.++++++.+|+.+..++.+ ++||||||||++|||||+.+
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHHcC
Confidence 999999999899999998864211 11234445567889999999987766654 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+++|++++|++|++++.|+++++
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999875 899999999975 46789999999999999999998876
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=359.91 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=176.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 458999999999999999999999999999999999874 569999999988742 13457999999999999999
Q ss_pred HHHHHHHHHhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 184 VEETLVFAAFLRLP--G---NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 184 V~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
|+||+.++...... . ....++..++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++|+||
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllD 168 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLD 168 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999986432100 0 0122344567899999999988777665 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 169 EPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred CCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99999999999999999999976 799999999975 47789999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=362.59 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+++|+|+|+++++||+++|+||||||||||+++|+|.. +
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 56 (255)
T PRK11300 5 LLSVSGLMMRFG---------------------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-K 56 (255)
T ss_pred eEEEeeEEEEEC---------------------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-C
Confidence 589999998763 246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC----------CCC--CHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP----------GNM--NRQQKYARVQM 211 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~ 211 (674)
+.+|+|.++|.++.. . .+..++|++|++.+++.+||+||+.++...... ... ...+..+++++
T Consensus 57 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (255)
T PRK11300 57 PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT 136 (255)
T ss_pred CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH
Confidence 569999999998742 2 244699999999999999999999986431110 000 11233456788
Q ss_pred HHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEe
Q 044602 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTI 290 (674)
Q Consensus 212 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 290 (674)
+++.+||.+..++.+ ++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|
T Consensus 137 ~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 137 WLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred HHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 999999987777665 489999999999999999999999999999999999999999999999875 89999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|++. ++.++||++++|++|++++.|+++++
T Consensus 212 H~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 212 HDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred CCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9975 57789999999999999999998876
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=360.53 Aligned_cols=209 Identities=27% Similarity=0.363 Sum_probs=175.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.. ++.+|+|.++|+++.. . .+..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 458999999999999999999999999999999999852 4679999999998642 2 234599999999999999
Q ss_pred CHHHHHHHHHhhcCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 183 TVEETLVFAAFLRLP---G-NMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 183 TV~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
|++||+.+....... . .....+..++++++++.+||++ ..++.++ .+||||||||++|||+|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999886532210 0 1122334567889999999973 4555442 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+... ||++++|++|++++.|++++..
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 9999999999999999999999877999999999976 46666 8999999999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=366.07 Aligned_cols=220 Identities=23% Similarity=0.400 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+++|+|+|+++++||+++|+||||||||||+++|+|+++ +
T Consensus 3 l~~~~l~~~~~~~~----------------------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p 59 (280)
T PRK13649 3 INLQNVSYTYQAGT----------------------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-P 59 (280)
T ss_pred EEEEEEEEEcCCCC----------------------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 78999999875210 011459999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 150 VKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
.+|+|.++|+++.. ..++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.
T Consensus 60 ~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~ 135 (280)
T PRK13649 60 TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGIS 135 (280)
T ss_pred CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 69999999998642 3466899999996 4565 59999999865332 123444556788999999997
Q ss_pred c-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 220 R-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
+ ..++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.
T Consensus 136 ~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~ 209 (280)
T PRK13649 136 ESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVA 209 (280)
T ss_pred hhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHH
Confidence 3 456554 489999999999999999999999999999999999999999999999877999999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++||++++|++|++++.|+++++.
T Consensus 210 ~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 210 NYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 889999999999999999998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=347.87 Aligned_cols=204 Identities=28% Similarity=0.501 Sum_probs=176.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~l 182 (674)
..++|++||+++++||+++|+||||+|||||||+|+|..+ +.+|+|.++|+++.. ..|..++||||...+||.|
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 4679999999999999999999999999999999999884 459999999999863 4678899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
||+|||..++..+.. ++......+++.+.|- |.+..+++-| .|||||||.++|||||+.+|++|+|||||
T Consensus 94 TVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 94 TVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred cHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999998654321 1122222677887773 5566666655 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.||-|.-.++|.+.+++++++ |.||+++-++.. ...+++||.++|.+|++++.|+.+|+.
T Consensus 165 ~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 165 EGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999976 779999887754 578899999999999999999999885
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=362.35 Aligned_cols=200 Identities=32% Similarity=0.496 Sum_probs=174.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. .++.++|++|++.+++.+||.||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHHHHH
Confidence 45899999999999999999999999999999999987 4569999999998753 335699999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+....+ .....+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 163 (255)
T PRK11248 92 AFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 (255)
T ss_pred HhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 8865432 2334445567899999999987777654 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe--CCEEEEecChh
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS--EGYPVYYGKAR 319 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 319 (674)
+..+.+.|+++++ +|+|||++||++. .+.++||++++|+ +|+++..++.+
T Consensus 164 ~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 164 REQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999865 5899999999976 5788999999998 59999988654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=363.50 Aligned_cols=219 Identities=25% Similarity=0.387 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.
T Consensus 6 ~~l~i~~l~~~~~~-------------------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~- 59 (269)
T PRK13648 6 SIIVFKNVSFQYQS-------------------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE- 59 (269)
T ss_pred ceEEEEEEEEEcCC-------------------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 35899999997741 1245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|+++.. ..++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 136 (269)
T PRK13648 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERA 136 (269)
T ss_pred CCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 4569999999998742 45678999999974 677789999998875332 123444556788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .|
T Consensus 137 ~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~ 209 (269)
T PRK13648 137 DYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EA 209 (269)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cC
Confidence 7654 589999999999999999999999999999999999999999999999765 8999999999864 54 49
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 210 d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 210 DHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=363.31 Aligned_cols=217 Identities=28% Similarity=0.469 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~ 53 (258)
T PRK13548 2 MLEARNLSVRLG---------------------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-S 53 (258)
T ss_pred eEEEEeEEEEeC---------------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 378899998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++
T Consensus 54 p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~ 130 (258)
T PRK13548 54 PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGR 130 (258)
T ss_pred CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcC
Confidence 569999999998642 34567999999998878889999999864321 11223344568899999999877777
Q ss_pred cccCCccCccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHH
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEIL------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRM 297 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i 297 (674)
.+ .+||||||||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++
T Consensus 131 ~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~ 204 (258)
T PRK13548 131 DY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LA 204 (258)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HH
Confidence 65 489999999999999999 5999999999999999999999999999998 56899999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 205 ~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 205 ARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHhcCEEEEEECCEEEeeCCHHHHh
Confidence 7899999999999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=361.71 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|.+++
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 7 IIETENLNLFYT---------------------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eEEEeeeEEEeC---------------------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 589999999773 14589999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.++..... .....+..++++++++.+++
T Consensus 60 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 136 (254)
T PRK14273 60 VEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSAL 136 (254)
T ss_pred CcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCC
Confidence 258999999988631 35678999999988886 799999998754321 11233445678889999987
Q ss_pred C----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 E----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
. +..++. +++||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.
T Consensus 137 ~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 137 WNEVKDKLNTN-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred chhhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 3 334544 458999999999999999999999999999999999999999999999964 799999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|+++..|+++++.
T Consensus 211 -~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 211 -QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477889999999999999999998863
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=365.64 Aligned_cols=219 Identities=26% Similarity=0.463 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..
T Consensus 6 ~~l~~~nl~~~~~~-------------------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~- 59 (271)
T PRK13632 6 VMIKVENVSFSYPN-------------------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL- 59 (271)
T ss_pred eEEEEEeEEEEcCC-------------------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 46899999997741 1256999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|.++.. .+++.++|++|++. .++.+||+||+.++.... ....++..++++++++.+||.+..
T Consensus 60 ~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 136 (271)
T PRK13632 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYL 136 (271)
T ss_pred CCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHh
Confidence 4569999999998752 45778999999974 667789999999875322 223444556789999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||++.. + ..|
T Consensus 137 ~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~ 209 (271)
T PRK13632 137 DKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILA 209 (271)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhC
Confidence 7765 489999999999999999999999999999999999999999999999876 5999999999864 4 479
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|+++..|+++++.
T Consensus 210 d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 210 DKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999988764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=364.03 Aligned_cols=216 Identities=31% Similarity=0.508 Sum_probs=186.1
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|.. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++
T Consensus 2 l~~~~l~~~~~~--------------------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~ 54 (275)
T PRK13639 2 LETRDLKYSYPD--------------------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KP 54 (275)
T ss_pred EEEEEEEEEeCC--------------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 688999987731 245899999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
.+|+|.++|+++.. ..++.++|++|++ .+++ .||.||+.++.... ...+++..+++.++++.+||.+.
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~ 130 (275)
T PRK13639 55 TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGF 130 (275)
T ss_pred CccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchh
Confidence 69999999998731 2467899999996 3454 69999998864321 23444555678899999999887
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++.+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++|
T Consensus 131 ~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~ 204 (275)
T PRK13639 131 ENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYA 204 (275)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhC
Confidence 77765 489999999999999999999999999999999999999999999999877999999999975 467889
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 205 d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 205 DKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=360.81 Aligned_cols=219 Identities=26% Similarity=0.390 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+++|+|.+++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 4 AIETVNLRVYYG---------------------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred eEEEEeEEEEeC---------------------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 488999998773 14589999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCC--h----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYN--P----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. . .+++.++|++|++.+++.+||.||+.++...+. .....++..++++++++.+||
T Consensus 57 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l 135 (253)
T PRK14267 57 NEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAAL 135 (253)
T ss_pred ccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCC
Confidence 25899999999874 1 356789999999999999999999998754321 011234445678889999998
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 136 ~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 209 (253)
T PRK14267 136 WDEVKDRLNDY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA 209 (253)
T ss_pred ccchhhhhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 53 23333 458999999999999999999999999999999999999999999999975 799999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++||++++|++|++++.|+++++.
T Consensus 210 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 210 -QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred -HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=405.03 Aligned_cols=268 Identities=27% Similarity=0.394 Sum_probs=209.0
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcccc---CCCCceeEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIEK---DRPLPIFLKF 72 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 72 (674)
...+|++++.+|..+.|.++++..+... .++.. ++.+.+++... .......+++
T Consensus 242 ~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~--~~l~~~~~~~~~~~~~~~~~~i~~ 319 (544)
T TIGR01842 242 VLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLN--ELLANYPSRDPAMPLPEPEGHLSV 319 (544)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCccccCCCCCCCCCCeEEE
Confidence 4467888899999999999887655421 00100 22222111111 1111235999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+|++|+|+. +.+++|+|+|++++|||.++|+||||||||||+|+|+|.+ ++.+|
T Consensus 320 ~~v~~~y~~-------------------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G 373 (544)
T TIGR01842 320 ENVTIVPPG-------------------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSG 373 (544)
T ss_pred EEEEEEcCC-------------------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCc
Confidence 999998852 1256899999999999999999999999999999999987 45699
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCCcccc
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY-----ARVQMILKELGLERCRH 223 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~ 223 (674)
+|.+||+++.+ .+++.++||+|++.+|++ |++||+.++.. ..++++.. ...++.++.+ ++..|
T Consensus 374 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~ 445 (544)
T TIGR01842 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYD 445 (544)
T ss_pred eEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccc
Confidence 99999998753 578899999999999997 99999986421 12222211 1234455544 56678
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+. ...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.++|+|+|+++|+++. .+.||+
T Consensus 446 t~~~~~-g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~--~~~~d~ 522 (544)
T TIGR01842 446 TVIGPG-GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL--LGCVDK 522 (544)
T ss_pred cccCCC-cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCE
Confidence 888764 45799999999999999999999999999999999999999999999987668999999999863 578999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++++.+
T Consensus 523 i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEECCEEEeeCCHHHHhh
Confidence 99999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=365.56 Aligned_cols=218 Identities=30% Similarity=0.471 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. .+.+|+|+||++++||+++|+||||||||||+|+|+|.+ +
T Consensus 3 ~l~~~~l~~~~~~--------------------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~ 55 (277)
T PRK13652 3 LIETRDLCYSYSG--------------------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-K 55 (277)
T ss_pred eEEEEEEEEEeCC--------------------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 3789999997731 135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+|||+|++. .+...||.||+.+..... ....++..++++++++.+||.+..+
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~ 132 (277)
T PRK13652 56 PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRD 132 (277)
T ss_pred CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhc
Confidence 569999999998742 45678999999963 233569999998865322 2344555667899999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||
T Consensus 133 ~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~d 206 (277)
T PRK13652 133 RVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMAD 206 (277)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCC
Confidence 765 489999999999999999999999999999999999999999999999875 899999999976 4778999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 207 rv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 207 YIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred EEEEEECCeEEEECCHHHHh
Confidence 99999999999999999875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=356.33 Aligned_cols=198 Identities=28% Similarity=0.454 Sum_probs=167.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCC--CCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLP 180 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~ 180 (674)
++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 5999999999999999999999999999999999987 4569999999998742 3467899999998 5677
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYAR-VQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
.+||+||+.+....... ....+..+. ++++++.+++. +..++.+ .+||||||||++|||+|+.+|++|+||
T Consensus 98 ~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 98 RMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred cCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 89999999886543211 112222222 36889999995 4556554 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999876 899999999975 467789999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=373.28 Aligned_cols=226 Identities=22% Similarity=0.311 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|..+ .+...+|+||||++++||+++|+|+||||||||+++|+|++++
T Consensus 3 ~L~v~~l~~~~~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 3 LLNVDKLSVHFGDE-----------------------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred eEEEeCeEEEECCC-----------------------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 47999999988521 1124699999999999999999999999999999999998853
Q ss_pred ---CCccEEEECCEeCCh----hc----cccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 149 ---DVKGNITYNDIPYNP----AL----KRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 149 ---~~~G~I~~~g~~~~~----~~----~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
+++|+|.++|+++.. .+ ++.++||+|++ .+.|.+||.+++........ ...+++..+++.++++.
T Consensus 60 ~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~ 137 (326)
T PRK11022 60 PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQ 137 (326)
T ss_pred CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 368999999998742 11 24699999997 47899999998876654321 23455667789999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 294 (674)
+||.+..+ .-+.++++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|++|||+.
T Consensus 138 ~gL~~~~~--~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 138 VGIPDPAS--RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred CCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99975211 11234669999999999999999999999999999999999999999999999987 4899999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+++|+|++|++|++++.|+++++.
T Consensus 216 -~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 216 -LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=353.75 Aligned_cols=195 Identities=29% Similarity=0.520 Sum_probs=170.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 45899999999999999999999999999999999987 4569999999998731 3467899999999999989
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+.||+.++.... .....++..++++++++.+|+++..++.+ ++||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~ 164 (213)
T cd03262 92 TVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164 (213)
T ss_pred cHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999998864311 12234445567889999999987777664 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 165 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 165 ALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999877899999999975 47789999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=441.94 Aligned_cols=221 Identities=27% Similarity=0.377 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+.. .+++||+|+||+++|||.+||+||||||||||+++|.|++.
T Consensus 1164 g~I~f~nVsF~Y~~~------------------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR------------------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred ceEEEEEEEEECCCC------------------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 359999999999631 12469999999999999999999999999999999999775
Q ss_pred CC-----------------------------------------------------CccEEEECCEeCCh----hccccEE
Q 044602 148 DD-----------------------------------------------------VKGNITYNDIPYNP----ALKRRIG 170 (674)
Q Consensus 148 ~~-----------------------------------------------------~~G~I~~~g~~~~~----~~~~~ig 170 (674)
+. .+|+|++||+++.+ .+|+.||
T Consensus 1220 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~ 1299 (1466)
T PTZ00265 1220 LKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS 1299 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc
Confidence 41 59999999999863 6899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH
Q 044602 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY-----ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG 245 (674)
Q Consensus 171 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA 245 (674)
||+|++.||++ |++|||.|+.. +.+.++.. ..+++.++ .|++.+||.||+.+ ..||||||||++||
T Consensus 1300 ~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~G-~~LSGGQkQRIaIA 1370 (1466)
T PTZ00265 1300 IVSQEPMLFNM-SIYENIKFGKE-----DATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYG-KSLSGGQKQRIAIA 1370 (1466)
T ss_pred EeCCCCccccc-cHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHH--hCccccCCccCCCC-CcCCHHHHHHHHHH
Confidence 99999999987 99999999732 22332221 12233443 35889999999765 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhcCEEEEEeC----CEEE-EecChh
Q 044602 246 YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLISE----GYPV-YYGKAR 319 (674)
Q Consensus 246 ~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~ 319 (674)
|||+++|+|||||||||+||+++++.|++.|+++. .+++|+|+++|+++. .+.||+|++|++ |+++ +.|+++
T Consensus 1371 RALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 99999999999999999999999999999999986 358999999999864 678999999999 9955 899999
Q ss_pred HHHH
Q 044602 320 ESME 323 (674)
Q Consensus 320 ~~~~ 323 (674)
|+++
T Consensus 1449 eLl~ 1452 (1466)
T PTZ00265 1449 ELLS 1452 (1466)
T ss_pred HHHh
Confidence 9863
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=362.47 Aligned_cols=220 Identities=28% Similarity=0.446 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++ +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 53 (255)
T PRK11231 2 TLRTENLTVGYG---------------------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-T 53 (255)
T ss_pred EEEEEeEEEEEC---------------------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-C
Confidence 478899998763 246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++...... ....+.+..++++++++.+||.+..+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (255)
T PRK11231 54 PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD 133 (255)
T ss_pred CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc
Confidence 569999999998642 3456799999999888889999999886321000 01112334557889999999987777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus 134 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 134 RRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 664 489999999999999999999999999999999999999999999999877999999999976 57889999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 044602 304 LLLISEGYPVYYGKARESM 322 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~ 322 (674)
+++|++|+++..|+++++.
T Consensus 208 i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 208 LVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred EEEEECCeEEEEcCHHHhc
Confidence 9999999999999988763
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=407.62 Aligned_cols=266 Identities=25% Similarity=0.414 Sum_probs=207.7
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh------------------hcccccc-ccccCCCcc---cc---CCCCceeE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL------------------RNRYSEI-DIVDESSSI---EK---DRPLPIFL 70 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~---~~---~~~~~~~l 70 (674)
.++.+|++.+.+|..++|.++++..+... ......+ ++.+...+. .. ....+..+
T Consensus 256 ~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I 335 (588)
T PRK13657 256 AILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335 (588)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeE
Confidence 45567888999999999999887654321 0000000 222211110 01 01112359
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+++||+|+|+. .+++|+|+|++++|||.++|+|+||||||||+|+|+|++ ++.
T Consensus 336 ~~~~vsf~y~~--------------------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~ 388 (588)
T PRK13657 336 EFDDVSFSYDN--------------------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQ 388 (588)
T ss_pred EEEEEEEEeCC--------------------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCC
Confidence 99999998852 135899999999999999999999999999999999987 456
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CC
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LE 219 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 219 (674)
+|+|.+||+++++ .+++.|+||+|++.+|++ |++|||.++. + +.+++ ++.++++..+ ++
T Consensus 389 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp 458 (588)
T PRK13657 389 SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKP 458 (588)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCc
Confidence 9999999998863 578899999999999997 9999999862 1 12222 2333334333 46
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..||.+|+.+ +.||||||||++|||||+++|+|++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+
T Consensus 459 ~gldt~i~~~g-~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~ 534 (588)
T PRK13657 459 DGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVR 534 (588)
T ss_pred ccccchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHH
Confidence 67889888653 5699999999999999999999999999999999999999999999885 4899999999985 467
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+|+|++|++|++++.|++++++
T Consensus 535 ~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 535 NADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 89999999999999999999885
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=353.48 Aligned_cols=193 Identities=31% Similarity=0.546 Sum_probs=167.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lT 183 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|+++.. ..++.++|++|++. .++.+|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 469999999999999999999999999999999999874 569999999998742 35678999999974 356789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 93 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~ 164 (211)
T cd03225 93 VEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164 (211)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 1233444567889999999987777654 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 165 LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999877999999999975 5778899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=362.05 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|++ +
T Consensus 12 ~l~i~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~ 63 (257)
T PRK11247 12 PLLLNAVSKRYG---------------------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-T 63 (257)
T ss_pred cEEEEEEEEEEC---------------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 489999999773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
+.+|+|.++|.++. ..++.++|++|++.+++.+||+||+.++.. . ...++++++++.+||.+..++.+
T Consensus 64 p~~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~-- 131 (257)
T PRK11247 64 PSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWP-- 131 (257)
T ss_pred CCCeEEEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCCh--
Confidence 56999999998764 356789999999999998999999987521 1 12356788999999987777654
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|
T Consensus 132 ---~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l 207 (257)
T PRK11247 132 ---AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLI 207 (257)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 48999999999999999999999999999999999999999999999865 4899999999976 467889999999
Q ss_pred eCCEEEEecChh
Q 044602 308 SEGYPVYYGKAR 319 (674)
Q Consensus 308 ~~G~iv~~G~~~ 319 (674)
++|++++.|+.+
T Consensus 208 ~~G~i~~~~~~~ 219 (257)
T PRK11247 208 EEGKIGLDLTVD 219 (257)
T ss_pred ECCEEEeecccc
Confidence 999999888654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=359.88 Aligned_cols=222 Identities=23% Similarity=0.354 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.
T Consensus 4 ~~~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 4 PPKMEARGLSFFYG---------------------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CcEEEEeeeEEEEC---------------------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999773 145899999999999999999999999999999999975
Q ss_pred C--C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 147 T--D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 147 ~--~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
. + +.+|+|.++|+++.. .+++.++|++|++.+++. ||+||+.++...+. ....++..++++++++.+
T Consensus 57 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~ 133 (253)
T PRK14242 57 DLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHA 133 (253)
T ss_pred ccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHc
Confidence 3 2 468999999998742 346789999999988885 99999998754321 112334456788899999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|+.+...+.. +..+++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. +
T Consensus 134 ~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~ 210 (253)
T PRK14242 134 ALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-Q 210 (253)
T ss_pred CCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-H
Confidence 9854221111 123458999999999999999999999999999999999999999999999964 899999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++||++++|++|++++.|+++++
T Consensus 211 ~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 211 AARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHH
Confidence 7789999999999999999998876
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=362.79 Aligned_cols=227 Identities=24% Similarity=0.381 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+..... . ..+.+.+|+|+|+++++||+++|+||||||||||+++|+|.+ +
T Consensus 2 ~l~~~~l~~~~~~~~~~-----------------~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 62 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF-----------------G-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-K 62 (265)
T ss_pred eEEEEeEEEEeccCccc-----------------c-ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 37899999988521000 0 011356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. ..++.++|++|++ .+++.+||+||+.+..... ......+..++++++++.+||.
T Consensus 63 p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~ 140 (265)
T TIGR02769 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLR 140 (265)
T ss_pred CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCC
Confidence 569999999998742 1456799999996 4677889999998764321 1123344556789999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+
T Consensus 141 ~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~ 214 (265)
T TIGR02769 141 SEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LV 214 (265)
T ss_pred hhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence 5566654 489999999999999999999999999999999999999999999999875 899999999975 46
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 215 ~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 215 QSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHhcEEEEEeCCEEEEECCHHHHc
Confidence 7789999999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=364.22 Aligned_cols=218 Identities=27% Similarity=0.437 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++
T Consensus 5 ~l~i~~l~~~~~~-------------------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 5 IVEFKHVSFTYPD-------------------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred eEEEEEEEEEcCC-------------------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 5899999997741 124589999999999999999999999999999999998854
Q ss_pred CCc---cEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVK---GNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~---G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
.+ |+|.++|+++.. ..++.+||++|++. +++..||.||+.|..... ..+.++..++++++++.+||.+
T Consensus 60 -~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~ 135 (282)
T PRK13640 60 -DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLD 135 (282)
T ss_pred -CCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChh
Confidence 34 999999998753 35678999999974 566789999998864332 2345566678899999999987
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + .
T Consensus 136 ~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~ 208 (282)
T PRK13640 136 YIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-N 208 (282)
T ss_pred HhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-H
Confidence 777654 589999999999999999999999999999999999999999999999875 8999999999864 4 5
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.||++++|++|++++.|+++++.
T Consensus 209 ~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 209 MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred hCCEEEEEECCEEEEeCCHHHHh
Confidence 79999999999999999998874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=379.67 Aligned_cols=206 Identities=25% Similarity=0.442 Sum_probs=181.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h----ccccEEEEccCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A----LKRRIGFVTQDDVL 178 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~----~~~~igyv~Q~~~l 178 (674)
+...+|+|+||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. . .++.+|||+|++.+
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 33458999999999999999999999999999999999874 569999999998742 1 13579999999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
++++||+||+.++...+ ....++..++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999986543 2344555678899999999988777654 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999976 4899999999975 578899999999999999999998874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=361.75 Aligned_cols=223 Identities=24% Similarity=0.355 Sum_probs=185.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 18 ~~l~~~nl~~~~~---------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 18 IKMRARDVSVFYG---------------------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred ceEEEEeEEEEEC---------------------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3689999999773 2459999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. .+++.++|++|++.+++. ||.||+.++...+.. ...+.+..++++++++.+|
T Consensus 71 ~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 148 (267)
T PRK14235 71 TIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAG 148 (267)
T ss_pred cccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcC
Confidence 4 469999999998742 346789999999988886 999999987543210 1123344567889999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+...... +..+++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+
T Consensus 149 l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~ 225 (267)
T PRK14235 149 LWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QA 225 (267)
T ss_pred CchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HH
Confidence 964211111 123458999999999999999999999999999999999999999999999975 789999999976 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||++++|++|++++.|+++++.
T Consensus 226 ~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 226 ARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HhhCCEEEEEECCEEEEeCCHHHHH
Confidence 7899999999999999999988763
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=364.02 Aligned_cols=221 Identities=24% Similarity=0.426 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~---------------------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 61 (280)
T PRK13633 4 MIKCKNVSYKYESNEE---------------------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI- 61 (280)
T ss_pred eEEEeeeEEEcCCCCC---------------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 4899999998852110 012569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|.++.. ..++.+||++|++. +++ .||.||+.|+.... ...+.+..++++++++.+||.+.
T Consensus 62 ~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~ 137 (280)
T PRK13633 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEY 137 (280)
T ss_pred CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhH
Confidence 569999999998742 35678999999974 444 59999999875432 23445556778999999999888
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ ++||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++.. +..
T Consensus 138 ~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~- 210 (280)
T PRK13633 138 RRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE- 210 (280)
T ss_pred hhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-
Confidence 77765 489999999999999999999999999999999999999999999999764 9999999999875 444
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 211 ~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 211 ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999875
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=362.66 Aligned_cols=221 Identities=26% Similarity=0.415 Sum_probs=187.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|..
T Consensus 10 ~~l~i~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~- 61 (265)
T PRK10575 10 TTFALRNVSFRVP---------------------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ- 61 (265)
T ss_pred ceEEEeeEEEEEC---------------------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-
Confidence 3589999998773 246999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++...... ....+....++++++++.++|.+..
T Consensus 62 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 141 (265)
T PRK10575 62 PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA 141 (265)
T ss_pred CCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence 4569999999988642 3567899999998888889999999876321100 0011223346788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.|
T Consensus 142 ~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~ 215 (265)
T PRK10575 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYC 215 (265)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7665 489999999999999999999999999999999999999999999999765 899999999975 577899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 216 d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 216 DYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CEEEEEECCeEEEecCHHHhc
Confidence 999999999999999987763
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=354.68 Aligned_cols=199 Identities=28% Similarity=0.524 Sum_probs=167.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC--CCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~--~~lTV~e 186 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++. ..++.++|++|++.+. ..+||+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e 89 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRD 89 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHH-HHHhheEEeccccccccCCCCcHHH
Confidence 459999999999999999999999999999999999874 56999999998764 3567899999998763 3379999
Q ss_pred HHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 187 TLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 187 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|+.+....... .....++..++++++++.+|+++..++.+ .+||||||||++|||||+.+|++|+|||||+|||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 164 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99886432110 00112334567889999999987777655 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|++++++|+|+|++||++. ++.++||++++|++| +++.|
T Consensus 165 ~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 165 PKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999877999999999975 477899999999886 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=371.41 Aligned_cols=228 Identities=20% Similarity=0.323 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.+ .+...+|+||||+|++||+++|+|+||||||||+++|+|++++
T Consensus 3 ~L~v~~l~~~y~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~ 59 (330)
T PRK15093 3 LLDIRNLTIEFKTS-----------------------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD 59 (330)
T ss_pred eEEEeeeEEEEeCC-----------------------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC
Confidence 48999999988532 1224699999999999999999999999999999999998752
Q ss_pred ---CCccEEEECCEeCCh----h---c-cccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHH
Q 044602 149 ---DVKGNITYNDIPYNP----A---L-KRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGN---MNRQQKYARVQMI 212 (674)
Q Consensus 149 ---~~~G~I~~~g~~~~~----~---~-~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~ 212 (674)
+.+|+|.++|+++.. . . ++.++||+|++. +.|.+||.+++.+......... ....+..+++.++
T Consensus 60 ~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (330)
T PRK15093 60 NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIEL 139 (330)
T ss_pred CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 468999999998742 1 1 347999999975 6788999999986432110000 1123445678999
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
++.+||.+..+ ..+.++.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++||
T Consensus 140 L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH 217 (330)
T PRK15093 140 LHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 (330)
T ss_pred HHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999975321 112345699999999999999999999999999999999999999999999999875 999999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+. .+.++||+|++|++|++++.|+++++.
T Consensus 218 dl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 218 DLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 975 477899999999999999999998774
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=347.82 Aligned_cols=211 Identities=30% Similarity=0.560 Sum_probs=198.3
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++.+++|+||+++||++++++|||||||||.+++|.|++. +++|+|.++|.+++...+.+|||.|.+..|++.+||.|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~d 91 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVED 91 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHH
Confidence 45789999999999999999999999999999999999984 56999999999999888899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
.|.|.+.++ ++++++.+++++.+|+++++......+| ++||-|++|++.+-.+++++|++++||||+|||||
T Consensus 92 ql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP 163 (300)
T COG4152 92 QLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP 163 (300)
T ss_pred HHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh
Confidence 999999887 6788999999999999999998887766 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
.+.+.+.+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|..
T Consensus 164 VN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 164 VNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred hhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence 9999999999999999999999999976 58999999999999999999999999876643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=362.49 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.+
T Consensus 6 ~~l~i~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~- 57 (265)
T PRK10253 6 ARLRGEQLTLGYG---------------------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM- 57 (265)
T ss_pred cEEEEEEEEEEEC---------------------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-
Confidence 3589999999774 245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.....+ .....+...++++++++.+||.+..
T Consensus 58 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (265)
T PRK10253 58 TPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA 137 (265)
T ss_pred CCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence 4569999999998642 3456799999999999889999999875311100 0001123445788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|
T Consensus 138 ~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~ 211 (265)
T PRK10253 138 DQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYA 211 (265)
T ss_pred cCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7654 589999999999999999999999999999999999999999999999874 899999999975 478999
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 212 d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 212 SHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=361.27 Aligned_cols=220 Identities=26% Similarity=0.459 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|...+
T Consensus 4 ~l~~~nl~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 4 IIRVEKLAKTFN---------------------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EEEEeeEEEEeC---------------------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 589999998763 24689999999999999999999999999999999998754
Q ss_pred C--CccEEEECCEeCCh---------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHH
Q 044602 149 D--VKGNITYNDIPYNP---------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-----NMNRQQKYARVQMI 212 (674)
Q Consensus 149 ~--~~G~I~~~g~~~~~---------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~ 212 (674)
. .+|+|.++|.++.. ..++.++|++|++.+++.+||.||+.+......+. ....++..++++++
T Consensus 57 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (262)
T PRK09984 57 DKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA 136 (262)
T ss_pred CCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHH
Confidence 3 36999999987631 23567999999999999999999998764211000 01123345678999
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||
T Consensus 137 l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH 211 (262)
T PRK09984 137 LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLH 211 (262)
T ss_pred HHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99999987777765 489999999999999999999999999999999999999999999999864 899999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
++. .+.+.||++++|++|++++.|++++.
T Consensus 212 ~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 212 QVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 975 47789999999999999999998764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=352.58 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=180.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|++
T Consensus 5 ~~l~~~~l~~~~~~~-----------------------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~- 60 (228)
T PRK10584 5 NIVEVHHLKKSVGQG-----------------------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD- 60 (228)
T ss_pred ceEEEeeeEEEccCC-----------------------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-
Confidence 358999999987421 01135899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 148 DDVKGNITYNDIPYNP----A---L-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
++.+|+|.++|+++.. . . ++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.++|.
T Consensus 61 ~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~ 137 (228)
T PRK10584 61 DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLG 137 (228)
T ss_pred CCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCH
Confidence 4569999999998742 1 2 357999999999999999999998865332 123445567789999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. +
T Consensus 138 ~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~- 210 (228)
T PRK10584 138 KRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A- 210 (228)
T ss_pred hHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-
Confidence 7777655 489999999999999999999999999999999999999999999999764 8999999999863 4
Q ss_pred hhcCEEEEEeCCEEEEe
Q 044602 299 HMFDKLLLISEGYPVYY 315 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~ 315 (674)
..+|++++|++|++++.
T Consensus 211 ~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 211 ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HhCCEEEEEECCEEEec
Confidence 55999999999998753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=360.00 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=176.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 469999999999999999999999999999999999874 569999999998743 345679999999877788899
Q ss_pred HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 185 EETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 185 ~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
.||+.++...... ......+..++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+|
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 167 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNH 167 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 9999885321000 00112233457889999999987777765 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 168 LDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999877899999999986 47789999999999999999998876
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=406.16 Aligned_cols=267 Identities=26% Similarity=0.381 Sum_probs=210.2
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh--------hcc----------cccc-ccccCCCccc----cCCCCceeEEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSEI-DIVDESSSIE----KDRPLPIFLKFE 73 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~~-~~~~~~~~~~----~~~~~~~~l~~~ 73 (674)
+..+|++.+.+|..++|.++++...... .+. ...+ ++.+.+++.. ........++++
T Consensus 255 ~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 334 (571)
T TIGR02203 255 VLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFR 334 (571)
T ss_pred HHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEE
Confidence 4567888899999999999888755421 000 0000 2222111111 011112359999
Q ss_pred eEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE
Q 044602 74 DVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153 (674)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~ 153 (674)
||+|+|+. ..+++|+|+|+++++||.++|+|+||||||||+|+|+|+. ++.+|+
T Consensus 335 ~v~f~y~~-------------------------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~ 388 (571)
T TIGR02203 335 NVTFRYPG-------------------------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQ 388 (571)
T ss_pred EEEEEcCC-------------------------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCe
Confidence 99998852 1246999999999999999999999999999999999987 456999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccc
Q 044602 154 ITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCR 222 (674)
Q Consensus 154 I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~ 222 (674)
|.+||+++++ +++++++||+|++.+|++ |++|||.++.. .+.++ ++++++++.+| |++..
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~gl 459 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQADR----AEIERALAAAYAQDFVDKLPLGL 459 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCCH----HHHHHHHHHcChHHHHHhCcCcc
Confidence 9999998753 578899999999999998 99999997631 12232 34445555544 35678
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
||.+|+.+ +.||||||||++||||++++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.||
T Consensus 460 dt~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D 535 (571)
T TIGR02203 460 DTPIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKAD 535 (571)
T ss_pred cceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCC
Confidence 99998764 5799999999999999999999999999999999999999999999885 4799999999985 478899
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++|+++..|++++++
T Consensus 536 ~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 536 RIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999885
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=413.77 Aligned_cols=268 Identities=25% Similarity=0.411 Sum_probs=209.8
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hccc----------cc-cccccCCCccc--c---CCCCceeEE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRY----------SE-IDIVDESSSIE--K---DRPLPIFLK 71 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------~~-~~~~~~~~~~~--~---~~~~~~~l~ 71 (674)
-...+|++++.+|.++.|.++++...... .+.. .. .++.+.+++.. . .......++
T Consensus 378 ~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~ 457 (694)
T TIGR01846 378 ILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAIT 457 (694)
T ss_pred HhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEE
Confidence 34567899999999999999887655321 0000 00 02222211111 1 111234699
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+. +.+.+|+|+|+++++||.+||+|+||||||||+|+|+|++ ++.+
T Consensus 458 ~~~vsf~y~~-------------------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~ 511 (694)
T TIGR01846 458 FENIRFRYAP-------------------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQH 511 (694)
T ss_pred EEEEEEEcCC-------------------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCC
Confidence 9999998852 2246999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 220 (674)
|+|++||+++++ .+|+.++||+|++.+|++ |++|||.++.. +.+.+ .+.++++..+ +++
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~ 581 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFE----HVIHAAKLAGAHDFISELPQ 581 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHH----HHHHHHHHcChHHHHHhCcC
Confidence 999999999863 578899999999999997 99999987531 12222 2233333332 366
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.
T Consensus 582 gl~t~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~ 657 (694)
T TIGR01846 582 GYNTEVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRA 657 (694)
T ss_pred ccCcEecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHh
Confidence 7899998754 5799999999999999999999999999999999999999999999985 58999999999864 567
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++++++
T Consensus 658 ~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 658 CDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred CCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=403.23 Aligned_cols=216 Identities=31% Similarity=0.534 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+|++++|||.+||+||||||||||+|+|+|..
T Consensus 337 ~~i~~~~v~f~y~~-------------------------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~- 390 (574)
T PRK11160 337 VSLTLNNVSFTYPD-------------------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW- 390 (574)
T ss_pred CeEEEEEEEEECCC-------------------------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 46999999998852 1246999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||+++++ .+|+.++||+|++.+|++ |++||+.++.. +.+ ++++.++++..++
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~ 460 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLE 460 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHc
Confidence 5569999999999763 578899999999999997 99999998631 112 2345666777666
Q ss_pred -CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 -ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 -~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++..||.+|+.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++.
T Consensus 461 ~p~GldT~vge~g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-- 536 (574)
T PRK11160 461 DDKGLNAWLGEGG-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-- 536 (574)
T ss_pred CccccCchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--
Confidence 456789998754 5699999999999999999999999999999999999999999999986 48999999999865
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||+|++|++|++++.|+++|+++
T Consensus 537 ~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 537 LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 56799999999999999999999864
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=354.69 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=171.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 469999999999999999999999999999999999874 569999999998742 23567999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+.||+.++..... .. ..+..+++++.++ +.+..++.+ ++||||||||++|||+|+.+|++++|||||+
T Consensus 92 v~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 92 VEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred HHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 9999998754321 11 1234567777776 455556554 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999874 899999999975 57778999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=351.79 Aligned_cols=198 Identities=30% Similarity=0.479 Sum_probs=174.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++...-++.++|++|++.+++.+|++||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 45899999999999999999999999999999999987 45699999999987543235799999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+...... .. .+++.++++.+||.+..++.+ ..||||||||++||||++.+|++|+|||||+|||+.+
T Consensus 92 ~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 92 KVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 88754321 11 246788999999988777654 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
+..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++.+
T Consensus 160 ~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 160 IQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999877999999999976 4778999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=358.15 Aligned_cols=218 Identities=23% Similarity=0.353 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+|+|+|+.++
T Consensus 4 ~l~i~~v~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 4 RIDVKDLNIYYG---------------------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred cEEEeeEEEEEC---------------------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 478999998773 14589999999999999999999999999999999998753
Q ss_pred ----CCccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. ...++.++|++|++.+++.+||+||+.++...+. ...+++..++++++++.+||
T Consensus 57 ~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 134 (258)
T PRK14241 57 IPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANL 134 (258)
T ss_pred ccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCC
Confidence 26999999998863 1356789999999999999999999998754321 11334455678899999998
Q ss_pred C----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 E----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
. +..++. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 135 ~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~ 208 (258)
T PRK14241 135 WNEVKDRLDKP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ 208 (258)
T ss_pred chhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH
Confidence 4 233443 458999999999999999999999999999999999999999999999964 799999999975
Q ss_pred hHHHhhcCEEEEEe------CCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLIS------EGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 322 (674)
++.+.||++++|+ +|++++.|+++++.
T Consensus 209 -~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 209 -QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred -HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 4778999999997 79999999998764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=358.59 Aligned_cols=218 Identities=24% Similarity=0.390 Sum_probs=184.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 12 ~~l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 12 SKIQVRNLNFYYG---------------------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred ceEEEEEEEEEeC---------------------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4589999999773 1358999999999999999999999999999999999874
Q ss_pred --C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 --D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 --~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. .+++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.++
T Consensus 65 ~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 141 (260)
T PRK10744 65 LYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAA 141 (260)
T ss_pred cCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcC
Confidence 2 468999999988731 35678999999998888 799999998753221 1334445567889999999
Q ss_pred CCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.+ ..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++
T Consensus 142 l~~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~ 215 (260)
T PRK10744 142 LWNEVKDKLHQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM 215 (260)
T ss_pred CChhhHHHHhcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 853 23433 458999999999999999999999999999999999999999999999964 78999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.+++|++++|++|++++.|+++++.
T Consensus 216 ~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 216 Q-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 477899999999999999999988763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=355.73 Aligned_cols=222 Identities=25% Similarity=0.366 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL- 146 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~- 146 (674)
+.++++|+++.|+ .+++|+|+||++++||+++|+||||||||||+|+|+|..
T Consensus 2 ~~l~~~~~~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14245 2 VKIDARDVNFWYG---------------------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND 54 (250)
T ss_pred cEEEEEEEEEEEC---------------------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc
Confidence 3588999998763 245899999999999999999999999999999999962
Q ss_pred -CCC--CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 147 -TDD--VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 147 -~~~--~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
.++ .+|+|.++|+++.. ..++.++|++|++.+++ .||.||+.++...+. ....+...+.++++++.+|
T Consensus 55 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 131 (250)
T PRK14245 55 LIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAA 131 (250)
T ss_pred ccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcC
Confidence 232 48999999998742 34668999999998887 599999998754321 1122334567889999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+...+.. +..+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. .+
T Consensus 132 l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~ 208 (250)
T PRK14245 132 LWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QA 208 (250)
T ss_pred CCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HH
Confidence 864321111 12345899999999999999999999999999999999999999999999995 4899999999976 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 209 ~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 209 ARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HhhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998874
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.40 Aligned_cols=193 Identities=26% Similarity=0.439 Sum_probs=167.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+||+.++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 999999999999999999999999999999987 4569999999998753 2356799999999999999999999876
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
..... . ..++..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..
T Consensus 95 ~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~ 166 (211)
T cd03298 95 LSPGL--K-LTAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166 (211)
T ss_pred ccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 43211 1 12234567889999999987777654 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 167 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 167 MLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 99999999764 899999999975 467889999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=355.77 Aligned_cols=209 Identities=26% Similarity=0.367 Sum_probs=174.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~--~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... ++.+|+|.++|+++.. ..++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 458999999999999999999999999999999999864 2579999999998753 35678999999998888 5
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||+||+.++...+... .......++++++++.++|.+...... +..+++||||||||++|||||+.+|++++|||||+
T Consensus 94 tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 171 (246)
T PRK14269 94 SIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTS 171 (246)
T ss_pred cHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999875332100 012344556789999999953221111 12345899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|+++.+ |+|+|++||++. ++.+.+|++++|++|++++.|+++++.
T Consensus 172 ~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 172 ALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999865 899999999975 477899999999999999999988763
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=363.91 Aligned_cols=221 Identities=24% Similarity=0.406 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+.+. ...+.+|+|+||++++||+++|+||||||||||+|+|+|.+ +
T Consensus 6 ~l~i~nl~~~~~~~~----------------------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 62 (289)
T PRK13645 6 DIILDNVSYTYAKKT----------------------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-I 62 (289)
T ss_pred eEEEEEEEEEeCCCC----------------------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 489999999884210 00135999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCC---------hhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 149 DVKGNITYNDIPYN---------PALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 149 ~~~G~I~~~g~~~~---------~~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+.+|+|.++|.++. ..+++.++|++|++. +++ .||+||+.++.... ....++..++++++++.++
T Consensus 63 p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~ 138 (289)
T PRK13645 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQ 138 (289)
T ss_pred CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 56999999998763 134668999999973 455 59999999875322 1234444567888999999
Q ss_pred CC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCch
Q 044602 218 LE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSS 295 (674)
Q Consensus 218 L~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~ 295 (674)
|+ +..++.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.
T Consensus 139 L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~- 212 (289)
T PRK13645 139 LPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD- 212 (289)
T ss_pred CChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-
Confidence 95 5566554 489999999999999999999999999999999999999999999999764 899999999975
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 213 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 213 QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 478899999999999999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=360.15 Aligned_cols=219 Identities=24% Similarity=0.428 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|.. +
T Consensus 4 ~l~~~~l~~~~~~~------------------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~ 58 (277)
T PRK13642 4 ILEVENLVFKYEKE------------------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-E 58 (277)
T ss_pred eEEEEEEEEEcCCC------------------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-C
Confidence 48999999987421 1235899999999999999999999999999999999988 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+||++|++. .++..||.||+.++.... ...+++..++++++++.+||.+..+
T Consensus 59 ~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (277)
T PRK13642 59 EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKT 135 (277)
T ss_pred CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhh
Confidence 569999999998752 35678999999974 566679999998865422 2234455567899999999987777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||
T Consensus 136 ~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d 208 (277)
T PRK13642 136 REP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSD 208 (277)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCC
Confidence 654 589999999999999999999999999999999999999999999999875 9999999999865 4 4699
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 209 ~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 209 RILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=355.66 Aligned_cols=212 Identities=32% Similarity=0.512 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 54 (241)
T PRK14250 3 EIEFKEVSYSSF---------------------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-D 54 (241)
T ss_pred eEEEEeEEEEeC---------------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478999998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 223 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+||+ +..+
T Consensus 55 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~ 126 (241)
T PRK14250 55 PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYAT 126 (241)
T ss_pred CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhh
Confidence 569999999998742 35678999999998887 59999998754321 1 1234678899999996 4455
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||
T Consensus 127 ~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d 200 (241)
T PRK14250 127 RD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGD 200 (241)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCC
Confidence 54 4589999999999999999999999999999999999999999999999874 999999999976 4778999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 201 ~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 201 YTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999998763
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=353.52 Aligned_cols=204 Identities=31% Similarity=0.480 Sum_probs=179.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++.. ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 45999999999999999999999999999999999987 4569999999998753 34568999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.+....+ ........+.++++++.+++.+..++.+ +.|||||+||++|||+|+.+|++++|||||+|||+
T Consensus 92 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~ 163 (237)
T TIGR00968 92 NIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163 (237)
T ss_pred HHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875432 1233444567789999999987777654 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 164 ~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 164 KVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999998875 899999999975 478899999999999999999988774
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=351.35 Aligned_cols=204 Identities=30% Similarity=0.468 Sum_probs=179.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 469999999999999999999999999999999999874 468999999998753 23568999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.+....+ ........++++++++.+||.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+
T Consensus 92 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~ 163 (232)
T cd03300 92 NIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163 (232)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875433 1233444567889999999988777654 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 164 KLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999875 899999999975 477899999999999999999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=374.75 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=182.4
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE----eCC---h-h---cc-ccEEEEc
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI----PYN---P-A---LK-RRIGFVT 173 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~----~~~---~-~---~~-~~igyv~ 173 (674)
.+...+|+|+||++++||+++|+||||||||||+++|+|++ ++++|+|+++|+ ++. . . .| ++++||+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34567999999999999999999999999999999999987 456999999996 332 1 1 22 5799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC
Q 044602 174 QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS 253 (674)
Q Consensus 174 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ 253 (674)
|++.++|.+||+||+.++...+ ..++.+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986443 2345666678899999999988877765 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 254 LLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 254 illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999875 999999999975 578999999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=357.74 Aligned_cols=225 Identities=24% Similarity=0.401 Sum_probs=192.3
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-C
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-D 148 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~ 148 (674)
++++||+..+... .+..++++||||++++||++||+|.|||||||+.++|.|+++ +
T Consensus 2 L~v~nL~v~f~~~-----------------------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~ 58 (316)
T COG0444 2 LEVKNLSVSFPTD-----------------------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP 58 (316)
T ss_pred ceEeeeEEEEecC-----------------------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCC
Confidence 6789999888642 123569999999999999999999999999999999999986 3
Q ss_pred ---CCccEEEECCEeCC---h-h---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 044602 149 ---DVKGNITYNDIPYN---P-A---LK-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNM-NRQQKYARVQMILK 214 (674)
Q Consensus 149 ---~~~G~I~~~g~~~~---~-~---~~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~ 214 (674)
..+|+|.++|+++. + + +| +.|++||||+ .|-|.+||.+.+.-...... .. .+++..+++.++|+
T Consensus 59 ~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~ 136 (316)
T COG0444 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLE 136 (316)
T ss_pred CCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHH
Confidence 25799999999763 2 2 22 4799999996 68999999998887665431 22 45667889999999
Q ss_pred HcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCC
Q 044602 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQP 293 (674)
Q Consensus 215 ~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~ 293 (674)
.+||++-.. +-+.++++|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|+||||+
T Consensus 137 ~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 137 LVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred HcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999986421 33467899999999999999999999999999999999999999999999999997 599999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.++||||+||..|++|+.|+.+++.
T Consensus 215 ~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 215 G-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred H-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 6 588999999999999999999999874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=351.81 Aligned_cols=199 Identities=24% Similarity=0.430 Sum_probs=173.1
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 899999999999999999999999999999987 4569999999998753 2346799999999999999999999876
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
..... . ..+...++++++++.+||++..++.+ +.||||||||++||||++.+|++++|||||+|||+.++..
T Consensus 96 ~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~ 167 (232)
T PRK10771 96 LNPGL--K-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167 (232)
T ss_pred ccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 32111 1 12234567899999999988777765 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 168 ~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 168 MLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999998764 899999999975 477889999999999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=358.85 Aligned_cols=227 Identities=22% Similarity=0.397 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|...... -..+.+++|+|+|+++++||+++|+|||||||||||++|+|++ +
T Consensus 4 ~l~~~~l~~~~~~~~~~------------------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~ 64 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW------------------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-E 64 (267)
T ss_pred eEEEeceEEEecCCCCc------------------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-C
Confidence 48999999988521100 0011246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~ 221 (674)
+.+|+|.++|.++.. ..++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +.
T Consensus 65 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~ 142 (267)
T PRK15112 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDH 142 (267)
T ss_pred CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHH
Confidence 569999999998752 23457999999974 6788899999988654331 123444556788999999994 55
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+
T Consensus 143 ~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~ 216 (267)
T PRK15112 143 ASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHI 216 (267)
T ss_pred HhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHh
Confidence 55544 489999999999999999999999999999999999999999999999874 899999999975 57788
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 217 ~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 217 SDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred cCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=347.15 Aligned_cols=197 Identities=24% Similarity=0.427 Sum_probs=170.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++||+|++.+++.+|+.||+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence 467999999999999999999999999999999987 4569999999998753 3567899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+...... . ...+..++++++++.+||.+..++.+ ++||||||||++|||+|+.+|++++|||||+|||+.+
T Consensus 92 ~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 163 (213)
T TIGR01277 92 GLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163 (213)
T ss_pred HhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 87643211 1 12233556788999999987777654 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 269 ANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 269 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
+..+.+.|+++.++ |+|||++||++. ++.+.||++++|++|++++.|.
T Consensus 164 ~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 164 REEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 99999999999764 899999999975 4678899999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=356.01 Aligned_cols=222 Identities=25% Similarity=0.393 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|...
T Consensus 11 ~~l~i~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 11 EVYQINGMNLWYG---------------------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred ceEEEeeEEEEEC---------------------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3589999999773 2458999999999999999999999999999999999875
Q ss_pred C-C---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D-D---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~-~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ + ++|+|.++|+++.. ..++.+||++|++.+++. ||+||+.+..... ....+++..++++++++.++
T Consensus 64 ~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 140 (259)
T PRK14274 64 MVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVA 140 (259)
T ss_pred CCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcC
Confidence 2 2 58999999998741 346789999999988886 9999998875332 11133444567888999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+.+...... +..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+
T Consensus 141 l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~ 217 (259)
T PRK14274 141 LWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QA 217 (259)
T ss_pred Cchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HH
Confidence 854211111 123458999999999999999999999999999999999999999999999965 799999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||++++|++|+++..|+++++.
T Consensus 218 ~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 218 ARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998763
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=354.39 Aligned_cols=221 Identities=25% Similarity=0.405 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++
T Consensus 4 ~l~~~nl~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (252)
T PRK14256 4 KVKLEQLNVHFG---------------------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL 56 (252)
T ss_pred EEEEEEEEEEeC---------------------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 378999998774 2458999999999999999999999999999999999874
Q ss_pred -C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 -D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 -~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ +++|+|.++|+++.. .+++.++|++|++.+++.+||+||+.++.... ......+..++++++++.+++
T Consensus 57 ~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14256 57 VPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVAL 134 (252)
T ss_pred CCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 2 258999999998731 35678999999999999899999998764332 112333445678899999998
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...... +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 135 ~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~ 211 (252)
T PRK14256 135 WDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAA 211 (252)
T ss_pred chhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHH
Confidence 64221111 123458999999999999999999999999999999999999999999999976 689999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
++||++++|++|++++.|+++++
T Consensus 212 ~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 212 RVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred hhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999998876
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=359.06 Aligned_cols=220 Identities=24% Similarity=0.403 Sum_probs=184.3
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..+..++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|
T Consensus 9 ~~~~~l~i~nl~~~~~---------------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 9 SKNIIISLQNVTISYG---------------------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCCceEEEEeEEEEEC---------------------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999774 1458999999999999999999999999999999999
Q ss_pred CCCC----CCccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 145 RLTD----DVKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 145 ~~~~----~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
+.++ +++|+|.++|+++. ...++.++|++|++.+++. ||+||+.+.+..+ .... +..++++++++
T Consensus 62 l~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~ 136 (269)
T PRK14259 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLR 136 (269)
T ss_pred cccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHH
Confidence 8753 47999999999863 1356789999999998885 9999999876432 1122 23456778888
Q ss_pred HcCCCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 215 ELGLER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 215 ~lgL~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
.+++.. ..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++|
T Consensus 137 ~~~l~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivt 210 (269)
T PRK14259 137 KAAVWDECKDKLNES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVT 210 (269)
T ss_pred HhCCcchhhhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 888743 33433 458999999999999999999999999999999999999999999999965 79999999
Q ss_pred cCCchHHHhhcCEEEEEeC-----------CEEEEecChhHHHH
Q 044602 291 HQPSSRMFHMFDKLLLISE-----------GYPVYYGKARESME 323 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~-----------G~iv~~G~~~~~~~ 323 (674)
|++. ++.++||++++|++ |++++.|+++++.+
T Consensus 211 H~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 211 HNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred CCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 9975 57899999999996 67899999988743
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=351.06 Aligned_cols=202 Identities=30% Similarity=0.522 Sum_probs=178.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..++.++|++|++.+++.+|+.||+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 799999999999999999999999999999999987 4569999999998753 2356899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+..... .....+..+++.++++.+||.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.+
T Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 164 (235)
T cd03299 93 AYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164 (235)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHH
Confidence 8875332 2234455567889999999988777765 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 269 ANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 269 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+..+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|++++..
T Consensus 165 ~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 165 KEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999998765 999999999975 477889999999999999999987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=356.68 Aligned_cols=222 Identities=29% Similarity=0.374 Sum_probs=186.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+++
T Consensus 19 ~~l~~~nl~~~~~---------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 19 IALSTKDLHVYYG---------------------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred eEEEEeeEEEEEC---------------------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999773 2469999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....+.+..+++.++++.++
T Consensus 72 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 148 (267)
T PRK14237 72 TIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAA 148 (267)
T ss_pred ccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcC
Confidence 3 469999999998742 34678999999998888 49999999875332 11234445567888999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+..+... +..+++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++
T Consensus 149 l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~ 225 (267)
T PRK14237 149 LWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QA 225 (267)
T ss_pred CCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH
Confidence 864322211 234568999999999999999999999999999999999999999999999964 799999999976 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 226 ~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 226 ARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 7899999999999999999998763
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=366.72 Aligned_cols=224 Identities=22% Similarity=0.355 Sum_probs=188.3
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++|++++|.. +.+.+|+|+||+|++||++||+||||||||||+++|+|..
T Consensus 78 ~~~i~~~nls~~y~~-------------------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-------------------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CceEEEEeeEEEecC-------------------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346899999998842 1245899999999999999999999999999999999987
Q ss_pred CC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHH
Q 044602 147 TD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN-RQQKYARVQMILKE 215 (674)
Q Consensus 147 ~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~ 215 (674)
.. +.+|+|.+||+++.. .+++.++||+|++.+|+ .|++||+.|+.... ... ++...+.++++++.
T Consensus 133 ~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~ 208 (329)
T PRK14257 133 DLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKS 208 (329)
T ss_pred cccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHH
Confidence 42 458999999999852 45778999999999887 59999999875321 122 22234457888999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
++|.+..++.++ +.+..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|+|++||++.
T Consensus 209 ~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~- 285 (329)
T PRK14257 209 AALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA- 285 (329)
T ss_pred cCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-
Confidence 988655555554 34568999999999999999999999999999999999999999999999876 799999999975
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+.||||++|++|++++.|+++++.
T Consensus 286 ~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 286 QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 467789999999999999999999884
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=353.82 Aligned_cols=201 Identities=32% Similarity=0.458 Sum_probs=174.1
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEc-cCCCCCCC
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVT-QDDVLLPQ 181 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~-Q~~~l~~~ 181 (674)
++.+++|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|++... ..++.++|++ |++.+++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 455679999999999999999999999999999999999874 569999999987532 3567899998 55778888
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.+..... ....++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875432 12344455677889999999888887654 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999765 899999999975 577899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=372.38 Aligned_cols=193 Identities=29% Similarity=0.484 Sum_probs=173.3
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
|+||++++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++.. ..++.++||+|++.+|+++||+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 8999999999999999999999999999999874 569999999988642 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.|+.. ....++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|+|||||+|||
T Consensus 95 enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD 160 (352)
T PRK11144 95 GNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred HHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 99998642 122456889999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 161 ~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 161 LPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999875 899999999975 578999999999999999999999874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=380.41 Aligned_cols=215 Identities=30% Similarity=0.496 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+.+ ..++|+|+||++++||.+||+|+||||||||+++|+|-+ +
T Consensus 336 ~l~~~~vsF~y~~~-------------------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~ 389 (573)
T COG4987 336 ALELRNVSFTYPGQ-------------------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-D 389 (573)
T ss_pred eeeeccceeecCCC-------------------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-C
Confidence 68999999998742 246999999999999999999999999999999999877 5
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-----
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE----- 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----- 219 (674)
+.+|+|.+||.++.. .+++.+++++|...+|.+ |+++||.++... .+ ++.+.++++++||+
T Consensus 390 ~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~-----As----DEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD-----AS----DEELWAALQQVGLEKLLES 459 (573)
T ss_pred CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC-----CC----HHHHHHHHHHcCHHHHHHh
Confidence 569999999998752 478899999999999998 999999987421 22 34556667776653
Q ss_pred --ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 220 --RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 220 --~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+..||.+|+.+ +.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.++ |+|+|++||+...
T Consensus 460 ~p~gl~t~lge~G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~-- 535 (573)
T COG4987 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG-- 535 (573)
T ss_pred ChhhhhchhccCC-CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--
Confidence 46788898765 56999999999999999999999999999999999999999999988765 9999999999875
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||||++|++|+++++|++++++.
T Consensus 536 le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 536 LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 67899999999999999999999875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=353.77 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 3 ~~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 3 IKMESKNLNLWYG---------------------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cEEEEEEeEEEEC---------------------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3578999998763 2458999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|.++.. ..++.++|++|++.+++ +|++||+.+...... .....+..++++++++.++
T Consensus 56 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 132 (251)
T PRK14270 56 LISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAA 132 (251)
T ss_pred cccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcC
Confidence 3 268999999998742 34678999999999888 799999998754321 1123344567788999998
Q ss_pred CCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
|.+ ..++ .+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++
T Consensus 133 l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~ 206 (251)
T PRK14270 133 LWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM 206 (251)
T ss_pred CchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH
Confidence 853 2333 3458999999999999999999999999999999999999999999999976 69999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. ++.++||++++|++|++++.|+++++.
T Consensus 207 ~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 207 Q-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred H-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 5 578899999999999999999998863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=391.48 Aligned_cols=220 Identities=23% Similarity=0.384 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|+.++
T Consensus 5 ~l~~~nl~~~~~---------------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 5 LLEMKNITKTFG---------------------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eEEEeeeEEEeC---------------------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 489999998773 24599999999999999999999999999999999998854
Q ss_pred -CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 149 -DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 149 -~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
+++|+|.++|.++.. ..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..
T Consensus 58 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (506)
T PRK13549 58 GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP 137 (506)
T ss_pred CCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 479999999998742 13567999999999999999999999875322111123344456789999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.++ +||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||
T Consensus 138 ~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d 211 (506)
T PRK13549 138 ATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISD 211 (506)
T ss_pred ccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcC
Confidence 77654 89999999999999999999999999999999999999999999999878999999999975 4778899
Q ss_pred EEEEEeCCEEEEecChhHH
Q 044602 303 KLLLISEGYPVYYGKARES 321 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~ 321 (674)
++++|++|++++.|+++++
T Consensus 212 ~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 212 TICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEEEEECCEEeeecccccC
Confidence 9999999999999988765
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=343.90 Aligned_cols=194 Identities=37% Similarity=0.651 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.+.|+||+|.|+.++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++
T Consensus 3 ~~~~~~~~~~~~~~~-----------------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEG 59 (202)
T ss_pred eEEEEccEEEeccCC-----------------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCC
Confidence 478999999997431 235799999999999999999999999999999999998752
Q ss_pred --CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 --DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 --~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.... .+
T Consensus 60 ~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~ 113 (202)
T cd03233 60 NVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN 113 (202)
T ss_pred CCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc
Confidence 679999999998753 45678999999999999999999998763210 22
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+.||
T Consensus 114 ~~-----~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d 188 (202)
T cd03233 114 EF-----VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188 (202)
T ss_pred cc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCC
Confidence 22 3589999999999999999999999999999999999999999999999875 67877777765556888999
Q ss_pred EEEEEeCCEEEEec
Q 044602 303 KLLLISEGYPVYYG 316 (674)
Q Consensus 303 ~v~~L~~G~iv~~G 316 (674)
++++|++|++++.|
T Consensus 189 ~i~~l~~G~i~~~g 202 (202)
T cd03233 189 KVLVLYEGRQIYYG 202 (202)
T ss_pred eEEEEECCEEEecC
Confidence 99999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=354.24 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=187.0
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hc-cccEEEEccCCCCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~ 181 (674)
.-++|+|++++.||+..|||-||||||||+++|.++. ++++|+|+++|.++.. ++ |+++++|||...|+|+
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 3589999999999999999999999999999999766 5679999999998742 23 4579999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.||.||..|+...+ +++++++++++.+.|+.+||....+++ +++|||||||||.+||||+.+|+||++|||+
T Consensus 121 rtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 121 RTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 99999999998775 578999999999999999999988875 5699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|||--+.++.+.|.+|.++ ++|||++|||.. |..++.|||.+|++|++|..|+|+|++
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999998765 899999999975 689999999999999999999999986
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=352.41 Aligned_cols=219 Identities=28% Similarity=0.402 Sum_probs=183.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+.++++||+++|+ .+++|+|+||++++||+++|+||||||||||+|+|+|.++
T Consensus 3 ~~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 3 LLLSAQDVNIYYG---------------------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred EEEEEeeeEEEEC---------------------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578999998773 2458999999999999999999999999999999999875
Q ss_pred CC----CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 DD----VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~~----~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+. .+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.++.... ....+++..+.+++.++.++
T Consensus 56 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 133 (252)
T PRK14272 56 LTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAA 133 (252)
T ss_pred CCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcC
Confidence 42 38999999998742 34668999999999999999999998765322 11123334456777788777
Q ss_pred CC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+. +..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++
T Consensus 134 l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 207 (252)
T PRK14272 134 LWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM 207 (252)
T ss_pred cchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 64 233443 458999999999999999999999999999999999999999999999965 79999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.+.||++++|++|++++.|+++++.
T Consensus 208 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 208 H-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 6 477889999999999999999998874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=353.11 Aligned_cols=208 Identities=28% Similarity=0.419 Sum_probs=173.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--CCccEEEECCEeCCh------hccccEEEEccCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVL 178 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~--~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l 178 (674)
+++|+|+||++++||+++|+||||||||||+++|+|+.. + +.+|+|.++|+++.. ..++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 468999999999999999999999999999999999864 2 358999999988642 346789999999988
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
++. ||.||+.+....+. ......+..+.++++++.+||.+...+.+ +..+.+||||||||++|||+|+.+|++|+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 886 99999998743321 11123344456788999999965321111 1234589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999864 899999999976 47788999999999999999998876
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=372.64 Aligned_cols=197 Identities=26% Similarity=0.451 Sum_probs=175.3
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
|+||++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|+++.. ..++.++||+|++.+|+++||+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 9999999999999999999999999999999874 569999999998742 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.|+.... ...+..++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|+|||||+|||
T Consensus 94 enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD 163 (354)
T TIGR02142 94 GNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163 (354)
T ss_pred HHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 9999875421 22334567899999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++..+.+.|++++++ |+|+|++||++. ++..+||++++|++|+++..|+++++.
T Consensus 164 ~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 164 DPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999999875 899999999975 578899999999999999999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=351.74 Aligned_cols=221 Identities=24% Similarity=0.408 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+..+
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 3 IIEIENFSAYYG---------------------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred eEEEEeeEEEeC---------------------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 478999998763 24589999999999999999999999999999999998753
Q ss_pred ----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||+||+.++..... ...+...++.+++.++.+|+
T Consensus 56 ~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14262 56 IPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAAL 132 (250)
T ss_pred CCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCC
Confidence 368999999988642 34678999999999888 799999998754321 11233445567889999998
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+..+.. .+..+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+.
T Consensus 133 ~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~ 209 (250)
T PRK14262 133 WDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAI 209 (250)
T ss_pred CchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHH
Confidence 6421111 1233468999999999999999999999999999999999999999999999875 799999999976 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++||++++|++|+++..|+++++.
T Consensus 210 ~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 210 RIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HhCCEEEEEECCEEEEecCHHHHH
Confidence 899999999999999999998774
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=351.87 Aligned_cols=221 Identities=28% Similarity=0.419 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|...
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (252)
T PRK14239 5 ILQVSDLSVYYN---------------------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57 (252)
T ss_pred eEEEEeeEEEEC---------------------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc
Confidence 489999998773 2458999999999999999999999999999999999753
Q ss_pred CC---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DD---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
.+ .+|+|.++|+++.. .+++.++||+|++.+++ +||+||+.++..... ........++++++++.+++
T Consensus 58 ~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14239 58 NPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASI 134 (252)
T ss_pred CCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCC
Confidence 23 48999999998731 34678999999998888 799999998754321 11223345667889999987
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...+.. +..+++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 135 ~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~ 211 (252)
T PRK14239 135 WDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QAS 211 (252)
T ss_pred chhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHH
Confidence 53211111 123458999999999999999999999999999999999999999999999965 699999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.||++++|++|++++.|+++++.
T Consensus 212 ~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 212 RISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 899999999999999999998763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=355.08 Aligned_cols=199 Identities=29% Similarity=0.482 Sum_probs=163.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. .+++.++|++|++.+++ .||
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSI 92 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chH
Confidence 469999999999999999999999999999999999874 569999999998642 35678999999998876 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 185 EETLVFAAFLRLPGNMNRQQKY-----ARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.||+.+.... ....... ..+.+.++.+ ++.+..+. .+.+|||||||||+|||||+.+|++|+|
T Consensus 93 ~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llll 162 (237)
T cd03252 93 RDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILIF 162 (237)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999875311 1111111 1223445544 34433333 3468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 163 DEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999974 8999999999864 4 569999999999999999988764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=399.96 Aligned_cols=266 Identities=24% Similarity=0.393 Sum_probs=206.8
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hcc----------ccc-cccccCCCccc-c---CCCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSE-IDIVDESSSIE-K---DRPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~-~~~~~~~~~~~-~---~~~~~~~l~~~~ 74 (674)
..+|++.+.+|.++.|.++++..+... .+. ... .++.+.+++.. . ....+..++++|
T Consensus 239 l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~ 318 (569)
T PRK10789 239 IGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNI 318 (569)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEE
Confidence 456788889999999998887655321 000 000 02222211110 0 111123589999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
++|+|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|.+ ++.+|+|
T Consensus 319 v~~~y~~-------------------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i 372 (569)
T PRK10789 319 RQFTYPQ-------------------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDI 372 (569)
T ss_pred EEEECCC-------------------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEE
Confidence 9998852 1246899999999999999999999999999999999987 5569999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------CCCcccc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-------GLERCRH 223 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~ 223 (674)
.+||+++.+ .+++.++||+|++.+|++ |++||+.++.. ..+++ ++++.++.. .+++..|
T Consensus 373 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~ 442 (569)
T PRK10789 373 RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYD 442 (569)
T ss_pred EECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCccc
Confidence 999998753 578899999999999987 99999987631 12222 233334333 3467788
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+.+ ..||||||||++|||||+++|+|++|||||++||+.++..+.+.|+++. +|+|+|++||+++. .+.||+
T Consensus 443 t~~~~~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~ 518 (569)
T PRK10789 443 TEVGERG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASE 518 (569)
T ss_pred ceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCE
Confidence 9988654 5799999999999999999999999999999999999999999999985 58999999999864 567999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++++.+
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998853
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=350.91 Aligned_cols=217 Identities=25% Similarity=0.380 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ .+++|+|+||++++||+++|+||||||||||+++|+|...+
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14240 3 KISVKDLDLFYG---------------------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL 55 (250)
T ss_pred eEEEEEEEEEEC---------------------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 478999998773 24589999999999999999999999999999999997642
Q ss_pred -C---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 -D---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 -~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ .+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.++..... ....++..++++++++.+++
T Consensus 56 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14240 56 IPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAAL 132 (250)
T ss_pred cCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCC
Confidence 2 58999999998742 35678999999998888 799999998754321 11233455678888999887
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 133 ~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14240 133 WDEVKDRLKKS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred chhhHHHHhcC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH
Confidence 53 23433 458999999999999999999999999999999999999999999999964 899999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+.||++++|++|++++.|+++++.
T Consensus 207 -~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 207 -QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred -HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 578899999999999999999988763
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=357.43 Aligned_cols=208 Identities=26% Similarity=0.414 Sum_probs=174.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-------CccEEEECCEeCCh----hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-------VKGNITYNDIPYNP----ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-------~~G~I~~~g~~~~~----~~~~~igyv~Q~~~ 177 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.+++. .+|+|.++|.++.. ..++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999987543 28999999998742 34567999999987
Q ss_pred CCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-------
Q 044602 178 LLPQLTVEETLVFAAFLRL-PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL------- 249 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~------- 249 (674)
+++.+||+||+.++..... .......+..++++++++.+||.+..++.+ ..|||||||||+|||+|+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~ 168 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHD 168 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccc
Confidence 6666899999988632110 001111234456889999999987766654 489999999999999999
Q ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 250 --VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 250 --~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|+++++.
T Consensus 169 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 169 AAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred cCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 599999999999999999999999999999876 899999999975 477899999999999999999988763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=354.26 Aligned_cols=217 Identities=24% Similarity=0.376 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+..
T Consensus 21 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 73 (268)
T PRK14248 21 ILEVKDLSIYYG---------------------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL 73 (268)
T ss_pred eEEEEEEEEEeC---------------------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 589999999773 2459999999999999999999999999999999999753
Q ss_pred -C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 -D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 -~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.++..... ........+.+.+.++.+++
T Consensus 74 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 150 (268)
T PRK14248 74 IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAAL 150 (268)
T ss_pred cCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCC
Confidence 2 469999999998742 346789999999998886 99999998643221 11222334567788888888
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 151 ~~~~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 224 (268)
T PRK14248 151 WDEVKDRLHSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ 224 (268)
T ss_pred CcchHHHHhcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH
Confidence 52 23333 458999999999999999999999999999999999999999999999965 789999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 225 -~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 225 -QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=350.68 Aligned_cols=217 Identities=25% Similarity=0.411 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+|+|+|..++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14251 4 IISAKDVHLSYG---------------------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDD 56 (251)
T ss_pred eEEEEeeEEEEC---------------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccc
Confidence 489999999773 14589999999999999999999999999999999998752
Q ss_pred ----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....++...++++++++.+++
T Consensus 57 ~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 133 (251)
T PRK14251 57 IENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAI 133 (251)
T ss_pred ccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCC
Confidence 369999999998631 34678999999998887 69999998865322 111223344567889999998
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.. ..++. +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 134 ~~~~~~~~~~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 207 (251)
T PRK14251 134 WKETKDNLDRN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ 207 (251)
T ss_pred CcchHHHhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH
Confidence 52 23433 458999999999999999999999999999999999999999999999864 799999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+.||++++|++|+++..|+++++.
T Consensus 208 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 208 -QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred -HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 477889999999999999999988763
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=396.77 Aligned_cols=216 Identities=29% Similarity=0.448 Sum_probs=183.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|.+
T Consensus 336 ~~i~~~~v~f~y~~~------------------------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~- 390 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR------------------------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY- 390 (576)
T ss_pred ceEEEEEEEEECCCC------------------------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-
Confidence 358999999988521 1256999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||.++++ .+++.++|++|++.+|++ |++|||.++.. ..++ +++.+.++..|+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~ 460 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD----EEVEAAARAAHAHEFIS 460 (576)
T ss_pred CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHH
Confidence 4569999999998753 577899999999999998 99999988631 1222 334455555443
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..|+.+|+.+ ..||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++
T Consensus 461 ~l~~gl~t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~-- 536 (576)
T TIGR02204 461 ALPEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA-- 536 (576)
T ss_pred hCCCCCCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--
Confidence 456788888654 5799999999999999999999999999999999999999999999985 4899999999985
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
..+.+|+|++|++|++++.|+++++.
T Consensus 537 ~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 537 TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 36789999999999999999999874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=351.98 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|.+ +
T Consensus 6 ~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 57 (258)
T PRK11701 6 LLSVRGLTKLYG---------------------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-A 57 (258)
T ss_pred eEEEeeeEEEcC---------------------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 489999998763 145899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEe-----CCh----h----ccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIP-----YNP----A----LKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~-----~~~----~----~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 213 (674)
+.+|+|.++|++ +.. . .++.++|++|++ .+++.+|+.||+.+...... .....+..+++++++
T Consensus 58 p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l 135 (258)
T PRK11701 58 PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWL 135 (258)
T ss_pred CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHH
Confidence 569999999987 532 1 245799999997 46777899999976532211 112233456788999
Q ss_pred HHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 214 KELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 214 ~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
+.+++.+ ..++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||
T Consensus 136 ~~~~l~~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 136 ERVEIDAARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred HHcCCChhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 9999964 555544 589999999999999999999999999999999999999999999998765 899999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++. .+.+.||++++|++|++++.|+++++.
T Consensus 211 ~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 211 DLA-VARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred CHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 975 466789999999999999999988763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=349.73 Aligned_cols=201 Identities=28% Similarity=0.454 Sum_probs=172.7
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++... ....+|++|++.+++.+||.||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHH
Confidence 579999999999999999999999999999999874 5699999999987531 22358999999999999999999886
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
.....+ ...+.+..++++++++.+||.+..++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 79 VDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred HHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 421111 2334455567889999999988777765 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+..++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999775 899999999975 47889999999999999998866543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=352.97 Aligned_cols=222 Identities=27% Similarity=0.384 Sum_probs=184.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|++.
T Consensus 24 ~~l~~~nl~~~~~---------------------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 24 TALEVRNLNLFYG---------------------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred cEEEEEEEEEEEC---------------------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999773 1458999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|.++.. .+++.++|++|++.+++. ||+||+.+..... ....+....++++++++.++
T Consensus 77 ~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 153 (272)
T PRK14236 77 LVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAA 153 (272)
T ss_pred CccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcC
Confidence 3 469999999998742 356789999999999986 9999998875432 11123334466888999998
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+.+...+.. +..+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++
T Consensus 154 l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~ 230 (272)
T PRK14236 154 LWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QA 230 (272)
T ss_pred CChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HH
Confidence 864211111 123458999999999999999999999999999999999999999999999976 799999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||++++|++|++++.|+++++.
T Consensus 231 ~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 231 ARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HhhCCEEEEEECCEEEecCCHHHHh
Confidence 7899999999999999999988763
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=351.01 Aligned_cols=217 Identities=22% Similarity=0.360 Sum_probs=181.5
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..++++||+++|+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.
T Consensus 2 ~~~l~~~~l~~~~~----------------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 2 PQQIELRNIALQAA----------------------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CcEEEEeCeEEEec----------------------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999998661 35899999999999999999999999999999999987
Q ss_pred CC---CCccEEEECCEeCCh-h-ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 147 TD---DVKGNITYNDIPYNP-A-LKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 147 ~~---~~~G~I~~~g~~~~~-~-~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
++ +++|+|.++|+++.. . .++.++||+|++. +.+.+|+.+++.+.+... .... ..++++++++.++|.
T Consensus 54 ~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~ 128 (254)
T PRK10418 54 PAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLE 128 (254)
T ss_pred CCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCC
Confidence 54 169999999998753 2 2357999999974 456679999987654321 1112 235788999999997
Q ss_pred c---cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCch
Q 044602 220 R---CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSS 295 (674)
Q Consensus 220 ~---~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~ 295 (674)
+ ..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.
T Consensus 129 ~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~- 202 (254)
T PRK10418 129 NAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG- 202 (254)
T ss_pred ChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-
Confidence 6 34444 4589999999999999999999999999999999999999999999999764 899999999976
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 203 ~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 203 VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 467889999999999999999988763
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=349.47 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|..++
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 3 KFNIENLDLFYG---------------------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred eEEEeccEEEEC---------------------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 478899998763 24589999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 ----DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||.||+.++.... ....+....+++.+.++.+++.
T Consensus 56 ~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 132 (249)
T PRK14253 56 IEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALW 132 (249)
T ss_pred ccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCc
Confidence 358999999988731 35678999999999888 79999998875322 1112334456678888888875
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+...... +..+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+
T Consensus 133 ~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~ 209 (249)
T PRK14253 133 DEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARR 209 (249)
T ss_pred hhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHH
Confidence 4221111 123458999999999999999999999999999999999999999999999976 699999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q 044602 300 MFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.||++++|++|++++.|+++++
T Consensus 210 ~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 210 ISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998775
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=395.50 Aligned_cols=269 Identities=23% Similarity=0.352 Sum_probs=205.1
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hcc----------ccc-cccccCCCcc---cc---CCCCceeE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSE-IDIVDESSSI---EK---DRPLPIFL 70 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~-~~~~~~~~~~---~~---~~~~~~~l 70 (674)
-+..+|++.+.+|+.+.|.++++..+... .+. ... .++.+.+++. .. .......+
T Consensus 256 ~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i 335 (585)
T TIGR01192 256 CILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAV 335 (585)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeE
Confidence 34557888899999999998887644321 000 000 0222221110 00 01112359
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+++||+|+|+. .+++|+|+|+++++||.++|+||||||||||+++|+|.. ++.
T Consensus 336 ~~~~v~~~y~~--------------------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~ 388 (585)
T TIGR01192 336 EFRHITFEFAN--------------------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPT 388 (585)
T ss_pred EEEEEEEECCC--------------------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCC
Confidence 99999998742 135899999999999999999999999999999999987 556
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCcc
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV-----QMILKELGLERC 221 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~ 221 (674)
+|+|.+||.++.+ .+++.++||+|++.+|+. |++||+.++.. ..++++..+.. ++.+. .+++.
T Consensus 389 ~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~--~l~~g 460 (585)
T TIGR01192 389 VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEVYEAAKAAAAHDFIL--KRSNG 460 (585)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccc
Confidence 9999999998753 578899999999999986 99999988631 12332222211 12222 24566
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.|+.+|+. ...||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++. .+.|
T Consensus 461 ~~t~~~~~-~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~ 536 (585)
T TIGR01192 461 YDTLVGER-GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNA 536 (585)
T ss_pred ccchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcC
Confidence 78888764 45799999999999999999999999999999999999999999999885 48999999999854 4679
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+|++|++|++++.|+++++.+
T Consensus 537 d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 537 DLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999998854
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=386.07 Aligned_cols=219 Identities=24% Similarity=0.445 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. ++++|+|+||++++||+++|+||||||||||+|+|+|.++
T Consensus 4 ~i~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~- 55 (501)
T PRK10762 4 LLQLKGIDKAFP---------------------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT- 55 (501)
T ss_pred eEEEeeeEEEeC---------------------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 489999998773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
+.+|+|.++|.++.. . .++.++||+|++.+++.+||+||+.++...... .....++..++++++++.+||.+..
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 135 (501)
T PRK10762 56 RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS 135 (501)
T ss_pred CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc
Confidence 469999999998742 1 356799999999999999999999986432110 1123344456788999999998887
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||
T Consensus 136 ~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d 209 (501)
T PRK10762 136 DKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICD 209 (501)
T ss_pred cCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCC
Confidence 77654 89999999999999999999999999999999999999999999999877999999999975 5778999
Q ss_pred EEEEEeCCEEEEecChhHH
Q 044602 303 KLLLISEGYPVYYGKARES 321 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~ 321 (674)
++++|++|+++..|+++++
T Consensus 210 ~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 210 DVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEEEeCCEEEEecCcCcC
Confidence 9999999999999987654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=351.13 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+|+||||||||+|+|+|.+++
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 7 AIKVKDLSFYYN---------------------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred eEEEEEEEEEEC---------------------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 488999998773 14589999999999999999999999999999999998753
Q ss_pred --C--CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 --D--VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 --~--~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ ++|+|.++|+++.. .+++.++|++|++.+++ +||+||+.++...+. ...+.+..++++++++.+|+
T Consensus 60 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 136 (259)
T PRK14260 60 EGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAAL 136 (259)
T ss_pred ccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCC
Confidence 2 48999999998631 34668999999999888 799999988754321 12333445667888999988
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++ .+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 137 ~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 210 (259)
T PRK14260 137 WQEVKDKLNK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ 210 (259)
T ss_pred cchhhhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 43 3333 3468999999999999999999999999999999999999999999999875 699999999976
Q ss_pred hHHHhhcCEEEEEe-----CCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLIS-----EGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~-----~G~iv~~G~~~~~~ 322 (674)
++.++||++++|+ +|++++.|+++++.
T Consensus 211 -~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 211 -QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred -HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 5788999999998 59999999999873
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=331.42 Aligned_cols=205 Identities=27% Similarity=0.497 Sum_probs=176.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lT 183 (674)
.+++|++||++++|||++||+||||||||||||.|+|.+.+ .+|++.+||.+.+. ++.+.-+.++|+..+-...|
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 47799999999999999999999999999999999998844 59999999999863 46677899999976633359
Q ss_pred HHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh------CCCEE
Q 044602 184 VEETLVFAAFLRLPGNMNR--QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV------DPSLL 255 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~--~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~------~P~il 255 (674)
|.|-+.++.. |....+ .+..+.+++.|+..++.+.+.+.. ..|||||||||.+||.|+. ++++|
T Consensus 92 v~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 92 VQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred HHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 9999999853 332212 244556789999999988776643 4899999999999999986 34699
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 256 LLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 256 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||||+||...+..++++.++++++|..|+++.||.+- ...+||||++|++||++..|+|++++
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhc
Confidence 9999999999999999999999999999999999999874 67899999999999999999999875
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=353.32 Aligned_cols=221 Identities=24% Similarity=0.359 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++
T Consensus 21 ~l~i~nl~~~~~---------------------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 21 AMAAVNLTLGFA---------------------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred EEEEeeEEEEEC---------------------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 589999999874 24689999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 ----DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|.++.. .+++.++|++|++.+++ .||+||+.++.... ...+..+..+.+.++++.++|.
T Consensus 74 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~ 150 (276)
T PRK14271 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLW 150 (276)
T ss_pred CCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCC
Confidence 369999999988742 35678999999998888 69999998864322 1123444445678889999987
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..++.. +..+.+||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+
T Consensus 151 ~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~ 227 (276)
T PRK14271 151 DAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAAR 227 (276)
T ss_pred chhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHH
Confidence 5332211 123458999999999999999999999999999999999999999999999976 589999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||++++|++|++++.|+++++.
T Consensus 228 ~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 228 ISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999998874
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=352.67 Aligned_cols=218 Identities=25% Similarity=0.415 Sum_probs=181.5
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++|++++|+ .+.+|+|+|+++++||+++|+|+||||||||+++|+|.+
T Consensus 22 ~~~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 22 KVVFDTQNLNLWYG---------------------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred ceEEEEeeeEEEEC---------------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999774 145899999999999999999999999999999999987
Q ss_pred C--C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 147 T--D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 147 ~--~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
+ + +.+|+|.++|+++.. .+++.++|++|++.+++. ||+||+.++.... ....+...++.+.+.++.+
T Consensus 75 ~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~ 151 (271)
T PRK14238 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGA 151 (271)
T ss_pred cCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHc
Confidence 5 2 479999999998731 346789999999988885 9999999875432 1112223345567778777
Q ss_pred CCC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 217 GLE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 217 gL~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
++. +..++ .+.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+
T Consensus 152 ~~~~~l~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~ 225 (271)
T PRK14238 152 AIWDELKDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHN 225 (271)
T ss_pred CCcchHHHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 543 23333 3458999999999999999999999999999999999999999999999976 7999999999
Q ss_pred CchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 293 PSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 293 ~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+. .+.++||++++|++|++++.|+++++
T Consensus 226 ~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 226 MQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 75 47789999999999999999998876
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=349.98 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|..++
T Consensus 7 ~l~~~nl~~~~~---------------------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 7 AIKVNNLSFYYD---------------------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred eEEEeeEEEEeC---------------------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 489999999773 13589999999999999999999999999999999998754
Q ss_pred C----CccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 D----VKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~----~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
. .+|+|.++|+++. ...++.++|++|++.+++ +|+.||+.+...... .....+..+++.++++.+++
T Consensus 60 ~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 136 (261)
T PRK14258 60 ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADL 136 (261)
T ss_pred CCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCC
Confidence 2 3799999998863 134678999999988888 799999988753321 11233445678899999988
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i 297 (674)
.+..+... +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++
T Consensus 137 ~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i 214 (261)
T PRK14258 137 WDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QV 214 (261)
T ss_pred cchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH
Confidence 54322111 123458999999999999999999999999999999999999999999999875 4899999999975 57
Q ss_pred HhhcCEEEEEeC-----CEEEEecChhHHH
Q 044602 298 FHMFDKLLLISE-----GYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~-----G~iv~~G~~~~~~ 322 (674)
.++||++++|++ |++++.|+++++.
T Consensus 215 ~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 215 SRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 889999999999 9999999999874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=385.40 Aligned_cols=219 Identities=26% Similarity=0.467 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|..+
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~- 56 (510)
T PRK09700 5 YISMAGIGKSFG---------------------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE- 56 (510)
T ss_pred eEEEeeeEEEcC---------------------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-
Confidence 489999998763 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC-CCC---CCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL-PGN---MNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. ..++.++||+|++.+++.+||+||+.++..... ... ...++..++++++++.+||.
T Consensus 57 p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 136 (510)
T PRK09700 57 PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK 136 (510)
T ss_pred CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC
Confidence 569999999998742 134579999999999999999999987642110 001 12334456789999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..+++++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..
T Consensus 137 ~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~ 210 (510)
T PRK09700 137 VDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRR 210 (510)
T ss_pred CCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence 87777664 89999999999999999999999999999999999999999999999888999999999975 4778
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q 044602 300 MFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+||++++|++|++++.|+++++
T Consensus 211 ~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 211 ICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred hCCEEEEEECCEEeeecchhhC
Confidence 9999999999999999998765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=347.86 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 4 KIKIRGVNFFYH---------------------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred eEEEEEEEEEEC---------------------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 378999998763 24589999999999999999999999999999999998754
Q ss_pred C----CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 D----VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~----~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
. .+|+|.++|.++.. .+++.++|++|++.+++. ||+||+.+....+. ...+++..+.++++++.++|
T Consensus 57 ~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 133 (251)
T PRK14249 57 VSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAAL 133 (251)
T ss_pred cccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCC
Confidence 3 26999999988641 356789999999998886 99999998754321 11122334567778888887
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+..... .+..+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. .+.
T Consensus 134 ~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~ 210 (251)
T PRK14249 134 WDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAA 210 (251)
T ss_pred chhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHH
Confidence 5422111 123356899999999999999999999999999999999999999999999985 5899999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.||++++|++|++++.|+++++
T Consensus 211 ~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 211 RASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred hhCCEEEEEeCCeEEEeCCHHHH
Confidence 88999999999999999998876
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=322.55 Aligned_cols=196 Identities=32% Similarity=0.496 Sum_probs=174.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hcc-ccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALK-RRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~-~~igyv~Q~~~l~ 179 (674)
...||++|++.|++||.+||+|||||||||||-+++|+. .+++|+|.+.|+++.. .+| +++|+|||...+.
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 457999999999999999999999999999999999976 4569999999998752 233 5899999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
|+||..||+...+.++-. +..+....+.+.|+.+||.+..+.. |.+|||||+|||+||||++..|+|||.||
T Consensus 101 p~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 101 PNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred ccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 999999999998877631 3445566788999999999877764 56999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEE
Q 044602 260 PTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
||.+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999998876 4999999999985 567799999999999975
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=336.07 Aligned_cols=188 Identities=45% Similarity=0.803 Sum_probs=165.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++|+++.|+.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 3 ~l~~~~l~~~~~~~-----------------------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 59 (192)
T cd03232 3 VLTWKNLNYTVPVK-----------------------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA 59 (192)
T ss_pred EEEEeeeEEEecCC-----------------------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 47899999988521 012468999999999999999999999999999999999753
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++.+|+|.++|+++....++.++|++|++.+++.+||+||+.++... +
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------- 107 (192)
T cd03232 60 GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------- 107 (192)
T ss_pred CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------
Confidence 45799999999987655667899999999999999999999875310 0
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|
T Consensus 108 -----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 108 -----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred -----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 599999999999999999999999999999999999999999999998779999999999864467889999999
Q ss_pred eC-CEEEEec
Q 044602 308 SE-GYPVYYG 316 (674)
Q Consensus 308 ~~-G~iv~~G 316 (674)
++ |++++.|
T Consensus 183 ~~~g~i~~~g 192 (192)
T cd03232 183 KRGGKTVYFG 192 (192)
T ss_pred cCCCeEEeCC
Confidence 98 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=353.02 Aligned_cols=216 Identities=24% Similarity=0.389 Sum_probs=182.4
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|++
T Consensus 37 ~~~l~i~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 37 ETVIEARDLNVFYG---------------------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CceEEEEEEEEEEC---------------------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999773 145999999999999999999999999999999999987
Q ss_pred CC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 147 TD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 147 ~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
.+ +.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+
T Consensus 90 ~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~ 164 (285)
T PRK14254 90 DLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRA 164 (285)
T ss_pred CcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHc
Confidence 53 569999999988631 356789999999988886 99999998754321 122 3345788999999
Q ss_pred CCCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 217 GLER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 217 gL~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
||.+ ..++. +.+||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+
T Consensus 165 ~l~~~i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~ 238 (285)
T PRK14254 165 ALWDEVKDQLDSS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHN 238 (285)
T ss_pred CCCchhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 9853 33443 458999999999999999999999999999999999999999999999976 4899999999
Q ss_pred CchHHHhhcCEEE-EEeCCEEEEecChhHH
Q 044602 293 PSSRMFHMFDKLL-LISEGYPVYYGKARES 321 (674)
Q Consensus 293 ~~~~i~~~~D~v~-~L~~G~iv~~G~~~~~ 321 (674)
+. .+.++|||++ +|++|++++.|+++++
T Consensus 239 ~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 239 MQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 75 5778899975 6799999999998876
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=353.07 Aligned_cols=218 Identities=22% Similarity=0.347 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 38 ~~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 38 PHVVAKNFSIYYG---------------------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred eEEEEeeeEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3589999998773 1358999999999999999999999999999999999753
Q ss_pred --C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 --D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 --~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.++..... ..+.....+++.++++.+|
T Consensus 91 ~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 167 (286)
T PRK14275 91 LIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAA 167 (286)
T ss_pred cCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhC
Confidence 3 379999999988632 246789999999988886 99999998754321 1122334456788899888
Q ss_pred CC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+. +..++. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++
T Consensus 168 l~~~l~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~ 241 (286)
T PRK14275 168 LWDEVSDRLDKN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM 241 (286)
T ss_pred CccchhhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 74 333443 458999999999999999999999999999999999999999999999875 68999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. ++.++||++++|++|+++..|+++++.
T Consensus 242 ~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 242 Q-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 467899999999999999999988763
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=349.17 Aligned_cols=200 Identities=32% Similarity=0.477 Sum_probs=165.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++.. ..++.++|++|++.+++ .||
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 368999999999999999999999999999999999874 569999999988642 35678999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 185 EETLVFAAFLRLPGNMNRQQKY-----ARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||+.+.... ....+.. ..+++.++.+ ++.+..+.. +..||||||||++|||||+.+|++++|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 1111111 1235556655 455444443 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||+|||+.++..+.+.|+++++ |+|||++||++.. +. .||++++|++|++++.|+++++.+
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999964 8999999999864 54 499999999999999999887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=346.68 Aligned_cols=218 Identities=25% Similarity=0.374 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 4 ~~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 4 KIITSSDVHLFYG---------------------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred ceEEEEeEEEEEC---------------------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4589999999773 2458999999999999999999999999999999999763
Q ss_pred -CC---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 -DD---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 -~~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
.+ .+|+|.++|+++.. ..++.++|++|++.+++ .||.||+.+....+. ...++...+++.+.++.++
T Consensus 57 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 133 (252)
T PRK14255 57 LIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAA 133 (252)
T ss_pred cCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence 12 48999999998731 34678999999998888 599999998754321 1122223445677888887
Q ss_pred CCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.. ..++ .+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||++
T Consensus 134 l~~~i~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~ 207 (252)
T PRK14255 134 IWDEVKDHLHE-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM 207 (252)
T ss_pred CccchhhHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH
Confidence 642 2333 3458999999999999999999999999999999999999999999999976 58999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.+.||++++|++|+++..|++.+..
T Consensus 208 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 208 H-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 5 477899999999999999999988763
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=367.12 Aligned_cols=280 Identities=27% Similarity=0.391 Sum_probs=216.9
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh------------------hcccccc-ccccCCCcccc--C-CCCceeEEEE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL------------------RNRYSEI-DIVDESSSIEK--D-RPLPIFLKFE 73 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~--~-~~~~~~l~~~ 73 (674)
-.+..|++++.+|+.|.|.+++-=....+ +.-+..+ ++....+.... . ..+...+.++
T Consensus 259 ~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve 338 (580)
T COG4618 259 AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVE 338 (580)
T ss_pred HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEe
Confidence 46788999999999999987763211100 0000000 11111111111 1 1223468999
Q ss_pred eEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE
Q 044602 74 DVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153 (674)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~ 153 (674)
++++.-+ ...+++|+|+||++.+||.++|+||||||||||.|+|.|.. ++.+|.
T Consensus 339 ~l~~~PP-------------------------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~ 392 (580)
T COG4618 339 RLTAAPP-------------------------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGS 392 (580)
T ss_pred eeeecCC-------------------------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCc
Confidence 9998221 23478999999999999999999999999999999999977 557999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 044602 154 ITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229 (674)
Q Consensus 154 I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 229 (674)
|++||.+++. .+-++|||.|||-.||++ ||.|||.=......+..+-++.+.+.++|++- .|++.+||.||+.
T Consensus 393 VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~ 469 (580)
T COG4618 393 VRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEG 469 (580)
T ss_pred EEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCC
Confidence 9999998864 467899999999999999 99999963211111111122333445677764 4599999999976
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+ ..||||||||+++||||..||.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++
T Consensus 470 G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~ 546 (580)
T COG4618 470 G-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD 546 (580)
T ss_pred C-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC
Confidence 6 479999999999999999999999999999999999999999999999999999999999996 5788999999999
Q ss_pred CEEEEecChhHHHHHHHh
Q 044602 310 GYPVYYGKARESMEYFSS 327 (674)
Q Consensus 310 G~iv~~G~~~~~~~~f~~ 327 (674)
|++-.+|+.+|++.....
T Consensus 547 G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 547 GRIAAFGPREEVLAKVLR 564 (580)
T ss_pred ChHHhcCCHHHHHHHhcC
Confidence 999999999999877643
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=341.91 Aligned_cols=190 Identities=31% Similarity=0.475 Sum_probs=166.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
|+|+++++ |+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+|+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 99999999 9999999999999999999999874 569999999988631 2456899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+..... ......++++++++.+|+.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||
T Consensus 94 ~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 163 (214)
T cd03297 94 ENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163 (214)
T ss_pred HHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998865321 23334567889999999987666654 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 164 RALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999875 899999999975 467899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=347.35 Aligned_cols=221 Identities=28% Similarity=0.380 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|...+
T Consensus 6 ~i~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 58 (253)
T PRK14261 6 ILSTKNLNLWYG---------------------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58 (253)
T ss_pred eEEEeeeEEEEC---------------------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC
Confidence 589999998773 24589999999999999999999999999999999997642
Q ss_pred -C---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 -D---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 -~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ .+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.++...+. .....+.++.+.++++.+++
T Consensus 59 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 135 (253)
T PRK14261 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAAL 135 (253)
T ss_pred CCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcC
Confidence 2 48999999998642 345679999999998885 99999998754331 11233445667888998887
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...+.. +..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 136 ~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~ 212 (253)
T PRK14261 136 WDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAA 212 (253)
T ss_pred chhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHH
Confidence 53221111 123458999999999999999999999999999999999999999999999976 699999999975 467
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.||++++|++|+++..|+++++.
T Consensus 213 ~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 213 RVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred hhCCEEEEEECCEEEEcCCHHHHH
Confidence 899999999999999999988763
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=341.35 Aligned_cols=210 Identities=30% Similarity=0.495 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++
T Consensus 2 l~~~~l~~~~~~~-----------------------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~ 57 (220)
T TIGR02982 2 ISIRNLNHYYGHG-----------------------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SV 57 (220)
T ss_pred EEEEEEEEEccCC-----------------------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 6789999877421 11256999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.++..... ....++..++++++++.+||.+..
T Consensus 58 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~ 135 (220)
T TIGR02982 58 QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHL 135 (220)
T ss_pred CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhh
Confidence 69999999998742 246789999999999998999999998754321 133455566789999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++||++. ..+.|
T Consensus 136 ~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~ 208 (220)
T TIGR02982 136 DYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVA 208 (220)
T ss_pred hcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhC
Confidence 7654 58999999999999999999999999999999999999999999999986 4899999999975 45899
Q ss_pred CEEEEEeCCEE
Q 044602 302 DKLLLISEGYP 312 (674)
Q Consensus 302 D~v~~L~~G~i 312 (674)
|++++|++|++
T Consensus 209 d~v~~l~~g~~ 219 (220)
T TIGR02982 209 DRIVHMEDGKL 219 (220)
T ss_pred CEEEEEECCEE
Confidence 99999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=344.92 Aligned_cols=203 Identities=25% Similarity=0.395 Sum_probs=173.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCccEEEECCEeCCh-hc-cccEEEEccCCC--CCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD---DVKGNITYNDIPYNP-AL-KRRIGFVTQDDV--LLPQLT 183 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~---~~~G~I~~~g~~~~~-~~-~~~igyv~Q~~~--l~~~lT 183 (674)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++.. .. ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 58999999999999999999999999999999998854 169999999998754 23 357999999974 567789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER---CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
+.||+.+..... .....+..++++++++.++|++ ..++.+ ..|||||||||+|||||+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765322 1122344567899999999973 345443 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 261 TSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++..++|++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 899999999976 577899999999999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=371.93 Aligned_cols=226 Identities=25% Similarity=0.416 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+.+|... .+...+++||||++++||++||+|.|||||||+.++|.|+++.
T Consensus 5 lL~V~nL~v~~~~~-----------------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 5 LLEVENLTVEFATD-----------------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred eEEEeceEEEEecC-----------------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 58999999988642 1124699999999999999999999999999999999999864
Q ss_pred C---CccEEEECCEeCCh-------h-ccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 149 D---VKGNITYNDIPYNP-------A-LKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 149 ~---~~G~I~~~g~~~~~-------~-~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
. .+|+|.++|+++.. . ..+.|+||||++ .+-|-+||.+.+.-....+. ..++++.++++.++|+.
T Consensus 62 ~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~ 139 (539)
T COG1123 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQ 139 (539)
T ss_pred CCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 3 48999999997631 1 235799999996 46676899998887665543 23478888999999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 294 (674)
+||++.... +.++++|||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+.
T Consensus 140 Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 140 VGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred cCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 999986654 568999999999999999999999999999999999999999999999999986 4999999999985
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.++||||+||++|++|+.|+++++++
T Consensus 217 -Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 217 -VVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred -HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 5889999999999999999999999975
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=382.32 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++
T Consensus 11 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~- 62 (510)
T PRK15439 11 LLCARSISKQYS---------------------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP- 62 (510)
T ss_pred eEEEEeEEEEeC---------------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999999773 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. . .++.+|||+|++.+++.+||.||+.++... ..+..++++++++.+||.+..+
T Consensus 63 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~ 135 (510)
T PRK15439 63 PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLD 135 (510)
T ss_pred CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCcccc
Confidence 569999999998742 1 235699999999999999999999886311 1234467889999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 136 ~~~~-----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~ 209 (510)
T PRK15439 136 SSAG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADR 209 (510)
T ss_pred CChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 7654 89999999999999999999999999999999999999999999999888999999999975 47789999
Q ss_pred EEEEeCCEEEEecChhHH
Q 044602 304 LLLISEGYPVYYGKARES 321 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~ 321 (674)
+++|++|++++.|++++.
T Consensus 210 i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 210 ISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEECCEEEEecChHHc
Confidence 999999999999998775
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=350.96 Aligned_cols=227 Identities=24% Similarity=0.402 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+..... + ...++.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~nl~~~~~~~~~~-----------------~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 63 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLS-----------------G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-S 63 (268)
T ss_pred eEEEeceEEEecCCccc-----------------c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 47899999988521000 0 011356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. ..++.++|++|++ .+++..|+.||+.+..... ......+..++++++++.+|+.
T Consensus 64 p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~ 141 (268)
T PRK10419 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLD 141 (268)
T ss_pred CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCC
Confidence 569999999998642 2467899999997 4667789999997754211 1223445556789999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+
T Consensus 142 ~~~~~~~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i 215 (268)
T PRK10419 142 DSVLDKRP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LV 215 (268)
T ss_pred hhHhhCCC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HH
Confidence 4556544 589999999999999999999999999999999999999999999999875 899999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 216 ERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHhCCEEEEEECCEEeeeCChhhcc
Confidence 7899999999999999999998864
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=324.59 Aligned_cols=208 Identities=25% Similarity=0.435 Sum_probs=184.3
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-----------------hhcccc
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----------------PALKRR 168 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-----------------~~~~~~ 168 (674)
++...+||+||++.++|+++.|+|.|||||||+|+||. .+..|..|.|.+||+++. +.+|.+
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 35577999999999999999999999999999999999 455667999999998752 135668
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 169 igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
.|+|+|+..|++++||.||+.-+-.-- -..++.+..++++.+|.++||.+..|.. +..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHHH
Confidence 999999999999999999987542211 1357888889999999999999888754 558999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+|++|++|.|-+.|+|+++.
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeecceecccCChHHHh
Confidence 99999999999999999999999999999999999999999999764 67789999999999999999999873
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=347.77 Aligned_cols=206 Identities=23% Similarity=0.344 Sum_probs=174.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CCccEEEECCEeCCh------hccccEEEEccCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVL 178 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l 178 (674)
+.+|+|+||++++||+++|+|+||||||||+|+|+|++.+ +.+|+|.++|+++.. .+++.++|++|++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 5699999999999999999999999999999999998854 368999999998742 346789999999988
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
++ +|+.||+.++..... . ..+..++++++++.++|.+..+.... ..++.||||||||++|||||+.+|++|+||
T Consensus 101 ~~-~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllD 174 (261)
T PRK14263 101 FS-MSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLD 174 (261)
T ss_pred cc-ccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 84 899999998764321 1 22334678899999998653322221 245689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe--------CCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS--------EGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|+++++ ++|+|++||++. ++.++||++++|+ +|++++.|+++++.
T Consensus 175 EPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 175 EPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999999999999999999964 799999999976 4778999999996 89999999998764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=391.92 Aligned_cols=235 Identities=28% Similarity=0.428 Sum_probs=182.4
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcc---c---c--CCCCce
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSI---E---K--DRPLPI 68 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~---~---~--~~~~~~ 68 (674)
..+|++.+.+|..+.|.++.++.+... .++. .++.+.+++. . . ....+.
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri--~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERI--EEVTGAKGPRPEGVVPAAGALGLGKP 333 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCcCCCCCCCCcccCCCCc
Confidence 356778888999999988887654321 0000 0222211110 0 0 011234
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++|+||+|+|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|.+ +
T Consensus 334 ~I~~~~vsf~Y~~--------------------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~ 386 (529)
T TIGR02868 334 TLELRDLSFGYPG--------------------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-D 386 (529)
T ss_pred eEEEEEEEEecCC--------------------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 6999999998852 135999999999999999999999999999999999977 5
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------C
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------L 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 218 (674)
+.+|+|.+||+++++ ++|++++||+|++.+|++ |++|||.++.. +.++ ++++++++..+ |
T Consensus 387 p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~l 456 (529)
T TIGR02868 387 PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSL 456 (529)
T ss_pred CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhC
Confidence 569999999998763 578899999999999998 99999998631 1222 23444444433 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
++..||.+|+.+ ..||||||||++|||||+++|+||+||||||+||++++..+.+.|+++. +++|+|+++|++
T Consensus 457 p~GldT~ige~G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 457 PDGLDTVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cccccchhcccc-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 678899999766 4699999999999999999999999999999999999999999999874 489999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=345.03 Aligned_cols=221 Identities=27% Similarity=0.372 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-C
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-T 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~ 147 (674)
.++++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+. .
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 59 (252)
T CHL00131 7 ILEIKNLHASVN---------------------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY 59 (252)
T ss_pred eEEEEeEEEEeC---------------------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 589999998763 145899999999999999999999999999999999973 2
Q ss_pred CCCccEEEECCEeCCh----hccc-cEEEEccCCCCCCCCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKR-RIGFVTQDDVLLPQLTVEETLVFAAFLRLP----GNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~-~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL 218 (674)
++.+|+|.++|.++.. ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 139 (252)
T CHL00131 60 KILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM 139 (252)
T ss_pred cCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCC
Confidence 4579999999998743 2222 488999999999999999999876432110 011222334577889999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
. +..++.++ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. +
T Consensus 140 ~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~ 214 (252)
T CHL00131 140 DPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-L 214 (252)
T ss_pred chhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H
Confidence 7 35555442 2599999999999999999999999999999999999999999999998779999999999754 4
Q ss_pred Hhh-cCEEEEEeCCEEEEecChhHH
Q 044602 298 FHM-FDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 298 ~~~-~D~v~~L~~G~iv~~G~~~~~ 321 (674)
... +|++++|++|++++.|+++.+
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 215 DYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HhhhCCEEEEEeCCEEEEecChhhh
Confidence 555 899999999999999999844
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=362.80 Aligned_cols=223 Identities=30% Similarity=0.449 Sum_probs=191.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..+.|.||+|.|. ..+++|+|+||++++|+.+|++||||+||||++++|-..+
T Consensus 260 ~g~v~F~~V~F~y~--------------------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 260 LGAVAFINVSFAYD--------------------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred cceEEEEEEEeecc--------------------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 34589999999885 2477999999999999999999999999999999999554
Q ss_pred CCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 147 TDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
...+|.|.+||+++.. .+|+-||.||||..||++ |+..|+.|+.......++....+.....+.++.+ ++.+
T Consensus 314 -D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy 389 (497)
T COG5265 314 -DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGY 389 (497)
T ss_pred -CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhh
Confidence 6679999999999863 689999999999999998 9999999984322211122222334455666655 9999
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.||+++.+ |||||||||+|||+++.+|+||+|||.||+||..++++|+..|++.+ .|+|.+++.|++++ .--+|
T Consensus 390 ~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~ad 465 (497)
T COG5265 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDAD 465 (497)
T ss_pred hcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCc
Confidence 9999998875 99999999999999999999999999999999999999999999987 59999999999987 44589
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.|++|++|+|++.|+|+++++
T Consensus 466 eiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 466 EIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred eEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999975
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.88 Aligned_cols=201 Identities=29% Similarity=0.455 Sum_probs=162.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .||
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTI 93 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhH
Confidence 46999999999999999999999999999999999987 4569999999988642 34567999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYA-----RVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||+.+....+ ..++..+ .+.+.++.+ ++....++ .+++||||||||++|||+|+.+|++|+|
T Consensus 94 ~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llll 163 (238)
T cd03249 94 AENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQKQRIAIARALLRNPKILLL 163 (238)
T ss_pred HHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998753211 1111111 122233333 33333333 3468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 324 (674)
||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.|+.+++.+.
T Consensus 164 DEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 164 DEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999987 79999999999764 4 48999999999999999998877554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=338.63 Aligned_cols=188 Identities=29% Similarity=0.502 Sum_probs=164.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC---h-----hccccEEEEccCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---P-----ALKRRIGFVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~---~-----~~~~~igyv~Q~~~l~~ 180 (674)
+++|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++. . ..++.++|++|++.+++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 46999999999999999999999999999999999987 456999999999853 1 24568999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.+|++||+.+..... ...+.+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+||||
T Consensus 90 ~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 90 NETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 899999999875432 2234455667899999999988777765 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
|+|||+.++..+.+.|+++.++|+|+|++||++. ..+.||++++|
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999877999999999985 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=371.36 Aligned_cols=231 Identities=26% Similarity=0.413 Sum_probs=194.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+..|..++.. + .-..+...+++||||++++||++||+|+||||||||.|+|+|+.+
T Consensus 279 ~ll~V~~l~k~y~~~~~~------------~----~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGL------------F----VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred ceeEeeeeeeeecccccc------------c----cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 458899999999753210 0 000233568999999999999999999999999999999999885
Q ss_pred CCCccEEEECCEeCC------hhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 148 DDVKGNITYNDIPYN------PALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~------~~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
| .+|+|.++|.+.+ ...++++-+||||+ .|.|.+||+++|.-....... ...++.++++.++++.+||+
T Consensus 343 P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 343 P-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLP 419 (539)
T ss_pred C-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCC
Confidence 5 7999999998732 13567899999986 589999999999987654432 23566777899999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
.. ..++++++||||||||++|||||+.+|++|++|||||.||+..+..++++|+++.++ |.|.|+||||.. .+.
T Consensus 420 ~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~ 494 (539)
T COG1123 420 PE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVR 494 (539)
T ss_pred HH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHH
Confidence 42 334567899999999999999999999999999999999999999999999999876 999999999975 588
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++||||++|++|++|+.|+.+++.
T Consensus 495 ~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 495 YIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred hhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999888774
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=348.86 Aligned_cols=219 Identities=24% Similarity=0.322 Sum_probs=182.5
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+.+..++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|
T Consensus 16 ~~~~~l~~~nl~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 16 PDHSVFEVEGVKVFYG---------------------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCceEEEeeEEEEeC---------------------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455799999999763 2458999999999999999999999999999999999
Q ss_pred CCCC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 145 RLTD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 145 ~~~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
+..+ +.+|+|.++|+++.. .+++.++|++|++.+++. ||.||+.++...+. .. ....+.+++.++
T Consensus 69 l~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~ 143 (274)
T PRK14265 69 MNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLR 143 (274)
T ss_pred ccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHH
Confidence 8742 258999999998731 346789999999988875 99999988753321 11 122345677788
Q ss_pred HcCCCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 215 ELGLER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 215 ~lgL~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
.+++.+ ..++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++
T Consensus 144 ~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~s 217 (274)
T PRK14265 144 RAAIWEEVKDKLKE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVT 217 (274)
T ss_pred HcccchhhHHHhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 888742 2333 3458999999999999999999999999999999999999999999999975 79999999
Q ss_pred cCCchHHHhhcCEEEEEe---------CCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLIS---------EGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 322 (674)
|++. .+.++||++++|+ +|++++.|+++++.
T Consensus 218 H~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 218 HNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9975 4788999999998 89999999998874
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=345.63 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 54 (253)
T TIGR02323 3 LLQVSGLSKSYG---------------------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-A 54 (253)
T ss_pred eEEEeeeEEEeC---------------------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 488999998774 135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEe-----CCh----h----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIP-----YNP----A----LKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~-----~~~----~----~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 213 (674)
+.+|+|.++|++ +.. . .++.++|++|++. +++.+|+.||+.+..... . .....+..+++++++
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l 132 (253)
T TIGR02323 55 PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWL 132 (253)
T ss_pred CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHH
Confidence 569999999976 431 1 2357999999974 456679999997643211 1 011223446788999
Q ss_pred HHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 214 KELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 214 ~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
+.+|+. +..++.+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|
T Consensus 133 ~~l~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 133 EEVEIDPTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred HHcCCChhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 999996 3556554 589999999999999999999999999999999999999999999998764 899999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++. .+...||++++|++|++++.|+++++.
T Consensus 208 ~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 208 DLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 975 467789999999999999999988663
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=345.34 Aligned_cols=214 Identities=33% Similarity=0.469 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+. +
T Consensus 2 ~l~~~~l~~~~~~--------------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~ 54 (229)
T cd03254 2 EIEFENVNFSYDE--------------------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-D 54 (229)
T ss_pred eEEEEEEEEecCC--------------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-C
Confidence 3789999987631 135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc--
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-- 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-- 222 (674)
+.+|+|.++|.++.. .+++.++|++|++.+++. ||.||+.+.... ... .++++.++.+++.+..
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~ 124 (229)
T cd03254 55 PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMK 124 (229)
T ss_pred CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHh
Confidence 569999999988642 456789999999988886 999999875321 111 1233333333332211
Q ss_pred -----cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 223 -----HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 223 -----~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++.. +..+++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++.. +
T Consensus 125 ~~~~~~~~~-~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~ 201 (229)
T cd03254 125 LPNGYDTVL-GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I 201 (229)
T ss_pred CcccccCHh-hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H
Confidence 1111 12346899999999999999999999999999999999999999999999986 48999999999864 4
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||++++|++|++++.|+.++..+
T Consensus 202 -~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 202 -KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred -hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 4699999999999999998876643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=344.13 Aligned_cols=221 Identities=23% Similarity=0.378 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 3 ~l~~~~v~~~~~---------------------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (250)
T PRK14266 3 RIEVENLNTYFD---------------------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDL 55 (250)
T ss_pred EEEEEeEEEEeC---------------------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 478899988763 2458999999999999999999999999999999999753
Q ss_pred -C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 -D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 -~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ +.+|+|.+||+++.. ..++.++|++|++.+++. |+.||+.++.... ....++...+++.++++.+||
T Consensus 56 ~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14266 56 IPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAAL 132 (250)
T ss_pred CCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 2 368999999998642 356789999999998986 9999998864322 111233445678899999998
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...... +..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 133 ~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~ 209 (250)
T PRK14266 133 WDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QAT 209 (250)
T ss_pred chhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHH
Confidence 54321111 233458999999999999999999999999999999999999999999999965 899999999975 578
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+|++++|++|++++.|+++++.
T Consensus 210 ~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 210 RVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred hhcCEEEEEECCeEEEeCCHHHHH
Confidence 899999999999999999998763
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=331.92 Aligned_cols=191 Identities=51% Similarity=0.876 Sum_probs=165.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+.++++||+++|+.... ...+++|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 2 ~~l~~~~ls~~~~~~~~---------------------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~ 60 (194)
T cd03213 2 VTLSFRNLTVTVKSSPS---------------------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60 (194)
T ss_pred cEEEEEeeEEEEecCCC---------------------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999998852100 012569999999999999999999999999999999999871
Q ss_pred -CCCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 -DDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 -~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+|++||+.+.....
T Consensus 61 ~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------ 110 (194)
T cd03213 61 GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------ 110 (194)
T ss_pred CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------
Confidence 4469999999998864 45678999999999999999999998652100
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||+++
T Consensus 111 -------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 111 -------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred -------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEE
Confidence 5999999999999999999999999999999999999999999999987799999999998656778999999
Q ss_pred EEeCCEEEEec
Q 044602 306 LISEGYPVYYG 316 (674)
Q Consensus 306 ~L~~G~iv~~G 316 (674)
+|++|++++.|
T Consensus 184 ~l~~G~i~~~~ 194 (194)
T cd03213 184 LLSQGRVIYFG 194 (194)
T ss_pred EEeCCEEEecC
Confidence 99999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=352.35 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++
T Consensus 2 ~i~~~nls~~~~~-------------------------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~- 55 (275)
T cd03289 2 QMTVKDLTAKYTE-------------------------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 55 (275)
T ss_pred eEEEEEEEEEeCC-------------------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 3789999998852 12458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc--
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-- 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-- 222 (674)
.+|+|+++|.++.. .+++.++||+|++.+|+. ||+||+.... .... +++.+.++.+||.+..
T Consensus 56 -~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~ 123 (275)
T cd03289 56 -TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQ 123 (275)
T ss_pred -CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHh
Confidence 58999999998742 467889999999999986 9999996421 1122 3456777888876543
Q ss_pred -----cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 223 -----HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 223 -----~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++.+++ ....||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++. .+
T Consensus 124 ~p~~l~~~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i 200 (275)
T cd03289 124 FPGQLDFVLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM 200 (275)
T ss_pred CcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH
Confidence 444443 335699999999999999999999999999999999999999999999875 4899999999985 34
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||||++|++|++++.|+++++++
T Consensus 201 -~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 201 -LECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred -HhCCEEEEecCCeEeecCCHHHHhh
Confidence 4599999999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=379.67 Aligned_cols=207 Identities=27% Similarity=0.458 Sum_probs=177.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~l 182 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++.. ..++.+|||+|++.+++.+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 4599999999999999999999999999999999998754 369999999998753 1346799999999999999
Q ss_pred CHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 183 TVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
||.||+.++....... ....++..++++++++.+||.+.. ++.+ ++|||||||||+|||||+.+|++||||||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 9999998875322111 123344456788999999998654 3444 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 169 t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 169 SSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999888999999999975 57789999999999999999987643
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=349.86 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~~~~l~~~~~~--------------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 58 (272)
T PRK15056 6 GIVVNDVTVTWRN--------------------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR- 58 (272)
T ss_pred eEEEEeEEEEecC--------------------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 5899999987741 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCChhcc-ccEEEEccCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVKGNITYNDIPYNPALK-RRIGFVTQDDVLL--PQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~-~~igyv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+|+|.++|+++....+ +.++|++|++.+. ...+++||+.++...... .........++++++++.+||.+..++
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 138 (272)
T PRK15056 59 LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138 (272)
T ss_pred CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC
Confidence 569999999998754333 4699999997642 234789998764211000 001122334567889999999887777
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.++ +||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++
T Consensus 139 ~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v 212 (272)
T PRK15056 139 QIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYT 212 (272)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 654 89999999999999999999999999999999999999999999999877999999999975 477899999
Q ss_pred EEEeCCEEEEecChhHH
Q 044602 305 LLISEGYPVYYGKARES 321 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~ 321 (674)
+++ +|++++.|+++++
T Consensus 213 ~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 213 VMV-KGTVLASGPTETT 228 (272)
T ss_pred EEE-CCEEEeecCHHhc
Confidence 877 8999999998876
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=342.42 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ .+++|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 7 ~i~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 58 (225)
T PRK10247 7 LLQLQNVGYLAG---------------------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-S 58 (225)
T ss_pred eEEEeccEEeeC---------------------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-C
Confidence 589999998763 245999999999999999999999999999999999977 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 223 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++. ||+||+.+....+. .. ...++++++++.+|+. ...+
T Consensus 59 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~ 132 (225)
T PRK10247 59 PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILT 132 (225)
T ss_pred CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhc
Confidence 569999999988642 356789999999988875 99999988643321 11 1234678899999996 3556
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ +.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||
T Consensus 133 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d 205 (225)
T PRK10247 133 KNI-----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHAD 205 (225)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCC
Confidence 554 589999999999999999999999999999999999999999999998764 8999999999764 4 5699
Q ss_pred EEEEEe-CCEEEEecChh
Q 044602 303 KLLLIS-EGYPVYYGKAR 319 (674)
Q Consensus 303 ~v~~L~-~G~iv~~G~~~ 319 (674)
++++|+ ++..+.+|+++
T Consensus 206 ~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 206 KVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEEEecccchHhhhhhc
Confidence 999995 66667777664
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=347.48 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+|+++++||+++|+||||||||||+|+|+|+..+
T Consensus 10 ~l~i~~v~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 62 (264)
T PRK14243 10 VLRTENLNVYYG---------------------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL 62 (264)
T ss_pred EEEEeeeEEEEC---------------------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 589999998773 14589999999999999999999999999999999997642
Q ss_pred ----CCccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. ...++.++|++|++.+++. ||.||+.++.... ... .+..++++++++.+++
T Consensus 63 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l 137 (264)
T PRK14243 63 IPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAAL 137 (264)
T ss_pred cCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCc
Confidence 36899999998863 1346789999999988885 9999999875332 111 2234556777888887
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+..+... +..+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 138 ~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~ 214 (264)
T PRK14243 138 WDEVKDKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAA 214 (264)
T ss_pred hhhHHHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHH
Confidence 43211111 123458999999999999999999999999999999999999999999999976 689999999975 588
Q ss_pred hhcCEEEEEe---------CCEEEEecChhHHH
Q 044602 299 HMFDKLLLIS---------EGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~---------~G~iv~~G~~~~~~ 322 (674)
++||++++|+ +|++++.|+++++.
T Consensus 215 ~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 215 RVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred HhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999998 89999999998874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=377.93 Aligned_cols=216 Identities=26% Similarity=0.400 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+++|+|+||++++||+++|+||||||||||+|+|+|+. +
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 55 (501)
T PRK11288 4 YLSFDGIGKTFP---------------------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-Q 55 (501)
T ss_pred eEEEeeeEEEEC---------------------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 488999998773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. .+++.+|||+|++.+++.+||.||+.++............+..++++++++.+||.+..+
T Consensus 56 p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (501)
T PRK11288 56 PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135 (501)
T ss_pred CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC
Confidence 569999999998742 246789999999999999999999998642111111234445567889999999987666
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus 136 ~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 136 TPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred Cch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 655 489999999999999999999999999999999999999999999999878999999999975 57789999
Q ss_pred EEEEeCCEEEEecCh
Q 044602 304 LLLISEGYPVYYGKA 318 (674)
Q Consensus 304 v~~L~~G~iv~~G~~ 318 (674)
+++|++|+++..++.
T Consensus 210 i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 210 ITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEECCEEEeecCc
Confidence 999999999877653
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.73 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=172.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~l 182 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+.. ++.+|+|.++|+++.. . .++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 458999999999999999999999999999999999852 4679999999987642 2 235699999999888888
Q ss_pred CHHHHHHHHHh-hcC--CC-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 183 TVEETLVFAAF-LRL--PG-NMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 183 TV~e~l~~~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
|+.+++.+... .+. .. .....+..+.+++.++.+++++ ..++.+. ++||||||||++|||||+.+|++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88777654321 110 00 0112233456788999999963 3444331 36999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHHHHHHHhCCC
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARESMEYFSSLGF 330 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 330 (674)
||||+|||+.++..+.+.|+++++.|+|||++||++.. +... +|++++|++|++++.|+++.+ +.++..++
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 99999999999999999999998778999999999764 5555 899999999999999998855 34444333
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=423.95 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+||+|+|||.+||+|+||||||||+++|.|++
T Consensus 1236 g~I~f~nVsf~Y~~-------------------------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~- 1289 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-------------------------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV- 1289 (1622)
T ss_pred CcEEEEEEEEEeCC-------------------------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-
Confidence 46999999999952 1246999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
++.+|+|.+||+++++ .+|+++++||||+.+|++ ||+|||.++. ..++ +++.++++..+
T Consensus 1290 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~ 1358 (1622)
T PLN03130 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIR 1358 (1622)
T ss_pred CCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHH
Confidence 5569999999999863 689999999999999998 9999998642 1222 23444444433
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+++..||.||+.+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+++|+++.
T Consensus 1359 ~lp~GLdt~Vge~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t- 1435 (1622)
T PLN03130 1359 RNSLGLDAEVSEAG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT- 1435 (1622)
T ss_pred hCccccCccccCCC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-
Confidence 3678899999755 4699999999999999999999999999999999999999999999875 48999999999875
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+|+++
T Consensus 1436 -I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1436 -IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred -HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 55699999999999999999999974
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=338.06 Aligned_cols=224 Identities=23% Similarity=0.307 Sum_probs=178.7
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++.+|+++.|+...... ..+......++++.++.+++|+|+||++++||+++|+||||||||||+++|+|.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p 74 (224)
T cd03220 1 IELENVSKSYPTYKGGS-----SSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PP 74 (224)
T ss_pred CceeecceeccccccCc-----chhhhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 35678888876432110 0011123445555566678999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 044602 150 VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229 (674)
Q Consensus 150 ~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 229 (674)
.+|+|.++|++... ..+...+.+.+||+||+.+..... .....+..++++++++.++|++..++.++
T Consensus 75 ~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 141 (224)
T cd03220 75 DSGTVTVRGRVSSL--------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-- 141 (224)
T ss_pred CceEEEECCEEchh--------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh--
Confidence 69999999987531 111234556789999999875432 12334445678889999999888887654
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++
T Consensus 142 ---~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 217 (224)
T cd03220 142 ---TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK 217 (224)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999877899999999975 46788999999999
Q ss_pred CEEEEec
Q 044602 310 GYPVYYG 316 (674)
Q Consensus 310 G~iv~~G 316 (674)
|++++.|
T Consensus 218 G~i~~~g 224 (224)
T cd03220 218 GKIRFDG 224 (224)
T ss_pred CEEEecC
Confidence 9998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=384.51 Aligned_cols=229 Identities=24% Similarity=0.378 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+...... . . ..+.+.+|+||||+|++||+++|+||||||||||+|+|+|+++
T Consensus 313 ~L~~~~l~~~y~~~~~~~--~-------------~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~- 375 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLL--N-------------R-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE- 375 (623)
T ss_pred eEEEeeeEEEEcCCCccc--c-------------c-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-
Confidence 589999999885210000 0 0 0012469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. .++++++||+|++ .+++.+||.||+.+..... ....+++..+++.++++.+||+
T Consensus 376 p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~ 453 (623)
T PRK10261 376 SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLL 453 (623)
T ss_pred CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCC
Confidence 569999999998742 2466899999997 5899999999999865432 1112344557889999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+. .+
T Consensus 454 ~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v 527 (623)
T PRK10261 454 PEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VV 527 (623)
T ss_pred HHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 4566654 589999999999999999999999999999999999999999999999875 899999999975 57
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||+|++|++|++++.|+++++.
T Consensus 528 ~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 528 ERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHh
Confidence 8899999999999999999999874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=377.65 Aligned_cols=206 Identities=22% Similarity=0.353 Sum_probs=178.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. ..++.++||+|++.+++.+|
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 569999999999999999999999999999999999874 569999999998742 24568999999998999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+||+.++...........++..++++++++.+|+.+..++.+ .+|||||||||+|||||+.+|++|||||||+|
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~ 164 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 9999987642110101133444567899999999987777765 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 165 LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 165 LTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999888999999999975 57789999999999999999987664
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=343.79 Aligned_cols=199 Identities=27% Similarity=0.427 Sum_probs=174.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+|+|+||++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 799999999999999999999999999999999987 44 8999999998742 34567999999988888899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh-------CCCEEEEeC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV-------DPSLLLLDE 259 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~-------~P~illLDE 259 (674)
|+.+.... ....++..++++++++.+||.+..++.+ +.||||||||++|||||+. +|++|+|||
T Consensus 89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE 159 (248)
T PRK03695 89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE 159 (248)
T ss_pred HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC
Confidence 99886321 1223344567899999999987777654 4899999999999999998 679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 160 Pt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 160 PMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999877999999999975 47889999999999999999998776
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=343.12 Aligned_cols=201 Identities=31% Similarity=0.465 Sum_probs=161.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. .+++.++|++|++.+++ .||
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chH
Confidence 45899999999999999999999999999999999987 4569999999998742 35678999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYA-----RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
+||+.+.... ....+..+ .+.+.++.+ +...++.+. ..++.||||||||++|||||+.+|++|+|||
T Consensus 92 ~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~llllDE 163 (236)
T cd03253 92 GYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPILLLDE 163 (236)
T ss_pred HHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999876321 11111111 122333333 112222222 2346899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||+|||+.+...+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+.+++.
T Consensus 164 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 164 ATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999977 9999999999864 4 459999999999999999887764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=340.15 Aligned_cols=194 Identities=30% Similarity=0.514 Sum_probs=162.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .||
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTL 94 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chH
Confidence 45999999999999999999999999999999999987 4569999999998642 34668999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG------GGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
.||+.+.... .. .+.++++++.+++.+..++.+. ...+.+||||||||++|||||+.+|++|+||
T Consensus 95 ~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD 165 (220)
T cd03245 95 RDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD 165 (220)
T ss_pred HHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999875211 11 2345677888888765554321 1224589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
|||+|||+.++..+.+.|+++++ ++|||++||++.. + ++||++++|++|++++.|
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 166 EPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL-L-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999876 4899999999863 4 799999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=386.87 Aligned_cols=199 Identities=31% Similarity=0.513 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+. +.+++|+|+|++++|||.++|+||||||||||+|+|+|.. +
T Consensus 320 ~i~~~~v~f~y~~-------------------------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~ 373 (529)
T TIGR02857 320 SLEFSGLSVAYPG-------------------------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-D 373 (529)
T ss_pred eEEEEEEEEECCC-------------------------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 6999999998852 1246899999999999999999999999999999999977 5
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC------
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL------ 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------ 218 (674)
+.+|+|.+||+++++ ++|++++||+|++.+|++ |++||+.++.. ..++ +++++.++..++
T Consensus 374 ~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~ 443 (529)
T TIGR02857 374 PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAA 443 (529)
T ss_pred CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHh
Confidence 569999999998753 578899999999999987 99999998631 1222 234444444443
Q ss_pred -CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 -ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 -~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++..||.+|+.+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +|+|+|+++|+++.
T Consensus 444 lp~Gldt~v~e~g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-- 519 (529)
T TIGR02857 444 LPQGLDTLIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL-- 519 (529)
T ss_pred Ccccccchhcccc-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--
Confidence 567899998754 4699999999999999999999999999999999999999999999885 58999999999854
Q ss_pred HhhcCEEEEE
Q 044602 298 FHMFDKLLLI 307 (674)
Q Consensus 298 ~~~~D~v~~L 307 (674)
.+.||+|++|
T Consensus 520 ~~~~d~i~~l 529 (529)
T TIGR02857 520 AERADRIVVL 529 (529)
T ss_pred HHhCCEEEeC
Confidence 5789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=423.16 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|++
T Consensus 1233 g~I~f~nVsf~Y~~-------------------------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~- 1286 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-------------------------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV- 1286 (1495)
T ss_pred CcEEEEEEEEEECC-------------------------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 46999999999952 2256999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
++.+|+|.+||+++++ .+|++++|||||+.+|++ |++|||.++. ..++ +++.++++..+
T Consensus 1287 ~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~ 1355 (1495)
T PLN03232 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVID 1355 (1495)
T ss_pred cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHH
Confidence 5569999999999863 689999999999999998 9999997642 1222 23444455444
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+++|+++.
T Consensus 1356 ~lp~GLdt~v~e~G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t- 1432 (1495)
T PLN03232 1356 RNPFGLDAEVSEGG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT- 1432 (1495)
T ss_pred hCcCCCCceecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-
Confidence 3567899998755 4699999999999999999999999999999999999999999999875 48999999999865
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+|+++
T Consensus 1433 -i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1433 -IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 55699999999999999999999863
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=350.07 Aligned_cols=225 Identities=24% Similarity=0.407 Sum_probs=183.8
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|++
T Consensus 43 ~~~l~i~nl~~~~~---------------------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 43 DAKLSVEDLDVYYG---------------------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CceEEEEEEEEEeC---------------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999998773 245899999999999999999999999999999999987
Q ss_pred CC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC---------CCC-HHHHH
Q 044602 147 TD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG---------NMN-RQQKY 206 (674)
Q Consensus 147 ~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~---------~~~-~~~~~ 206 (674)
.+ +.+|+|.++|.++.. ..++.++|++|++.+++. ||+||+.++....... ... .....
T Consensus 96 ~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (305)
T PRK14264 96 DRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174 (305)
T ss_pred cccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHH
Confidence 42 469999999988642 346789999999988885 9999999875321000 011 22335
Q ss_pred HHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q 044602 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286 (674)
Q Consensus 207 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 286 (674)
++++++++.+++.+...... +..+++||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++||
T Consensus 175 ~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~ti 252 (305)
T PRK14264 175 ELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTV 252 (305)
T ss_pred HHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 67888999998854332222 234568999999999999999999999999999999999999999999999976 5899
Q ss_pred EEEecCCchHHHhhcCEE-EEEeCCEEEEecChhHHH
Q 044602 287 ITTIHQPSSRMFHMFDKL-LLISEGYPVYYGKARESM 322 (674)
Q Consensus 287 i~~~H~~~~~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 322 (674)
|++||++. .+.++||++ ++|++|++++.|+++++.
T Consensus 253 iivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999975 477899997 578999999999988763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=318.71 Aligned_cols=202 Identities=30% Similarity=0.505 Sum_probs=181.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
..+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||+++... -..-|.|+|++.++|.+||.||+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNv 95 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNV 95 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCC-CccceeEeccCccchhhHHHHHH
Confidence 459999999999999999999999999999999999885 4699999999998631 12358999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.|+.+++ .+.+.++.+++.+.+..+||.+..++.+ -+||||||||+.|||||+.+|++|+||||+++||.-+
T Consensus 96 afgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~t 167 (259)
T COG4525 96 AFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALT 167 (259)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHH
Confidence 9999886 5788999999999999999998877655 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe--CCEEEEecChhHH
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS--EGYPVYYGKARES 321 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~~~ 321 (674)
++++.++|-++.+ .|+.++++||+..+ ..-+++++++|+ .|+++..-+++=.
T Consensus 168 Re~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 168 REQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHH
Confidence 9999999988876 59999999999764 566899999998 6899988777633
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=334.70 Aligned_cols=202 Identities=22% Similarity=0.290 Sum_probs=174.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++++ .+.+|+|+||++++||+++|+||||||||||+|+|+|..
T Consensus 10 ~~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~- 61 (214)
T PRK13543 10 PLLAAHALAFSRN---------------------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL- 61 (214)
T ss_pred ceEEEeeEEEecC---------------------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-
Confidence 4689999998663 245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 148 DDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.+....+. . ...+.++++++.++|.+..++.+
T Consensus 62 ~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~ 135 (214)
T PRK13543 62 HVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV 135 (214)
T ss_pred CCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh
Confidence 4569999999998753 334579999999999999999999988754321 1 12345678899999988777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
..||||||||++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.++||++++
T Consensus 136 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~ 209 (214)
T PRK13543 136 -----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLT 209 (214)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEE
Confidence 489999999999999999999999999999999999999999999999888999999999976 57899999999
Q ss_pred EeC
Q 044602 307 ISE 309 (674)
Q Consensus 307 L~~ 309 (674)
++.
T Consensus 210 l~~ 212 (214)
T PRK13543 210 LEA 212 (214)
T ss_pred Eee
Confidence 864
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=341.90 Aligned_cols=217 Identities=24% Similarity=0.417 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++++. .+.+|+|+||++++||+++|+||||||||||+++|+|...
T Consensus 10 ~i~~~~~~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~- 61 (257)
T PRK14246 10 VFNISRLYLYIN---------------------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE- 61 (257)
T ss_pred heeeeeEEEecC---------------------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 388999998763 2568999999999999999999999999999999999874
Q ss_pred CCccEEEECC------EeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 DVKGNITYND------IPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~~~G~I~~~g------~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++| +++.. ..++.++|++|++.+++++||+||+.++.... ....+++..++++++++.+++
T Consensus 62 ~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 139 (257)
T PRK14246 62 IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGL 139 (257)
T ss_pred CCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 4466555554 54421 35678999999999999999999999875432 112234455678899999999
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++ .+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 140 ~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~ 213 (257)
T PRK14246 140 WKEVYDRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ 213 (257)
T ss_pred CccchhhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH
Confidence 64 3333 3458999999999999999999999999999999999999999999999965 799999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++||++++|++|+++..|+++++.
T Consensus 214 -~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 214 -QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999998764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=376.91 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=177.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEEC-----------------------CEeC---
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYN-----------------------DIPY--- 161 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~-----------------------g~~~--- 161 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ ++.+|+|.++ |.++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 469999999999999999999999999999999999863 4569999997 2221
Q ss_pred -------Ch----hccccEEEEccC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 044602 162 -------NP----ALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229 (674)
Q Consensus 162 -------~~----~~~~~igyv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 229 (674)
.. ..++.++||+|+ +.+++.+||+||+.++.... ..+.++..++++++++.+||++..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 166 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIA--- 166 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCc---
Confidence 01 235679999997 67888899999999875432 2334455678899999999987777655
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||+. .+.++||++++|+
T Consensus 167 --~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~ 243 (520)
T TIGR03269 167 --RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLE 243 (520)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 48999999999999999999999999999999999999999999999976 4899999999976 4678999999999
Q ss_pred CCEEEEecChhHHHHHH
Q 044602 309 EGYPVYYGKARESMEYF 325 (674)
Q Consensus 309 ~G~iv~~G~~~~~~~~f 325 (674)
+|++++.|+++++.+.+
T Consensus 244 ~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 244 NGEIKEEGTPDEVVAVF 260 (520)
T ss_pred CCEEeeecCHHHHHHHH
Confidence 99999999998876544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=384.25 Aligned_cols=222 Identities=22% Similarity=0.349 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|... .+..++|+||||++++||++||+||||||||||+|+|+|+++
T Consensus 12 ~l~v~~l~~~y~~~-----------------------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~- 67 (623)
T PRK10261 12 VLAVENLNIAFMQE-----------------------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE- 67 (623)
T ss_pred eEEEeceEEEecCC-----------------------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-
Confidence 59999999988521 112469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeC-------------Ch----hcc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH
Q 044602 149 DVKGNITYNDIPY-------------NP----ALK-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR 208 (674)
Q Consensus 149 ~~~G~I~~~g~~~-------------~~----~~~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~ 208 (674)
+.+|+|.++|.++ .. .++ +.||||+|++ .+++.+||.||+.++..... ..++.+..++
T Consensus 68 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~ 145 (623)
T PRK10261 68 QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVE 145 (623)
T ss_pred CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 4599999998643 11 122 4799999997 68888999999999865421 2345556678
Q ss_pred HHHHHHHcCCCc---cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-Cc
Q 044602 209 VQMILKELGLER---CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GR 284 (674)
Q Consensus 209 v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~ 284 (674)
++++++.+||++ ..++. +.+|||||||||+||+||+.+|++|||||||++||+.++.++.+.|++++++ |+
T Consensus 146 ~~~~l~~~gL~~~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~ 220 (623)
T PRK10261 146 AKRMLDQVRIPEAQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM 220 (623)
T ss_pred HHHHHHHCCCCChhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 899999999964 34444 4589999999999999999999999999999999999999999999999865 89
Q ss_pred EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 285 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||++|||+. .+.++||||++|++|++++.|+++++.
T Consensus 221 tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 221 GVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 9999999975 477899999999999999999988764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=331.79 Aligned_cols=186 Identities=24% Similarity=0.385 Sum_probs=161.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+||.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 458999999999999999999999999999999999874 569999999998742 4567899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+...... . +..++++++++.+||.+..++.+ ..||||||||++|||||+++|++++|||||+|||
T Consensus 93 e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 93 ENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred HHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99998754321 1 23457889999999987777654 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.++..+.+.|++++++|+|+|++||++.. +.+..+|++.+
T Consensus 162 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 162 KQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999998778999999999764 55666677766
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=411.45 Aligned_cols=224 Identities=24% Similarity=0.365 Sum_probs=199.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+. +.+.+|+|+|+.|++||+++|+||||||||||+|+|+|...
T Consensus 1936 ~~L~v~nLsK~Y~~-------------------------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ 1990 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-------------------------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT 1990 (2272)
T ss_pred ceEEEEEEEEEECC-------------------------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999987741 12569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 148 DDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+++|+|.++|+++.. ..++.+||++|++.+++.+||+||+.+.+..+ +.++++.+++++++++.+||.+..|+
T Consensus 1991 -ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk 2066 (2272)
T TIGR01257 1991 -VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADR 2066 (2272)
T ss_pred -CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcC
Confidence 569999999998852 35678999999999999999999999877654 23444556678899999999988888
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+++ +|||||||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++. ++.++|||+
T Consensus 2067 ~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV 2140 (2272)
T TIGR01257 2067 LAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRL 2140 (2272)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 765 89999999999999999999999999999999999999999999999888999999999975 688999999
Q ss_pred EEEeCCEEEEecChhHHHHHHH
Q 044602 305 LLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
++|++|+++..|+++++.+.|.
T Consensus 2141 ~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2141 AIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEECCEEEEECCHHHHHHHhC
Confidence 9999999999999999987775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=377.80 Aligned_cols=207 Identities=21% Similarity=0.405 Sum_probs=176.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~ 180 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|.++++.+|+|.++|+++.. ..++.++||+|++ .+++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 4699999999999999999999999999999999998754469999999988642 2356799999995 4788
Q ss_pred CCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 181 QLTVEETLVFAAFLRLPG--NMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.+||.||+.++....... ...+++..++++++++.++|. +..+++++ +|||||||||+|||||+.+|++|||
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllL 429 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILIL 429 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 899999998764211110 012334456789999999996 46676654 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 430 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 430 DEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred cCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999888999999999975 57889999999999999999987764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=375.36 Aligned_cols=223 Identities=25% Similarity=0.394 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+.. .+.+.+|+|+||++++||++||+||||||||||+|+|+|.+++
T Consensus 5 ~l~~~~l~~~~~~~-----------------------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 5 LLAIENLSVAFRQQ-----------------------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred eEEEeceEEEecCC-----------------------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 48999999988421 0124699999999999999999999999999999999998854
Q ss_pred ----CCccEEEECCEeCCh-------hcc-ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 149 ----DVKGNITYNDIPYNP-------ALK-RRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~-------~~~-~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
+.+|+|.++|+++.. ..+ +.+|||+|++. +++.+||.||+.+..... ...++.+..++++++++
T Consensus 62 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 139 (529)
T PRK15134 62 PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLD 139 (529)
T ss_pred CcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 268999999998742 122 57999999974 677789999988654321 12344556678899999
Q ss_pred HcCCCcc---ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEe
Q 044602 215 ELGLERC---RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTI 290 (674)
Q Consensus 215 ~lgL~~~---~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 290 (674)
.+||.+. .++++ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|
T Consensus 140 ~~gl~~~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 214 (529)
T PRK15134 140 RVGIRQAAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214 (529)
T ss_pred HCCCCChHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 9999752 35544 589999999999999999999999999999999999999999999999875 89999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++. .+.++||||++|++|++++.|+++++.
T Consensus 215 Hd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 215 HNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9976 467899999999999999999988764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=341.32 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=182.3
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++++|++++|+ .+++|+|+|+++++||+++|+|+||||||||+++|+|.
T Consensus 13 ~~~~l~~~~l~~~~~---------------------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 13 TQQKSEVNKLNFYYG---------------------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CCceEEEEEEEEEEC---------------------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 345689999999774 24599999999999999999999999999999999998
Q ss_pred CCC-C---CccEEEECCEeCC--------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHH
Q 044602 146 LTD-D---VKGNITYNDIPYN--------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN-RQQKYARVQMI 212 (674)
Q Consensus 146 ~~~-~---~~G~I~~~g~~~~--------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~ 212 (674)
..+ + .+|+|.++|.++. ..+++.++|++|++.+++. ||+||+.++.... ... +...+++++++
T Consensus 66 ~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~ 141 (265)
T PRK14252 66 HDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENA 141 (265)
T ss_pred cCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHH
Confidence 753 1 6899999997653 1356789999999999986 9999998875322 111 22334567888
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
++.+++.+...... +..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+
T Consensus 142 l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~ 219 (265)
T PRK14252 142 LRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN 219 (265)
T ss_pred HHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecC
Confidence 88888743211111 123458999999999999999999999999999999999999999999999976 7999999999
Q ss_pred CchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 293 PSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 293 ~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+. ++.++||++++|++|++++.|+.+++
T Consensus 220 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 220 MQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 75 47789999999999999999998876
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=377.23 Aligned_cols=205 Identities=27% Similarity=0.455 Sum_probs=176.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCC--CCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLL 179 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~ 179 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|++ + .+|+|.++|+++.. .+++.+|||+|++ .++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 56999999999999999999999999999999999987 4 59999999988642 1356799999996 488
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+.+||.||+.++...+. ......+..++++++++.+||. +..++.+ .+|||||||||+|||||+.+|++||||
T Consensus 377 ~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllD 450 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILD 450 (529)
T ss_pred CcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 88999999998753321 1123344556788999999997 4566654 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 451 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999875 899999999975 477899999999999999999988774
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=309.04 Aligned_cols=204 Identities=29% Similarity=0.489 Sum_probs=181.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-------h---hccccEEEEccCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-------P---ALKRRIGFVTQDD 176 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-------~---~~~~~igyv~Q~~ 176 (674)
+..++|.||+++.+.||.+.++||||+|||||++.|. ++.-+.+|+..+.|...+ + ++|+.+|+|+|..
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 3467899999999999999999999999999999998 555566999999876542 1 5788999999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
.++|++||.|||.-+- ++. .++++++...++.++|+.+.|.+.+|+. +-.|||||+|||+|||||+.+|++|+
T Consensus 92 ~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvll 164 (242)
T COG4161 92 NLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEEe
Confidence 9999999999987642 222 2467888888999999999999998874 45899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChh
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
+||||++|||+-..++++++++++..|.|-+++||... ...+.+.+|+.|++|+||+.|+++
T Consensus 165 fdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 165 FDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred ecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999999999999999999975 467889999999999999999876
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=329.49 Aligned_cols=180 Identities=32% Similarity=0.445 Sum_probs=154.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-TDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. .++.+|+|.+||+++.. . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 45999999999999999999999999999999999984 24579999999998753 1 244699999999999988
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+++++. . ..+.||||||||++|||+|+.+|++++|||||+
T Consensus 93 ~~~~~l~----------------------------------~-----~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 133 (200)
T cd03217 93 KNADFLR----------------------------------Y-----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS 133 (200)
T ss_pred cHHHHHh----------------------------------h-----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8888660 0 013799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh-hcCEEEEEeCCEEEEecChhHHHHHHHhCC
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH-MFDKLLLISEGYPVYYGKARESMEYFSSLG 329 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g 329 (674)
|||+.++..+.+.|++++++|+|+|++||++. .+.+ .||++++|++|++++.|+. ++.+.|...|
T Consensus 134 ~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~~~ 199 (200)
T cd03217 134 GLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEIEKKG 199 (200)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhhcccc
Confidence 99999999999999999877899999999986 4555 7999999999999999944 4655554433
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=373.99 Aligned_cols=204 Identities=26% Similarity=0.415 Sum_probs=174.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEEC-CEe---CCh-------hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIP---YNP-------ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~-g~~---~~~-------~~~~~igyv~Q~~~ 177 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++ |.+ +.. ..++.+|||+|++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 469999999999999999999999999999999999874 569999996 532 211 23567999999998
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-----CRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
+++.+||.||+.+..... ...++.+++++++++.+||.+ ..++++ .+|||||||||+|||||+.+|
T Consensus 376 l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p 446 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP-----DELSEGERHRVALAQVLIKEP 446 (520)
T ss_pred cCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999998764321 223334567889999999975 345544 589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
++|||||||+|||+.++..+++.|++++++ |+|||++|||+. .+.++||++++|++|++++.|+++++.+
T Consensus 447 ~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 447 RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999765 899999999975 5788999999999999999999887643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=329.90 Aligned_cols=183 Identities=26% Similarity=0.424 Sum_probs=161.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC---hhccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---PALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~---~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ..+++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 46899999999999999999999999999999999987 456999999998864 24567899999999998889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+.... . ..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++++|||||+|||
T Consensus 92 e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 92 ENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred HHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999875311 1 2356789999999987777654 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.++..+.+.|++++++|+|+|++||++.. ....+|+++++
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999988779999999999764 67789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=322.07 Aligned_cols=158 Identities=37% Similarity=0.618 Sum_probs=145.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 35899999999999999999999999999999999987 4569999999998753 4567899999999999989999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+. ||||||||++|||||+.+|++++|||||+|||
T Consensus 92 ~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 92 ENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred HHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9873 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
+.++..+.+.|++++++|.|+|++||++. ++.+.||++++|++|++
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999877899999999975 57779999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=359.84 Aligned_cols=216 Identities=27% Similarity=0.438 Sum_probs=194.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ ..++|+||||++++||++||+|.||||||||+|+|+|.+
T Consensus 7 ~ll~~~~i~K~Fg---------------------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~- 58 (500)
T COG1129 7 PLLELRGISKSFG---------------------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY- 58 (500)
T ss_pred ceeeeecceEEcC---------------------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-
Confidence 3588999998774 356999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 148 DDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL-PGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
++++|+|.+||++... .....|+.|+|+..|+|+|||.|||.++...+. ..-+++++..+++.++|+.+|+...
T Consensus 59 ~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~ 138 (500)
T COG1129 59 PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID 138 (500)
T ss_pred cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC
Confidence 4679999999998751 356689999999999999999999998865443 2346778888999999999999655
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+++|+ +||+||||.|.|||||..+++||+||||||+|+......+.+.+++|+++|.++|++||.+. +++++|
T Consensus 139 ~~~~v~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~ 212 (500)
T COG1129 139 PDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIA 212 (500)
T ss_pred hhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhc
Confidence 888876 89999999999999999999999999999999999999999999999999999999999975 799999
Q ss_pred CEEEEEeCCEEEEecC
Q 044602 302 DKLLLISEGYPVYYGK 317 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~ 317 (674)
|||.||.||+.+..++
T Consensus 213 DritVlRDG~~v~~~~ 228 (500)
T COG1129 213 DRITVLRDGRVVGTRP 228 (500)
T ss_pred CEEEEEeCCEEeeecc
Confidence 9999999999998887
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=417.13 Aligned_cols=215 Identities=20% Similarity=0.303 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|++
T Consensus 1283 g~I~f~nVsf~Y~~-------------------------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~- 1336 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-------------------------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN- 1336 (1522)
T ss_pred CcEEEEEEEEEeCC-------------------------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-
Confidence 46999999999962 1246999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||+++++ .+|++++|||||+.+|++ |++|||.... ..++ +.+.++++..++
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~ 1405 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVS 1405 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHh
Confidence 5569999999999864 689999999999999998 9999997321 1233 234445555443
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..|+.||+.+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+++|+++.
T Consensus 1406 ~lp~GLdt~v~e~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t- 1482 (1522)
T TIGR00957 1406 ALPDKLDHECAEGG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT- 1482 (1522)
T ss_pred hCccCCCceecCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-
Confidence 567899998754 4699999999999999999999999999999999999999999999875 48999999999865
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+|+++
T Consensus 1483 -i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1483 -IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 56799999999999999999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=338.39 Aligned_cols=211 Identities=25% Similarity=0.447 Sum_probs=170.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..
T Consensus 10 ~~l~~~~l~~~~~~~------------------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~- 64 (226)
T cd03248 10 GIVKFQNVTFAYPTR------------------------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY- 64 (226)
T ss_pred ceEEEEEEEEEeCCC------------------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-
Confidence 348999999988521 1135899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc--CCCcc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GLERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~ 221 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.++..........+......++++++.+ |+.+.
T Consensus 65 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 143 (226)
T cd03248 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143 (226)
T ss_pred CCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhh-hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccch
Confidence 4569999999987642 346689999999988874 9999998754211000000111122356788888 77665
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++. +++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++.. + ..|
T Consensus 144 ~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~ 215 (226)
T cd03248 144 VGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERA 215 (226)
T ss_pred hhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhC
Confidence 5554 458999999999999999999999999999999999999999999999875 6999999999864 5 459
Q ss_pred CEEEEEeCCEE
Q 044602 302 DKLLLISEGYP 312 (674)
Q Consensus 302 D~v~~L~~G~i 312 (674)
|++++|++|++
T Consensus 216 d~i~~l~~g~i 226 (226)
T cd03248 216 DQILVLDGGRI 226 (226)
T ss_pred CEEEEecCCcC
Confidence 99999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=334.56 Aligned_cols=230 Identities=23% Similarity=0.314 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+.++++||+..|+..+.. ..+ . ........+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~~~-~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~- 74 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTN--KER---M-KDALIPKHK-NKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL- 74 (264)
T ss_pred ceEEEeeeEEEEEecccc--hHH---H-HHHhhhhcc-CCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-
Confidence 568999999888653211 000 0 000111111 13357999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++.+|+|.++|. +++++|+..+.+.+||.||+.+..... ....++..+.++++++.++|.+..++.+
T Consensus 75 ~p~~G~I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 141 (264)
T PRK13546 75 SPTVGKVDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV- 141 (264)
T ss_pred CCCceEEEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-
Confidence 456999999985 456778877788899999998765332 2234444556788899999988777654
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||++++|
T Consensus 142 ----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l 216 (264)
T PRK13546 142 ----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWI 216 (264)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEE
Confidence 489999999999999999999999999999999999999999999999877999999999975 477889999999
Q ss_pred eCCEEEEecChhHHHH
Q 044602 308 SEGYPVYYGKARESME 323 (674)
Q Consensus 308 ~~G~iv~~G~~~~~~~ 323 (674)
++|++++.|+++++.+
T Consensus 217 ~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 217 EGGKLKDYGELDDVLP 232 (264)
T ss_pred ECCEEEEeCCHHHHHH
Confidence 9999999999988754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=333.34 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=169.7
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++++. +.+.+|+|+||++++||+++|+||||||||||+++|+|.. ++
T Consensus 3 l~~~~l~~~~~~-------------------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~ 56 (221)
T cd03244 3 IEFKNVSLRYRP-------------------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-EL 56 (221)
T ss_pred EEEEEEEEecCC-------------------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CC
Confidence 789999987741 1246999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc--
Q 044602 150 VKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH-- 223 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-- 223 (674)
.+|+|.++|.++.. .+++.++|++|++.+++. ||+||+.+... .. .+++.+.++.+++.+..+
T Consensus 57 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l 125 (221)
T cd03244 57 SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSG-TIRSNLDPFGE------YS----DEELWQALERVGLKEFVESL 125 (221)
T ss_pred CCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccc-hHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhc
Confidence 69999999998742 457789999999988875 99999975321 11 123455566666544322
Q ss_pred -----ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 224 -----TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 224 -----~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
+.. +..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++.. +.
T Consensus 126 ~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~ 202 (221)
T cd03244 126 PGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II 202 (221)
T ss_pred cccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh
Confidence 222 124568999999999999999999999999999999999999999999999864 7899999999864 44
Q ss_pred hhcCEEEEEeCCEEEEecC
Q 044602 299 HMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~ 317 (674)
.||++++|++|++++.|+
T Consensus 203 -~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 203 -DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred -hCCEEEEEECCeEEecCC
Confidence 599999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=337.60 Aligned_cols=202 Identities=27% Similarity=0.436 Sum_probs=172.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~- 55 (251)
T PRK09544 4 LVSLENVSVSFG---------------------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA- 55 (251)
T ss_pred EEEEeceEEEEC---------------------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 488999998773 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCC--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ--LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.++| +..++|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++.+
T Consensus 56 p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~ 118 (251)
T PRK09544 56 PDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM 118 (251)
T ss_pred CCceEEEECC-------ccCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh
Confidence 5699999987 2469999999887775 37888765421 111 245778999999988777654
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+++
T Consensus 119 -----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~ 192 (251)
T PRK09544 119 -----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVL 192 (251)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999875 899999999975 5778999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++ ++++.|+++++.
T Consensus 193 ~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 193 CLNH-HICCSGTPEVVS 208 (251)
T ss_pred EECC-ceEeeCCHHHHh
Confidence 9965 799999988763
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=330.55 Aligned_cols=209 Identities=26% Similarity=0.419 Sum_probs=170.5
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+..... ...+.+|+|+||++++||+++|+||||||||||+++|+|.++ +
T Consensus 2 l~~~~l~~~~~~~~~~--------------------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~ 60 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG--------------------GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-P 60 (224)
T ss_pred EEEEeeEEEeecccCC--------------------CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 6889999988531100 012469999999999999999999999999999999999874 5
Q ss_pred CccEEEEC--CE--eCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 150 VKGNITYN--DI--PYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 150 ~~G~I~~~--g~--~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
.+|+|.++ |. ++.. .. ++.++|++|++.+++.+||.||+.+..... .....+..+++.++++.+|
T Consensus 61 ~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~ 137 (224)
T TIGR02324 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLN 137 (224)
T ss_pred CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 69999998 43 3321 12 357999999999999999999998865332 2233444567889999999
Q ss_pred CCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 LERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 L~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|.+. .+..+ .+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .
T Consensus 138 l~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~ 211 (224)
T TIGR02324 138 IPERLWHLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-V 211 (224)
T ss_pred CchhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H
Confidence 9763 35443 589999999999999999999999999999999999999999999999877999999999954 4
Q ss_pred HHhhcCEEEEEe
Q 044602 297 MFHMFDKLLLIS 308 (674)
Q Consensus 297 i~~~~D~v~~L~ 308 (674)
+.++||+++.+.
T Consensus 212 ~~~~~d~i~~~~ 223 (224)
T TIGR02324 212 RELVADRVMDVT 223 (224)
T ss_pred HHHhcceeEecC
Confidence 667899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=325.59 Aligned_cols=182 Identities=27% Similarity=0.405 Sum_probs=157.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 46999999999999999999999999999999999987 4569999999998642 3457899999999899989999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+...... . + .++++++++.+||.+..++.++ +||||||||++||||++.+|++++|||||+|||
T Consensus 92 ~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 92 ENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred HHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99988654321 1 1 3467889999999887777654 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+.++..+.+.|++++++|+|+|++||++.. -.+++++.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 160 KAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999998789999999999854 34577654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=371.56 Aligned_cols=205 Identities=22% Similarity=0.415 Sum_probs=174.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~ 180 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+++.+|+|.++|+++.. ..++++|||+|+. .+++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4699999999999999999999999999999999998854469999999988742 3467899999995 5889
Q ss_pred CCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 181 QLTVEETLVFAAFLRLP--GNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.+||+||+.++...... ......+.+++++++++.++|.+ ..+++++ .|||||||||+|||+|+.+|++|||
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllL 427 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLIL 427 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999886421110 01223344567889999999964 4676654 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChh
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 428 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 428 DEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred cCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999888999999999975 578899999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=413.69 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..|+|+||+|+|+. +.+.+|+||||+|+|||.+||+|+||||||||+++|.|++
T Consensus 1307 G~I~f~nVsf~Y~~-------------------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~- 1360 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-------------------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV- 1360 (1560)
T ss_pred CeEEEEEEEEEeCC-------------------------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 36999999999852 1245999999999999999999999999999999999877
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|++||+++++ ++|+.+||||||+.+|++ ||+|||.... ..++ +.+.++++..||
T Consensus 1361 ~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~ 1429 (1560)
T PTZ00243 1361 EVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVA 1429 (1560)
T ss_pred CCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHh
Confidence 4569999999999863 689999999999999998 9999996421 2232 345566665554
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVD-PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
++..||.||+.+ ..||||||||++|||||+++ |+||+||||||+||+++...|.+.|++.. +++|+|+|+|+++.
T Consensus 1430 ~lp~Gldt~vge~G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1430 SESEGIDSRVLEGG-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT 1507 (1560)
T ss_pred hCcccccccccCCc-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH
Confidence 567899998755 46999999999999999996 89999999999999999999999999864 48999999999864
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||+|++|++|++++.|+|+|+++
T Consensus 1508 --i~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1508 --VAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred --HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 67799999999999999999999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=371.97 Aligned_cols=202 Identities=21% Similarity=0.438 Sum_probs=172.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccC---CCCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQD---DVLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~---~~l~~~ 181 (674)
.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.+|||+|+ ..+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 48999999999999999999999999999999999874 569999999988642 245679999998 468899
Q ss_pred CCHHHHHHHHHhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 182 LTVEETLVFAAFLR---LPG--N-MNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 182 lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+||.||+.++...+ ... . ....+..++++++++.+||. +..++.++ +|||||||||+|||+|+.+|+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCE
Confidence 99999998763211 000 0 12233345678999999996 67777654 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999888999999999975 57889999999999999988866
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=339.34 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=172.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+.
T Consensus 18 ~~i~~~~l~~~~~~-------------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~- 71 (257)
T cd03288 18 GEIKIHDLCVRYEN-------------------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV- 71 (257)
T ss_pred ceEEEEEEEEEeCC-------------------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-
Confidence 35899999998742 1245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHH-----HHHHHHHHHHc--
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK-----YARVQMILKEL-- 216 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l-- 216 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++. |++||+.... ....... ...+++.++.+
T Consensus 72 ~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (257)
T cd03288 72 DIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPG 144 (257)
T ss_pred CCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhccc
Confidence 4569999999998753 457789999999988875 9999985421 0111110 01123334443
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|++ +.++ .....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. +++|+|++||++..
T Consensus 145 ~l~----~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~- 217 (257)
T cd03288 145 GLD----AVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST- 217 (257)
T ss_pred ccC----cEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-
Confidence 333 3232 2346899999999999999999999999999999999999999999999875 48999999999875
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+. .||++++|++|++++.|+++++.+
T Consensus 218 ~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 218 IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 44 499999999999999999987753
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=323.11 Aligned_cols=176 Identities=31% Similarity=0.551 Sum_probs=152.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCC--CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDD--VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~--~l~~ 180 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. .+++.++|++|++ .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 569999999999999999999999999999999999874 569999999998631 3466899999997 3454
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.||+||+.+..... ....++..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++++||||
T Consensus 84 -~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 84 -ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred -ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 69999999875422 1234445567889999999988777765 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
|+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999878999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=325.30 Aligned_cols=181 Identities=26% Similarity=0.385 Sum_probs=156.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. ..+++++|++|++.+++.+||+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 45999999999999999999999999999999999987 4569999999988742 4567899999999888889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+..... .. ..+++++++.+++.+..++.++ +||||||||++||||++.+|++|+|||||+|||
T Consensus 93 ~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD 159 (200)
T PRK13540 93 ENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159 (200)
T ss_pred HHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 9999864211 11 2467899999999876676554 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+.++..+.+.|++++++|+|+|++||++.. ...+|...
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 160 ELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999987779999999999754 45577543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=319.78 Aligned_cols=159 Identities=36% Similarity=0.631 Sum_probs=144.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~l 182 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 45899999999999999999999999999999999987 4569999999988642 3467899999999999889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|++||+.+. ||||||||++|||||+.+|++++|||||+
T Consensus 92 t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 92 TVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred CHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 999987542 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 130 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999887 899999999975 4677899999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=318.28 Aligned_cols=155 Identities=34% Similarity=0.613 Sum_probs=141.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++. ||
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 92 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SI 92 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cH
Confidence 45899999999999999999999999999999999987 4569999999998742 456789999999988885 99
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+||+ ||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~L 127 (173)
T cd03246 93 AENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127 (173)
T ss_pred HHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence 9987 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+.++..+.+.|++++++|+|+|++||++. .+ +.||++++|++|++
T Consensus 128 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 128 DVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999877999999999975 34 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=319.13 Aligned_cols=161 Identities=34% Similarity=0.587 Sum_probs=144.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++ .|++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 35899999999999999999999999999999999987 4569999999997642 35678999999998887 5999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+ +..||||||||++|||||+.+|++|+|||||+|||
T Consensus 93 ~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 93 NNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred Hhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 987 13799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|+++. +++|+|++||++.. + ..||++++|++|++++.|
T Consensus 131 ~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 131 PITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999985 58999999999864 4 569999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.45 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.++
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~- 54 (490)
T PRK10938 3 SLQISQGTFRLS---------------------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP- 54 (490)
T ss_pred eEEEEeEEEEcC---------------------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-
Confidence 488999999773 2359999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCC--C------CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVL--L------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l--~------~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
+.+|+|.++|.++.. ..++.++|++|++.. + ..+||+|++.+. .+..++++++++.+
T Consensus 55 p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 123 (490)
T PRK10938 55 LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQF 123 (490)
T ss_pred CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHc
Confidence 569999999976532 345679999998642 1 146888887532 12245788999999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
||++..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .
T Consensus 124 ~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~ 197 (490)
T PRK10938 124 GITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-E 197 (490)
T ss_pred CCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-H
Confidence 99887777654 89999999999999999999999999999999999999999999999888999999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+.||++++|++|+++..|++++..
T Consensus 198 ~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 198 IPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 78899999999999999999988753
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=354.55 Aligned_cols=198 Identities=22% Similarity=0.337 Sum_probs=169.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.+. ++.+...+.+.+||+||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL 106 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAA---------LIAISSGLNGQLTGIENI 106 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEee---------eEEeccccCCCCcHHHHH
Confidence 46999999999999999999999999999999999987 45699999999752 122344567778999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+..... ..+.++..++++++++.++|.+..++.+ ++||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 107 ~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 107 ELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred Hhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 8854322 2234445567788999999988777765 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHH
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
+..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.+-|
T Consensus 179 r~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 179 TKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999877999999999975 577899999999999999999998876433
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=325.10 Aligned_cols=198 Identities=25% Similarity=0.414 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 53 (207)
T PRK13539 2 MLEGEDLACVRG---------------------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-P 53 (207)
T ss_pred EEEEEeEEEEEC---------------------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478999998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 149 DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++.+||.||+.+..... ... .++++++++.+||.+..++.+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~- 125 (207)
T PRK13539 54 PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF- 125 (207)
T ss_pred CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-
Confidence 569999999987642 25678999999988888899999998765332 111 235789999999987666654
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++.. +.. |+++.+
T Consensus 126 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~ 198 (207)
T PRK13539 126 ----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDL 198 (207)
T ss_pred ----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEee
Confidence 4899999999999999999999999999999999999999999999988789999999999754 443 888877
Q ss_pred eC
Q 044602 308 SE 309 (674)
Q Consensus 308 ~~ 309 (674)
+.
T Consensus 199 ~~ 200 (207)
T PRK13539 199 GP 200 (207)
T ss_pred cC
Confidence 54
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=318.35 Aligned_cols=160 Identities=26% Similarity=0.519 Sum_probs=145.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQL 182 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~l 182 (674)
+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 799999999999999999999999999999999987 4569999999988742 2467899999984 578889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|++||+.+... ||||||||++|||||+.+|++|+|||||+
T Consensus 94 t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~ 133 (182)
T cd03215 94 SVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTR 133 (182)
T ss_pred cHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCc
Confidence 99999987420 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|++
T Consensus 134 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 134 GVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999877899999999975 57889999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=328.57 Aligned_cols=197 Identities=28% Similarity=0.443 Sum_probs=165.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEETLVFAAFL 194 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~--~~lTV~e~l~~~~~~ 194 (674)
|++++||+++|+||||||||||+++|+|..+ +.+|+|.+||+++.. .++.++|++|++.++ ..+|+.||+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 4689999999999999999999999999874 569999999988643 456899999998663 347999999876321
Q ss_pred cCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 044602 195 RLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273 (674)
Q Consensus 195 ~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~ 273 (674)
... ......+..++++++++.+|+.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 100 00112233456889999999987777665 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 274 QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 274 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 154 ~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 154 ELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999877999999999976 478899999999 89999999988763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=322.93 Aligned_cols=198 Identities=21% Similarity=0.360 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+. +
T Consensus 6 ~l~~~~l~~~~~~-------------------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~ 59 (207)
T cd03369 6 EIEVENLSVRYAP-------------------------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-E 59 (207)
T ss_pred eEEEEEEEEEeCC-------------------------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-C
Confidence 4889999997742 1135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +.
T Consensus 60 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~ 121 (207)
T cd03369 60 AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE 121 (207)
T ss_pred CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC
Confidence 569999999998642 356789999999988875 9999997531 1121 12333333 1 22
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .+|++
T Consensus 122 -----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v 193 (207)
T cd03369 122 -----GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKI 193 (207)
T ss_pred -----CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEE
Confidence 345899999999999999999999999999999999999999999999985 48999999999864 44 49999
Q ss_pred EEEeCCEEEEecCh
Q 044602 305 LLISEGYPVYYGKA 318 (674)
Q Consensus 305 ~~L~~G~iv~~G~~ 318 (674)
++|++|+++..|++
T Consensus 194 ~~l~~g~i~~~g~~ 207 (207)
T cd03369 194 LVMDAGEVKEYDHP 207 (207)
T ss_pred EEEECCEEEecCCC
Confidence 99999999988864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=366.83 Aligned_cols=205 Identities=21% Similarity=0.379 Sum_probs=175.3
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~ 181 (674)
.+++|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 5899999999999999999999999999999999987 4569999999988642 2456899999996 48888
Q ss_pred CCHHHHHHHHHhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 182 LTVEETLVFAAFLRL-PGN--MNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 182 lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||.||+.++..... ... ....+.++.++++++.+|+. +..+++++ .|||||||||+|||+|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987542110 001 12233345788999999994 66777665 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|++++.|+++++
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999888999999999975 57899999999999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=365.38 Aligned_cols=205 Identities=22% Similarity=0.415 Sum_probs=175.4
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~ 181 (674)
.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.+|||+|++ .+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 47999999999999999999999999999999999874 469999999988742 2456799999996 57888
Q ss_pred CCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 182 LTVEETLVFAAFLRLP---GNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||.||+.+....... .....++..++++++++.+||. +..+++++ +|||||||||+|||||+.+|++|||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0122334456788999999995 56777654 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999888999999999975 57889999999999999999988765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=333.64 Aligned_cols=234 Identities=26% Similarity=0.437 Sum_probs=201.7
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..++.++.+||...|+.+..- . +-..+...++++||+++++||.++|+|.||||||||-.+|.+
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~-------------~---~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr 335 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGF-------------L---RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335 (534)
T ss_pred CCCceEEecceEEEEecCCcc-------------c---cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh
Confidence 355779999999888765221 0 001233568999999999999999999999999999999997
Q ss_pred CCCCCCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 145 RLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 145 ~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
++ ++ +|+|.++|+++.. .+|+++-.||||| .|-|.+||.|-+.-+.....+ ..+++++.+++.+.|++
T Consensus 336 L~-~s-~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~E 412 (534)
T COG4172 336 LI-PS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEE 412 (534)
T ss_pred hc-Cc-CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHH
Confidence 76 43 6999999999862 3688999999998 489999999999998776543 46889999999999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
+||+... -+++++++|||||||++||||++.+|++++||||||+||..-+.+|+++|++|.++ |.+-++++||..
T Consensus 413 VGLDp~~----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 413 VGLDPAT----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred cCCChhH----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 9997532 23578999999999999999999999999999999999999999999999999864 999999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+..+||+|+||++|+||+.|+.+++.
T Consensus 489 -VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 489 -VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred -HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 588899999999999999999999874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=402.89 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=185.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+.+|+|+||+|+|||.+||+|+||||||||+++|.|+.
T Consensus 1216 g~I~f~nVs~~Y~~-------------------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~- 1269 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-------------------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL- 1269 (1490)
T ss_pred CeEEEEEEEEEeCC-------------------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-
Confidence 46999999999862 2356999999999999999999999999999999999976
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
+ .+|+|++||.+++. .+|++++|||||+.+|++ ||+|||.... ..+ ++++.++++..+|
T Consensus 1270 ~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1270 S-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred C-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHH
Confidence 4 58999999999863 588999999999999998 9999996421 122 3456667776665
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..|+.||+.+ ..||||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++.
T Consensus 1338 ~lp~GLdt~v~e~G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t- 1414 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGG-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA- 1414 (1490)
T ss_pred hCccccccccccCC-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-
Confidence 457899998754 4699999999999999999999999999999999999999999999875 48999999999864
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+++++
T Consensus 1415 -i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1415 -LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred -HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 56699999999999999999999863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=315.94 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=185.1
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~l 182 (674)
+.+.||+|+|+++++|.+++|+|||||||||||.+++.++ +..+|+|.++|.++.. ++.++++..-|+..+-..+
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rl 90 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRL 90 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhee
Confidence 4578999999999999999999999999999999999655 5669999999999853 5778899999999888899
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||+|-+.|+..-... +...++....+++.++.++|++..|+.+ .+||||||||.-||..++.+.+.++||||.+
T Consensus 91 TV~dLv~FGRfPYSq-GRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLN 164 (252)
T COG4604 91 TVRDLVGFGRFPYSQ-GRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164 (252)
T ss_pred EHHHHhhcCCCcccC-CCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCccc
Confidence 999999998433222 2234566778999999999999888765 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||-..+..+++.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++|++
T Consensus 165 NLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhc
Confidence 99999999999999999986 9999999999875 56789999999999999999999985
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=310.17 Aligned_cols=231 Identities=29% Similarity=0.398 Sum_probs=200.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++||.+++.. .++||++||++|++||+.+||||||||||||.++|+|.-.
T Consensus 3 ~L~I~dLhv~v~~--------------------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 3 MLEIKDLHVEVEG--------------------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred eeEEeeeEEEecC--------------------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 5889999987641 1579999999999999999999999999999999999753
Q ss_pred CCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-c
Q 044602 148 DDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-C 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~ 221 (674)
..++|+|.++|+++.+ +.|..+..-+|.|.=+|+.|+.+-|..+...+....-...+..+++++.++.+++++ .
T Consensus 57 ~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 136 (251)
T COG0396 57 EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136 (251)
T ss_pred eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH
Confidence 4579999999999853 567789999999999999999999998776543221113456678899999999987 6
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
+++.|. .++|||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|.+++++||.. ++..+.
T Consensus 137 l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i 210 (251)
T COG0396 137 LERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYI 210 (251)
T ss_pred hhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhc
Confidence 677765 38999999999999999999999999999999999999999999999999999999999985 456665
Q ss_pred --CEEEEEeCCEEEEecChhHHHHHHHhCCCCC
Q 044602 302 --DKLLLISEGYPVYYGKARESMEYFSSLGFIP 332 (674)
Q Consensus 302 --D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~ 332 (674)
|+|.+|.+|+|+..|.+ ++.++++..||.|
T Consensus 211 ~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 211 KPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999999999999 9999999999865
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=327.52 Aligned_cols=193 Identities=29% Similarity=0.475 Sum_probs=173.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++++.+.-.++||-|+||||||||+|+|+|+..| .+|.|.+||..+.+ .-+|+|||||||..|||++||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 78888888679999999999999999999998854 59999999986532 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
.||.|+.... .....+++.+.+|++|..++. +..|||||||||+|+|||+++|++|+||||.++||
T Consensus 95 gNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD 160 (352)
T COG4148 95 GNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred cchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcc
Confidence 9999985321 335678899999999999875 45899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
-..+.+++-.|++|+++ +..|+.+||.+. |+.+++|+|++|++|++...|+.+++.
T Consensus 161 ~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 161 LPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred cchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHh
Confidence 99999999999999986 889999999964 799999999999999999999999874
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=342.43 Aligned_cols=186 Identities=30% Similarity=0.488 Sum_probs=164.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH
Q 044602 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ 204 (674)
Q Consensus 127 ilG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~ 204 (674)
|+||||||||||||+|+|+. ++.+|+|.++|+++.. ..++.+||++|++.+++++||+||+.|+...+ ...+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 68999999999999999987 4569999999998753 34678999999999999999999999986432 234445
Q ss_pred HHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 044602 205 KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G 283 (674)
Q Consensus 205 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g 283 (674)
..++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 5667899999999988777654 589999999999999999999999999999999999999999999999765 8
Q ss_pred cEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 284 ~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 152 ~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 152 ITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999975 578899999999999999999999874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=306.86 Aligned_cols=200 Identities=27% Similarity=0.439 Sum_probs=173.4
Q ss_pred cccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccC
Q 044602 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQD 175 (674)
Q Consensus 100 ~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~ 175 (674)
+++.|..++.++|+|+||.+++||..+|.||||||||||+|+++.+. ++++|.+++.|++++. .+|.+|+|+.|.
T Consensus 7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 33444456678999999999999999999999999999999999766 5679999999999863 689999999999
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 176 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+.||++ ||++|+.|.-..+-.. -..+...++|+.++|++.. ++. +.+||||||||++|+|.|..-|+|
T Consensus 86 paLfg~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~I 154 (223)
T COG4619 86 PALFGD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKI 154 (223)
T ss_pred cccccc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCce
Confidence 999998 9999999987765322 1335677899999998653 333 358999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+||||||+||+.+++.|.++|.++. ++++.++.+|||+. +..+.+||++-+..|++
T Consensus 155 LLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 155 LLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred EEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 99999999999999999999998887 56899999999976 46789999999999975
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=316.31 Aligned_cols=164 Identities=35% Similarity=0.610 Sum_probs=143.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKELARKIAYVPQ---------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHHHHHHhHHHH----------
Confidence 45999999999999999999999999999999999987 4569999999998742 34456888887
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+++.+||.+..++.+ +.||||||||++|||+|+.+|++++|||||+||
T Consensus 81 ---------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~L 128 (180)
T cd03214 81 ---------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHL 128 (180)
T ss_pred ---------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 556677766555543 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
|+.++..+.+.|++++++ |+|+|+++|++. .+.++||++++|++|++++.|
T Consensus 129 D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 129 DIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999876 899999999976 467899999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=342.49 Aligned_cols=215 Identities=28% Similarity=0.416 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++++++.|+ ...+++|||+++++||+.||+|.||||||||+|+|.|.+.
T Consensus 4 ~l~~~~itK~f~---------------------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~- 55 (501)
T COG3845 4 ALEMRGITKRFP---------------------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ- 55 (501)
T ss_pred eEEEeccEEEcC---------------------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-
Confidence 478889988764 2568999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCC-----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYN-----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~-----~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
|++|+|.+||+++. +..+..||+|+|+..|+|++||.||+.++.........+.++.+++++++.++.||+-..|
T Consensus 56 P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~ 135 (501)
T COG3845 56 PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD 135 (501)
T ss_pred CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc
Confidence 56999999999874 2467789999999999999999999999865432234577788899999999999998888
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+|+ .||-||||||.|-++|.++|++|||||||+-|-|...+++++.|++++++|+|||++||... |+.++|||
T Consensus 136 ~~V~-----dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDr 209 (501)
T COG3845 136 AKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADR 209 (501)
T ss_pred ceee-----cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCe
Confidence 8876 79999999999999999999999999999999999999999999999999999999999975 68999999
Q ss_pred EEEEeCCEEEEecC
Q 044602 304 LLLISEGYPVYYGK 317 (674)
Q Consensus 304 v~~L~~G~iv~~G~ 317 (674)
+.||.+|+++..-+
T Consensus 210 vTVLR~Gkvvgt~~ 223 (501)
T COG3845 210 VTVLRRGKVVGTVD 223 (501)
T ss_pred eEEEeCCeEEeeec
Confidence 99999999876655
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=397.66 Aligned_cols=213 Identities=24% Similarity=0.417 Sum_probs=174.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+.. ..+++|+|+||++++||++||+||||||||||+++|+|++ +
T Consensus 382 ~I~~~nVsf~Y~~~------------------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~ 436 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------------------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-D 436 (1466)
T ss_pred cEEEEEEEEEcCCC------------------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-c
Confidence 69999999988521 1246999999999999999999999999999999999977 5
Q ss_pred CCccEEEE-CCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC----------CC-----C---------
Q 044602 149 DVKGNITY-NDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL----------PG-----N--------- 199 (674)
Q Consensus 149 ~~~G~I~~-~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~-----~--------- 199 (674)
+.+|+|++ +|+++.+ .+|++||||+|++.+|+. ||+|||.++..... +. .
T Consensus 437 p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 437 PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 56999999 4677642 468899999999999986 99999999742100 00 0
Q ss_pred ---------------C---------CHHHHHHHHHHHHHHcC-------CCccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 200 ---------------M---------NRQQKYARVQMILKELG-------LERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 200 ---------------~---------~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
. .....++++.++++.++ |++..||.+|+. ...||||||||++|||||
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAl 594 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAI 594 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHH
Confidence 0 00012244566666654 466778888865 457999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++. .+.||+|++|++|
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999999999999999999975 58999999999864 4789999999986
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=365.16 Aligned_cols=203 Identities=24% Similarity=0.303 Sum_probs=171.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+. .+++|+|+|+++++||.+||+||||||||||+++|+|.+
T Consensus 321 ~~i~~~~v~f~y~~--------------------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~- 373 (547)
T PRK10522 321 QTLELRNVTFAYQD--------------------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY- 373 (547)
T ss_pred ceEEEEEEEEEeCC--------------------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 36999999998851 135899999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
++.+|+|.+||+++++ .++++++||+|++.+|++ |++|| + . ...++.+++.++.+++.+..+
T Consensus 374 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 374 QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred CCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhh
Confidence 5569999999999863 578899999999999987 88887 1 0 122346778899998875433
Q ss_pred ccccCC--ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhh
Q 044602 224 TRVGGG--FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 224 ~~vg~~--~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 300 (674)
. ++. ....||||||||++||||++++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.
T Consensus 440 ~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~ 515 (547)
T PRK10522 440 L--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIH 515 (547)
T ss_pred c--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHh
Confidence 2 221 1247999999999999999999999999999999999999999999976644 5899999999985 4678
Q ss_pred cCEEEEEeCCEEEEe
Q 044602 301 FDKLLLISEGYPVYY 315 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~ 315 (674)
||+|++|++|++++.
T Consensus 516 ~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 516 ADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEECCEEEEe
Confidence 999999999999876
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=327.85 Aligned_cols=189 Identities=32% Similarity=0.486 Sum_probs=153.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++| .++|++|++.+++. ||+||+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g---------~i~yv~q~~~l~~~-tv~enl 118 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSG---------RISFSSQFSWIMPG-TIKENI 118 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECC---------EEEEEeCccccccc-CHHHHh
Confidence 45899999999999999999999999999999999987 45699999988 39999999988886 999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.++... .. .++.+.++.+++.+ ..++.++ ..+..||||||||++|||+|+.+|++|||||||
T Consensus 119 ~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 119 IFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred hccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 875311 11 11223333333322 2233332 234689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVL-QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999865 5554 48999999999864 4 679999999999999999998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=360.10 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=172.2
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQL 182 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~l 182 (674)
+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 699999999999999999999999999999999987 4569999999998742 2356799999984 488889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
||.||+.................+++++++++.+||+ +..+++++ +|||||||||+|||||+.+|++|||||||
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 9999986431111110111223345688999999997 66777654 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999888999999999975 57889999999999999999977654
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=317.83 Aligned_cols=179 Identities=27% Similarity=0.485 Sum_probs=144.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++| +++|++|++.+++ .|++||+
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g---------~i~~~~q~~~l~~-~t~~enl 86 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPG---------SIAYVSQEPWIQN-GTIRENI 86 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcC---------EEEEEecCchhcc-CcHHHHh
Confidence 35999999999999999999999999999999999987 45699999998 5999999999886 5999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.+.... ..+ ...+.++.+++.+ ..++.+. ..+.+||||||||++|||+|+.+|++++|||||
T Consensus 87 ~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 87 LFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred ccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 875321 111 1222233333221 1222222 235689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 262 SGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 262 sgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+|||+.+++.+.+ .++++.++|+|||++||++.. +.. +|++++|++|+
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 9999999999998 567776668999999999754 455 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=312.14 Aligned_cols=179 Identities=23% Similarity=0.324 Sum_probs=151.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.++ ++|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++....++.++|++|++.+++.+||.||+.
T Consensus 15 ~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 15 NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHH
Confidence 345 599999999999999999999999999999987 456999999999875432456999999988878889999998
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
+..... . ..++++++++.+++.+..++.+ +.||||||||++||||++.+|++++|||||+|||+.++
T Consensus 93 ~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 93 FWSEIY-----N---SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred HHHHhc-----c---cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 864322 1 1346778899999987777654 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
..+.+.|++..++|+|+|+++|++.. .+.+|-+.
T Consensus 160 ~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 160 DLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 99999998777779999999999864 45566553
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=362.45 Aligned_cols=220 Identities=30% Similarity=0.481 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+.. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+. +
T Consensus 4 ~l~~~nl~~~y~~~-----------------------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~ 59 (648)
T PRK10535 4 LLELKDIRRSYPSG-----------------------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-K 59 (648)
T ss_pred EEEEeeEEEEeCCC-----------------------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 58999999988521 11246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----h----ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP----A----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~----~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.+||+++.. + .++.++|++|++.+++++|+.||+.+..... ....++.++++.++++.+||.+
T Consensus 60 ~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~ 136 (648)
T PRK10535 60 PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLED 136 (648)
T ss_pred CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChh
Confidence 569999999998753 2 1468999999999999999999999865332 2244556678899999999988
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..|+.+ ..||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++.. .+.
T Consensus 137 ~~~~~~-----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~ 209 (648)
T PRK10535 137 RVEYQP-----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQ 209 (648)
T ss_pred hhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHh
Confidence 777765 4899999999999999999999999999999999999999999999998779999999999753 457
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|++++..
T Consensus 210 ~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 210 AERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEEECCEEEeecCccccc
Confidence 9999999999999999998775
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=360.85 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=172.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.+. ...+++|+|+|+++++||++||+||||||||||+++|+|.+
T Consensus 336 ~~i~~~~v~f~y~~~~----------------------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~- 392 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE----------------------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY- 392 (555)
T ss_pred ceEEEEEEEEEeCCCC----------------------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-
Confidence 4699999999986310 01245999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
++.+|+|.+||.++++ .+++.++||+||+.+|++ |+++|+. +...+++++++++.+++.+..+
T Consensus 393 ~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~ 459 (555)
T TIGR01194 393 IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNAQQYLQRLEIADKVK 459 (555)
T ss_pred CCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHHHHHHHHcCCchhhc
Confidence 5569999999999863 578899999999999987 8998841 1123445778889888765443
Q ss_pred ccc-cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEecCCchHHHhhc
Q 044602 224 TRV-GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ-KVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 224 ~~v-g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
... |-.....||||||||++||||++.+|+||+|||||++||+.++..+.+.+. .+..+|+|+|+++|+++ ..+.|
T Consensus 460 ~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~ 537 (555)
T TIGR01194 460 IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELA 537 (555)
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhC
Confidence 221 111125799999999999999999999999999999999999999998664 45556899999999985 36789
Q ss_pred CEEEEEeCCEEEEe
Q 044602 302 DKLLLISEGYPVYY 315 (674)
Q Consensus 302 D~v~~L~~G~iv~~ 315 (674)
|+|++|++|++++.
T Consensus 538 d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 538 DQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=317.61 Aligned_cols=188 Identities=23% Similarity=0.413 Sum_probs=151.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~ 180 (674)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence 569999999999999999999999999999999999874 569999999987632 23467999999998885
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCccCccCHHHHHHHHHHHHHhhCCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-------HTRVGGGFIKGISGGERKRTSIGYEILVDPS 253 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ 253 (674)
.|++||+.+... ... +..+++++.++|.+.. ++... ..+..||||||||++|||+|+.+|+
T Consensus 93 -~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 93 -ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred -ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 699999987531 111 1223445555554321 12222 2356899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 254 LLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 254 illLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+|||||||+|||+.++..+++ .++.+.+.|+|+|++||++.. + ..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 999999999999999999998 677776668999999999864 4 5699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=306.46 Aligned_cols=152 Identities=37% Similarity=0.656 Sum_probs=138.3
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++ .|+.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 58999999999999999999999999999999999874 569999999998742 35678999999998887 4999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+ ||||||||++|||+|+.+|++|+|||||+|||
T Consensus 94 e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD 128 (171)
T cd03228 94 ENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALD 128 (171)
T ss_pred HHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 886 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+.++..+.+.|+++.+ ++|+|++||++.. +.. ||++++|++|+
T Consensus 129 ~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 129 PETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 9999999999999864 7999999999864 555 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=301.64 Aligned_cols=145 Identities=31% Similarity=0.502 Sum_probs=132.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q--------- 82 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFASPRDARRAGIAMVYQ--------- 82 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---------
Confidence 45999999999999999999999999999999999987 4569999999998752 24567899888
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
||||||||++|||||+.+|++++|||||+|
T Consensus 83 --------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~ 112 (163)
T cd03216 83 --------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAA 112 (163)
T ss_pred --------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEE
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++++
T Consensus 113 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 113 LTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999877999999999975 4678899999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=351.20 Aligned_cols=204 Identities=21% Similarity=0.389 Sum_probs=168.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~ 180 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.++|++|++ .+++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 458999999999999999999999999999999999874 469999999988742 2356799999985 4788
Q ss_pred CCCHHHHHHHHHh--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 181 QLTVEETLVFAAF--L-RLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 181 ~lTV~e~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
.+|+.+|..+... . .......+....+.++++++.+++. +..++.+ .+|||||||||+|||+|+.+|+|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8898887433210 0 0000012233456788899999995 4556655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChh
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
|||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999888999999999975 578899999999999999877553
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=313.35 Aligned_cols=194 Identities=18% Similarity=0.228 Sum_probs=160.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE-ECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT-YNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~-~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
+|+||||++++||+++|+||||||||||+|+|+|.. ++.+|+|. ++|.... +.|++.+++.+|++||+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~---------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALP---------LGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceec---------cccccccCCcCcHHHHHH
Confidence 799999999999999999999999999999999987 45699997 7775431 335667899999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
+..... ....++. .+.+.+.++|++..++.++ +||||||||++|||||+.+|++++|||||++||+.++
T Consensus 72 ~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 72 MMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 876543 1222222 2334456778777777664 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
..+.+.+.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.+++.++++.
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 578999999986 46789999999999999999999999877654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=300.66 Aligned_cols=150 Identities=33% Similarity=0.533 Sum_probs=134.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|. +.++|++|++.++ ..||+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~nl 84 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTLREQL 84 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCC-------ceEEEECCCCccc-cccHHHHh
Confidence 458999999999999999999999999999999999874 56999999873 6799999998766 46999998
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+. . +++||||||||++|||||+.+|++++|||||+|||+.+
T Consensus 85 ~~~---------------------------------~-----~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~ 126 (166)
T cd03223 85 IYP---------------------------------W-----DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126 (166)
T ss_pred hcc---------------------------------C-----CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH
Confidence 652 1 24799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 127 ~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 127 EDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999876 689999999975 35789999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=351.33 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=173.8
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|. .+++|+|+||++++||+++|+||||||||||||+|+|.++ +
T Consensus 2 l~i~~ls~~~~---------------------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p 53 (530)
T PRK15064 2 LSTANITMQFG---------------------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-P 53 (530)
T ss_pred EEEEEEEEEeC---------------------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 68899998763 2469999999999999999999999999999999999874 4
Q ss_pred CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-h-----------cCCC---C--------------C
Q 044602 150 VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF-L-----------RLPG---N--------------M 200 (674)
Q Consensus 150 ~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~-~-----------~~~~---~--------------~ 200 (674)
.+|+|.++|. +.+||++|++.+++.+||+||+.++.. . ..+. . .
T Consensus 54 ~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (530)
T PRK15064 54 SAGNVSLDPN-------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEM 126 (530)
T ss_pred CCceEEecCC-------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhc
Confidence 6999999873 459999999989999999999987531 0 0000 0 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044602 201 NRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l 279 (674)
...+..++++++++.+||.+.. +..+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 127 ~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~- 200 (530)
T PRK15064 127 DGYTAEARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE- 200 (530)
T ss_pred CchhHHHHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-
Confidence 0012245788999999997643 3333 48999999999999999999999999999999999999999999863
Q ss_pred HhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE-EEecChhHHHH
Q 044602 280 AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP-VYYGKARESME 323 (674)
Q Consensus 280 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~~ 323 (674)
.|.|||++||++. .+.+.||++++|++|++ ++.|++++..+
T Consensus 201 --~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 201 --RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred --CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 5899999999975 47889999999999999 58999887653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=389.41 Aligned_cols=257 Identities=20% Similarity=0.318 Sum_probs=196.6
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc---cC-CCCceeEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE---KD-RPLPIFLK 71 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~---~~-~~~~~~l~ 71 (674)
..++|++.+.+|..+.|.++..+..... .++.. ++.+.++... .. ......++
T Consensus 539 ~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~--~~L~~~~~~~~~~~~~~~~~~~I~ 616 (1495)
T PLN03232 539 LVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIE--ELLLSEERILAQNPPLQPGAPAIS 616 (1495)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCccccccccCCcCCCCCcEE
Confidence 3577888888899999988887544321 00100 2222111100 00 11123589
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++|++|+|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.++ +.+
T Consensus 617 ~~~vsF~y~~~------------------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~ 671 (1495)
T PLN03232 617 IKNGYFSWDSK------------------------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAE 671 (1495)
T ss_pred EEeeEEEcCCC------------------------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccC
Confidence 99999988521 12568999999999999999999999999999999999874 457
Q ss_pred cEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccc
Q 044602 152 GNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-------GLERCRHT 224 (674)
Q Consensus 152 G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~ 224 (674)
|.+. .+++.++||+|++.+|++ ||+|||.|+.. .++ ++.+++++.. .|++..+|
T Consensus 672 G~i~--------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T 732 (1495)
T PLN03232 672 TSSV--------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLT 732 (1495)
T ss_pred CCEE--------EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCc
Confidence 7663 257789999999999998 99999999741 122 2233333333 35778899
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.||+++. +||||||||++||||++++|+|++||||||+||+.++..+.+. ++.+. +|+|+|++||+++. .+.||+
T Consensus 733 ~IGe~G~-~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~--l~~aD~ 808 (1495)
T PLN03232 733 EIGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHF--LPLMDR 808 (1495)
T ss_pred eecCCCc-ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhh--HHhCCE
Confidence 9998765 6999999999999999999999999999999999999988765 55443 58999999999864 678999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++|+.+
T Consensus 809 Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 809 IILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999863
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=352.47 Aligned_cols=212 Identities=27% Similarity=0.403 Sum_probs=174.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|.. .+.+|+|+||++++||+++|+||||||||||||+|+|.+
T Consensus 4 ~~~l~i~~l~~~y~~--------------------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 4 QYIYTMNRVSKVVPP--------------------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred cEEEEEeeEEEEeCC--------------------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456999999997731 256999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh---------------cCCC-CCC---------
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL---------------RLPG-NMN--------- 201 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~---------------~~~~-~~~--------- 201 (674)
+ +.+|+|.+++ ...+|||+|++.+++.+||.||+.++... ..+. ...
T Consensus 58 ~-p~~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (556)
T PRK11819 58 K-EFEGEARPAP-------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGEL 129 (556)
T ss_pred C-CCCceEEecC-------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 4 5699999975 24699999999999999999999875320 0000 000
Q ss_pred --------HHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 044602 202 --------RQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273 (674)
Q Consensus 202 --------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~ 273 (674)
..+..++++++++.+||.. .++++ .+|||||||||+|||+|+.+|++|||||||++||+.++..+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~ 203 (556)
T PRK11819 130 QEIIDAADAWDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE 203 (556)
T ss_pred HHHHHhcCccchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH
Confidence 0012356788999999964 56655 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHH
Q 044602 274 QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESM 322 (674)
Q Consensus 274 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 322 (674)
+.|+++. .|||++||++. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 204 ~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 204 QFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 9998862 59999999975 577899999999999986 889887653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=349.18 Aligned_cols=202 Identities=22% Similarity=0.380 Sum_probs=163.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCC--C
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLP--Q 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~--~ 181 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+++.+|+|.++|+++.. ..++.+||++|++.++. .
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 4589999999999999999999999999999999997633258999999986531 24568999999976543 3
Q ss_pred CCHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 182 LTVEETLVFAAFL--RLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 182 lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
.|+.+++.++... ....... .+.+++++++++.+||.+ ..++++ .+|||||||||+|||||+.+|++||||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLD 426 (490)
T PRK10938 353 TSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILD 426 (490)
T ss_pred CcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4777776544211 1111112 233457889999999987 677665 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecCCchHHHh-hcCEEEEEeCCEEEEecC
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAG-RTVITTIHQPSSRMFH-MFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~ 317 (674)
|||+|||+.++..+.+.|++++++| .|||++||++.. +.+ .||++++|++|++++.-.
T Consensus 427 EPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 427 EPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999998775 579999999764 555 589999999999887643
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=314.36 Aligned_cols=189 Identities=24% Similarity=0.269 Sum_probs=156.3
Q ss_pred ceeeeEEEEe-----CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 044602 111 ILKGITGSIC-----PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 111 iL~~vs~~i~-----~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.++|++++++ +||+++|+||||||||||+++|+|.. ++.+|+|.++|. .++|++|+...++.+||+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD--------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCc--------eEEEecccccCCCCCCHH
Confidence 5667777765 79999999999999999999999987 456999999985 599999998777778999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|++.+...... . .....+++++.++|.+..++.+ .+|||||||||+||++|+.+|++++|||||++||
T Consensus 80 e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 80 DLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99976532110 1 1124578899999987777665 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEE--EecChhHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPV--YYGKARES 321 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~~ 321 (674)
+.++..+.+.|++++++ |+|||++||++. .+..+||++++|+++..+ ..+++.++
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999999999999764 899999999975 477799999999765433 44555553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=307.21 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=183.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+.+++ +|+||+|+|.+|+|||-.+|+|||||||||||++++|..
T Consensus 29 ~~li~l~~v~v~r~---------------------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 29 EPLIELKNVSVRRN---------------------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cceEEecceEEEEC---------------------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 34589999998663 478999999999999999999999999999999999977
Q ss_pred CCCCccEEEECCEeCC-----hhccccEEEEccC--CCCCCCCCHHHHHHHHHh--hcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 147 TDDVKGNITYNDIPYN-----PALKRRIGFVTQD--DVLLPQLTVEETLVFAAF--LRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~-----~~~~~~igyv~Q~--~~l~~~lTV~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
++ .+|.+.+.|+... .++|++||+|.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|
T Consensus 82 ~p-ssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g 160 (257)
T COG1119 82 PP-SSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160 (257)
T ss_pred CC-CCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcc
Confidence 54 5999999998864 3689999999754 344556688887653322 111221234566778999999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEecCCch
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA--GRTVITTIHQPSS 295 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~ 295 (674)
+.+.+|+..+ .||-||||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||++.
T Consensus 161 ~~~la~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e- 234 (257)
T COG1119 161 AKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE- 234 (257)
T ss_pred hhhhccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-
Confidence 9999998876 89999999999999999999999999999999999999999999999875 799999999975
Q ss_pred HHHhhcCEEEEEeCCEEEEecC
Q 044602 296 RMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
++-..+++++++++|+++++|.
T Consensus 235 Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 235 EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred hcccccceEEEeeCCceeeccc
Confidence 6888999999999999999884
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=385.48 Aligned_cols=256 Identities=18% Similarity=0.325 Sum_probs=196.6
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcc--ccC--CCCceeEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSI--EKD--RPLPIFLK 71 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~~--~~~~~~l~ 71 (674)
..++|++.+..|..+.|..+..+..... .++.. ++.+.++.. ... ......++
T Consensus 539 ~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~--~~L~~~e~~~~~~~~~~~~~~~I~ 616 (1622)
T PLN03130 539 VVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLE--ELLLAEERVLLPNPPLEPGLPAIS 616 (1622)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCcccccccCCcccCCCCceE
Confidence 5577888888999999887765533211 01100 222211110 000 11123599
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++|++|+|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.++ +.+
T Consensus 617 ~~nvsf~y~~~------------------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~ 671 (1622)
T PLN03130 617 IKNGYFSWDSK------------------------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRS 671 (1622)
T ss_pred EEeeEEEccCC------------------------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCC
Confidence 99999988521 12568999999999999999999999999999999999874 568
Q ss_pred -cEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 044602 152 -GNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCRH 223 (674)
Q Consensus 152 -G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 223 (674)
|+|.+ ++.|+||+|++.+|++ ||+|||.|+.. .++ ++.+++++..+ |+++.+
T Consensus 672 GG~I~l---------~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~ 731 (1622)
T PLN03130 672 DASVVI---------RGTVAYVPQVSWIFNA-TVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDL 731 (1622)
T ss_pred CceEEE---------cCeEEEEcCccccCCC-CHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCccc
Confidence 89974 5679999999999997 99999999742 122 23344444433 467789
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
|.||+++. .||||||||++||||+.++|+|++||||||+||+++++.+.+ .++.+. +|+|+|++||+++ ....+|
T Consensus 732 T~IGe~G~-~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD 807 (1622)
T PLN03130 732 TEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVD 807 (1622)
T ss_pred ccccCCCC-CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCC
Confidence 99998765 699999999999999999999999999999999999998865 566554 5899999999985 467899
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++|+.+
T Consensus 808 ~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 808 RIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999863
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=318.99 Aligned_cols=226 Identities=25% Similarity=0.401 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++..+... .+...++++|||++++||.+||+|.||||||-..+.+.|+++.
T Consensus 6 lL~v~nLsV~f~~~-----------------------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 6 LLSIRNLSVAFHQE-----------------------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred ceeeeccEEEEecC-----------------------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 38899999887643 2346799999999999999999999999999999999998863
Q ss_pred ----CCccEEEECCEeCC---h-hc---c-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 149 ----DVKGNITYNDIPYN---P-AL---K-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~---~-~~---~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
..+|+|.++|+++- + .+ | .+|+++||+| .|-|-.|+.+.+.-..++. .++++++.++++.++|+
T Consensus 63 ~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~ 140 (534)
T COG4172 63 PAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLE 140 (534)
T ss_pred CcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHH
Confidence 24799999999863 2 23 3 2799999997 4777778888877665543 45778888999999999
Q ss_pred HcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCC
Q 044602 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQP 293 (674)
Q Consensus 215 ~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 293 (674)
.+|+++-..+. +.++++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++|.++ |+.++++|||+
T Consensus 141 ~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 141 LVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred HcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 99998755432 3688999999999999999999999999999999999999999999999999875 99999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. -+.+++|||.||.+|++++.|+.+++.
T Consensus 219 ~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 219 G-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred H-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 6 478899999999999999999998875
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=348.75 Aligned_cols=203 Identities=26% Similarity=0.361 Sum_probs=171.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|.++
T Consensus 318 ~~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 318 NALEVENLTKGFD---------------------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred ceEEEEeeEEeeC---------------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3588999988763 2458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHT 224 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 224 (674)
+.+|+|.++|. +.+||++|++. +++.+||.||+.+.. . . . ...++++++++.+|+. +..++
T Consensus 371 -p~~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~~~~~~--~-~---~--~~~~~~~~~l~~~~l~~~~~~~ 434 (530)
T PRK15064 371 -PDSGTVKWSEN-------ANIGYYAQDHAYDFENDLTLFDWMSQWR--Q-E---G--DDEQAVRGTLGRLLFSQDDIKK 434 (530)
T ss_pred -CCCeEEEECCc-------eEEEEEcccccccCCCCCcHHHHHHHhc--c-C---C--ccHHHHHHHHHHcCCChhHhcC
Confidence 56999999873 46999999863 566789999986421 0 0 1 1235678899999994 56666
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++
T Consensus 435 ~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i 505 (530)
T PRK15064 435 SV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRI 505 (530)
T ss_pred cc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEE
Confidence 65 489999999999999999999999999999999999999999999876 359999999975 577889999
Q ss_pred EEEeCCEEE-EecChhHHH
Q 044602 305 LLISEGYPV-YYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv-~~G~~~~~~ 322 (674)
++|++|+++ +.|++++..
T Consensus 506 ~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 506 IEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEECCeEEEcCCCHHHHH
Confidence 999999998 889887754
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=348.49 Aligned_cols=211 Identities=27% Similarity=0.395 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. .+++|+|+||++++||+++|+|||||||||||++|+|..+
T Consensus 4 ~i~~~nls~~~~~--------------------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~- 56 (552)
T TIGR03719 4 IYTMNRVSKVVPP--------------------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK- 56 (552)
T ss_pred EEEEeeEEEecCC--------------------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 5899999997731 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh-c--------C---CCCCCHH-------------
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL-R--------L---PGNMNRQ------------- 203 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~-~--------~---~~~~~~~------------- 203 (674)
+.+|+|.+++ +..+|||+|++.+++.+||.||+.++... + . ......+
T Consensus 57 p~~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (552)
T TIGR03719 57 EFNGEARPAP-------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQE 129 (552)
T ss_pred CCCceEEecC-------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 5699999975 24699999999999999999999875321 0 0 0000010
Q ss_pred --------HHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044602 204 --------QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275 (674)
Q Consensus 204 --------~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~ 275 (674)
....+++++++.+|++. .++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~ 203 (552)
T TIGR03719 130 IIDAADAWDLDRKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH 203 (552)
T ss_pred HHHhcCcchhHHHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH
Confidence 01235667788888853 45554 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHHH
Q 044602 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESME 323 (674)
Q Consensus 276 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 323 (674)
|+++ +.|||++||++. .+...||++++|++|+++ +.|+.++..+
T Consensus 204 L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 204 LQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9876 359999999975 577889999999999976 7898887644
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=307.83 Aligned_cols=193 Identities=26% Similarity=0.435 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccc-cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
.++.+||+..|+.... ..+. ...+++||||++++||+++|+|+||||||||-|+|.|+.
T Consensus 4 ll~v~~l~k~f~~~~~-------------------~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~- 63 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-------------------FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE- 63 (268)
T ss_pred eEEEeccEEEEecccc-------------------cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-
Confidence 4789999998875321 0011 246999999999999999999999999999999999877
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++++|+|+++|+++... . +++..+++.++|+.+||.... -
T Consensus 64 ~pt~G~i~f~g~~i~~~-~-----------------------------------~~~~~~~v~elL~~Vgl~~~~----~ 103 (268)
T COG4608 64 EPTSGEILFEGKDITKL-S-----------------------------------KEERRERVLELLEKVGLPEEF----L 103 (268)
T ss_pred CCCCceEEEcCcchhhc-c-----------------------------------hhHHHHHHHHHHHHhCCCHHH----h
Confidence 55799999999986431 1 345567899999999986522 2
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
++++++||||||||++|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ .+..++|||.+
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~V 182 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAV 182 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEE
Confidence 2467899999999999999999999999999999999999999999999999875 999999999976 57889999999
Q ss_pred EeCCEEEEecChhHHH
Q 044602 307 ISEGYPVYYGKARESM 322 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~ 322 (674)
|..|++|+.|+.+++.
T Consensus 183 My~G~iVE~g~~~~~~ 198 (268)
T COG4608 183 MYLGKIVEIGPTEEVF 198 (268)
T ss_pred EecCceeEecCHHHHh
Confidence 9999999999999885
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=304.56 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=182.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEc-cCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVT-QDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~-Q~~~l~~~lTV 184 (674)
..+.+|+||+|++|++++++|||||||||+||+|+|++.| .+|.|.++|.+.-. +.-+.+++|+ |...+.-.+.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 3589999999999999999999999999999999998854 69999999987532 4456788876 55666667778
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
.|.+....... +++.++-+++.+.+.+.++|+...+.++ +.||-|||.|+.||.+|+++|+||||||||-||
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 88877654443 4677888899999999999998888775 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHH
Q 044602 265 DSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
|..++..|.+.|++..+ ++.||+.+||+.+ ++.++||||++|+.|+++|.|+.+++.+-|.
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999876 4899999999986 5899999999999999999999999987664
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=341.66 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=168.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|..+
T Consensus 323 ~~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 375 (556)
T PRK11819 323 KVIEAENLSKSFG---------------------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred eEEEEEeEEEEEC---------------------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999988763 2469999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 225 (674)
+.+|+|.+++. ..+||++|++ .+++.+||.||+.++..... .... ...++++++.+|+.+ ..++.
T Consensus 376 -p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~ 442 (556)
T PRK11819 376 -PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK 442 (556)
T ss_pred -CCCeEEEECCc-------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc
Confidence 56999999542 2599999996 78888999999998643211 1111 123457899999964 45665
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.++||+++
T Consensus 443 ~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~ 513 (556)
T PRK11819 443 V-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHIL 513 (556)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEE
Confidence 5 4899999999999999999999999999999999999999999999872 4 8999999975 5788999999
Q ss_pred EEeC-CEEE-EecChhHH
Q 044602 306 LISE-GYPV-YYGKARES 321 (674)
Q Consensus 306 ~L~~-G~iv-~~G~~~~~ 321 (674)
+|++ |++. +.|+.++.
T Consensus 514 ~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 514 AFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred EEECCCeEEEecCCHHHH
Confidence 9985 7876 56766543
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=287.95 Aligned_cols=207 Identities=27% Similarity=0.412 Sum_probs=180.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC-EeCCh-----hccccEEEEccCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-IPYNP-----ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g-~~~~~-----~~~~~igyv~Q~~~l~~~ 181 (674)
.-.+|+|+||++.+||+-+|+|||||||||++++|+|.. ++.+|+++++| .++.. ..|..||-=||.|..|+.
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 356899999999999999999999999999999999976 55689999999 67652 246679999999999999
Q ss_pred CCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 182 LTVEETLVFAAFLRLPG-----NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+||+|||..+.....+- .-.+.+.+++++++|+..||.+.++...+ .||-||||++.|+.-++.+|++|+
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhccchhhhhhhheeeccCCcEEE
Confidence 99999999886432110 01224556789999999999999888765 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||++|+--+...+.-++|+.++. +++|+++-||+. .+.+++|+|.+|++|.+...|+.+++.
T Consensus 171 lDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 171 LDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred ecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999999999985 799999999975 588999999999999999999998873
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=339.31 Aligned_cols=204 Identities=23% Similarity=0.372 Sum_probs=168.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 321 ~~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 373 (552)
T TIGR03719 321 KVIEAENLSKGFG---------------------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373 (552)
T ss_pred eEEEEeeEEEEEC---------------------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3588999988763 2469999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 225 (674)
+.+|+|.+++. ..+||++|++ .+++.+||.||+.++.... ..... ..+++++++.+|+.+ ..++.
T Consensus 374 -p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~ 440 (552)
T TIGR03719 374 -PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKK 440 (552)
T ss_pred -CCCeEEEECCc-------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCc
Confidence 56999999542 2599999996 4788899999999864321 11111 224567899999964 45665
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++|||+. .+.++||+++
T Consensus 441 ~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~ 511 (552)
T TIGR03719 441 V-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHIL 511 (552)
T ss_pred h-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEE
Confidence 5 4899999999999999999999999999999999999999999999873 4 8999999975 5778999999
Q ss_pred EEeC-CEEE-EecChhH
Q 044602 306 LISE-GYPV-YYGKARE 320 (674)
Q Consensus 306 ~L~~-G~iv-~~G~~~~ 320 (674)
+|++ |+++ +.|+.++
T Consensus 512 ~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 512 AFEGDSHVEWFEGNYSE 528 (552)
T ss_pred EEECCCeEEEeCCCHHH
Confidence 9986 5876 5676654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.41 Aligned_cols=182 Identities=29% Similarity=0.366 Sum_probs=158.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++ ..++|++|+..+++.+||+||+.+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~~ 423 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPE---------LKISYKPQYIKPDYDGTVEDLLRS 423 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEe---------eeEEEecccccCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999884 569999986 159999999888888999999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
.... ... ...++++++.++|.+..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++.
T Consensus 424 ~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~ 490 (590)
T PRK13409 424 ITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490 (590)
T ss_pred Hhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 5321 111 1256889999999887777654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
.+.+.|++++++ |+|+|++|||+. .+..+|||+++|+ |++...|.
T Consensus 491 ~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 491 AVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 999999999874 899999999975 4778999999996 48777775
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=309.34 Aligned_cols=189 Identities=23% Similarity=0.378 Sum_probs=159.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE-----------ECCEeCCh---hcc---ccEEEE
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT-----------YNDIPYNP---ALK---RRIGFV 172 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~-----------~~g~~~~~---~~~---~~igyv 172 (674)
.+|+|+| .+++||+++|+||||||||||||+|+|.++ +++|+|. ++|+++.. ..+ ..++|+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 5899999 599999999999999999999999999874 5699996 78887643 122 247999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
+|+..+++. ++.+++.+.. ......+.+.++++.+||.+..++.+ ..||||||||++|||+|+.+|
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred cchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCC
Confidence 999888885 8888887642 12233467789999999987776654 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
++++|||||++||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++++.|
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999877999999999975 4677899999995 6666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=290.16 Aligned_cols=239 Identities=22% Similarity=0.300 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+..++...... .........+..... ......+|+||||++++||.++|+|+||||||||||+|+|.+ +
T Consensus 3 ~I~~~~V~k~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~ 78 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKS--YSLKKRLKGLAKGGR-KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-K 78 (249)
T ss_pred EEEeeceeEEEecchhhh--hhHHHHHHHHhcCCC-CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-C
Confidence 578999998887643110 000111111111111 234467999999999999999999999999999999999987 5
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
|++|+|.++|+-... +-- ...+-|.+|.+||+.+-..+. ++++++.+++++++++.-+|.+..|.+|
T Consensus 79 Pt~G~v~v~G~v~~l-i~l-------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv-- 145 (249)
T COG1134 79 PTSGKVKVTGKVAPL-IEL-------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV-- 145 (249)
T ss_pred CCCceEEEcceEehh-hhc-------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch--
Confidence 569999999974321 111 123456789999999876543 4678999999999999999999999987
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+.+|.||+-|+++|.|.-.+|+|||+||-.+--|+.-+++-.+.++++.++++|+|+++|++. .+.++|||+++|+
T Consensus 146 ---ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~ 221 (249)
T COG1134 146 ---KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE 221 (249)
T ss_pred ---hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe
Confidence 489999999999999999999999999999999999999999999999888899999999975 5899999999999
Q ss_pred CCEEEEecChhHHHHHHHhC
Q 044602 309 EGYPVYYGKARESMEYFSSL 328 (674)
Q Consensus 309 ~G~iv~~G~~~~~~~~f~~~ 328 (674)
+|++.+.|+++++.++|+..
T Consensus 222 ~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 222 HGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CCEEEEcCCHHHHHHHHHHh
Confidence 99999999999999988764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=339.15 Aligned_cols=189 Identities=26% Similarity=0.431 Sum_probs=159.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC--CCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD--VLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~--~l~~~lTV~e 186 (674)
+.+|+|+||+|++||+++|+||||||||||||+|+|.. ++++|+|.+++. ..+||++|+. .+.+..|+.+
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~ 396 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKG-------IKLGYFAQHQLEFLRADESPLQ 396 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCC-------EEEEEecCcchhhCCccchHHH
Confidence 56999999999999999999999999999999999987 456999999742 2599999974 4556678888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
++.-. . .....++++++|+.+++.. ..+++++ .|||||||||+||++|+.+|++|||||||+|||
T Consensus 397 ~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 397 HLARL---A------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred HHHHh---C------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 76421 1 1123456889999999963 5666654 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHHH
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESME 323 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 323 (674)
+.+...+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 463 ~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999987 34 9999999975 578899999999999997 8899887643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=342.52 Aligned_cols=198 Identities=21% Similarity=0.342 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.++. ++++|+|+|+++++||+++|+||||||||||+|+|+|+. +
T Consensus 451 ~i~~~nv~~~~~~--------------------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~ 503 (659)
T TIGR00954 451 GIKFENIPLVTPN--------------------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-P 503 (659)
T ss_pred eEEEEeeEEECCC--------------------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 5899999986631 246999999999999999999999999999999999987 5
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG- 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg- 227 (674)
+.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....+++++++++.+++.+..+++.|
T Consensus 504 ~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 573 (659)
T TIGR00954 504 VYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGW 573 (659)
T ss_pred CCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCc
Confidence 5689998864 5679999999999988 9999998864221000 001123457788999998765443221
Q ss_pred ---CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 228 ---GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 228 ---~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
......||||||||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++. .+.||++
T Consensus 574 ~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~i 648 (659)
T TIGR00954 574 SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYL 648 (659)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEE
Confidence 012458999999999999999999999999999999999999999998876 38999999999864 5789999
Q ss_pred EEEe
Q 044602 305 LLIS 308 (674)
Q Consensus 305 ~~L~ 308 (674)
++|+
T Consensus 649 l~l~ 652 (659)
T TIGR00954 649 LYMD 652 (659)
T ss_pred EEEe
Confidence 9997
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=285.22 Aligned_cols=203 Identities=27% Similarity=0.415 Sum_probs=169.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--h--ccccEEEEccCC--CCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--A--LKRRIGFVTQDD--VLLP 180 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~--~~~~igyv~Q~~--~l~~ 180 (674)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.++|++++. . ....++-|+||| ..++
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 35789999999999999999999999999999999999884 569999999999874 1 223578899997 4799
Q ss_pred CCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEE
Q 044602 181 QLTVEETLVFAAFLRLPGNMNR---QQKYARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLL 255 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~il 255 (674)
.|||.||+.++..--..+.... ....+...+-++.+ ||++..++++| -|||||||-++++.|-++.|+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEE
Confidence 9999999998764321222222 22223334455554 67888888887 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 256 LLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 256 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+|||=|++|||.++..+++.-.++.++ +.|.+++||...+ ...+-+|.++|++|+||.+-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999988764 7899999999764 77899999999999999764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=283.90 Aligned_cols=157 Identities=26% Similarity=0.381 Sum_probs=132.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+++|+|+||++++||+++|+||||||||||||++.+ .+|+|.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~-~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLP-KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccc-ccccccEEEEhH-------------
Confidence 4679999999999999999999999999999999863 389999988732 222345888877
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD--PSLLLLDEPTSGL 264 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~--P~illLDEPTsgL 264 (674)
.++++.++|.. ..+++ ++.||||||||++|||+|+.+ |++++|||||++|
T Consensus 68 ----------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ----------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ----------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 24567788865 35554 358999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+.++..+.+.|+++++.|+|||++||++.. .+.||++++|++|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~--~~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDV--LSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEECCCCC
Confidence 9999999999999998779999999999754 467999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=336.55 Aligned_cols=191 Identities=28% Similarity=0.404 Sum_probs=159.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~ 187 (674)
+++|+|+||+|++||+++|+||||||||||||+|+|.+ ++.+|+|.+ |.++ .+||++|+. .+++.+||.||
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~-~~~~------~i~y~~q~~~~l~~~~tv~e~ 403 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHC-GTKL------EVAYFDQHRAELDPEKTVMDN 403 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEE-CCCc------EEEEEeCcccccCCCCCHHHH
Confidence 46999999999999999999999999999999999987 456999998 4332 599999985 68899999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
+.++.... ... .....+.++++.+++. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+
T Consensus 404 l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 404 LAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred HHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 98753211 011 1234678899999986 45666654 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe-CCEEE-EecChhHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS-EGYPV-YYGKARES 321 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv-~~G~~~~~ 321 (674)
.+...+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++. |.|+.++-
T Consensus 474 ~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 474 ETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999876 459999999965 5778999999998 89986 46776654
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=351.37 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=183.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+|++.+|+. +...||||||++|+|||.+||+|+.|||||||.++|-.+.
T Consensus 1137 G~I~f~~~~~RYrp-------------------------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~- 1190 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-------------------------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV- 1190 (1381)
T ss_pred CeEEEEEeEEEeCC-------------------------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-
Confidence 57999999999863 2356999999999999999999999999999999999655
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
++.+|+|.+||.++.+ ++|++++.+||||.+|.+ |||.||.=.... .+..+.++-.+...++.++ .++...|
T Consensus 1191 e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld 1266 (1381)
T KOG0054|consen 1191 EPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLD 1266 (1381)
T ss_pred CccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCC
Confidence 5569999999999975 789999999999999999 999999632110 0001111111222333444 3456688
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.|.+.+ .++|-||||.+|+||||+++.+||+|||+|++.|+++-..|.+.|++-- +++|||.+.|+..+ +. -+||
T Consensus 1267 ~~v~egG-~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vm-d~Dr 1342 (1381)
T KOG0054|consen 1267 SEVSEGG-ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VM-DSDR 1342 (1381)
T ss_pred ceecCCC-ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hh-hcCe
Confidence 8887655 4699999999999999999999999999999999999999999999854 38999999999987 33 4899
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+||++|+++++|+|+++++
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEEeeCCeEeecCChHHHHh
Confidence 99999999999999999974
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=274.02 Aligned_cols=132 Identities=37% Similarity=0.612 Sum_probs=122.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~-------~~i~~~~~-------------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGST-------VKIGYFEQ-------------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCe-------EEEEEEcc--------------
Confidence 35899999999999999999999999999999999987 456999999984 46999998
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
||+||+||++|||||+.+|++++|||||+|||+.+
T Consensus 71 ---------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 71 ---------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+..+.+.|+++ ++|+|+++|++. ++.++||++++|++|+
T Consensus 106 ~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 106 IEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999886 479999999975 4678899999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=364.55 Aligned_cols=209 Identities=23% Similarity=0.399 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++|+|+. +.+++|+|+|+++++||+++|+||||||||||+++|+|.+ +
T Consensus 636 ~i~~~~~~~~~~~-------------------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~ 689 (1522)
T TIGR00957 636 SITVHNATFTWAR-------------------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-D 689 (1522)
T ss_pred cEEEEEeEEEcCC-------------------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-c
Confidence 6999999998742 1246899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH---HHHHHcC-CCccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ---MILKELG-LERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~---~~l~~lg-L~~~~~~ 224 (674)
+.+|+|.++| .++||+|++.+++. ||+||+.|+.. .++++. +++. ++.+.++ +++..+|
T Consensus 690 ~~~G~i~~~g---------~i~yv~Q~~~l~~~-Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t 752 (1522)
T TIGR00957 690 KVEGHVHMKG---------SVAYVPQQAWIQND-SLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRT 752 (1522)
T ss_pred cCCcEEEECC---------EEEEEcCCccccCC-cHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCc
Confidence 5699999987 49999999998875 99999998732 122211 1221 1223333 3556678
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEecCCchHHHhhcC
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA--KAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+|+.+ .+||||||||++||||++.+|+|++||||||+||+.++..+.+.+.+.. .+|+|+|++||++.. ...||
T Consensus 753 ~ig~~g-~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D 829 (1522)
T TIGR00957 753 EIGEKG-VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVD 829 (1522)
T ss_pred eecCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCC
Confidence 888654 5799999999999999999999999999999999999999999986532 348999999999864 45699
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++++.+
T Consensus 830 ~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 830 VIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999998863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=334.34 Aligned_cols=207 Identities=24% Similarity=0.390 Sum_probs=166.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|+ +.+.+|+|+||++++||+++|+||||||||||||+|+|.++
T Consensus 507 ~~L~~~~ls~~y~--------------------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~ 560 (718)
T PLN03073 507 PIISFSDASFGYP--------------------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560 (718)
T ss_pred ceEEEEeeEEEeC--------------------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999998773 12458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRV 226 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 226 (674)
+.+|+|.+++ +..+||++|++ .+.+++.++..+......+ ... .++++++++.+|+.+ ..++++
T Consensus 561 -p~~G~I~~~~-------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~ 625 (718)
T PLN03073 561 -PSSGTVFRSA-------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM 625 (718)
T ss_pred -CCCceEEECC-------ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc
Confidence 5699999875 24699999985 3445676664432211111 111 346788999999974 455554
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
..|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|++. .| |||++|||+. .+..+||++++
T Consensus 626 -----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~ 696 (718)
T PLN03073 626 -----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWV 696 (718)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEE
Confidence 589999999999999999999999999999999999999998888765 34 9999999975 47789999999
Q ss_pred EeCCEEE-EecChhHHHHH
Q 044602 307 ISEGYPV-YYGKARESMEY 324 (674)
Q Consensus 307 L~~G~iv-~~G~~~~~~~~ 324 (674)
|++|+++ +.|+.++..++
T Consensus 697 l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 697 VSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred EECCEEEEeCCCHHHHHHH
Confidence 9999998 78888765443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=332.55 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=163.6
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|. .+.+|+||||+|++||++||+||||||||||||+|+|.. ++
T Consensus 2 i~i~nls~~~g---------------------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~p 53 (638)
T PRK10636 2 IVFSSLQIRRG---------------------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SA 53 (638)
T ss_pred EEEEEEEEEeC---------------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 67899998763 356999999999999999999999999999999999977 45
Q ss_pred CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-----------------------hcC-CCCCCHHHH
Q 044602 150 VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF-----------------------LRL-PGNMNRQQK 205 (674)
Q Consensus 150 ~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~ 205 (674)
++|+|.++|.. .++|++|++..+. .|+.+.+.-... +.. .......+.
T Consensus 54 d~G~I~~~~~~-------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (638)
T PRK10636 54 DGGSYTFPGNW-------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTI 125 (638)
T ss_pred CCceEEecCCC-------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcch
Confidence 69999998742 3889988654332 366554431100 000 000001123
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 044602 206 YARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284 (674)
Q Consensus 206 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~ 284 (674)
..+++++++.+|+. +..+++++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~ 197 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QG 197 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CC
Confidence 45788999999997 46676664 89999999999999999999999999999999999999999998875 56
Q ss_pred EEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHH
Q 044602 285 TVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESM 322 (674)
Q Consensus 285 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 322 (674)
|||+||||.. .+.+.||++++|++|+++ |.|+.++..
T Consensus 198 tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 198 TLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred eEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 9999999975 577899999999999996 678776543
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=271.63 Aligned_cols=205 Identities=24% Similarity=0.444 Sum_probs=179.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---h-ccccEEEEccCC--CCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---A-LKRRIGFVTQDD--VLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~-~~~~igyv~Q~~--~l~~~l 182 (674)
..+.+.|||+++.|+.+||+|.||||||||.|+|+|.. +|++|+|++||+++.- . ..+.|-+++||+ .+-|.+
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence 45899999999999999999999999999999999988 5679999999998742 2 346799999997 477888
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.+.+-|....++ ..++..+++.+++.+.|+.+||- +.++- +++.||-||||||++||||+.+|+|++.||+.
T Consensus 105 ~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 105 RIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred hhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 888888776544 44567788889999999999984 44554 35689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+||...+.++.++.-+|.++ |.+-|.++.+.. .+..++|+|+||++|++|+.|++.+++
T Consensus 178 ~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhhh
Confidence 999999999999999999865 999999999875 588999999999999999999999874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=280.87 Aligned_cols=145 Identities=26% Similarity=0.438 Sum_probs=128.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
++.+++|+ +++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~--------i~~~~q~~~---------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGIT--------PVYKPQYID---------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEE--------EEEEcccCC----------
Confidence 35688884 8999999999999999999999999999874 569999999863 788888532
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
||||||||++|||+|+.+|++++|||||++||+.
T Consensus 72 ----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 72 ----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEEecCCchHHHhhcCEEEEEeCCEEEEe--cChh
Q 044602 268 SANKLIQVLQKVAKAG-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYY--GKAR 319 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~ 319 (674)
++..+.+.++++++++ +|+|++||++. .+.++||++++|+++-.++. |.|.
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999997765 99999999975 46778999999998866655 5543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=265.83 Aligned_cols=180 Identities=33% Similarity=0.518 Sum_probs=158.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCEeCCh--hccccEEEEccCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~l 182 (674)
++...|-|+|++|.+||++-||||||||||||+..+.|.+.+ ..+|++.+|++.++. .-+|++|+.+||+.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 346789999999999999999999999999999999998864 468999999999873 5688999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+|.+||.|+. |..+..+.+++.++..|++.||....++. +.+||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999874 44455557777889999999999877764 45899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH-HHHhCCcEEEEEecCCch
Q 044602 263 GLDSTSANKLIQVLQ-KVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 263 gLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~ 295 (674)
.||..-+.++.+..- ++...|..+|.+|||..+
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999774 455569999999999654
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=342.06 Aligned_cols=207 Identities=28% Similarity=0.482 Sum_probs=191.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+++|+.|++||+.+++|+|||||||++|+|.|.. ++++|++.++|.++.. ..++.+||+||+|.+++.+|.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 899999999999999999999999999999999977 5569999999998853 3678899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|++.+.++++ ++.+.+..+.++.+++.+||.+.+|+.++ .+|||+|||+++|.||+.+|++++|||||+|+|
T Consensus 659 EhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmD 730 (885)
T KOG0059|consen 659 EHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD 730 (885)
T ss_pred HHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC
Confidence 9999999887 45666777789999999999999999876 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
|.+++.+++.+++++++|+.+|.|||.. +|...+|||+.+|.+|++...|+++++...|..
T Consensus 731 P~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 731 PKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 9999999999999998888999999996 568999999999999999999999999877753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=326.76 Aligned_cols=207 Identities=26% Similarity=0.349 Sum_probs=161.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|.. +
T Consensus 3 ~l~i~~ls~~~~---------------------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~ 54 (635)
T PRK11147 3 LISIHGAWLSFS---------------------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-L 54 (635)
T ss_pred EEEEeeEEEEeC---------------------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-C
Confidence 478999998773 256999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH------------------------------hhc--C
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAA------------------------------FLR--L 196 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~------------------------------~~~--~ 196 (674)
+++|+|.++|.. .++|++|++......+|.+++..+. ... .
T Consensus 55 p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (635)
T PRK11147 55 LDDGRIIYEQDL-------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127 (635)
T ss_pred CCCeEEEeCCCC-------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 569999998631 2677777654333346666542110 000 0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L 276 (674)
. .....+...+++++++.+|+.. ++.+ .+|||||||||+||++|+.+|+||||||||++||+.+...+.+.|
T Consensus 128 ~-~~~~~~~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L 199 (635)
T PRK11147 128 D-HHNLWQLENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199 (635)
T ss_pred H-hcCcccHHHHHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHH
Confidence 0 0000123457889999999963 5544 489999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHH
Q 044602 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESM 322 (674)
Q Consensus 277 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 322 (674)
+++ +.|||++|||+. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 200 ~~~---~~tvlivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 200 KTF---QGSIIFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HhC---CCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 887 359999999975 477899999999999997 568876543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=352.27 Aligned_cols=192 Identities=28% Similarity=0.471 Sum_probs=160.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++. ||+|||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI 507 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNI 507 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECC---------EEEEEeCCCccCCc-cHHHHH
Confidence 579999999999999999999999999999999999874 5699999998 49999999999987 999999
Q ss_pred HHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYA-----RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
.|+... ......+ ..++.++.+ ++..+|.+|+. ...||||||||++||||++.+|+|+|||||||+
T Consensus 508 ~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 508 IFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred Hhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 997421 1111111 122233333 44556778865 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 264 LDSTSANKLIQV-LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 264 LD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+.++..+.+. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++.+
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999985 66665 48999999999864 45699999999999999999998853
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=267.79 Aligned_cols=142 Identities=41% Similarity=0.743 Sum_probs=129.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+++|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQ---------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEee----------
Confidence 358999999999999999999999999999999999875 469999999987643 34567999988
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
|||||+||++||++++.+|++++|||||+||
T Consensus 81 -------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|..++..+.+.++++.+.++|+++++|++. .+...||+++++++|+
T Consensus 112 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 999999999999998777899999999975 4677789999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.66 Aligned_cols=180 Identities=24% Similarity=0.389 Sum_probs=153.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE-----------ECCEeCCh---hc---cccEEE
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT-----------YNDIPYNP---AL---KRRIGF 171 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~-----------~~g~~~~~---~~---~~~igy 171 (674)
..+|++++ .+++||+++|+||||||||||+|+|+|.++ +.+|+|. ++|+++.. .+ +.++++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 35899999 999999999999999999999999999875 4599997 99988743 11 234566
Q ss_pred EccCC----CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH
Q 044602 172 VTQDD----VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE 247 (674)
Q Consensus 172 v~Q~~----~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a 247 (674)
.+|.. .++.. ||+|++... +..++++++++.+||.+..++.++ +|||||||||+||++
T Consensus 165 ~~q~~~~~p~~~~~-tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 165 KPQYVDLIPKVFKG-KVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred cccchhhhhhhhcc-hHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 66653 33443 999998631 123578899999999988887765 899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 248 ILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 248 L~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988 999999999975 578899999999864
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=266.12 Aligned_cols=184 Identities=27% Similarity=0.427 Sum_probs=162.3
Q ss_pred cccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCC
Q 044602 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDD 176 (674)
Q Consensus 100 ~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~ 176 (674)
+++++..+...++.++||++.+||.+-|.||||||||||||+|+|+..| .+|+|+++|.+++. ..++.+-|+-..+
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~ 84 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGEPIQNVRESYHQALLYLGHQP 84 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-CCCeEEecCCCCccchhhHHHHHHHhhccc
Confidence 4455556778899999999999999999999999999999999999854 59999999998864 3556788888888
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
.+=+.|||.|||.|-....-. .....+.+.++.+||....|.+++ .||-||||||+|||-++..+++.|
T Consensus 85 giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 85 GIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred cccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCcee
Confidence 889999999999998654321 123567899999999999999886 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
|||||++||.+....+-..+..-+.+|-.||.+||||..
T Consensus 154 LDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 154 LDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999888889999999999865
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=328.07 Aligned_cols=208 Identities=25% Similarity=0.421 Sum_probs=174.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++++|.+++...+ +..+.|+|||+++++|+++||+||-|||||+||.+|.|-+
T Consensus 516 ~~~i~i~~~sfsW~~~------------------------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE------------------------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred CceEEEeeeeEecCCC------------------------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3468999999975421 1234899999999999999999999999999999999988
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CC
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LE 219 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 219 (674)
+..+|+|.++|. ++||+|.+.++++ ||+|||.|+... ++ ++-+++++... |+
T Consensus 572 -~~~sG~v~v~gs---------iaYv~Q~pWI~ng-TvreNILFG~~~------d~----~rY~~Vi~aC~L~~Dle~Lp 630 (1381)
T KOG0054|consen 572 -PKLSGSVAVNGS---------VAYVPQQPWIQNG-TVRENILFGSPY------DE----ERYDKVIKACALKKDLEILP 630 (1381)
T ss_pred -ccccceEEEcCe---------EEEeccccHhhCC-cHHHhhhcCccc------cH----HHHHHHHHHccCHhHHhhcC
Confidence 456999999886 9999999999998 999999998532 22 23344444433 35
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
.+-.|.||++++ +||||||||+++|||+-+|.+|++||.|.|++|++..+.+.+..-+-.-+++|+|++|||.. ..+
T Consensus 631 ~GD~TeIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~ 707 (1381)
T KOG0054|consen 631 FGDLTEIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLP 707 (1381)
T ss_pred CCCcceecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhh
Confidence 677889998887 59999999999999999999999999999999999999998755433335899999999864 578
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+|+|++|++|+|++.|+.+|+.
T Consensus 708 ~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 708 HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hCCEEEEecCCeEecccCHHHHH
Confidence 89999999999999999999997
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=343.13 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=155.9
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|.++ +.+|+|.++ +.+|||+|++.+++. ||+|
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~---------~~i~yv~Q~~~l~~~-Tv~e 739 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAE---------RSIAYVPQQAWIMNA-TVRG 739 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEEC---------CeEEEEeCCCccCCC-cHHH
Confidence 34679999999999999999999999999999999999874 569999863 569999999998865 9999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.|+.... .....+..+...+++.++.+ ++..++.+|+. ..+||||||||++|||||+.+|+|++|||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000000111233444444 33445566643 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++.
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999887543222358999999999854 4679999999999999999999875
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-32 Score=301.38 Aligned_cols=197 Identities=31% Similarity=0.448 Sum_probs=161.4
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|... +.+|+|...+. -++||++|++.+.+..||.+.
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv~~~ 86 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-PDSGEVTRPKG-------LRVGYLSQEPPLDPEKTVLDY 86 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-CCCCeEeecCC-------ceEEEeCCCCCcCCCccHHHH
Confidence 4779999999999999999999999999999999999884 56999987532 259999999999999999998
Q ss_pred HHHHHhhc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH
Q 044602 188 LVFAAFLR-------------LPGN--------------MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK 240 (674)
Q Consensus 188 l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 240 (674)
+.-+..-. .+.. ...-+.+.++..++..+|+++. +++++ +||||||.
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~ 160 (530)
T COG0488 87 VIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-----SLSGGWRR 160 (530)
T ss_pred HHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-----hcCHHHHH
Confidence 87653210 0000 0000113567788888998876 77765 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE-EEecChh
Q 044602 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP-VYYGKAR 319 (674)
Q Consensus 241 Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 319 (674)
||++|++|+.+|++|+|||||+.||..+...+.+.|++. .| |+|+|||| ..-+-+.|++|+-++.|++ .|.|..+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence 999999999999999999999999999999999999864 47 99999999 5568889999999999976 4667766
Q ss_pred HHH
Q 044602 320 ESM 322 (674)
Q Consensus 320 ~~~ 322 (674)
...
T Consensus 237 ~~~ 239 (530)
T COG0488 237 SYL 239 (530)
T ss_pred HHH
Confidence 543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=314.84 Aligned_cols=219 Identities=23% Similarity=0.229 Sum_probs=158.5
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....|+++|++++|. .+.+|+|+||+|++||.+||+||||||||||||+|+|+
T Consensus 174 ~~~~I~i~nls~~y~---------------------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 174 AIKDIHMENFSISVG---------------------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CceeEEEceEEEEeC---------------------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 445689999998773 24599999999999999999999999999999999986
Q ss_pred CC--CCCccEEEECCEeC-----Ch-------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------
Q 044602 146 LT--DDVKGNITYNDIPY-----NP-------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG------- 198 (674)
Q Consensus 146 ~~--~~~~G~I~~~g~~~-----~~-------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~------- 198 (674)
.. .+.+|+|.+.+++. +. .+++.++|++|++.+... ++.++.........+.
T Consensus 227 ~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~ 305 (718)
T PLN03073 227 AIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRL 305 (718)
T ss_pred CCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHH
Confidence 41 23578887654431 10 012346677775433221 2222211000000000
Q ss_pred --------CCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 199 --------NMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 199 --------~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
........+++.++++.+|+. +..++.+ .+|||||||||+||++|+.+|++|||||||++||+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 000012345667788888885 3445554 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHH
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARES 321 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 321 (674)
..+.+.|+++ +.|+|+++|+.. .+...||++++|++|+++ |.|+.++.
T Consensus 381 ~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 381 LWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999886 689999999964 577889999999999996 77877654
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=250.96 Aligned_cols=200 Identities=31% Similarity=0.490 Sum_probs=158.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC---EeCC-----h-h----ccccEEEEccCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYN-----P-A----LKRRIGFVTQDD 176 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g---~~~~-----~-~----~~~~igyv~Q~~ 176 (674)
.--+||||++.|||+++|+|.|||||||||++|++++. +++|+|.+.- ++.+ + + +|..=|+|.|+|
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 35789999999999999999999999999999999995 4699999854 3322 1 1 344679999996
Q ss_pred C--CCC----CCCHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh
Q 044602 177 V--LLP----QLTVEETLV-FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL 249 (674)
Q Consensus 177 ~--l~~----~lTV~e~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~ 249 (674)
. +-. +-.|.|-+. .+++- --..++.+.++|+++.++... + +..++.+|||++||+.|||-|+
T Consensus 99 ~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLV 167 (258)
T COG4107 99 RDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLV 167 (258)
T ss_pred cccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHHHHHhc
Confidence 3 322 223444432 12111 123445678899999876432 1 2346799999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.|+++|+||||.|||..-+..++++++.+..+ |.+++++|||.. .+.-++||.++|++|++++.|-.+.++
T Consensus 168 t~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 168 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred cCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEeccccccccc
Confidence 999999999999999999999999999999875 999999999975 356679999999999999999877664
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=268.21 Aligned_cols=190 Identities=25% Similarity=0.362 Sum_probs=135.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHH-HHHHcCCCCCCccEEEEC-----------C-EeCCh--hcc-ccEEE
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLL-KIVGGRLTDDVKGNITYN-----------D-IPYNP--ALK-RRIGF 171 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl-~~L~G~~~~~~~G~I~~~-----------g-~~~~~--~~~-~~igy 171 (674)
...+|+||||++++||+++|+||||||||||+ ..+.. +|++.+. | ....+ ..+ ...++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 35699999999999999999999999999996 44431 2322111 0 00000 111 13444
Q ss_pred EccCC--CCCCCCCHH---HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHH
Q 044602 172 VTQDD--VLLPQLTVE---ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIG 245 (674)
Q Consensus 172 v~Q~~--~l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA 245 (674)
..|++ .+.|..+|. |...+...+. ......++ .+.++.++|.+ ..+.. +.+||||||||++||
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la 149 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLA 149 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHH
Confidence 44443 233444554 2222221111 11112223 56899999976 35554 458999999999999
Q ss_pred HHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEec
Q 044602 246 YEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYG 316 (674)
Q Consensus 246 ~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 316 (674)
|+|+.+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||++.. + +.||++++| ++|+++++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 5999999999999999999999999998789999999999853 4 689999999 999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=248.44 Aligned_cols=192 Identities=27% Similarity=0.424 Sum_probs=161.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe--CC-----h----hc-cccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP--YN-----P----AL-KRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~--~~-----~----~~-~~~igyv~Q~~ 176 (674)
-++|+|+||+++.||++++=||||||||||||.|-|.+ .+++|+|++.... ++ + +. |+.||||.|.-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 46999999999999999999999999999999999976 4569999986432 21 1 23 45799999987
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
...|..+..|-+.-.+.- .+++++..+.++.+++.++++++..-... +..+||||+|||.|||.++.|-+||+
T Consensus 103 RviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~La----PaTFSGGEqQRVNIaRgfivd~pILL 175 (235)
T COG4778 103 RVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLA----PATFSGGEQQRVNIARGFIVDYPILL 175 (235)
T ss_pred HhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCC----CcccCCchheehhhhhhhhccCceEE
Confidence 778877766666554432 25677888889999999999998766542 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
|||||++||..++..++++|++-+.+|..+|=+-||.. .-...+||++-+..
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 99999999999999999999998888999999999943 34568999988763
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=246.95 Aligned_cols=133 Identities=45% Similarity=0.745 Sum_probs=119.0
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++.+||+||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999874 469999999999864 467899999999999999999998
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
...++++++++.+++.+..++.++.. ...||||||||++||+||+.+|++++|||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23356889999999988888877543 36899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=266.12 Aligned_cols=194 Identities=28% Similarity=0.390 Sum_probs=153.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-----cCCC-----C----------CCccEEEECCEeCCh-----
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVG-----GRLT-----D----------DVKGNITYNDIPYNP----- 163 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-----G~~~-----~----------~~~G~I~~~g~~~~~----- 163 (674)
..-|+|||.+|+.|++++|.|+||||||||++.+. ..+. + ...--|.+|..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44699999999999999999999999999998552 1110 0 111246777766531
Q ss_pred ---------hccc----------------cEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 164 ---------ALKR----------------RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 164 ---------~~~~----------------~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
.+|+ .+.|..++...+..+||.|++.|..... ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 1111 2556666666677899999999875431 12466789999999
Q ss_pred Cc-cccccccCCccCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD---PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~---P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..+..+ +.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|+|+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 355543 58999999999999999996 7999999999999999999999999999888999999999985
Q ss_pred hHHHhhcCEEEEE------eCCEEEEecCh
Q 044602 295 SRMFHMFDKLLLI------SEGYPVYYGKA 318 (674)
Q Consensus 295 ~~i~~~~D~v~~L------~~G~iv~~G~~ 318 (674)
. .+.||+++.| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=270.38 Aligned_cols=201 Identities=23% Similarity=0.460 Sum_probs=173.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccC---CCCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQD---DVLLPQL 182 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~---~~l~~~l 182 (674)
.++|+||++++||+++|-|-=|||+|-|+++|.|.. +..+|+|.+||+++.. ..+..++||+.| .-++..+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 589999999999999999999999999999999955 5569999999998752 467789999987 5689999
Q ss_pred CHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 183 TVEETLVFAAFLRLP-G-NMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 183 TV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
+|.+|+.++...+.. . -++++..++.+++..+.+++.. ..+..++ .||||.+|+|.|||.|..+|++|||||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999999988332221 1 3566677778899999998853 3345554 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
||.|.|.-++.+|.++|++++++|++||++|-+. +|+..+||||+||++|+++..=+.
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999996 579999999999999999875443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=275.43 Aligned_cols=204 Identities=29% Similarity=0.420 Sum_probs=167.0
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++|+++.|. +.+.+++++||.+.+|+.+||+||||+|||||||+|+|..
T Consensus 319 ~~vl~~~~~~~~y~--------------------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 319 KLVLEFENVSKGYD--------------------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CeeEEEeccccccC--------------------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45688999988663 1267999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccc
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHT 224 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 224 (674)
.+ .+|+|.+.-. -++||..|+. .+.+..|+.|++.-... . ..+..+...|..++++. ...+
T Consensus 373 ~~-~~G~v~~g~~-------v~igyf~Q~~~~l~~~~t~~d~l~~~~~-----~----~~e~~~r~~L~~f~F~~~~~~~ 435 (530)
T COG0488 373 GP-LSGTVKVGET-------VKIGYFDQHRDELDPDKTVLEELSEGFP-----D----GDEQEVRAYLGRFGFTGEDQEK 435 (530)
T ss_pred cc-CCceEEeCCc-------eEEEEEEehhhhcCccCcHHHHHHhhCc-----c----ccHHHHHHHHHHcCCChHHHhC
Confidence 44 4899987522 3599999985 55578899998875321 1 11567889999999974 3345
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+| +.||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|++. .-|||+||||.. -+.+.|+++
T Consensus 436 ~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i 506 (530)
T COG0488 436 PV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRI 506 (530)
T ss_pred ch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceE
Confidence 55 489999999999999999999999999999999999999999999876 459999999964 588999999
Q ss_pred EEEeCCEEEE-ecChhHHHH
Q 044602 305 LLISEGYPVY-YGKARESME 323 (674)
Q Consensus 305 ~~L~~G~iv~-~G~~~~~~~ 323 (674)
+.+++ ++.. .|..++..+
T Consensus 507 ~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 507 WLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEcC-ceeEcCCCHHHHHH
Confidence 99998 5544 487776544
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=250.47 Aligned_cols=164 Identities=19% Similarity=0.316 Sum_probs=131.3
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--------CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--------DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--------~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lT 183 (674)
+++++++++| +++|+||||||||||+++|+|...+ ...|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7899999999 9999999999999999999987632 123578888877543 3457899999998665
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDE 259 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLDE 259 (674)
|+. . ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12356667766 34445443 589999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
||+|||+.+...+.+.|+++++ +.|||++||++.. .+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 9999999999999999999865 7899999999753 478999999973
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-30 Score=239.13 Aligned_cols=195 Identities=26% Similarity=0.437 Sum_probs=169.1
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
|-.+|+++..||+.-++|||||||||||-.++|+. + -+|+|.++|+++.. ++.++-+|..|+..-...|.|...
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-C-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 67899999999999999999999999999999987 3 48999999999863 567778999887655555789988
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh-----CC--CEEEEeCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV-----DP--SLLLLDEP 260 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~-----~P--~illLDEP 260 (674)
+.+.- +.++....++++...++|.+...+.+ +.|||||.|||-+|-..+. || ++|+||||
T Consensus 93 L~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 93 LTLHQ--------PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhhcC--------chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 87642 33556677889999999998877654 5899999999999977654 44 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||...+..+-+.|.+++.+|.+||++.||.+. ..+.+|++.+|++|++...|..+|++
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999875 67889999999999999999999885
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-27 Score=242.41 Aligned_cols=185 Identities=16% Similarity=0.317 Sum_probs=131.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---------------CCCcc--------EEEECCEe----
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT---------------DDVKG--------NITYNDIP---- 160 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~---------------~~~~G--------~I~~~g~~---- 160 (674)
++.++++++ |++++|+||||||||||+++|++.+. .+.+| +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456788887 78999999999999999999984321 11234 55665532
Q ss_pred CC-h--hccccEEEEccCCCCCC-CCCHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCccCccC
Q 044602 161 YN-P--ALKRRIGFVTQDDVLLP-QLTVEETLVFAAFLRLPGNMNR-QQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235 (674)
Q Consensus 161 ~~-~--~~~~~igyv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 235 (674)
.. . ..++.+++++|+..+++ ..|..|...+............ ...+.+ +.+.+++.+..+.. +..||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~~-----~~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQE-----MQQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhcccccccc-----ccccC
Confidence 11 1 35677999999887776 3577776655543322111000 000112 22334444444443 35899
Q ss_pred HHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 236 GGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 236 gGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|+|+++|++ ++.+.||++++|.
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999974 5899999999999999999999999999865 88899888885 4679999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-28 Score=248.57 Aligned_cols=185 Identities=19% Similarity=0.262 Sum_probs=138.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE-eC-Ch-----hccccEEEEccCC---------CCCCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI-PY-NP-----ALKRRIGFVTQDD---------VLLPQL 182 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~-~~-~~-----~~~~~igyv~Q~~---------~l~~~l 182 (674)
+.+ .+++|+||||||||||+++|++.+.+...|+++..|. ++ .. ..+..+++++|++ .+.|.+
T Consensus 23 ~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 23 FDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 344 4999999999999999999999885443578888776 32 11 1234799999985 346678
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCccCccCHHHHHHHHHHHH
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT---------------RVGGGFIKGISGGERKRTSIGYE 247 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~iA~a 247 (674)
||.+++..+...+...+ .++...+++.++++.+|+...... ..-+..+.+||||||||++||++
T Consensus 102 tV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 102 TVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence 99998876532211000 122344788899999998611000 01122356899999999999999
Q ss_pred Hh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 248 IL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 248 L~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
|+ .+|+++++||||++||+.+...+.+.|++++ +|.|+|++||++ ++.+.||+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 98 5789999999999999999999999999985 489999999994 5688899998876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-28 Score=247.41 Aligned_cols=179 Identities=15% Similarity=0.209 Sum_probs=135.8
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+.+++++++ ++++|+||||||||||+++|.- ++|.+.....++++++++|+..+++.+|+.|
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-----------~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-----------VFGFRASKMRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-----------HhccCHHHhhhhhHHHHhcCCCCCCCCceEE
Confidence 34668998887 8999999999999999999972 1233322212357999999988899999999
Q ss_pred HHHHHHhhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh----CCCEE
Q 044602 187 TLVFAAFLRLP-----GNMNRQQKYA--RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV----DPSLL 255 (674)
Q Consensus 187 ~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~----~P~il 255 (674)
++.+....... .+...+.... ..+++++.++|++..++.++ .+|+|||||++||++++. +|+++
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 87665432100 0111111010 12566677888877777654 899999999999999974 47999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 256 LLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 256 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
++||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999864 67889999995 57899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=275.79 Aligned_cols=207 Identities=27% Similarity=0.406 Sum_probs=152.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHH---------HHHcCCCCCC--c-c----EEEECCEeCCh---------
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLK---------IVGGRLTDDV--K-G----NITYNDIPYNP--------- 163 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~---------~L~G~~~~~~--~-G----~I~~~g~~~~~--------- 163 (674)
...|+|+|+++++||+++|.|+||||||||++ .|.|...+.. + + -|.+|-.++..
T Consensus 608 ~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY 687 (1809)
T PRK00635 608 KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTY 687 (1809)
T ss_pred cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceee
Confidence 34799999999999999999999999999999 5555321100 1 1 12232222110
Q ss_pred -----hcc---------c-----cEEEEccC--------------------------------------CCCCCCCCHHH
Q 044602 164 -----ALK---------R-----RIGFVTQD--------------------------------------DVLLPQLTVEE 186 (674)
Q Consensus 164 -----~~~---------~-----~igyv~Q~--------------------------------------~~l~~~lTV~e 186 (674)
.+| + ...|.++. ...+...||.|
T Consensus 688 ~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~e 767 (1809)
T PRK00635 688 IKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIAD 767 (1809)
T ss_pred hhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHH
Confidence 111 0 11122221 12566789999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHh---hCCCEEEEeCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEIL---VDPSLLLLDEPTS 262 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~---~~P~illLDEPTs 262 (674)
+|.++..-........++..+++ ++++.+||.+. .++.+ .+||||||||++||++|+ .+|+++||||||+
T Consensus 768 vL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTs 841 (1809)
T PRK00635 768 ILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTT 841 (1809)
T ss_pred HHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence 99987653211112234445566 58899999875 56654 489999999999999998 6999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe------CCEEEEecChhHHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS------EGYPVYYGKARESME 323 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 323 (674)
|||+.+...+++.|++++++|.|||+++|++.. + +.+|++++|. +|++++.|+++++..
T Consensus 842 GLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 842 GLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999998889999999999863 4 8999999996 789999999998753
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=230.55 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=126.4
Q ss_pred eeeEEEEe-CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC--EeCC-hhccccEEEEccCCCCCCCCCHHHHH
Q 044602 113 KGITGSIC-PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND--IPYN-PALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 113 ~~vs~~i~-~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g--~~~~-~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
++++|... +|++++|+||||||||||+++|++.+.....+....+. ..+. ...+..+++++|++.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 56666543 58999999999999999999999755433344444321 0111 134557999999863211 111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh----------CCCEEEEe
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV----------DPSLLLLD 258 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~----------~P~illLD 258 (674)
..+.++..+.+ .++..++.+..++. +..||||||||++||++|+. +|++++||
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 12222221111 23333344444444 35899999999999999985 57899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|||++||+.+...+.+.|++++++|+|+|++||++. .+...+|+++++++|.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999999999999999877999999999975 4678899999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=238.56 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=177.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC----Ch--hccccEEEEccCC---CCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY----NP--ALKRRIGFVTQDD---VLL 179 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~----~~--~~~~~igyv~Q~~---~l~ 179 (674)
...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ +. ..+..+||||.|. .+.
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv 349 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccCCHHHHHhcCCccCChhhccCccc
Confidence 35799999999999999999999999999999999987444 69999999996 22 2345799999985 578
Q ss_pred CCCCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 180 PQLTVEETLVFAAFLRL----PGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+.+|+.||+.+....+. ...+...+..+.+++++++++... ..+.+ .+.||||++||+-+||+|.++|++
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCE
Confidence 89999999998764321 113566778888999999998863 23333 358999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+..+||.|||..+...|.+.|.+++++|+.|++++-++. +++.+||||.+|.+|+++...++++.
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999999999999999999999999974 79999999999999999998887763
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-26 Score=230.31 Aligned_cols=165 Identities=17% Similarity=0.292 Sum_probs=125.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHH----cCCCCCCccEEEECCEeCC-hhccccEEEEccCC-----CCCCCCC
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVG----GRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDD-----VLLPQLT 183 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~----G~~~~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~-----~l~~~lT 183 (674)
..++++.+| +++|+||||||||||+++|. |... +..|.+..+...+. ...+..+++++|++ .....+|
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 344567778 99999999999999999995 7663 33565552222222 23456799999987 4455568
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHH------HHHHHHHhhCCCEEEE
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKR------TSIGYEILVDPSLLLL 257 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~iA~aL~~~P~illL 257 (674)
|.||+.+. .. ..+++.+ +. .++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~---------~~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQ----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------ch----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88888653 11 1222333 22 245899999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 258 DEPTSGLDSTSAN-KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 258 DEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
||||++||+.++. .+.+.|++++++ |+|+|++||++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 899999999965 3567999999963
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=250.29 Aligned_cols=197 Identities=26% Similarity=0.397 Sum_probs=157.6
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++++|++..-+ +.+..|++.|+.+++||-+.|.||||||||||+|+|+|+-
T Consensus 390 ~~~i~~~nl~l~~p--------------------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 390 DHGITLENLSLRTP--------------------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred cceeEEeeeeEECC--------------------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999987543 2247899999999999999999999999999999999977
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
|--+|+|..- -...+-|+||.|.+..+ |.+|-|.|..... . -.++.+.++|.++||++..++.=
T Consensus 444 -P~g~G~I~~P-------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~ 507 (604)
T COG4178 444 -PWGSGRISMP-------ADSALLFLPQRPYLPQG-TLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLD 507 (604)
T ss_pred -ccCCCceecC-------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHh
Confidence 4447877542 12458999999999888 9999998863211 1 23456788999999987665421
Q ss_pred cC-CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~-~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+. +--+.||+||||||++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +..+.++.+
T Consensus 508 ~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l 584 (604)
T COG4178 508 EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQL 584 (604)
T ss_pred ccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhhe
Confidence 11 1234699999999999999999999999999999999999999999998743 3899999999975 466667765
Q ss_pred EEe
Q 044602 306 LIS 308 (674)
Q Consensus 306 ~L~ 308 (674)
-+.
T Consensus 585 ~l~ 587 (604)
T COG4178 585 ELL 587 (604)
T ss_pred eec
Confidence 554
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=238.80 Aligned_cols=205 Identities=24% Similarity=0.308 Sum_probs=163.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
-.++++|+.|.|... .-=+..||++|+.||++-|+|.||||||||+++|.|+..
T Consensus 321 ~~lelrnvrfay~~~--------------------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~ 374 (546)
T COG4615 321 KTLELRNVRFAYQDN--------------------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374 (546)
T ss_pred cceeeeeeeeccCcc--------------------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 368999999988631 123678999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
|.+|+|++||+|++. +.|+-++-|+-|..+|+.+--.| . ....+.++..|+.+.|.+...
T Consensus 375 -PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e------------~---~as~q~i~~~LqrLel~~kts 438 (546)
T COG4615 375 -PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE------------G---KASPQLIEKWLQRLELAHKTS 438 (546)
T ss_pred -CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc------------c---CCChHHHHHHHHHHHHhhhhc
Confidence 569999999999974 57777888888888887631111 1 112345677777777665432
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ-KVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
-.=|+-..-.||-|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+- .++++|+||+.+|||.. -+..+|
T Consensus 439 l~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~AD 516 (546)
T COG4615 439 LNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHAD 516 (546)
T ss_pred ccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHH
Confidence 221211234699999999999999999999999999999999999999987664 45567999999999954 589999
Q ss_pred EEEEEeCCEEEEec
Q 044602 303 KLLLISEGYPVYYG 316 (674)
Q Consensus 303 ~v~~L~~G~iv~~G 316 (674)
|++.+++|++++..
T Consensus 517 rll~~~~G~~~e~t 530 (546)
T COG4615 517 RLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHhcCceeecc
Confidence 99999999999765
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=255.92 Aligned_cols=125 Identities=30% Similarity=0.430 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDP---SLLLL 257 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P---~illL 257 (674)
+||.|++.|...+. + ..+..+.++.+||.+ ..+..+ .+||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865331 1 123467899999975 355544 489999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
||||+|||+.+...+++.|+++.++|.|||+++|++.. .+.+|+|+.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998889999999999853 4679999999 799999999999874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-24 Score=249.68 Aligned_cols=125 Identities=30% Similarity=0.415 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhh---CCCEEE
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILV---DPSLLL 256 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~---~P~ill 256 (674)
.+||.|.+.|...+. ...+..++++.+||.. ..++.+ ++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777764321 1123457889999975 345543 5899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARES 321 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 321 (674)
|||||+|||+.+...+++.|+++.++|.|||+++|++.. .+.||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999853 4679999999 79999999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=209.86 Aligned_cols=214 Identities=20% Similarity=0.327 Sum_probs=167.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---CccEEEECCEeCC---h-hc----cccEEEEccC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD---VKGNITYNDIPYN---P-AL----KRRIGFVTQD 175 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~---~~G~I~~~g~~~~---~-~~----~~~igyv~Q~ 175 (674)
+...+++++|+++..||+-+++|.||||||-..|+|+|..+.. +.-+.++++.++- + +. -+.|++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 3356899999999999999999999999999999999976531 2344556666542 2 22 2368899999
Q ss_pred CC--CCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh
Q 044602 176 DV--LLPQLTVEETLVFAAFLRLPGNM---NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 176 ~~--l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
+. +-|.-+|...|.-........+. .-..+++++-++|.++|+.+..|- -..++.+|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--M~SYP~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--MRSYPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH--HHhCcchhccCcceeeeeehhhcc
Confidence 74 55555555444322211111110 012345678899999999887663 335788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|+.||||+++|+.++.+|.++|.++.+ +|+||+.++||... +.+.||++-||.-|+-++.++.+++++
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999976 48999999999764 889999999999999999999998864
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=233.39 Aligned_cols=204 Identities=23% Similarity=0.326 Sum_probs=158.5
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..+.++||+|.|+. +..++++++|-++.++.+|+|||||+|||||||++.|.+
T Consensus 387 ~pvi~~~nv~F~y~~--------------------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD--------------------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred CCeEEEeccccCCCC--------------------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 344788888886642 126899999999999999999999999999999999988
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccC--CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
.| ..|.|.-.-+ .++++-.|+ +.+--+.++-|++.=.. .+....+.+..+|.++||....+.
T Consensus 441 ~p-~~G~vs~~~H-------~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~ 504 (614)
T KOG0927|consen 441 QP-TIGMVSRHSH-------NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQV 504 (614)
T ss_pred cc-cccccccccc-------ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccc
Confidence 54 5888854332 234555554 34444567878765321 112345678899999999854443
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
. ..++||+|||+||.+|+.++..|.||+|||||+|||..+...+.+.|.+. .-+||.++||.. .+.+.+++|
T Consensus 505 ~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi 576 (614)
T KOG0927|consen 505 V----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEI 576 (614)
T ss_pred c----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHh
Confidence 2 24589999999999999999999999999999999999999999999876 358999999976 478899999
Q ss_pred EEEeCCEE-EEecChhH
Q 044602 305 LLISEGYP-VYYGKARE 320 (674)
Q Consensus 305 ~~L~~G~i-v~~G~~~~ 320 (674)
.+..+|.+ .+.|+...
T Consensus 577 ~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 577 WVCENGTVTKWDGDIEI 593 (614)
T ss_pred HhhccCceeecCccHHH
Confidence 99988765 46665543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=207.80 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=122.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE--CCEeCCh-----hccccEEEEccCCCCCCCCCH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY--NDIPYNP-----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~--~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV 184 (674)
++++++++.+| +.+|+||||||||||+.+|...+. |+... .|....+ .....+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 47788888887 889999999999999999974332 22111 1221111 123458888887665541
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH----hhCCCEEEEeCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI----LVDPSLLLLDEP 260 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL----~~~P~illLDEP 260 (674)
... ...+++++++++. .+..++++ ++||+|||||++||+++ +.+|++++||||
T Consensus 84 --------------~~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------------PLC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------------cCC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 011 1123567777776 44555554 58999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 261 TSGLDSTSANKLIQVLQKVAKA---GRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|+|||..+...+.+.|+++.++ +.|||+++|++.. +.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 9999999999999999998653 3689999999864 544 59999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=227.17 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=135.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
...+++|+++++.+|+.++|+|+|||||||+|++|+|+..|. .+=.++.-.+++.+...+-+-+|.+. .-..+.
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~-----~~~e~~ 161 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVME-----TDHERK 161 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhh-----hHHHHH
Confidence 467999999999999999999999999999999999987542 12222222222221111111111100 001111
Q ss_pred HHHHHHh-hcC----------------CCCCCHHHHHHHHHHHHHHcCC-CccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 187 TLVFAAF-LRL----------------PGNMNRQQKYARVQMILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 187 ~l~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
.+.+-+. +.. ...+..+..+.++-++|..+|. ++..++.+ .++|||+|.|+++||+|
T Consensus 162 rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~L 236 (614)
T KOG0927|consen 162 RLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARAL 236 (614)
T ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHH
Confidence 1111000 000 0012223334455566666664 34455544 58999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE-EEEecChhHHH
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY-PVYYGKARESM 322 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~ 322 (674)
..+|++|+|||||++||..+..-+-+.|.+..+ + ++++++|.- +-+-..|.+|+-|++++ +.|.|+.++..
T Consensus 237 f~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 237 FQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecch-hhhhhHhhhhheecccceeeecCCHHHHh
Confidence 999999999999999999999999999877532 2 899999985 45788999999999999 56778776653
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=222.67 Aligned_cols=205 Identities=21% Similarity=0.333 Sum_probs=158.6
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++|++|+..-|. ++..+.+|+|++|+.|+-+.|.||||||||+|+|+|+|+-
T Consensus 431 Dn~i~~e~v~l~tPt-------------------------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT-------------------------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred cceEEeeeeeecCCC-------------------------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc
Confidence 356899999885432 1355889999999999999999999999999999999976
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR- 225 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~- 225 (674)
+..+|++.--...- -+.+-||||.|.+--+ |.||.+.|...-- ....+...++++.+.|+.++|.|..++.
T Consensus 486 -p~~~G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~--~~~~~~~~d~~i~r~Le~v~L~hl~~r~g 557 (659)
T KOG0060|consen 486 -PSTGGKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAE--DMDSKSASDEDILRILENVQLGHLLEREG 557 (659)
T ss_pred -ccCCCeEEecccCC----CCceEEecCCCCcccc-chhheeeccCccc--cccccCCCHHHHHHHHHHhhhhhHHHHhC
Confidence 55689886533221 1558999999998877 9999999873211 1112223345677778877776654432
Q ss_pred -----ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 226 -----VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 226 -----vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
+--+-...||+||+||++.||-+.++|++-+|||.||++|...+..+.+.++++ |.|.|-+.|+.+ +.+.
T Consensus 558 gld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kf 632 (659)
T KOG0060|consen 558 GLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKF 632 (659)
T ss_pred CCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhh
Confidence 111112469999999999999999999999999999999999999999888764 999999999976 4676
Q ss_pred cCEEEEEeC
Q 044602 301 FDKLLLISE 309 (674)
Q Consensus 301 ~D~v~~L~~ 309 (674)
=|.++-|+.
T Consensus 633 Hd~~L~~~g 641 (659)
T KOG0060|consen 633 HDYVLRMDG 641 (659)
T ss_pred hhEEEEecC
Confidence 788888874
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=214.44 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=119.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe--CCh---------hccccEEEEccCCCC-CCCCCHHHH
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP--YNP---------ALKRRIGFVTQDDVL-LPQLTVEET 187 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~--~~~---------~~~~~igyv~Q~~~l-~~~lTV~e~ 187 (674)
.++ +++|+|||||||||||++|++.+.+. .|++..++.. +.. ...-.+.|..|++.. .-..++.+.
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~-~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~ 98 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK-SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGG 98 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC-cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECC
Confidence 344 99999999999999999999877433 5666554321 000 111134444444321 111122221
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCC--------ccCccCHHHHHHHHHHHHHhh
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT---------RVGGG--------FIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~iA~aL~~ 250 (674)
.. ..+... +....+.++++++.+|+...... .+.+. .+..||||||||++||++++.
T Consensus 99 ~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 99 SS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI 172 (247)
T ss_pred ce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH
Confidence 10 001111 11123456788888988532111 11111 236899999999999999987
Q ss_pred C----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 251 D----PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~----P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+ |+++++||||+|||+.++..+.+.|++++++|.++|++||++ ++.+.||++++|.
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 5 899999999999999999999999999987799999999995 3578899999997
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=212.63 Aligned_cols=174 Identities=26% Similarity=0.350 Sum_probs=138.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
-|+-=.+++..||+++++||||-||||+.++|+|.++| ++|+ .. .-+++|=||--.--...||++-|.-
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS----EE------DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-CCCC----Cc------cceEeecceeecCCCCCcHHHHHHH
Confidence 35555677888999999999999999999999998855 4776 11 2348888886332234599998765
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
....+... .---.++++-|+|++..++.|. +|||||.|||+||.+|.+++++++||||++-||++.+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 43322111 1123578888999998888775 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.+.+.|++..+. ++|.+++-||..- +-.++||+++.+
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999874 7999999999753 566789988875
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-21 Score=203.19 Aligned_cols=178 Identities=30% Similarity=0.408 Sum_probs=140.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC--CCCCCCCH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD--VLLPQLTV 184 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~--~l~~~lTV 184 (674)
+.++.+++++|-|.-...+||+||||.||||||++|.|.+.| ..|+.+-| .|-+||+..|+. .|-..-|.
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-~~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp 669 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-NDGELRKN-------HRLRIGWFDQHANEALNGEETP 669 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-Ccchhhcc-------ceeeeechhhhhHHhhccccCH
Confidence 347799999999999999999999999999999999998854 47776544 234699998873 45555577
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
-|.|.-.. +++. +.+...|-.+||...++|. .++.||||||-||++|.--+..|+||||||||++|
T Consensus 670 ~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 670 VEYLQRKF------NLPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred HHHHHHhc------CCCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 77665332 2222 3455678889999888884 35689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
|.++...+.+.|++. +..||+++||..- +.+.-..++|+++-
T Consensus 736 DIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 736 DIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred chhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 999999999999876 3478999999653 44444456666643
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=182.19 Aligned_cols=210 Identities=22% Similarity=0.313 Sum_probs=159.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+++.++.|+|+.. .+++-|+|++++.|....++|.||||||||||+|+|..-
T Consensus 12 ~aievsgl~f~y~~~--------------------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm 65 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--------------------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM 65 (291)
T ss_pred ceEEEeccEEecccC--------------------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc
Confidence 358999999988642 368999999999999999999999999999999999643
Q ss_pred CCCccEEEECCEeCCh---------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 044602 148 DDVKGNITYNDIPYNP---------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI 212 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~---------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~ 212 (674)
- -.|.|.++|.+.-. ++.+.+++-- +..+-.++++.+ +.|+.. .... ++-+++
T Consensus 66 v-~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~-----g~dp----~Rre~L 133 (291)
T KOG2355|consen 66 V-GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVG-----GDDP----ERREKL 133 (291)
T ss_pred c-cCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhcc-----CCCh----hHhhhh
Confidence 2 25899999976411 2444444433 222233456655 444421 1111 344566
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEec
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIH 291 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H 291 (674)
++.++++-.. ..+.+|-|||+||.|+..|++.=++|+|||-|--||..++..+++.+++-.+ +|.||+..||
T Consensus 134 I~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 134 IDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred hhheeccceE-------EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 6666654211 1246999999999999999999999999999999999999999999999876 4999999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
-..- +.....+++.+++|+++..-+.+++.+
T Consensus 207 IFDG-Le~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 207 IFDG-LETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred eccc-hhhcchhEEEecCCeeeeccccchhhh
Confidence 9754 778899999999999998666665544
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-21 Score=191.43 Aligned_cols=147 Identities=21% Similarity=0.211 Sum_probs=110.3
Q ss_pred ceeeeEEEEeCCe-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCC
Q 044602 111 ILKGITGSICPGE-ILALMGPSGSGKTTLLKIVG--------GRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 111 iL~~vs~~i~~Ge-~~ailG~sGsGKSTLl~~L~--------G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~ 181 (674)
-.-++|+++.+|+ +++|.||||||||||||.|+ |..-+. .. ...++|..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~-~~-------------~~~~~~~~~~~~~--- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA-AE-------------GSSLPVFENIFAD--- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc-cc-------------cccCcCccEEEEe---
Confidence 3568999999995 89999999999999999998 322111 00 0123333332111
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
++..+..+.. ...+|+||||++.|+++ +.+|+++++||||
T Consensus 79 ----------------------------------lg~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 1111111211 23799999999999977 5899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 262 SGLDSTSANKLI-QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 262 sgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+|||+.....+. ..++++.+.|.|+|++||+. ++.+.+|+++.|++|++++.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 46888877799999999983 578999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=192.26 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=68.2
Q ss_pred cCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEecCCchHHHhhcC--
Q 044602 231 IKGISGGERKRTSIGYEI----LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G-RTVITTIHQPSSRMFHMFD-- 302 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL----~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D-- 302 (674)
+.+||||||||+.++++| +.+|+++++||||+|||+.++..+.+.|++++++ | .|+|++||+... ..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 458999999998877554 5899999999999999999999999999999876 5 589999999754 456666
Q ss_pred EEEEEeCCE
Q 044602 303 KLLLISEGY 311 (674)
Q Consensus 303 ~v~~L~~G~ 311 (674)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=209.98 Aligned_cols=192 Identities=22% Similarity=0.285 Sum_probs=133.5
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccC-CCCCCCCCH
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD-DVLLPQLTV 184 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~-~~l~~~lTV 184 (674)
.+.+.+|.+-++++..|..++|+|+||+|||||||+|+. |.|. +-++.++.+. -+++-. +.+-.+ |.
T Consensus 90 ~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v~--~f~veqE~~g--~~t~~~~~~l~~D-~~ 157 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQVS--GFHVEQEVRG--DDTEALQSVLESD-TE 157 (582)
T ss_pred ecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCcC--ccCchhheec--cchHHHhhhhhcc-HH
Confidence 356789999999999999999999999999999999995 2221 2222222221 122211 122233 33
Q ss_pred HHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQ-QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
++.+...- + .+... +..+...++|..+|..+..... ..++||||=|-|+++||||..+|+||+|||||+.
T Consensus 158 ~~dfl~~e--~---~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 158 RLDFLAEE--K---ELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNH 228 (582)
T ss_pred HHHHHHhh--h---hhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhHHHHHHHHhcCCCEEeecCCccc
Confidence 33322210 0 01111 2233344588889987544322 2458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE-EEecChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP-VYYGKARESM 322 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 322 (674)
||..+...+.+.|+.+ +.|+|+++|| +.-+-..|..|+-+++-++ .|.|+.++..
T Consensus 229 LDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 229 LDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred chhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999875 4799999999 4456677888888877665 4667766554
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=201.32 Aligned_cols=204 Identities=25% Similarity=0.358 Sum_probs=157.4
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.|..+++.+|+|.|+.. .+ +++.+++..++.-+..+++|+||+||||++|++.|-
T Consensus 359 ~~p~l~i~~V~f~y~p~------------------------~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~ 413 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS------------------------EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD 413 (582)
T ss_pred CCCeeEEEeeeccCCCc------------------------ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhcc
Confidence 34568888888876421 12 689999999999999999999999999999999997
Q ss_pred CCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 044602 146 LTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHT 224 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 224 (674)
+.+ .+|.+.+.+ |.+++|-.|...=+-.+.|.+ +.+....+ | +.. ++..+.-+..+||+.. +..
T Consensus 414 l~~-~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~----~ee~r~hl~~~Gl~g~la~~ 478 (582)
T KOG0062|consen 414 LTP-TRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKT----EEEIRRHLGSFGLSGELALQ 478 (582)
T ss_pred CCc-ccceeeecc-------cceecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCC----HHHHHHHHHhcCCCchhhhc
Confidence 744 478776653 567999999754333344443 33333333 2 222 3456677899999743 222
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
. +.+||||||-||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +-.||++|||.+ .+...|+.+
T Consensus 479 s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~ 549 (582)
T KOG0062|consen 479 S-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKEL 549 (582)
T ss_pred c-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCcee
Confidence 2 4589999999999999999999999999999999999999999999876 457999999954 588899999
Q ss_pred EEEeCCEEEE-ecCh
Q 044602 305 LLISEGYPVY-YGKA 318 (674)
Q Consensus 305 ~~L~~G~iv~-~G~~ 318 (674)
++.++|++.- .|..
T Consensus 550 Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 550 WVVEDGKVTPIEGGI 564 (582)
T ss_pred EEEcCCcEEeeeccH
Confidence 9999999863 4444
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-21 Score=201.45 Aligned_cols=171 Identities=26% Similarity=0.431 Sum_probs=131.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-----------EECCEeCChhcc----------ccEEEEccCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-----------TYNDIPYNPALK----------RRIGFVTQDDV 177 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-----------~~~g~~~~~~~~----------~~igyv~Q~~~ 177 (674)
.++|++++|+||||-||||-+|+|+|.+.|. =|+- .+-|.++..-++ .++-||.--|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 5799999999999999999999999988653 2322 111222111111 12233333344
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.+.+ ||.|-|.-. ...-..+++++.++|.+..|+.|. +|||||-||++||.+++++.+++++
T Consensus 176 ~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 176 VVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred Hhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEE
Confidence 4555 777765421 122357899999999999998775 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
|||||-||...+....+.++++++.+++||++-||+. .+-.++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 9999999999999999999999988999999999975 35667899888873
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=177.48 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 234 ISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 234 LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
||||||||++||++++ .+|+++++||||++||+..+..+.+.|++++++|+|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999974 4678999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-21 Score=193.58 Aligned_cols=203 Identities=28% Similarity=0.497 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHh-hcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044602 416 DQFHIISRRTFRER-WRDYFD-KLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFE 493 (674)
Q Consensus 416 ~Q~~~L~~R~~~~~-r~~~~~-~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~e 493 (674)
+|++.+++|+++.. |++... ...++..+++++++|.+|.++++ +.++. ++.|++++.+...++....+....+..|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN-SQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc-ccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 59999999999985 555455 67999999999999999999884 33344 7788888877776655555555778899
Q ss_pred hhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044602 494 KIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVL 573 (674)
Q Consensus 494 r~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~ 573 (674)
|..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++++++..+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 7788888889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhc
Q 044602 574 SIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLK 622 (674)
Q Consensus 574 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~ 622 (674)
+...+..+.+++..++++++|.+.| .+|+|++|+.|+||++|++|++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~ 207 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRA 207 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999864
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-20 Score=181.76 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=108.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.|++|+++.. |++++|+||||||||||+|.|+|... +...|.++.. -.+++|.+.+|+.+|+.||+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEec-----CccCcccceEEEeccchhcc
Confidence 46888887775 79999999999999999999998542 1224444422 13677878899999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++.. ....+ .+++.++++.+++ .+|+++++||||+|+|+..
T Consensus 81 ~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 81 RDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred ccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHH
Confidence 87531 11222 3567777777642 7999999999999999999
Q ss_pred HHHHHH-HHHHHHhCCcEEEEEecCCchHHHhh--cCEEEEE
Q 044602 269 ANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHM--FDKLLLI 307 (674)
Q Consensus 269 ~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~--~D~v~~L 307 (674)
...+.. .++++.+.|.|+|++||++.. +... .++|-.+
T Consensus 123 ~~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 123 RQAASAAVLKFLKNKNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 987754 688887779999999999753 3333 3445444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=195.24 Aligned_cols=172 Identities=25% Similarity=0.378 Sum_probs=128.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
...+...+||++++|-.+.|.||||||||+|.++|+|+- |...|...+ + -+.++-|+||.|.+--+ |.+|.
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~------P-~~~~mFYIPQRPYms~g-tlRDQ 564 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSI------P-RPNNIFYIPQRPYMSGG-TLRDQ 564 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeec------C-CCcceEeccCCCccCcC-cccce
Confidence 355889999999999999999999999999999999976 543444322 1 13459999999987754 88888
Q ss_pred HHHHHhhc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCc----cCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 188 LVFAAFLR--LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF----IKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 188 l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~----~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+.|..... ...+.. ++..+.+|+.+.|++...+-.|=+- ...||||||||+++||.+-++|+.-+|||.|
T Consensus 565 IIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred eecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 77642110 001122 2345566676666655544332111 1359999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
|+..+..+..+.+..+. .|.+.|-++|+|+-
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999998888887764 49999999999974
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-19 Score=185.99 Aligned_cols=185 Identities=25% Similarity=0.384 Sum_probs=140.7
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-------CCCccEEEECCEeCChhccccEEEEccC-CCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-------DDVKGNITYNDIPYNPALKRRIGFVTQD-DVL 178 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-------~~~~G~I~~~g~~~~~~~~~~igyv~Q~-~~l 178 (674)
....+|+|+|++++||++++|+|+|||||||+|++|.|... .|++|.|.+--.. ..+.+|-+ +.-
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence 34579999999999999999999999999999999999642 2567777653211 23344543 223
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
|..-|+.|++.- .+.+ ...+.++|++.||.+..-.+ +..++||-|||.|+.||.++...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 445577776641 1111 12356889999997643221 234689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh-cCEEEEEeCCEEE
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM-FDKLLLISEGYPV 313 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 313 (674)
|--+.||+.++..+.+.|.+++++ |.|.+++||+|. .+-.+ -|+++++.=|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999974 999999999985 34455 6999888766543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=211.89 Aligned_cols=199 Identities=24% Similarity=0.326 Sum_probs=144.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-c----CCC---CCCccEEEECCEeCCh--------------hccc
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG-G----RLT---DDVKGNITYNDIPYNP--------------ALKR 167 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G----~~~---~~~~G~I~~~g~~~~~--------------~~~~ 167 (674)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+. ...+--|.+|-.|+.. .+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3589999999999999999999999999997433 1 110 1123346666555420 0110
Q ss_pred -------------------------------cEEEEccCCCCCC--------------------------------CCCH
Q 044602 168 -------------------------------RIGFVTQDDVLLP--------------------------------QLTV 184 (674)
Q Consensus 168 -------------------------------~igyv~Q~~~l~~--------------------------------~lTV 184 (674)
.-|++.=+..++| .|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0122211111111 3577
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD---PSLLLLDEPT 261 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~---P~illLDEPT 261 (674)
.|.+.|... ..+..+.-+.|+++||.... .| +...+|||||.||+-+|.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 777666521 12234556788889986432 33 23457999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe------CCEEEEecChhHHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS------EGYPVYYGKARESME 323 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 323 (674)
+||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+-|- .|+||+.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999974 677799999994 479999999999864
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=182.50 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=116.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEE-EEccCCCCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG-FVTQDDVLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ig-yv~Q~~~l~~~lTV~e~ 187 (674)
+.+.+|++++..+|++++|.||||+|||||++.++ .. .+..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~-----------------~~la~~g~~vpa~~~~~~------- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI-----------------VLMAQIGCFVPCDSADIP------- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH-----------------HHHHHhCCCcCcccEEEe-------
Confidence 56899999999999999999999999999999998 21 1122334 5555432211
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI--LVDPSLLLLDEP---TS 262 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL--~~~P~illLDEP---Ts 262 (674)
.++++++.+|+.+.. .+++|.|++|++.+++++ +.+|+++||||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 123345556665432 247999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 263 GLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
+||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 124 ~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999888543 3344444 48999999996 46789999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=182.90 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=68.7
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 233 GISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.||||||||+++|++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|+++|++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999997654 9999999999999999999999999999865 799999999975 468999999998
Q ss_pred CCE
Q 044602 309 EGY 311 (674)
Q Consensus 309 ~G~ 311 (674)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-18 Score=189.00 Aligned_cols=128 Identities=32% Similarity=0.469 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP---SLLLL 257 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P---~illL 257 (674)
.|||.|...|.... ....+.-+.|..+||.-. ++| +...+|||||.|||-+|.+|.... .+++|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 35666666654311 112344466777887532 233 334589999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe------CCEEEEecChhHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS------EGYPVYYGKARESME 323 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 323 (674)
||||+||-.....++++.|.+|.++|-|||+|-|++. +.+.||.|+=|- .|+||+.|+|+|+.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999974 689999999983 579999999999965
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=203.42 Aligned_cols=136 Identities=27% Similarity=0.432 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHhhcCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 179 LPQLTVEETLVFAAFLRLPGN---MN---RQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..+||.|.+.|...+..+.. .. -++..++++ .|+.+||.+. .|+.+ .+|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 345799999998544322110 00 012334443 6888899765 67665 48999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++++|||||+|||+.....+.+.|++++++|.|||+++|++.. + ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 9999999999999999999999999998889999999999764 4 569999999 999999999999874
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=165.51 Aligned_cols=75 Identities=28% Similarity=0.476 Sum_probs=68.2
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 233 GISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999988666899999999975 467799999996
Q ss_pred C
Q 044602 309 E 309 (674)
Q Consensus 309 ~ 309 (674)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=201.40 Aligned_cols=135 Identities=27% Similarity=0.398 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNR------QQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
..|||.|.+.|...+.....-.. ++..+++ +.+..+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 45799999988765432210000 1111222 34667788654 45544 589999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 253 --SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 253 --~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
++++|||||+|||+.+...+.+.|++++++|.|||+++|++.. + ..||+|++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999753 4 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=167.54 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=105.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF 193 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~ 193 (674)
..++++.+|++++|+|||||||||||++|++.......|... ...+..+++..|. +..++..+
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-------~~~~~~i~~~dqi---~~~~~~~d------- 83 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-------PAESASIPLVDRI---FTRIGAED------- 83 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-------cccccccCCcCEE---EEEecCcc-------
Confidence 345556689999999999999999999999533111122110 0012234443322 11111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 044602 194 LRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273 (674)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~ 273 (674)
..+.. ...++++++| ++.+.+++.+|+++++||||+|||+.....+.
T Consensus 84 ---------------------------~i~~~-----~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 ---------------------------SISDG-----RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ---------------------------cccCC-----ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11111 1256666665 66667889999999999999999999888876
Q ss_pred H-HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 274 Q-VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 274 ~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++..++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 5677776789999999985 46778999999999999988876444
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=168.75 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=62.8
Q ss_pred cCccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 231 IKGISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 3458999999999999985 7999999999999999999999999997652 3555555533 355666
Q ss_pred ---CEEEEEeCCEE
Q 044602 302 ---DKLLLISEGYP 312 (674)
Q Consensus 302 ---D~v~~L~~G~i 312 (674)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-17 Score=160.54 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=99.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEE-EEccCCCCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG-FVTQDDVLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ig-yv~Q~~~l~~~lTV~e~ 187 (674)
+.+.+|+++++++|++++|+||||+||||+++++++.. +..++| +| +...+.+++.|+
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~d~ 74 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIFNR 74 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccChhh
Confidence 56899999999999999999999999999999999753 111222 23 334455667776
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
|... ++..+..+.. .+.+|+|++|+ +.+.+++.+|+++++|||++|+|+.
T Consensus 75 I~~~------------------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 75 LLSR------------------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred eeEe------------------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 6422 2222222222 23799999975 5566789999999999999999998
Q ss_pred HHHHH-HHHHHHHHhCCcEEEEEecCCc
Q 044602 268 SANKL-IQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 268 ~~~~i-~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
....+ .+.++.+.+.|.++|++||+..
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 76665 4567778778999999999954
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-16 Score=168.14 Aligned_cols=212 Identities=25% Similarity=0.322 Sum_probs=147.6
Q ss_pred hcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCC-------h-hc---c
Q 044602 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYN-------P-AL---K 166 (674)
Q Consensus 99 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~-------~-~~---~ 166 (674)
+.++..+...+..+.|-|++|-.|..++++||||-||||||+-|+.|-- -|..=+|++..+++- . -+ .
T Consensus 267 iEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~ 346 (807)
T KOG0066|consen 267 IENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADK 346 (807)
T ss_pred eeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhH
Confidence 4556666666889999999999999999999999999999999997642 122344555544331 0 00 1
Q ss_pred ccEEEEccCCC-----CCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH
Q 044602 167 RRIGFVTQDDV-----LLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK 240 (674)
Q Consensus 167 ~~igyv~Q~~~-----l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 240 (674)
++...+..++. --...|+.|.+.-.+ .++- +.....+.++..+|.-+|.+.....+ ....+|||=|-
T Consensus 347 kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~r----Pt~kFSGGWRM 419 (807)
T KOG0066|consen 347 KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQER----PTTKFSGGWRM 419 (807)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcC----CccccCCceee
Confidence 11111111110 112346666554222 2221 11223345677888888887544332 23479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChh
Q 044602 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKAR 319 (674)
Q Consensus 241 Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 319 (674)
||++||||...|-+|.|||||+.||-.....+-+.|+.+. +|.++++||.. .+-..|..|+-|++-++- |.|...
T Consensus 420 RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchHH
Confidence 9999999999999999999999999999999888988875 59999999965 477889999999988765 456654
Q ss_pred HH
Q 044602 320 ES 321 (674)
Q Consensus 320 ~~ 321 (674)
-.
T Consensus 496 ~F 497 (807)
T KOG0066|consen 496 LF 497 (807)
T ss_pred HH
Confidence 33
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=154.45 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=109.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+.+|++++.++ ++++|.||||||||||||.+++....... |..+.. .+..++++.| +++.+++.|++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~-~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPA-SKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhcc------CCeecc-ccceecceee---EeccCCchhhh
Confidence 4589999999988 99999999999999999999864321111 222221 2345777765 56777777766
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG--GERKRTSIGYEILVDPSLLLLDEP---TSG 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~iA~aL~~~P~illLDEP---Tsg 263 (674)
..+ .|. .|+++++-+...+.+|++++|||| |++
T Consensus 87 s~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 87 AGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred ccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 532 111 233344444444679999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|.... ....++.+.+. +.++|++||+. ++.+++|++.-+.+|++...++.+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 887652 23345555555 89999999995 578889998888899988877766653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-15 Score=155.51 Aligned_cols=139 Identities=18% Similarity=0.240 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-----~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++.+.+++++|++ +.+.++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~-------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP-------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch--------
Confidence 5789999999999999999999884 45999999999874 13445678888865 334455555321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044602 198 GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277 (674)
Q Consensus 198 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~ 277 (674)
+.+ |. .......+|+++++|||++ ...+...++
T Consensus 182 ----k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 182 ----KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ----HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence 000 10 1223336999999999974 333445555
Q ss_pred HHHhCCcEEEEEecCCchHHH------------hhcCEEEEEeCCEEEEecChhHH
Q 044602 278 KVAKAGRTVITTIHQPSSRMF------------HMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~~~~~i~------------~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.+ ++|.++|+++|+++.+-. ..|||+++|++|+ ..|+++++
T Consensus 215 ~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 215 AL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 54 369999999998643212 6689999999887 66666554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=148.47 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=65.3
Q ss_pred CccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc-
Q 044602 232 KGISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF- 301 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 301 (674)
..+|+||+|++++|+.|+ .+|+|++||||+++||+..+..+.+.+.++ +..+++++|++.. +...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999886 799999999999999999999999988754 4588999998643 44443
Q ss_pred -CEEEEEeCCEE
Q 044602 302 -DKLLLISEGYP 312 (674)
Q Consensus 302 -D~v~~L~~G~i 312 (674)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-14 Score=148.75 Aligned_cols=176 Identities=26% Similarity=0.374 Sum_probs=133.5
Q ss_pred ccceeeeEEEEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCC-CCCCC
Q 044602 109 KHILKGITGSICPG-----EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~G-----e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~-l~~~l 182 (674)
+.-+-+..+.|+.| |++..+|.||.|||||++.++|+++++..|+|-. -.++|=||.-. -+..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~----------lnVSykpqkispK~~~- 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV----------LNVSYKPQKISPKREG- 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc----------cceeccccccCccccc-
Confidence 44567777888777 5789999999999999999999987665555532 24667777632 2333
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||++.+.--. + +.-..-+-+.++++-|.+++..|..| .+|||||.|||++|..|=..+++++.|||.+
T Consensus 418 tvR~ll~~kI--r-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKI--R-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHh--H-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 8988664211 1 01112245678888888888888765 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 263 GLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
-||++.+..--+.+++.- +.++|-.++-||.-- .-.++|||++.+
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 999999998888888854 458999999999643 235789987764
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-14 Score=143.46 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI-QVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
..+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+---+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 368888777433332 34599999999999999999887765 556777764 89999999996 46788876444444
Q ss_pred CEEEE
Q 044602 310 GYPVY 314 (674)
Q Consensus 310 G~iv~ 314 (674)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44443
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-14 Score=124.50 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=62.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+++++++++||.++|+||||||||||++++. +|++.++|.++.. ..++.+++++|+ +|+. |+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hH
Confidence 45899999999999999999999999999999986 6899999998742 345567788777 6665 99
Q ss_pred HHHHHHH
Q 044602 185 EETLVFA 191 (674)
Q Consensus 185 ~e~l~~~ 191 (674)
+|||.+.
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=135.78 Aligned_cols=88 Identities=28% Similarity=0.491 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 207 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445566666555432 69999999999996654 46789999999999999999999999999865
Q ss_pred CcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 283 GRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 283 g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+.-+|++||++ .++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 58899999996 4688999987764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.5e-13 Score=133.58 Aligned_cols=132 Identities=23% Similarity=0.243 Sum_probs=88.7
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCC-CCCHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLP-QLTVEETL 188 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~-~lTV~e~l 188 (674)
.|-+|+++.=..+..++|.||||+|||||||.++....-...|...... .-.++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~-- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS-- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh--
Confidence 4556666543223799999999999999999998321101245443221 234677777532211 111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS--GGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
++| .-|-||++++++++.+|+++++|||++|+|+
T Consensus 88 --------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 88 --------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred --------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 122 3567999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhC---CcEEEEEecCCc
Q 044602 267 TSANKL-IQVLQKVAKA---GRTVITTIHQPS 294 (674)
Q Consensus 267 ~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~ 294 (674)
.....+ ...++++.+. +.++|++||++.
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 765555 5688888764 358999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=161.58 Aligned_cols=136 Identities=26% Similarity=0.332 Sum_probs=93.9
Q ss_pred ccceee-----eEEEEeCC-eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCC-CCCC
Q 044602 109 KHILKG-----ITGSICPG-EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV-LLPQ 181 (674)
Q Consensus 109 ~~iL~~-----vs~~i~~G-e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~-l~~~ 181 (674)
++++++ +|+.+.+| +.++|.||||+|||||||+++|.......| .+||.... .++
T Consensus 303 hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----------------~~Vpa~~~~~~~- 364 (771)
T TIGR01069 303 HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----------------IPIPANEHSEIP- 364 (771)
T ss_pred CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----------------CCccCCcccccc-
Confidence 445544 78888877 999999999999999999999862111122 13333321 111
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+.+.+. . .+... +.+.+ ....+|+|++++..|++.+ .+|+++|+|||+
T Consensus 365 --~~d~i~-~-------~i~~~------~si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g 412 (771)
T TIGR01069 365 --YFEEIF-A-------DIGDE------QSIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELG 412 (771)
T ss_pred --chhhee-e-------ecChH------hHHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCC
Confidence 111110 0 00000 00110 1247999999999998876 899999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHhCCcEEEEEecCCc
Q 044602 262 SGLDSTSANKL-IQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 262 sgLD~~~~~~i-~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
+|+|+.....+ ...++.+.+.|.++|++||+..
T Consensus 413 ~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 413 AGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99999999999 5678888878999999999964
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-13 Score=141.34 Aligned_cols=185 Identities=25% Similarity=0.355 Sum_probs=129.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccc--------------cEEEEccCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKR--------------RIGFVTQDDV 177 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~--------------~igyv~Q~~~ 177 (674)
+||++.+++|.||-||||-|++++|.++++. |.-. ++.+..+ ++.. +.-||.|-+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl-g~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL-GRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC-CCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 5899999999999999999999999987642 2210 1111110 0000 0111111111
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
... .+|.++|. +...++..+++++.+.|.+..++.+. .|||||-||.+||.+-+.+.++.++
T Consensus 176 ~~k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 176 AVK-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHH-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEe
Confidence 111 13333332 22223356778888888888887664 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC-----CEEEEecChhHHHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE-----GYPVYYGKARESMEYF 325 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~~~~f 325 (674)
|||.+-||...+..-...++.+...++=||++-||.+ .+..+.|-+..|.. |-+.---+..+..+-|
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 9999999999999999999999888999999999986 35667888888863 3333333455555544
|
|
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-11 Score=120.03 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=118.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044602 506 YRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLI 585 (674)
Q Consensus 506 Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~ 585 (674)
-++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.+.++.+.+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~ 164 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML 164 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3678999999999999999999999999998877553 34555556666777888999999999999999999999999
Q ss_pred HHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHH
Q 044602 586 LMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAY 662 (674)
Q Consensus 586 ~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~ 662 (674)
..+++.+||.+.| .+|+|++|+.+++|.+|+.|++-.. .| . .+..+.+.++++++.+.+++.+++.
T Consensus 165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~------~-----~~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 165 MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG------V-----SPTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC------C-----CcccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 8999999999999999999996643 11 0 0123456788888888887777664
Q ss_pred H
Q 044602 663 F 663 (674)
Q Consensus 663 ~ 663 (674)
.
T Consensus 234 ~ 234 (236)
T TIGR01247 234 V 234 (236)
T ss_pred H
Confidence 3
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-13 Score=133.05 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 044602 237 GERKRTSIGYEILVDPSLLLLDEPT-----SGLDSTSANKLIQVLQKVAK 281 (674)
Q Consensus 237 GerqRv~iA~aL~~~P~illLDEPT-----sgLD~~~~~~i~~~L~~l~~ 281 (674)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=127.74 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=88.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+.+|+++.+++|++++|.||||+||||+++++++.......|...... . -.++|..|- +..+...|++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d~~ 87 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S------ATLSIFDSV---LTRMGASDSI 87 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c------eEEeccceE---EEEecCcccc
Confidence 56899999999999999999999999999999999843233456543221 1 123332221 1111111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS--GGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
. .++| ..|-+|++-...-+.+|+++|+|||.+|.|+
T Consensus 88 ~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 88 Q------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred c------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 0 0122 2345555555556678999999999999987
Q ss_pred HHHHHH-HHHHHHHHhC-CcEEEEEecCCc
Q 044602 267 TSANKL-IQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 267 ~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
.....+ ...++.+.+. +.++|++||++.
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 777765 5667777775 889999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=131.47 Aligned_cols=174 Identities=19% Similarity=0.213 Sum_probs=106.9
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEE--CCEe-CCh-hccc---cEEEEccCCCCCCCCCHHHH
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITY--NDIP-YNP-ALKR---RIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~--~g~~-~~~-~~~~---~igyv~Q~~~l~~~lTV~e~ 187 (674)
=+.+.+||.++|+||+|+|||||++.+++..... .+..+.+ -+.+ .+. ++.+ .+-.+.+-+. +..+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 3578899999999999999999999999866432 1122222 1211 111 1222 1222223221 11111
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHH-----------cCCCccccccccCCccCccCHHH--------HHHHHHHHHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKE-----------LGLERCRHTRVGGGFIKGISGGE--------RKRTSIGYEI 248 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~-----------lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~iA~aL 248 (674)
+.... ...+.++...+. -.+.+..++.++.. .+.+|||| +||+++||++
T Consensus 85 ~~~~~-----------~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~-G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 85 VQVAE-----------MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPS-GKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHHH-----------HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccC-CCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 11100 000111111100 01123334444332 34589999 9999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANK-LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+... ...+|.|.+|+.|++
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 999999999 999999766554 54 55555468899999999865 788999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=120.36 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044602 507 RLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLIL 586 (674)
Q Consensus 507 ~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~ 586 (674)
+...++++|.+..++..+++++++..+.|++.|++.. +++.+++.+++..++..+++.++++++++...+ ...+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567799999999999999999999999999999864 567777888889999999999999999876543 344455
Q ss_pred HHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 044602 587 MLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAYFC 664 (674)
Q Consensus 587 ~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~ 664 (674)
.+.++++|.+.| .+|+|++|+.|++|.+|+.+++-.+. .++ .....|.++++|+++.+++.++++..
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~----~~~-------~~~~~~~~~~~L~~~~~v~~~la~~~ 202 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLI----SGG-------NDGTLWQAVAVLLLILVVFLALSLLS 202 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHH----hCC-------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888 89999999999999999999986440 000 02346889999999999999999988
Q ss_pred HHHhh
Q 044602 665 LRKRI 669 (674)
Q Consensus 665 L~~~~ 669 (674)
+|+|.
T Consensus 203 ~~~~~ 207 (208)
T TIGR03062 203 ARRKR 207 (208)
T ss_pred Hhhhc
Confidence 87664
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-12 Score=144.87 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.2
Q ss_pred CccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEILVD----PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~----P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 35689999999
Q ss_pred eCCE
Q 044602 308 SEGY 311 (674)
Q Consensus 308 ~~G~ 311 (674)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-11 Score=133.10 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=114.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC---Ch---------hccccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY---NP---------ALKRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~---~~---------~~~~~igyv~Q~~ 176 (674)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.|.+.|+.- .+ .+++.+.+|.+.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 5689999 9999999999999999999999999999764 4589999965443 21 2567789998654
Q ss_pred CCCCCCCHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC-HHHHHHHHHHHHHhhCCC
Q 044602 177 VLLPQLTVEETL--VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS-GGERKRTSIGYEILVDPS 253 (674)
Q Consensus 177 ~l~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqRv~iA~aL~~~P~ 253 (674)
. ++.+-. .+.+ -.+.|.+..-|- |-.+- ..+++ --|-+| ++.
T Consensus 224 ~-----~~~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~r-----Eis---- 268 (438)
T PRK07721 224 Q-----PALMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQR-----EIG---- 268 (438)
T ss_pred C-----CHHHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHHH-----HHH----
Confidence 2 222211 1111 112222222231 11110 01111 011111 110
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 254 LLLLDEP--TSGLDSTSANKLIQVLQKVAK--AGR-----TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 254 illLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||.++ .+||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 112453 789999999999999999874 575 99999999874 7799999999999999998764
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=140.65 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=69.9
Q ss_pred CccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 799999999985 46899999999
Q ss_pred eCCE
Q 044602 308 SEGY 311 (674)
Q Consensus 308 ~~G~ 311 (674)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-12 Score=149.25 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
..+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. .++.+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 47999999999999988 8999999999999999999988865 677777779999999999542 33344544443 45
Q ss_pred EEEE
Q 044602 311 YPVY 314 (674)
Q Consensus 311 ~iv~ 314 (674)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5554
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=142.79 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=69.2
Q ss_pred cCccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 231 IKGISGGERKRTSIGYEIL----------VDPSLLLLDEPT-SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~----------~~P~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 4689999999999999887 599999999998 789999999999999998 4899999999964 467
Q ss_pred hcCEEEEEeC-CEE
Q 044602 300 MFDKLLLISE-GYP 312 (674)
Q Consensus 300 ~~D~v~~L~~-G~i 312 (674)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999985 543
|
|
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-09 Score=110.05 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=116.4
Q ss_pred hhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044602 493 EKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAV 572 (674)
Q Consensus 493 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~ 572 (674)
|+..+.|=+..- .++..|+++|.+..++..++..+++ .+++++.|++..... +..++...+....+.+++.++++++
T Consensus 64 ~~G~l~rl~~~P-~~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATP-LPRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444 3788999999998888877665545 455677788865433 2333344455556667777777777
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCchHH
Q 044602 573 L---SIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGGLQE 646 (674)
Q Consensus 573 ~---~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~~~~ 646 (674)
+ +.+.+..++.++..+++++||.+.| .+|.|++|+.+++|++|+.+++-.. .| ..+....|.+
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-----------~~~~~~~~~~ 209 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-----------SVDTFGAVRD 209 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-----------CCChhhHHHH
Confidence 4 4555578888888999999999999 9999999999999999999987643 11 0123456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 044602 647 VWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 647 ~~il~~~~~~~~~l~~~~L~~~ 668 (674)
+++++++.+++..++....||+
T Consensus 210 ~~~l~~~~~v~~~la~~~~~r~ 231 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLRRR 231 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888887777766654
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-11 Score=133.44 Aligned_cols=137 Identities=26% Similarity=0.390 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI------LKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..|++.|.+.|...+.+.. ..+...+..++++ |..+||.-. ++ +...+|||||.||+-+|..+=++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~-----R~a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLS-----RSAGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccccc-----ccCCCcChhHHHHHHHHHHhccc
Confidence 34578888888876655321 1111222223333 333566532 22 23458999999999999999876
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHHH
Q 044602 252 P--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESME 323 (674)
Q Consensus 252 P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 323 (674)
= =+++||||+-||-+..-.++++.|++|++.|-|+|++-||+. +.+.+|+|+=| +.|+|++.|+++++++
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 4 478999999999999999999999999999999999999964 58889999998 4689999999999974
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=148.21 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred ccCccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 230 FIKGISGGERKRTSIGYEILV----------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~----------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|++|||++. ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence 456899999999999999986 79999999999999999999999999999888999999999975 4788
Q ss_pred hcCEEEEEeCC
Q 044602 300 MFDKLLLISEG 310 (674)
Q Consensus 300 ~~D~v~~L~~G 310 (674)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-09 Score=107.96 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=147.8
Q ss_pred HHHHHHHHHHh-hc-chhHHHHHHHHHHHHHHHHHHhcCCCCCCh-HhHHHH--HHHHHHHHHHHHHHHHHHHHH-hhh-
Q 044602 419 HIISRRTFRER-WR-DYFDKLRLVQALGVAVVLGLLWWKSQSTTE-AQLRDQ--VGLIFYICIFWTSSSIFGAVY-VFP- 491 (674)
Q Consensus 419 ~~L~~R~~~~~-r~-~~~~~~r~~~~i~~all~G~lf~~~~~~~~-~~~~~~--~g~lff~~~~~~~~~~~~~i~-~f~- 491 (674)
..+.+|+++.. |+ +......+++-++.-+++|..|-....+.. .+..+. -|.+-+.+++.++ ++... .+.
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~~ 84 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST---FETIYATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45568998875 44 334445666777676777776533211000 011111 1333222222211 11111 111
Q ss_pred -hhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 492 -FEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGA 570 (674)
Q Consensus 492 -~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a 570 (674)
.|+..++|-+..-. ++..+.++|++.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++|.++++
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333333332 6788999999998877777766655555443 44433 33444445556677778899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCchHHH
Q 044602 571 AVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGGLQEV 647 (674)
Q Consensus 571 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~~~~~ 647 (674)
+.++.+.+..+..++..+++.+||.+.| .+|+|++|+.+++|+.|+.|++-.. .| + +..+.|.++
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g-----~-------~~~~~~~~~ 229 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG-----G-------PGTQVGLHL 229 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC-----C-------CcHHHHHHH
Confidence 9999999999999999999999999988 8999999999999999999996432 11 0 011345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044602 648 WVLLGMALAYRLCAYFCLRKRI 669 (674)
Q Consensus 648 ~il~~~~~~~~~l~~~~L~~~~ 669 (674)
++++++.+++..++...+|+|.
T Consensus 230 ~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 230 GALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888887777653
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=118.96 Aligned_cols=150 Identities=19% Similarity=0.302 Sum_probs=91.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHH-HHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 044602 118 SICPGEILALMGPSGSGKTTL-LKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL 196 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTL-l~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~ 196 (674)
-+++|++++|.|+|||||||| ++.+++...+ | ..+.|+..+ .|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g--------------~~~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN---G--------------YSVSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CcEEEEeCC------CCHHHHHHHHHHhCC
Confidence 489999999999999999999 6888875421 1 123455422 255555544322211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGL----DSTS 268 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgL----D~~~ 268 (674)
. .++.... +.-...+ + . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+..
T Consensus 77 --~---------~~~~~~~-~~l~~~~--~---~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 --D---------INKKLIS-GKLLYIP--V---Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred --c---------hHHHhhc-CcEEEEE--e---c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 0 0111111 1000001 0 1 136777665544444333 369999999999999 8888
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCch------HHHhhcCEEEEEe
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSS------RMFHMFDKLLLIS 308 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 308 (674)
...+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 889999999998878887776664321 0234567777776
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-11 Score=123.72 Aligned_cols=63 Identities=35% Similarity=0.518 Sum_probs=54.0
Q ss_pred CccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 232 KGISGGERKRTSIGYEILVDP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999998888877 899999999999999999999999888766889999999974
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-09 Score=106.25 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCC-CC------CC--hHhHHHHHHHHHHHHHHHHHHHHH
Q 044602 415 WDQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKS-QS------TT--EAQLRDQVGLIFYICIFWTSSSIF 484 (674)
Q Consensus 415 ~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~-~~------~~--~~~~~~~~g~lff~~~~~~~~~~~ 484 (674)
+++++.+++|+++.. |++......+++-++.-+++|.+|-.. +. ++ .-...--.|.+-+...+.++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 467899999999975 544445556777777777788777332 10 00 001122233333333222221
Q ss_pred HHHH-hhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044602 485 GAVY-VFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQG 563 (674)
Q Consensus 485 ~~i~-~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s 563 (674)
.+.. ....|+..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.....++.....+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1123333444444444 3777899999999988777776655555443 36665544455445555667777889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CC---hhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCcccc
Q 044602 564 AGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HI---PKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTV 638 (674)
Q Consensus 564 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~ 638 (674)
+|.++|+++++.+.+..+.++++.+++.++|.+.| .+ |+|++|+.++||+.|..|++-.. - .
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~---~-~--------- 222 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA---L-Y--------- 222 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH---H-h---------
Confidence 99999999999999998888999999999998876 44 89999999999999999987422 0 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 639 NLSGGLQEVWVLLGMALAYRLCAYFCLRK 667 (674)
Q Consensus 639 ~~~~~~~~~~il~~~~~~~~~l~~~~L~~ 667 (674)
+ +..|..+++++++.+++..++....|+
T Consensus 223 g-~~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 223 G-QLNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred C-CcchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 013566677777777777777666554
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=113.70 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred cCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEecCCch------
Q 044602 231 IKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLD---STSANKLIQVLQKVAKAGRTVITTIHQPSS------ 295 (674)
Q Consensus 231 ~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------ 295 (674)
+..+|+||+| +.........+|+++++||||+.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccC
Confidence 3479999998 4555555667999999999999999 888888889999998889999999998653
Q ss_pred --HHHhhcCEEEEEe
Q 044602 296 --RMFHMFDKLLLIS 308 (674)
Q Consensus 296 --~i~~~~D~v~~L~ 308 (674)
.+..++|.++.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567899999987
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-11 Score=119.19 Aligned_cols=134 Identities=21% Similarity=0.243 Sum_probs=89.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+-+|+++..++|++++|.||||+||||+++.+++...-... |..+... +..++++ +.++..+...|++
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d~~ 86 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAK-SMRLSLV---DRIFTRIGARDDI 86 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCcc-ccEeccc---cEEEEecCccccc
Confidence 5689999999999999999999999999999999974311101 1111110 0112211 1222222222222
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS--GGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
.. ++| ..|-+|++-....+.+|+++++|||.+|+|+
T Consensus 87 ~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 87 MK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred cc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 11 111 1345555555555678999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CcEEEEEecCCc
Q 044602 267 TSANKLIQV-LQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 267 ~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~ 294 (674)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999998887 7778775 899999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=113.75 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=64.1
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEP--TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
..+||+|+-+..+++..+.+|+++++||| +.++|. .+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 36999999999999999999999999995 444443 35566666656799999999984 34677999999999
Q ss_pred CEEEEec
Q 044602 310 GYPVYYG 316 (674)
Q Consensus 310 G~iv~~G 316 (674)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9987763
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=104.53 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=59.8
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEe
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLIS 308 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~ 308 (674)
.....|-||-=---+.+.+ ++.-|.+||||-++|.+.-+..++..|+++++.|.-+|+.||.|-- ..+ --.|+-++
T Consensus 126 sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL--lAiP~A~I~~~~ 202 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL--LAIPGAEIYEIS 202 (233)
T ss_pred chhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh--eeCCCcEEEEEe
Confidence 3456899997654444443 4668999999999999999999999999999999999999999842 222 13455555
Q ss_pred CCE
Q 044602 309 EGY 311 (674)
Q Consensus 309 ~G~ 311 (674)
.+-
T Consensus 203 ~~g 205 (233)
T COG3910 203 ESG 205 (233)
T ss_pred cCC
Confidence 443
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=120.97 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=95.6
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe-CChhccccEEEEccCCCCCCCCCHHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP-YNPALKRRIGFVTQDDVLLPQLTVEETLVFAA 192 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~-~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~ 192 (674)
=+++.+++|+.++|.||+|||||||+++|++.+ ++..|.+.+.... +....+..+.++.+...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~~~~~~~l~~~~~~--------------- 199 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPHPNYVHLFYSKGG--------------- 199 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCCCCCEEEEEecCCC---------------
Confidence 367889999999999999999999999999987 4446766664211 00000112222211100
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 044602 193 FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272 (674)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i 272 (674)
+. ...++- .-.++.+|-.+|+++++|||.+ .++
T Consensus 200 ---------------------------~~---------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 200 ---------------------------QG---------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ---------------------------CC---------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 00 001111 1134556778999999999996 345
Q ss_pred HHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 273 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++.+.....+++.|+|..+. ....||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhhccccccCCCHHHH
Confidence 66677665423467999999874 6668999999999998888887765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-10 Score=137.87 Aligned_cols=77 Identities=29% Similarity=0.405 Sum_probs=68.4
Q ss_pred ccCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 230 FIKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 230 ~~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+..|||||+| |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555666788999999999999999999999999999998777889999999963 5789999
Q ss_pred EEEEe
Q 044602 304 LLLIS 308 (674)
Q Consensus 304 v~~L~ 308 (674)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=143.11 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred cccccCCccCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEec
Q 044602 223 HTRVGGGFIKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-----AGRTVITTIH 291 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H 291 (674)
|+.++. ...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||
T Consensus 1191 ~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 555542 2479999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CCchHHHhhc
Q 044602 292 QPSSRMFHMF 301 (674)
Q Consensus 292 ~~~~~i~~~~ 301 (674)
++. .+..+|
T Consensus 1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606 1269 DED-FVELLG 1277 (1311)
T ss_pred CHH-HHHHHh
Confidence 975 355553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-07 Score=97.31 Aligned_cols=239 Identities=17% Similarity=0.134 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHhcC-CCC-CChH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 414 WWDQFHIISRRTFRERWRDY--FDKLRLVQALGVAVVLGLLWWK-SQS-TTEA-QLRDQVGLIFYICIFWTSSSIFGAVY 488 (674)
Q Consensus 414 ~~~Q~~~L~~R~~~~~r~~~--~~~~r~~~~i~~all~G~lf~~-~~~-~~~~-~~~~~~g~lff~~~~~~~~~~~~~i~ 488 (674)
.|+-++.+.+|+.+..+|++ ....-+++.++..+++|.++-. .+. +..+ -..--.|.+-+.....+.. .+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 46778899999998865543 2233455555666667766521 111 0110 1111224433332222211 1122
Q ss_pred hhhhhh--hHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 489 VFPFEK--IYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGE 566 (674)
Q Consensus 489 ~f~~er--~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~ 566 (674)
.+..+| ....|=+.. --++..+.+++++...-..++..++...+.+...|.+.. ....++...++...+....|.
T Consensus 83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222332 111111122 347788999999988777666666555555544466543 233333333333443444588
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCc
Q 044602 567 LFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGG 643 (674)
Q Consensus 567 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~ 643 (674)
+++.+.++.+....+..+++.+++..+|.+.| ++|+|++|+.++||+.|..|++=.. .| .+....
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g------------~~~~~~ 227 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG------------ISDVPL 227 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC------------CCCccH
Confidence 88888999888888999999999999999888 8999999999999999999987532 00 011234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044602 644 LQEVWVLLGMALAYRLCAYFCLRKRIN 670 (674)
Q Consensus 644 ~~~~~il~~~~~~~~~l~~~~L~~~~~ 670 (674)
|.++++++++.+++..++....|++.+
T Consensus 228 ~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 228 WLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 788899999999888888888877654
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.7e-10 Score=136.12 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=69.0
Q ss_pred ccCccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 230 FIKGISGGERKRTSIGYEILV--------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~--------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+++|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ...++.
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhcc
Confidence 456899999999999999996 89999999999999999999999999999888999999999743 345566
Q ss_pred CEEEEEeC
Q 044602 302 DKLLLISE 309 (674)
Q Consensus 302 D~v~~L~~ 309 (674)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66777654
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=104.06 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 233 GISGGERKRTSIGYEILVDPSLLLLDEPTS----------GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~~P~illLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
..+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666778888999999999999999994 4555556666666666655699999999987653
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-09 Score=124.79 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=64.8
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH--------HhhcCEEEEEeCCEEEEecChh
Q 044602 249 LVDPSLLLLDEPTSGL-DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM--------FHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 249 ~~~P~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i--------~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++|++||++.+.. .+.||++++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 799999999999999888999999999986531 368999999999998776643
Q ss_pred HHHHHHHhCCC
Q 044602 320 ESMEYFSSLGF 330 (674)
Q Consensus 320 ~~~~~f~~~g~ 330 (674)
++++..|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34454453
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=130.91 Aligned_cols=77 Identities=27% Similarity=0.384 Sum_probs=66.7
Q ss_pred ccCccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-C-cEEEEEecCCchHHHhh
Q 044602 230 FIKGISGGERKRTSI------GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-A-G-RTVITTIHQPSSRMFHM 300 (674)
Q Consensus 230 ~~~~LSgGerqRv~i------A~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~-g-~tvi~~~H~~~~~i~~~ 300 (674)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++...+ . | .|+|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 456899999999975 5899999999999999999999999999999986443 3 3 48999999975 4678
Q ss_pred cCEEEEEe
Q 044602 301 FDKLLLIS 308 (674)
Q Consensus 301 ~D~v~~L~ 308 (674)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-09 Score=105.73 Aligned_cols=57 Identities=21% Similarity=0.389 Sum_probs=43.1
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 243 SIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 243 ~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+++++|..+|+++++|||. |.++...++ +.+..|..++.++|.++. ....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778999999999999996 665443333 344579999999999764 46789887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=115.84 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=108.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
..+++++ +.+.+||.++|+|+||+|||||++.|+|... +..|.|.+.|+.. .+|.|.+
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg--------------------~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG--------------------REVKDFI 201 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc--------------------ccHHHHH
Confidence 3578875 9999999999999999999999999998764 4467666555431 3666655
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-------VDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-------~~P~illLDEPT 261 (674)
.... ..-|+.+. ..+ ....+-|.|+|+|++.+.+.+ .++-++++||||
T Consensus 202 ~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 202 RKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 4211 11111110 011 123478999999999998887 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
+..|+. +++-..+.+....|.+..+.+|. + ++++|.-..++|.|...++.
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 999996 55555555555458888888884 2 33455555678888766654
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.2e-10 Score=121.65 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=45.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
-+++|++||+++++||+++|+|||||||||||+ +|+..++..|+|.++|+++.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 357999999999999999999999999999999 66665543348999999875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=102.78 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=96.7
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHHc-CCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L~G-~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
-|+.+ .+-+++|.++.|.|++|+|||||...++- .... . +.+.|+..+. +..+-+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g---------------~~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--G---------------KKVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--C---------------CEEEEEEcCC------CHHHHH
Confidence 35554 56799999999999999999999988752 1111 1 2344554421 333322
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV--DPSLLLLDEPTSG--- 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~--~P~illLDEPTsg--- 263 (674)
.-..... ..- ++.+. -|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 70 ~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 70 KQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred HHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 2111110 000 00100 010111111111 112357788999999999998 9999999999965
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCch------HHHhhcCEEEEEe
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSS------RMFHMFDKLLLIS 308 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 308 (674)
.|......+++.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 136 ~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 136 AEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 44555556666677777779999999998643 1456677777776
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-09 Score=133.35 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=67.2
Q ss_pred ccCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 230 FIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5899999999764 57899997
Q ss_pred EEe
Q 044602 306 LIS 308 (674)
Q Consensus 306 ~L~ 308 (674)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=102.33 Aligned_cols=136 Identities=22% Similarity=0.407 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC-EeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g-~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
|++..|+||+|+|||||.--++--. .+|.=..++ .... -..++-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v---a~G~~~~g~~~~~~--~~~~Vlyi~~Ed------------------------ 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM---ALGKNLFGGGLKVT--EPGRVVYLSAED------------------------ 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH---hcCccccCCccccC--CCceEEEEECCC------------------------
Confidence 6788999999999999998876221 122211111 1110 123455554221
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC--
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGY----------------EILVDPSLLLLDEPTS-- 262 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~----------------aL~~~P~illLDEPTs-- 262 (674)
+..+..++++.+.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 22334456666666666544333321 2245556555443 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 263 ----GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 263 ----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
.+|+.....+++.|++++++ |.|||+++|...
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999998865 899999999863
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=123.54 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=67.4
Q ss_pred cCccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecCCchHH
Q 044602 231 IKGISGGERK------RTSIGYEILVD-----P-SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR-TVITTIHQPSSRM 297 (674)
Q Consensus 231 ~~~LSgGerq------Rv~iA~aL~~~-----P-~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 297 (674)
+..||||||+ |+++|++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-- 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-- 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--
Confidence 4689999999 89999998864 3 67999999999999999999999999976664 89999999753
Q ss_pred HhhcCEEEEEeCC
Q 044602 298 FHMFDKLLLISEG 310 (674)
Q Consensus 298 ~~~~D~v~~L~~G 310 (674)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5779999999743
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.7e-09 Score=127.99 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=68.1
Q ss_pred cCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 231 IKGISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+..||||||++++||++++. +|++++||||+++||+.....+.+.|+++++ +.++|++||++. +...||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 56899999999999999985 6799999999999999999999999999865 578999999974 5789999988
Q ss_pred EeC
Q 044602 307 ISE 309 (674)
Q Consensus 307 L~~ 309 (674)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 763
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=84.67 Aligned_cols=118 Identities=29% Similarity=0.304 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
++..+.|.||+|+||||+++.|+..+.....+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-----------------LDQLL------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC-----------------HHHHH-------------
Confidence 367899999999999999999998764321134555443321100 00000
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ------ 274 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~------ 274 (674)
.. .... ......+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 -------------~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -------------LI---IVGG-------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -------------hh---hhhc-------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 00 0000 112577888888888888888899999999999999998887765
Q ss_pred HHHHHHhCCcEEEEEec
Q 044602 275 VLQKVAKAGRTVITTIH 291 (674)
Q Consensus 275 ~L~~l~~~g~tvi~~~H 291 (674)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22222335788999988
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=111.91 Aligned_cols=151 Identities=22% Similarity=0.255 Sum_probs=92.7
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.++++.+..+++|++++++||||+||||++..|++++... .|. +++++|.+|. ...++.|+|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~-------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR-HGA-------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh-cCC-------------CeEEEEeCCc---cchhHHHHHH
Confidence 3567778788899999999999999999999999865221 221 3588898886 3468999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK-RTSIGYEILVDP-----SLLLLDEPTSG 263 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~iA~aL~~~P-----~illLDEPTsg 263 (674)
+.+.... ++........+...+..+|.+.....|- +...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 307 ~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 307 IYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 8765431 1111111223334445566655444432 32222322 234444555554 68999999887
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIH 291 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H 291 (674)
..+.+.++.....+.+-++.|+
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeC
Confidence 3344555555444555444554
|
|
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-06 Score=88.68 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=121.4
Q ss_pred hhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 044602 493 EKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFG-AA 571 (674)
Q Consensus 493 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~-a~ 571 (674)
++..+.|=..+...+ ..+++++.+.......+...+...++.+..|. .....+..+..+..+......++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 45677777777666666666666666666663 3344566666666777777888888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCccccCCCCchHHHHH
Q 044602 572 VLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQEVWV 649 (674)
Q Consensus 572 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~~~~~~~~~~~i 649 (674)
.++.+.+..++.++..++..++|.+.| .+|.|++|+.+++|.+|+.+++-.... ... ..+..|.++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~----~~~------~~~~~~~~~~~ 263 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYL----GGW------RNDGIWISLLI 263 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHh----CCC------chhhHHHHHHH
Confidence 677888888988999999999999999 899999999999999999999875410 000 11226889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 044602 650 LLGMALAYRLCAYFCLRKRINK 671 (674)
Q Consensus 650 l~~~~~~~~~l~~~~L~~~~~~ 671 (674)
++++.+++.+++...+|++.+.
T Consensus 264 l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 264 LLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999887654
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-08 Score=103.41 Aligned_cols=124 Identities=22% Similarity=0.376 Sum_probs=77.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
.+++.++.|.||+||||||+++.|.+.+..+..|.|...+.++........+.+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q------------------------ 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQ------------------------ 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEc------------------------
Confidence 45788999999999999999999997654333566655433321100000000100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
..+|. ...+ =.-+++++|-.+|+++++||+. |+++....++
T Consensus 175 -------------------------~evg~---~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---- 215 (343)
T TIGR01420 175 -------------------------REVGL---DTLS----FANALRAALREDPDVILIGEMR---DLETVELALT---- 215 (343)
T ss_pred -------------------------cccCC---CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence 00110 0011 1123567888999999999997 8888865444
Q ss_pred HHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 279 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
.+..|.+|+.++|-.+. ....+|++-|
T Consensus 216 aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 34569999999999764 4566777654
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-07 Score=110.15 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 244 IGYEILVDPSLLLLDEPTSGL-DSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 244 iA~aL~~~P~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888999999999999999 7999999999999998889999999999865
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-09 Score=120.84 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=101.4
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHH--HcCCCCCCccEEEECCEeCChhcc---ccEEEEccCCCCCCCCCH
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIV--GGRLTDDVKGNITYNDIPYNPALK---RRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L--~G~~~~~~~G~I~~~g~~~~~~~~---~~igyv~Q~~~l~~~lTV 184 (674)
-|+.+ .+=+.+|..+.|.||+|||||||..-. .|.... -+.-+++...+-.++++ +..|+-.|+..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~-ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g---- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF-DEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG---- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC----
Confidence 35664 567999999999999999999998866 343211 14456665543322222 23454443211000
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG--YEILVDPSLLLLDEPTS 262 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA--~aL~~~P~illLDEPTs 262 (674)
++.+ .. .... ...+.+++.+++.+..+... ..+|+|++|||.|+ .+|..+|+..
T Consensus 84 --~l~~---~~---~~~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 84 --KLFI---LD---ASPD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --ceEE---Ee---cCch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 0000 00 0000 00112334445544444433 47999999999999 6666665543
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH--------HHhhcCEEEEEe
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR--------MFHMFDKLLLIS 308 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~ 308 (674)
...+..+.+.++.+++.|.|+|+++|+.... ...++|.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986421 145789999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-06 Score=82.52 Aligned_cols=128 Identities=9% Similarity=-0.020 Sum_probs=92.9
Q ss_pred hhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Q 044602 490 FPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVP--CFFLTLFAILLVAITSQGAGEL 567 (674)
Q Consensus 490 f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~--~F~~f~~~~~l~~~~~~s~~~~ 567 (674)
.-.|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+++ |.+.... ..+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888777766 7889999999999999999888777777544 8877632 2223333334444455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHh
Q 044602 568 FGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLL 620 (674)
Q Consensus 568 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal 620 (674)
++...++.+..+ ...++..++.+.+|.+.| ++|+|++|+.+++|++|+.+++
T Consensus 92 ~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 92 MALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 655556655444 346667777788888888 9999999999999999999986
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-08 Score=102.21 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=33.7
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHH--cCCCCCCccEEEECCE
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIVG--GRLTDDVKGNITYNDI 159 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L~--G~~~~~~~G~I~~~g~ 159 (674)
-|+++ .+-+++|++++|.||+|+|||||...++ +.. . -++.+++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~-g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-D-GDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-c-CCeEEEEEcc
Confidence 35553 5679999999999999999999988655 322 2 2445666553
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=103.71 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 233 GISGGERKRTSIGYEILV---------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~---------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |.++++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999753 779999999864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-07 Score=92.10 Aligned_cols=84 Identities=21% Similarity=0.133 Sum_probs=62.4
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-hhccccEEEEccCC--CCCCCCCHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDD--VLLPQLTVEET 187 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~--~l~~~lTV~e~ 187 (674)
..+=+.+.+++|+.++|+||||||||||+++|+|.++ +..|.|.+.+..-. ...+..++++.|.+ ...+..|+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 4455566789999999999999999999999999874 56899999774321 12234567766553 45677899999
Q ss_pred HHHHHhhc
Q 044602 188 LVFAAFLR 195 (674)
Q Consensus 188 l~~~~~~~ 195 (674)
+....+..
T Consensus 93 l~~~lR~~ 100 (186)
T cd01130 93 LRSALRMR 100 (186)
T ss_pred HHHHhccC
Confidence 88776543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=101.60 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 233 GISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
-+|+||+|++++|..|+ .+|++++||||+++||...+..+.+.|.+.. .++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCC-----CCCCce
Confidence 48999999999999999 8999999999999999999999998886532 344444443 346899
Q ss_pred EEEEeCCEEEEecC
Q 044602 304 LLLISEGYPVYYGK 317 (674)
Q Consensus 304 v~~L~~G~iv~~G~ 317 (674)
++.+++|++.-..|
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999998754443
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-07 Score=104.58 Aligned_cols=85 Identities=24% Similarity=0.242 Sum_probs=66.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC--ccEEEECCEeCCh----------hccccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV--KGNITYNDIPYNP----------ALKRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~--~G~I~~~g~~~~~----------~~~~~igyv~Q~~ 176 (674)
..+++++ +++.+||.++|+|+||+|||||+++|+|...+.. -|.|-.+|.++.+ ..|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999764331 1444445544431 1244799999999
Q ss_pred CCCCCCCHHHHHHHHHhh
Q 044602 177 VLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~ 194 (674)
..+..+++.+++.+.+..
T Consensus 222 s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 222 SPLMRIKATELCHAIATY 239 (434)
T ss_pred ChhhhHHHHHHHHHHHHH
Confidence 999999999998876643
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-07 Score=99.40 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=108.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------------hccccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------------ALKRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------------~~~~~igyv~Q~~ 176 (674)
..+++++ +.+.+||.++|+|+||+|||||+++|+|... +..|.+...|..-++ .+++.+-++.+.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 5689999 9999999999999999999999999998764 446777666554321 1233344444433
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCH-HHHHHHHHHHHHhhCCCEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG-GERKRTSIGYEILVDPSLL 255 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~iA~aL~~~P~il 255 (674)
. ++.+-..-+ .... .+.|.+...|- |-.+= ..+++- -|-+| .|+ +
T Consensus 229 ~-----~p~~r~~~~-----------~~a~-t~AE~frd~G~----~Vll~---~DslTr~A~A~R-Eis---------l 274 (440)
T TIGR01026 229 Q-----SPLLRLKGA-----------YVAT-AIAEYFRDQGK----DVLLL---MDSVTRFAMAQR-EIG---------L 274 (440)
T ss_pred C-----CHHHHHHHH-----------HHHH-HHHHHHHHCCC----CEEEE---EeChHHHHHHHH-HHH---------H
Confidence 2 222211100 0001 11222222231 11110 012221 11222 111 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 256 LLDEP--TSGLDSTSANKLIQVLQKVAKAGR-------TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 256 lLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.+.|| +.|+|+.....+-+++.+....+. ||++.+||.. ..++|++.-+.+|+++..++..+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 35675 459999999999999999876667 8888899975 356899999999999999877653
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-07 Score=109.32 Aligned_cols=78 Identities=31% Similarity=0.433 Sum_probs=69.2
Q ss_pred ccCccCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 230 FIKGISGGERKRTSIGYEIL------VD--PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~------~~--P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+..|||||+=.++||.+|+ .+ =+.+||||||..||+.+...+++.|..+...+++|++|||++ ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887765 35 599999999999999999999999999988899999999995 467899
Q ss_pred CEEEEEeC
Q 044602 302 DKLLLISE 309 (674)
Q Consensus 302 D~v~~L~~ 309 (674)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-07 Score=109.21 Aligned_cols=137 Identities=20% Similarity=0.240 Sum_probs=82.7
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.|-+|+++. +.+.++.|.|||++||||+||.++-..--..-| .|||-+..- +++.+.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------~~VPa~~a~---i~~~d~I- 653 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------SFVPAESAR---IGIVDRI- 653 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------CceeccceE---ecccCee-
Confidence 355667776 667899999999999999999987321000011 123222110 1111111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV--DPSLLLLDEP---TSGL 264 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~--~P~illLDEP---TsgL 264 (674)
..++|-. |. ...++|-=+.....++..|-. +++++++||| |+.+
T Consensus 654 -----------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 654 -----------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred -----------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence 1111111 11 113577666666666666554 8999999999 9999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCE
Q 044602 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|..+ .....++.+.+. |.+++++||.. ++.+++++
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 9444 345566666665 58999999993 56777775
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-07 Score=92.74 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh-cCCCCCCH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL-RLPGNMNR 202 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~-~~~~~~~~ 202 (674)
+++|.||||||||||.+.|++.+ . .|. +.++.+|+... .++..+........ ..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~--~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~-- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-G--NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF-- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C--CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc--
Confidence 47999999999999999999876 1 222 33444444322 22333322211100 011111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 203 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
..+...+.++.+...+..+.++ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 --~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 --DFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --cHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1223445666665443333332 3678888776555 5688999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=108.52 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=91.5
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 044602 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 115 vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~ 194 (674)
+++..+++++++|+|++|+|||||++.+.+.+....+|.+++++..+.... .. +-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~~---- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMKL---- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-hh--cccccccc-------cchhH----
Confidence 456778899999999999999999999987765556899988764322100 00 00010000 00000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044602 195 RLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274 (674)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~ 274 (674)
....+.+.++++..++. + ..+ ++.|+|+ ..++-+|+||+- |.. ..++
T Consensus 266 --------~l~~~~l~~il~~~~~~------~-----~~~-~~~~~~L------~~krvLLVLDdv----~~~---~~l~ 312 (1153)
T PLN03210 266 --------HLQRAFLSEILDKKDIK------I-----YHL-GAMEERL------KHRKVLIFIDDL----DDQ---DVLD 312 (1153)
T ss_pred --------HHHHHHHHHHhCCCCcc------c-----CCH-HHHHHHH------hCCeEEEEEeCC----CCH---HHHH
Confidence 01112233444433331 1 122 5666663 355567788984 433 3344
Q ss_pred HHHHHH---hCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHHHHHHHhCCC
Q 044602 275 VLQKVA---KAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARESMEYFSSLGF 330 (674)
Q Consensus 275 ~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 330 (674)
.|+... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|...-|
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 444432 248899999999643 2222 577665531 145678888876544
|
syringae 6; Provisional |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=96.34 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=53.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC---EeCCh--------hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNP--------ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g---~~~~~--------~~~~~igyv~Q~~~ 177 (674)
..+++.++ .+.+||.++|+||||+|||||+++|++... +..|.|.+.| .++.. ..++.+++|+|.+.
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 56888886 999999999999999999999999998764 4579888864 44421 12457999999764
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-07 Score=89.25 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hcc-ccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALK-RRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~-~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. ..+ ...|+.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999997632 5788877643 122 2456777775555555666666543
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=109.75 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=53.1
Q ss_pred cCccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 231 IKGISGGERKRTS----IGYE--------ILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 231 ~~~LSgGerqRv~----iA~a--------L~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5645 55899999999999999999999999999887 78999999873
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-05 Score=92.71 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 247 EILVDPSLLLLDEPTSGLD-STSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 247 aL~~~P~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3557899999999999999 888999999999998889999999999854
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-05 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=33.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-+.|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999899999999999999999999999988743
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-05 Score=91.66 Aligned_cols=48 Identities=29% Similarity=0.287 Sum_probs=42.9
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 248 ILVDPSLLLLDEPTSGLD-STSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 248 L~~~P~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 345899999999999999 788999999999998889999999999753
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.001 Score=68.61 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=96.1
Q ss_pred HHHHHhcCCCC--------chHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccCC---CCCHHHHHHHHHHHHHHHHHH
Q 044602 496 YLVKERKADMY--------RLSVYYVCSTLCDMVAHVFYPT---IFMVIVYFMAGF---KRTVPCFFLTLFAILLVAITS 561 (674)
Q Consensus 496 v~~rE~~~g~Y--------~~~ay~la~~l~~lp~~~~~~~---if~~i~Y~m~gl---~~~~~~F~~f~~~~~l~~~~~ 561 (674)
.+.+||++|.. +...++++|.+.-.-..++..+ ++....++. |. ..+...++..++..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHH
Confidence 34566666654 4577899999988755443322 122222222 22 224556665556666777788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCC--hhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCcccc
Q 044602 562 QGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYY-VQHI--PKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTV 638 (674)
Q Consensus 562 ~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~ 638 (674)
.++|.++|+++++...|..++..+... ++.|+- +.++ |++.+|+.|+||..|-.+.. . | .
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~-~--g--------~---- 213 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS-R--G--------V---- 213 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH-c--C--------c----
Confidence 899999999999988886655433222 222321 2344 89999999999987754433 1 1 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 044602 639 NLSGGLQEVWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 639 ~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 668 (674)
-.+.|+...+.+.+.+..++...+++|
T Consensus 214 ---i~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 214 ---IDSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred ---ccHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 015778888888888888888877664
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=93.13 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC---EeCCh----hcc---ccEEEE-----c
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNP----ALK---RRIGFV-----T 173 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g---~~~~~----~~~---~~igyv-----~ 173 (674)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+....|.|.+.| .++.+ .++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4589988 999999999999999999999999999876333346777755 44421 122 235555 8
Q ss_pred cCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 174 QDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 174 Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
|++. +.+.+ +...+.-..+.+........+...++.+++++++|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8763 33333 444443332222111123356677888999999884
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-06 Score=90.46 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=70.6
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-hhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++.... ...++.+++++|+..++.+ ....++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 445555678999999999999999999999999774 46899999875432 2345679999999888765 55555544
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
... ...-........++.+.+...+|.+.
T Consensus 263 ~~~-----~~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 263 WDA-----EDGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred cCc-----hhhHHHhHHHHHHHHccCCCCCCCCC
Confidence 310 00011122334555565666666554
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=72.99 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEecCCc
Q 044602 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-----AGRTVITTIHQPS 294 (674)
Q Consensus 239 rqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 294 (674)
++..........++.++++||.-.. +......+.+.+..... .+.++|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445555666778999999998765 56667778888877653 4778888888643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.3e-06 Score=67.10 Aligned_cols=37 Identities=38% Similarity=0.622 Sum_probs=29.7
Q ss_pred eeeeEEEEeC-CeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 112 LKGITGSICP-GEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 112 L~~vs~~i~~-Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++-++++.+ |++++|.||||||||||++++.=.+.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777775 569999999999999999999755544
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.1e-05 Score=74.74 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCccccccccCCccCccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTS--IGYEILV-DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 208 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--iA~aL~~-~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
.+.+.++..+++-. .+++ ....+|+||+|++. +++.+-. +++++ |||++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~i---iv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVL---IVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEE---EEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 34455565554311 1221 22358999999987 5555433 34443 99999999999999999887764
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=90.06 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=42.9
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCcEEEEEecCCch-------HHHhhcCEEEEEeCCE
Q 044602 250 VDPSLLLLDEPTSGL----D-----STSANKLIQVLQKVAK-AGRTVITTIHQPSS-------RMFHMFDKLLLISEGY 311 (674)
Q Consensus 250 ~~P~illLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 311 (674)
.+|+++++|.-++=. + ....++++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 1224455666777765 59999999997432 1467899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=70.28 Aligned_cols=48 Identities=31% Similarity=0.537 Sum_probs=36.6
Q ss_pred cCccCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 231 IKGISGGERK-RTSIGYEI------LV------DPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 231 ~~~LSgGerq-Rv~iA~aL------~~------~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
..++|||||| .+.++.++ -. .|++++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3489999994 44444332 22 3799999999999999999999999874
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-06 Score=86.38 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
++|++++|.||||||||||++.|++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999998763
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-06 Score=84.17 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=49.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE----EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN----ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~----I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~ 194 (674)
-.+..+++|.||||||||||.+.|++.+.+ ..|. |.+++.......++..|++++.+. ...+++.+.+.+...+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLRRL 107 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh-ccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHHHH
Confidence 345789999999999999999999998854 4677 555554333333445677766432 3455676666554433
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-06 Score=84.10 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=43.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD 175 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~ 175 (674)
++|++++|+|+||||||||.+.|++++.+...|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67899999999999999999999987754445789999987654333345555554
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-05 Score=92.45 Aligned_cols=110 Identities=24% Similarity=0.331 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCC-------CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDD-------VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~-------~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~ 194 (674)
.+.++|+||||+|||||++++.+..... ..+-|.+||..+....+. + ++-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~----------------i-~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE----------------V-TNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH----------------H-hHHhcCC--
Confidence 4579999999999999999998765221 123356665443110000 0 1111110
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044602 195 RLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274 (674)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~ 274 (674)
. .+...+.+.+.++..|+.+..+..+ ..+||| +|+||| +..||+..+..+.+
T Consensus 236 -----~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----V-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----c-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 1 1111234555678888876665544 478888 999999 79999999999999
Q ss_pred HHHH
Q 044602 275 VLQK 278 (674)
Q Consensus 275 ~L~~ 278 (674)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.9e-06 Score=81.09 Aligned_cols=37 Identities=35% Similarity=0.529 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
|++++|+||||||||||++.|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~----~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT----QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC----eEEEcCEECC
Confidence 789999999999999999999986532 5777776554
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=73.18 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=34.6
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCcEEEEEecCCc
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~-~g~tvi~~~H~~~ 294 (674)
+.+..++|+||.-.|=++.....+.. .++.+.+ .+..+|++||...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 45678999999999999999887755 4566776 4888999999964
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0029 Score=66.05 Aligned_cols=233 Identities=17% Similarity=0.185 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHh-hcchh--HH---HHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 414 WWDQFHIISRRTFRER-WRDYF--DK---LRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAV 487 (674)
Q Consensus 414 ~~~Q~~~L~~R~~~~~-r~~~~--~~---~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i 487 (674)
.++....|.+|+.+.+ ||... .+ --+++.++++++.|.++-+-+. +. -..--.|.+.+..... +...+.
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~-~~-~~~l~~G~~~w~f~~~---~i~~~~ 90 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL-NF-LAYLLAGLILWFFFSE---AISEGA 90 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ch-HHHHHHHHHHHHHHHH---HHHhHH
Confidence 4567788899999985 55432 22 2456666777777777643211 11 2233334433322211 122335
Q ss_pred HhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 488 YVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGEL 567 (674)
Q Consensus 488 ~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~ 567 (674)
..+.++..+++|-+ .+++.+.+++++.++--..+..++....+-+.-+.+ ...+..+...+.+..+.+.+++.+
T Consensus 91 ~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~ 164 (263)
T COG1682 91 GSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLI 164 (263)
T ss_pred HHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665432 388899999999998776666655555555544443 345555666667777788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cCCCCCCCCCCccccCCCCc
Q 044602 568 FGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RGCRNLQSSPSFDTVNLSGG 643 (674)
Q Consensus 568 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~gc~~~~~~~~~~~~~~~~~ 643 (674)
+|.++.-..--..+.+.++-+++..+|.+=+ ++|+-++|+.++||+.+-.|..=.. .|- ...
T Consensus 165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~--------------~~~ 230 (263)
T COG1682 165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD--------------VPD 230 (263)
T ss_pred HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC--------------ccc
Confidence 8888766544455556666677777776555 8999999999999999999886544 110 113
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044602 644 LQEVWVLLGMALAYRLCAYFCLRKRINK 671 (674)
Q Consensus 644 ~~~~~il~~~~~~~~~l~~~~L~~~~~~ 671 (674)
+.+.+..++..++..+++++..++-.++
T Consensus 231 ~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 231 LHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566666666777766654443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 674 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-15 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-15 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-15 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-15 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-15 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-15 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-15 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-14 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-13 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-13 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-13 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-13 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-12 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-12 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-12 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-12 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-12 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-12 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-12 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-12 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-12 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-12 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-11 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-11 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-11 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-11 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-09 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-09 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-08 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-08 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-08 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-07 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 6e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-07 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 8e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 7e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 9e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 104 LDKDYKHI--LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
L K LKGI+ I GEI L+GP+G+GKTT L+I+ + G +T ++
Sbjct: 21 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNV 79
Query: 160 PYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
P +++ I ++ ++ + E L F A + + V+ + GL
Sbjct: 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGL 136
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
RV S G ++ I ++V+P L +LDEPTSGLD +A ++ ++L++
Sbjct: 137 GEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 279 VAKAGRTVITTIH 291
++ G T++ + H
Sbjct: 192 ASQEGLTILVSSH 204
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 18/232 (7%)
Query: 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-----TDDVKGNI 154
Q+ K K ILK I+ I G+ L G +G+GKTTLL I+ T ++ G +
Sbjct: 25 DQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM 84
Query: 155 TYNDIPYNPALKRRIGFVTQD--DVLLPQLTVEETLVFAAF--LRLPGNMNRQQKYARVQ 210
+++ IGFV+ + V + ++ AF + + +++ + +
Sbjct: 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAH 143
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+LK +G+ +G +S GE++R I ++ P +L+LDEP +GLD +
Sbjct: 144 QLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARE 198
Query: 271 KLIQVLQKVAKAGR--TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
L+ +L ++ + +I H + F K+LL+ +G + G +
Sbjct: 199 SLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQQGAVED 249
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-33
Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 104 LDKDY-KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162
L Y K +L+ IT +I G ++ GP+G GKTTLLK + L KG I YN +P
Sbjct: 16 LSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPIT 74
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
K +I F+ ++ ++ +++VE+ L A L + + + L+ + +
Sbjct: 75 KV-KGKIFFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKN--EIMDALESVEVLD-L 127
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK- 281
+ + +S G +R + +LV+ + +LD+P +D S +K+++ + ++ K
Sbjct: 128 KKK-----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEG 310
G +I++ + S D + +
Sbjct: 183 KGIVIISSREELS-----YCDVNENLHKY 206
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-32
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 34/219 (15%)
Query: 104 LDKDYK--HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
+ K + ILKGI+ S+ GE ++++G SGSGK+TLL I+G L +G +
Sbjct: 10 IKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEV 68
Query: 162 NP----AL----KRRIGFVTQDDVLLPQLT----VEETLVFAAFLRLPGNMNRQQKYARV 209
+ L R++GFV Q L+P+LT V ++ +++ R
Sbjct: 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-------GKPKKEAKERG 121
Query: 210 QMILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268
+ +L ELGL ++ +SGGE++R +I + +P LL DEPT LDS +
Sbjct: 122 EYLLSELGLGDKLSR------KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 269 ANKLIQVLQKVAKAGRTVITTIHQP-----SSRMFHMFD 302
+++ + K+ + G +++ H+ + R M D
Sbjct: 176 TKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKD 214
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 31/222 (13%)
Query: 104 LDKDYK------HILKGITGSICPGEILALMGPSGSGKTTLLKIVGG--RLTDDVKGNIT 155
+ K YK + LK + +I GE +++MGPSGSGK+T+L I+G + T +G +
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVY 63
Query: 156 YNDIPYNP------ALKRR--IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA 207
++I N RR IGFV Q L+P LT E + + G M+ +++
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK 123
Query: 208 RVQMILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
R LK L ER + + +SGG+++R +I + +P ++L D+PT LDS
Sbjct: 124 RALECLKMAELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQPTWALDS 178
Query: 267 TSANKLIQVLQKV-AKAGRTVITTIHQP-----SSRMFHMFD 302
+ K++Q+L+K+ + G+TV+ H R+ ++ D
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+ + + + G+ILA++G +G GK+TLL ++ G +G I + + IG
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIE---------VYQSIG 69
Query: 171 FVTQDDVLLPQLTVEETLVF--AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
FV Q +V + ++ + + Y L L L
Sbjct: 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-YQVAMQALDYLNLTHLAKREFT- 127
Query: 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVI 287
+SGG+R+ I I + L+LLDEPTS LD + + ++ +L +A++ TV+
Sbjct: 128 ----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
T HQP+ + + +K LL+++ +G+ R
Sbjct: 184 FTTHQPNQ-VVAIANKTLLLNKQN-FKFGETRN 214
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 29/226 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNP-A 164
L ++G + GEIL L+GP+G+GK+TLL + G + KG+I + P ++
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATK 70
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
L +++Q V L + + + + L L+
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL---TLHQHDK-----TRTELLNDVAGALALDDKLGR 122
Query: 225 RVGGGFIKGISGGERKRTSI-------GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
+SGGE +R + + LLLLDEP + LD + L ++L
Sbjct: 123 STN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 278 KVAKAGRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGKARESM 322
+++ G ++ + H + + + L+ G + G+ E +
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRH--AHRAWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 9e-27
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 37/225 (16%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
L+ G I GE++ ++GP+G GKTT +K++ G +G + ++
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDL------- 417
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
+ + Q + TV E L +N + LK LG+
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELL----SKIDSSKLNSNFYKTEL---LKPLGIIDLYDRN 468
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGR 284
V + +SGGE +R +I +L D + LLDEP++ LD + + ++ + K +
Sbjct: 469 V-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 285 TVITTIH------QPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
T + H S R+ EG P +G+A M
Sbjct: 524 TALVVEHDVLMIDYVSDRLIVF--------EGEPGRHGRALPPMG 560
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 8e-22
Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 39/255 (15%)
Query: 103 SLDKDYKH------ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VK 151
LD+D H + + G ++ ++GP+G+GKTT +KI+ G+L +
Sbjct: 92 QLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 152 GNITYNDIPYNPA----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA 207
+ N + + G + V+ PQ + L A ++ + + +
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRP--VVKPQYV--DLLPKAVKGKVRELLKKVDEVG 207
Query: 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
+ + ++KEL LE R + +SGGE +R +I +L DEP+S LD
Sbjct: 208 KFEEVVKELELEN-VLDR----ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMF---HMFDKLLLISEGYPVYYGK------A 318
K+ +V++++A G+ V+ H + ++ D + ++ G P YG
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEH----DLAVLDYLSDVIHVV-YGEPGVYGIFSKPKGT 317
Query: 319 RESMEYFSSLGFIPE 333
R + F G++ +
Sbjct: 318 RNGINEFLQ-GYLKD 331
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-26
Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 42/265 (15%)
Query: 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDY-KHILKGITGSICPGEILAL 127
+LK E+V ++ K V+ + + L KDY L+ G I GE++ +
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 128 MGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187
+GP+G GKTT +K++ G +G I ++ + + Q + TV E
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEPT-EGKIEWDL---------TVAYKPQYIKADYEGTVYEL 367
Query: 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE 247
L +N +LK LG+ V +SGGE +R +I
Sbjct: 368 L----SKIDASKLNSNFYKTE---LLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415
Query: 248 ILVDPSLLLLDEPTSGLDSTS---ANKLIQVLQKVAKAGRT--VIT----TIHQPSSRMF 298
+L D + LLDEP++ LD ++ I+ L + K +T V+ I S R+
Sbjct: 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLM 473
Query: 299 HMFDKLLLISEGYPVYYGKARESME 323
EG P YG+A M
Sbjct: 474 VF--------EGEPGKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-19
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 24/199 (12%)
Query: 104 LDKDYKH------ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-------TDDV 150
L++D H + + G ++ ++GP+G+GK+T +KI+ G+L D
Sbjct: 23 LEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 151 KGNITYNDIP--YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR 208
G I N K + G + V+ PQ + + A ++ + + + +
Sbjct: 83 DGVIRAFRGNELQNYFEKLKNGEIRP--VVKPQYV--DLIPKAVKGKVIELLKKADETGK 138
Query: 209 VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268
++ ++K L LE I+ +SGGE +R +I +L + + DEP+S LD
Sbjct: 139 LEEVVKALELENVLER-----EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 269 ANKLIQVLQKVAKAGRTVI 287
+ ++++++ G++V+
Sbjct: 194 RLNAARAIRRLSEEGKSVL 212
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 39/228 (17%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-PALKR 167
K L+ ++ I GE L + G +GSGK+TLL+IV G + G++ Y+ ++R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERKKGYEIRR 78
Query: 168 RIGFVTQDDVLLP--QL---TVEETLVFAAFLRLPGNMN-RQQKYARVQMILKELGLERC 221
IG Q P Q V + + FA N + V+ ++ +GL+
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFA-----VKNFYPDRDPVPLVKKAMEFVGLDF- 128
Query: 222 RHTRVGGGFIK----GISGGERKRTSI-GYEILV-DPSLLLLDEPTSGLDSTSANKLIQV 275
F +SGGE++R +I ++V +P +L+LDEP GLD L+++
Sbjct: 129 ------DSFKDRVPFFLSGGEKRRVAIAS--VIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 276 LQKVAKAGRTVITTIHQPSSRM---FHMFDKLLLISEGYPVYYGKARE 320
++K G+TVI H + + D+++++ +G V+ G E
Sbjct: 181 VEKWKTLGKTVILISHD----IETVINHVDRVVVLEKGKKVFDGTRME 224
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 9e-26
Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 35/226 (15%)
Query: 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
K L G GEI+ ++GP+G GKTT +I+ G +T D +G++T
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPE-------- 328
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
K+ + + Q TV++ +L + + K L L R +
Sbjct: 329 KQILSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGR 284
V +SGGE ++ I + + L +LD+P+S LD + + +++V +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 285 TVITTIH------QPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324
H + R+ +G P G A +
Sbjct: 438 VTFIIDHDLSIHDYIADRIIVF--------KGEPEKAGLATSPVTL 475
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-22
Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 30/252 (11%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRL---TDDVKGNITYNDIPYNPALKRRIGFVTQD-- 175
IL ++G +G GKTT+LKI+ G + D + +++ K I ++
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE-IYNYFKELY 82
Query: 176 -DVLLPQLTVE--ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK 232
+ L ++ E + + + + + + + L + + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN-K----DAN 137
Query: 233 GISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+SGG +R + +L + + + D+P+S LD + + ++++ K + VI H
Sbjct: 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDH- 195
Query: 293 PSSRMF---HMFDKLLLISEGYPVYYGK------ARESMEYFSSLGFIPEIAMNPAEFLL 343
+ ++ D + +I G YG+ AR + F G++P M +
Sbjct: 196 ---DLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGINNFLK-GYLPAENMKIRPDEI 250
Query: 344 DLATGQVTDISV 355
+V+D+ +
Sbjct: 251 KFMLKEVSDLDL 262
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 43/298 (14%)
Query: 42 AYLRNRYSEIDIVDESSSIE--KDRPLPIFLKFEDV---EYKVRINKAASDSNPVKSVVS 96
+ S +V +S+ + L + E++ ++ A + + S
Sbjct: 292 CIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSAS 351
Query: 97 KVASQLSLDKDY-KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT 155
+ S SL K +L G EIL +MG +G+GKTTL+K++ G L D +G
Sbjct: 352 RAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDI 410
Query: 156 YNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
K + Q TV + F ++ G Q V +K
Sbjct: 411 P---------KLNVSMKPQKIAPKFPGTVRQLF----FKKIRGQFLNPQFQTDV---VKP 454
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L ++ V + +SGGE +R +I + + + L+DEP++ LDS +V
Sbjct: 455 LRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509
Query: 276 LQK-VAKAGRT--VIT----TIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326
+++ + +T ++ + ++ EG P AR +
Sbjct: 510 IRRFILHNKKTAFIVEHDFIMATYLADKVIVF--------EGIPSKNAHARAPESLLT 559
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-21
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIV-------GGRLTDDVKGNITYNDIPYNPALKRRIG 170
+ PG++L L+G +G GK+T LKI+ GR D + +
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 171 FVTQDD--VLLPQ------LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
+ D ++ PQ ++ + L + ++ V+ +K L LE
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVL 215
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
R I+ +SGGE +R +IG + + + + DEP+S LD Q+++ +
Sbjct: 216 K-R----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 283 GRTVITTIHQPSSRMF---HMFDKLLLISEGYPVYYGKARESM 322
+ VI H + ++ D + +I G P YG
Sbjct: 271 TKYVICVEH----DLSVLDYLSDFVCII-YGVPSVYGVVTLPA 308
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 40/231 (17%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----- 163
H LKGI +I GE+ A++G +G GK+TL + G L G I +++ P +
Sbjct: 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGI 79
Query: 164 -ALKRRIGFVTQDDVLLP--QL---TVEETLVFAAFLRLPGNM--NRQQKYARVQMILKE 215
L+ IG V QD P QL +V + + F NM + RV LK
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG-----AVNMKLPEDEIRKRVDNALKR 130
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSI-GYEILV-DPSLLLLDEPTSGLDSTSANKLI 273
G+E + +S G++KR +I G +LV +P +L+LDEPT+GLD ++++
Sbjct: 131 TGIEHLKDK-----PTHCLSFGQKKRVAIAG--VLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 274 QVLQKVAK-AGRTVITTIHQPSSRM---FHMFDKLLLISEGYPVYYGKARE 320
++L ++ K G T+I H + D + ++ EG + G +E
Sbjct: 184 KLLVEMQKELGITIIIATHD----IDIVPLYCDNVFVMKEGRVILQGNPKE 230
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALK 166
+ L+ I + GE + ++GP+GSGKTTLL+ + G L GNI N ++
Sbjct: 18 RFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPY-SGNIFINGMEVRKIRNYI 74
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
R + + +TV + + + L G ++R +LK L L R
Sbjct: 75 RYSTNLPEA--YEIGVTVNDIVYL--YEELKG-LDRD----LFLEMLKALKLGEEILRR- 124
Query: 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+ +S G+ + P ++ LDEP +D+ + + + +++ G+
Sbjct: 125 ---KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEG 178
Query: 287 ITTIH 291
I H
Sbjct: 179 ILVTH 183
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-24
Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 104 LDKDYK---HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--D 158
++K Y ++G++ I GE++ L+GPSGSGKTT+L+++ G KG++
Sbjct: 20 VEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKR 78
Query: 159 IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
+ P KR +G V Q+ L +TV + + F LR + + + ARV+ +L+ + L
Sbjct: 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG--LREKR-VPKDEMDARVRELLRFMRL 135
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
E F +SGG+++R ++ + P +LL DEP + +D
Sbjct: 136 E-----SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 2e-23
Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 52/212 (24%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---Y 161
D IL I SI GE++ ++G SGSGK+TL K++ R G + +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALA 76
Query: 162 NPA-LKRRIGFVTQDDVLL------------PQLTVEETLVFAA-------F-LRLPGNM 200
+P L+R++G V QD+VLL P ++VE+ +++AA F L
Sbjct: 77 DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFISELR--- 132
Query: 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260
+ Y +T VG +SGG+R+R +I ++ +P +L+ DE
Sbjct: 133 ---EGY----------------NTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEA 172
Query: 261 TSGLDSTSANKLIQV-LQKVAKAGRTVITTIH 291
TS LD S +I + K+ K GRTVI H
Sbjct: 173 TSALDYES-EHVIMRNMHKICK-GRTVIIIAH 202
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 5e-23
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 29/179 (16%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQDDVLL 179
+ L+GP+G+GK+ L+++ G + D +G + N DI P +R IGFV QD L
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALF 82
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGER 239
P L+V + + LR N+ R ++ RV+ + ++LG+ + +SGGER
Sbjct: 83 PHLSVYRNIAYG--LR---NVERVERDRRVREMAEKLGIA-----HLLDRKPARLSGGER 132
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-------IQVLQKVAKAGRTVITTIH 291
+R ++ +++ P LLLLDEP S +D K ++ +Q+ + +H
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDL----KTKGVLMEELRFVQR-----EFDVPILH 182
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA- 164
+ IL+ I+ P I+A GPSG GK+T+ ++ R G IT + P +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARVQMILKEL--G 217
+ +IGFV+QD ++ T+ E L + L G+ + A + ++ +
Sbjct: 74 WRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-L 276
L T VG +K ISGG+R+R +I L +P +L+LDE T+ LDS S ++Q L
Sbjct: 129 LN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKAL 182
Query: 277 QKVAKAGRTVITTIH 291
+ K GRT + H
Sbjct: 183 DSLMK-GRTTLVIAH 196
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 3e-22
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 31/198 (15%)
Query: 104 LDKDY-KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIP 160
L + + L ++ + GE ++GP+G+GKT L+++ G D G I + D+
Sbjct: 7 LSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVT 65
Query: 161 YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
K I FV Q+ L P + V++ L F +R M + + RV ++L +E
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG--MR----MKKIKDPKRVLDTARDLKIEH 119
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-------I 273
R +SGGE++R ++ ++ +P +LLLDEP S LD + +
Sbjct: 120 LLD-R----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP----RTQENAREML 170
Query: 274 QVLQKVAKAGRTVITTIH 291
VL K + +T +H
Sbjct: 171 SVLHK-----KNKLTVLH 183
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-22
Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 19/171 (11%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI 159
L K + +L I+ S+ PGEIL ++G SG GKTTLL+ + G D G I+ + I
Sbjct: 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTI 68
Query: 160 PYN----PALKRRIGFVTQDDVLLPQLTVEETLVFAAF-LRLPGNMNRQQKYARVQMILK 214
P +RR+G++ Q+ VL P LTV + A+ L Q+ R++ +L+
Sbjct: 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNI---AYGLGNGK-GRTAQERQRIEAMLE 124
Query: 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
G+ + G + +SGG+++R ++ + DP L+LLDEP S LD
Sbjct: 125 LTGIS-----ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 6e-22
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 41/200 (20%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALK 166
LK I I G AL+G +GSGK+T+ K++ R D +G+I N +++
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYD-AEGDIKIGGKNVNKYNRNSIR 92
Query: 167 RRIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
IG V QD +L T EE V A K A++ ++
Sbjct: 93 SIIGIVPQDTILFNETIKYNILYGKLDATDEE--VIKA-----------TKSAQLYDFIE 139
Query: 215 EL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
L + T VG +K +SGGER+R +I +L DP +++ DE TS LDS + L
Sbjct: 140 ALPKKWD----TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYL 193
Query: 273 IQV-LQKVAKAGRTVITTIH 291
Q ++ + K RT+I H
Sbjct: 194 FQKAVEDLRK-NRTLIIIAH 212
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 27/195 (13%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA-LK 166
+L+G+T ++ PG++ AL+GP+GSGK+T+ ++ L G + + P Y+ L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL-QNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM------ILKELGLER 220
++ V Q+ +L + E + + L ++ A I +
Sbjct: 93 TQVAAVGQEPLLF-GRSFRENIAYG----LTRTPTMEEITAVAMESGAHDFISG---FPQ 144
Query: 221 CRHTRVGGGFIKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQ 277
T VG G SGG+R+ ++ ++ P LL+LD TS LD+ + +Q L
Sbjct: 145 GYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN-QLRVQRLLY 200
Query: 278 KVAK-AGRTVITTIH 291
+ + A RTV+
Sbjct: 201 ESPEWASRTVLLITQ 215
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 6e-21
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 28/189 (14%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPA--- 164
H +KGI + G+I+ L+G +G+GKTT L + G L KG I +N DI PA
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVI 78
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV-QM--ILKELGLERC 221
+ I V + + P+LTV E L+ A+ R ++ + + LKE
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKE------ 131
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ----VLQ 277
R ++GG +SGGE++ +IG ++ P LL++DEP+ GL A L+ V+Q
Sbjct: 132 RLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL----APILVSEVFEVIQ 183
Query: 278 KVAKAGRTV 286
K+ + G T+
Sbjct: 184 KINQEGTTI 192
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 38/199 (19%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALK 166
L+ ++ ++ PG+ LAL+GPSG+GK+T+L+++ R D G I + + +L+
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 167 RRIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
IG V QD VL +E V AA + A + +
Sbjct: 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAGNDE--VEAA-----------AQAAGIHDAIM 174
Query: 215 EL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
G T+VG +K +SGGE++R +I IL P ++LLDE TS LD+++ +
Sbjct: 175 AFPEGYR----TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 273 IQVLQKVAKAGRTVITTIH 291
L KV RT I H
Sbjct: 230 QASLAKVCA-NRTTIVVAH 247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 6e-20
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 34/198 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA-LK 166
+L+G++ + G+ LAL+G SG GK+T+++++ R D + G++ + N L+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE----------- 215
++G V+Q+ +L ++ E + + G+ +R Y + KE
Sbjct: 1107 AQLGIVSQEPILF-DCSIAENIAY-------GDNSRVVSYEEIVRAAKEANIHQFIDSLP 1158
Query: 216 LGLERCRHTRVGGGFIKG--ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
TRVG KG +SGG+++R +I ++ P +LLLDE TS LD+ S +
Sbjct: 1159 DKYN----TRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211
Query: 274 QVLQKVAKAGRTVITTIH 291
+ L K + GRT I H
Sbjct: 1212 EALDKARE-GRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 3e-18
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 52/209 (24%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPA-LK 166
ILKG+ + G+ +AL+G SG GK+T ++++ RL D + G ++ + N L+
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 167 RRIGFVTQDDVL------------LPQLTVEETLVFAA--------F-LRLPGNMNRQQK 205
IG V+Q+ VL +T++E + A F ++LP +
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDE--IEKAVKEANAYDFIMKLP------HQ 515
Query: 206 YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ T VG + +SGG+++R +I ++ +P +LLLDE TS LD
Sbjct: 516 F----------------DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 266 STSANKLIQVLQKVAKAGRTVITTIHQPS 294
+ S + L K + GRT I H+ S
Sbjct: 559 TESEAVVQAALDKARE-GRTTIVIAHRLS 586
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 104 LDKDYK--HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K + +LKGI I GE++ ++GPSGSGK+T L+ + L D +G I + I
Sbjct: 30 LKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINL 88
Query: 162 NP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
++ +G V Q L P +TV + A R++ A+ +L +
Sbjct: 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA--PMKVRKWPREKAEAKAMELLDK 146
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
+GL+ H +SGG+ +R +I + ++P ++L DEPTS LD +++ V
Sbjct: 147 VGLKDKAHAYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 276 LQKVAKAGRTVITTIH 291
++++A G T++ H
Sbjct: 202 MKQLANEGMTMVVVTH 217
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-19
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 25/189 (13%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALK 166
L+ I I G+ +AL+G SGSGK+T+ ++ R D +G+I + +L+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLI-TRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARVQMILKEL--GLE 219
++ V+Q+ L TV + +A +R+Q + A + ++ GL
Sbjct: 417 NQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGL- 470
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQK 278
T +G + +SGG+R+R +I +L D +L+LDE TS LD+ S + IQ L +
Sbjct: 471 ---DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDE 525
Query: 279 VAKAGRTVI 287
+ K RT +
Sbjct: 526 LQK-NRTSL 533
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-19
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 41/203 (20%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-- 162
K L ++ SI G+ +AL+G SGSGK+T+ + R D G+I +
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF-TRFYDVDSGSICLDGHDVRDY 410
Query: 163 --PALKRRIGFVTQDDVL-------------LPQLTVEETLVFAAFLRLPGNMNRQQKYA 207
L+R V+Q+ L + T E+ + AA + A
Sbjct: 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ-IEQAA------------RQA 457
Query: 208 RVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
++ + GL T +G +SGG+R+R +I +L D +L+LDE TS LD
Sbjct: 458 HAMEFIENMPQGL----DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 266 STSANKLIQV-LQKVAKAGRTVI 287
+ S + IQ L ++ K +TV+
Sbjct: 513 TES-ERAIQAALDELQK-NKTVL 533
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 6e-19
Identities = 115/693 (16%), Positives = 214/693 (30%), Gaps = 211/693 (30%)
Query: 34 HSIEF-MSQAYLRNRYSEIDIV-DESSSIEKDRPLPIFLKFEDVEYKVRINKAASDSNPV 91
H ++F + + + DI+ + + +DV+ D
Sbjct: 5 HHMDFETGEHQYQYK----DILSVFEDAFVDN------FDCKDVQ----------DM--P 42
Query: 92 KSVVSKVASQLSLDKDYKHILK---GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148
KS++SK ++ HI+ ++G++ L + + K V L
Sbjct: 43 KSILSK--------EEIDHIIMSKDAVSGTLRLFWTLLS-----KQEEMVQKFVEEVLRI 89
Query: 149 D---VKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEETLVFAAFLRLPGNMNRQ 203
+ + I P++ R+ ++ Q D L Q VFA N++R
Sbjct: 90 NYKFLMSPIKTEQR--QPSMMTRM-YIEQRDRLYNDNQ-------VFA-----KYNVSRL 134
Query: 204 QKYARVQMILKEL--------------G-----LERCRHTRVGGGFIKGI---SGGERKR 241
Q Y +++ L EL G L+ C +V I +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 242 TSIGYEILVDPSLLLLDEPTSGLDSTSANKL-IQVLQKVAKAGRTVITTIHQPS------ 294
E+L + TS D +S KL I +Q + R + + ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLN 252
Query: 295 ---SRMFHMFD---KLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATG 348
++ ++ F+ K+LL + R +FL T
Sbjct: 253 VQNAKAWNAFNLSCKILLTT----------RFK---------------QVTDFLSAATTT 287
Query: 349 QVTDISVPEALSASQGASDSEVLKYLQLKYKTQLEPKEKEEHHRNKKIPEHLQLAIQVKK 408
++ L+ + S +LKYL + Q P+E + P L + + +
Sbjct: 288 HISLDHHSMTLTPDE--VKSLLLKYLDCR--PQDLPREVLTTN-----PRRLSIIAESIR 338
Query: 409 DWTLSW--WDQFHIISRRTFRER---------WRDYFDKLRLVQALGVAV---VLGLLWW 454
D +W W + T E +R FD+L + + +L L+W+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWF 397
Query: 455 KSQSTTEAQLRDQVGLIFYICIF-WTSSSIFGAVYVFPFEKIYLVKERKA---------- 503
+ + ++ L Y + S + IYL + K
Sbjct: 398 DVIKSDVMVVVNK--LHKYSLVEKQPKESTIS-IP-----SIYLELKVKLENEYALHRSI 449
Query: 504 -DMYRLSVYYVCSTLC----DMVAHVFYPTIFMVIVYFMAGFKRT-----VPCFFLTLFA 553
D Y + + L D Y + I + + + FL F
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQ-----Y--FYSHIGHHLKNIEHPERMTLFRMVFLD-FR 501
Query: 554 ILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHI----PKFMQWLK- 608
L I + +G I + + L +Y +I PK+ + +
Sbjct: 502 FLEQKIRHDS---------TAWNASGSILNTLQQL-----KFYKPYICDNDPKYERLVNA 547
Query: 609 YLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLS 641
L FL P+ NL S D + ++
Sbjct: 548 ILDFL---------PKIEENLICSKYTDLLRIA 571
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 8e-19
Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 36/233 (15%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160
+ SL K +L + + GP+G GK+TL++ + V G T +
Sbjct: 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG---QVDGFPTQEEC- 495
Query: 161 YNPALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
R +V D D +V + + + ++ L E G
Sbjct: 496 -------RTVYVEHDIDGTHSDTSVLDFVFESG----------VGTKEAIKDKLIEFGFT 538
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
I +SGG + + ++ +L + +LLLDEPT+ LD+ + L+ L
Sbjct: 539 DEMIAMP----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-- 592
Query: 280 AKAGRTVITTIH------QPSSRMFHMFD-KLLLISEGYPVYYGKARESMEYF 325
G T IT H + + KL + + K + Y
Sbjct: 593 -TCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYE 644
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 6e-10
Identities = 42/244 (17%), Positives = 87/244 (35%), Gaps = 27/244 (11%)
Query: 87 DSNPVKSVVSKVASQLSLDKDYKHILKGI-TGSICPGEILALMGPSGSGKTTLLKIVGGR 145
+S+ K+ + + +D + + + + E + + + I R
Sbjct: 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809
Query: 146 LTDD---------VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL 196
+ + NI + P + ++ + + L + + L
Sbjct: 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGE--LVESHSKMVAEVDMKEAL 867
Query: 197 PGNMNRQQKYARVQMILKELGL--ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254
R ++ LGL E H+R I+G+SGG++ + + P L
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF--HMFDKLLLISEGYP 312
++LDEPT+ LD S L + L++ VI H S F ++ +++ + +G
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALKEFEG---GVIIITH---SAEFTKNLTEEVWAVKDGRM 976
Query: 313 VYYG 316
G
Sbjct: 977 TPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 10/142 (7%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K + I +A++GP+G+GK+TL+ ++ G L G + ++ R
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT-SGEVYTHE-------NCR 737
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228
I ++ Q + +++T R +R+ + I + + ++ G
Sbjct: 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEG 797
Query: 229 GF--IKGISGGERKRTSIGYEI 248
I GI + + + YE
Sbjct: 798 TPRRIAGIHSRRKFKNTYEYEC 819
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 39/212 (18%)
Query: 100 SQLSLDKDYK-------HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152
++ + K L + +I GE ++GPSG+GKTT ++I+ G L G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTG 60
Query: 153 NI-------TYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK 205
+ N P R+IG V Q L P LT E + F L M++++
Sbjct: 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEI 117
Query: 206 YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
RV+ + K L + + + +SG +++R ++ ++ DPSLLLLDEP S LD
Sbjct: 118 RKRVEEVAKILDIHHVLNHF-----PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 266 STSANKL-------IQVLQKVAKAGRTVITTI 290
+ ++ ++ +Q R +T +
Sbjct: 173 A----RMRDSARALVKEVQS-----RLGVTLL 195
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 23/192 (11%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKR-R 168
L G++ S+ G++ ++GP+GSGK+TL+ ++ G L D +G + + DI +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYH 81
Query: 169 IGFV-T-QDDVLLPQLTVEE-----------TLVFAAFLRLPGNMNRQQKYARVQMILKE 215
G V T Q L ++TV E + + + F + + + IL+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-EKAFKILEF 140
Query: 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L L + G +SGG+ K IG ++ +P ++++DEP +G+ A+ +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 276 LQKVAKAGRTVI 287
+ ++ G T +
Sbjct: 196 VLELKAKGITFL 207
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLL-------KIVGGRLT---------DDVKGN 153
+LKG++ G++++++G SGSGK+T L K G + D G
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 154 ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP---GNMNRQQKYARVQ 210
+ D L+ R+ V Q L +TV E ++ A P +++ R
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
L ++G++ R G + +SGG+++R SI + ++P +LL DEPTS LD
Sbjct: 135 KYLAKVGID----ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 271 KLIQVLQKVAKAGRTVITTIH 291
++++++Q++A+ G+T++ H
Sbjct: 191 EVLRIMQQLAEEGKTMVVVTH 211
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 5e-18
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 31/174 (17%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYN--DIPYNPAL 165
+ ILKG+ + GE+ ALMGP+G+GK+TL KI+ G V +G I + +I
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD 75
Query: 166 KR-RIG-FVT-QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI------LKEL 216
+R R G F+ Q V +P +T+ FLRL ++ + L+ L
Sbjct: 76 ERARKGLFLAFQYPVEVPGVTIAN------FLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 217 GLERCRHTR-VGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLD 265
+ +R + GF SGGE+KR EIL ++P+ +LDE SGLD
Sbjct: 130 DWDESYLSRYLNEGF----SGGEKKR----NEILQLLVLEPTYAVLDETDSGLD 175
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-18
Identities = 65/212 (30%), Positives = 94/212 (44%), Gaps = 52/212 (24%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-- 162
+ + ILK I SI GE +A +G SG GK+TL+ ++ R D G I +
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI-PRFYDVTSGQILIDGHNIKDF 408
Query: 163 --PALKRRIGFVTQDDVLL------------PQLTVEETLVFAA-------F-LRLPGNM 200
+L+ +IG V QD++L P T EE +V AA F + LP
Sbjct: 409 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE-VVEAAKMANAHDFIMNLP--- 464
Query: 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260
Q Y + E G+ +SGG+++R SI L +P +L+LDE
Sbjct: 465 ---QGY---DTEVGERGV--------------KLSGGQKQRLSIARIFLNNPPILILDEA 504
Query: 261 TSGLDSTSANKLIQV-LQKVAKAGRTVITTIH 291
TS LD S +IQ L ++K RT + H
Sbjct: 505 TSALDLES-ESIIQEALDVLSK-DRTTLIVAH 534
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 42/195 (21%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITYN--DIPYNPAL 165
K IL+G++ + PGE+ A+MGP+GSGK+TL + GR +V G + + D+
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 166 KR-RIG-FVT-QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK----------YARVQMI 212
R G F+ Q V +P ++ + FL+ N R + ++
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQF------FLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 213 LKELGLERCRHTR-VGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDST 267
+ L + TR V GF SGGE+KR +IL ++P L +LDE SGLD
Sbjct: 147 IALLKMPEDLLTRSVNVGF----SGGEKKR----NDILQMAVLEPELCILDESDSGLD-- 196
Query: 268 SANKLIQVLQKVAKA 282
I L+ VA
Sbjct: 197 -----IDALKVVADG 206
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 38/208 (18%)
Query: 100 SQLSLDKDYK-----HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
++ L+ K L I I GE +AL+GPSGSGK+TLL + G + G I
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKI 60
Query: 155 TY-----NDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
+ ++P P R +G V Q+ L P +TV + + F L L R++ +V
Sbjct: 61 YFDEKDVTELP--PK-DRNVGLVFQNWALYPHMTVYKNIAFP--LELRK-APREEIDKKV 114
Query: 210 QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
+ + K L +++ + +SGG+++R +I ++ +P +LLLDEP S LD+
Sbjct: 115 REVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA--- 166
Query: 270 NKL-------IQVLQKVAKAGRTVITTI 290
L ++ LQK ITT+
Sbjct: 167 -LLRLEVRAELKRLQK-----ELGITTV 188
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 100 SQLSLDKDYK-----HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
+ + K + G++ + GE +AL+GPSG GKTT L ++ G + G I
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEI 60
Query: 155 TY-----NDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
+ NDIP P R +G V Q+ L P +TV E + F LR +++ + RV
Sbjct: 61 YFDDVLVNDIP--PK-YREVGMVFQNYALYPHMTVFENIAFP--LRARR-ISKDEVEKRV 114
Query: 210 QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
I ++L ++ + +SGG+++R ++ ++ P +LL DEP S LD
Sbjct: 115 VEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 35/204 (17%)
Query: 100 SQLSLDKDYK-----HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
++ L+ K + + +I GE L L+GPSG GKTT L+++ G L + +G I
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRI 68
Query: 155 T-----YNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
+P P R I V Q + P +TV E + F L++ + + RV
Sbjct: 69 YFGDRDVTYLP--PK-DRNISMVFQSYAVWPHMTVYENIAFP--LKIKK-FPKDEIDKRV 122
Query: 210 QMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269
+ + L +E + +SGG+R+R ++ I+V+P +LL+DEP S LD+
Sbjct: 123 RWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--- 174
Query: 270 NKL-IQVLQKVAKAGRTVITTIHQ 292
KL + + R I + Q
Sbjct: 175 -KLRVAM--------RAEIKKLQQ 189
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 46/203 (22%), Positives = 92/203 (45%), Gaps = 23/203 (11%)
Query: 104 LDKDYK------HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN 157
+ K + L ++ + G+I ++G SG+GK+TL++ V L +G++ +
Sbjct: 30 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPTEGSVLVD 88
Query: 158 DIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ 210
+R+IG + Q LL TV + L L + + RV
Sbjct: 89 GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDN-TPKDEVKRRVT 145
Query: 211 MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+L +GL + + +SGG+++R +I + +P +LL D+ TS LD +
Sbjct: 146 ELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 271 KLIQVLQKV-AKAGRTVITTIHQ 292
++++L+ + + G T++ H+
Sbjct: 201 SILELLKDINRRLGLTILLITHE 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 8e-15
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 35/207 (16%)
Query: 100 SQLSLDKDYK-----HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
+ + L +K ++ ++ + GE + L+GPSG GKTT L+++ G L + +G I
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQI 60
Query: 155 T-----YNDIPYNPAL---KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY 206
D + R I V Q L P +TV + + F L+L + RQ+
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKLRK-VPRQEID 117
Query: 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
RV+ + + LGL + + + +SGG+R+R ++G I+ P + L+DEP S LD+
Sbjct: 118 QRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
Query: 267 TSANKL-IQVLQKVAKAGRTVITTIHQ 292
KL +++ R + + +
Sbjct: 173 ----KLRVRM--------RAELKKLQR 187
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 100 SQLSLDKDYK-----HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154
+ + L K + K I I GE + +GPSG GK+TLL+++ G L G++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSGDL 60
Query: 155 T-----YNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV 209
ND P PA +R +G V Q L P L+V E + F L+L G ++ RV
Sbjct: 61 FIGEKRMNDTP--PA-ERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRV 114
Query: 210 QMILKELGLERC--RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+ + L L R K +SGG+R+R +IG ++ +PS+ LLDEP S LD
Sbjct: 115 NQVAEVLQLAHLLDRKP-------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 61/300 (20%), Positives = 112/300 (37%), Gaps = 47/300 (15%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLL----KIV---GGRLTDDVKGNITYNDIPYNP 163
IL+ I+ SI PG+ + L+G +GSGK+TLL +++ G D V + + I
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGV--SW--DSITLEQ 91
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA---------RVQMILK 214
++ G + Q + F+ R N++ ++ V L+
Sbjct: 92 -WRKAFGVIPQKVFI-----------FSGTFRK--NLDPNAAHSDQEIWKVADEVG--LR 135
Query: 215 EL--GLERCRHTRV--GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+ + GG +S G ++ + +L +LLLDEP++ LD +
Sbjct: 136 SVIEQFPGKLDFVLVDGGC---VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-Y 191
Query: 271 KLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGF 330
++I+ K A A TVI + + + D+ L+I E Y E Y + F
Sbjct: 192 QIIRRTLKQAFADCTVILCEARIEAML--ECDQFLVIEENKVRQYDSILELYHYPADR-F 248
Query: 331 IPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQLEPKEKEEH 390
+ +P L + V L ++ ++ + + EH
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEH 308
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 56/207 (27%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PA 164
K +LK IT I PG+ +AL+GP+GSGKTT++ ++ R D +G I + I +
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL-MRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 165 LKRRIGFVTQDDVLL------------PQLTVEETLVFAA--------FLR-LPGNMNRQ 203
L+ IG V QD +L P T EE + A F++ LP
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE--IKEAAKLTHSDHFIKHLP------ 478
Query: 204 QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263
+ Y + +L + G + +S G+R+ +I L +P +L+LDE TS
Sbjct: 479 EGY---ETVLTDNG--------------EDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Query: 264 LDSTSANKLIQ-VLQKVAKAGRT--VI 287
+D T K IQ + K+ + G+T +I
Sbjct: 522 VD-TKTEKSIQAAMWKLME-GKTSIII 546
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 30/193 (15%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNP-A 164
+L G+ S+ PG ++A++G +GSGK+TL+ ++ RL D +G + +++
Sbjct: 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI-PRLIDPERGRVEVDELDVRTVKLKD 414
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN-------MNRQQKYARVQMILKEL- 216
L+ I V Q+ VL T++E L + G + K A++ + L
Sbjct: 415 LRGHISAVPQETVLFSG-TIKENLKW-------GREDATDDEIVEAAKIAQIHDFIISLP 466
Query: 217 -GLERCRHTRVG-GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
G + +RV GG + SGG+++R SI ++ P +L+LD+ TS +D + +++
Sbjct: 467 EGYD----SRVERGG--RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 275 VLQKVAKAGRTVI 287
L++ K G T
Sbjct: 521 GLKRYTK-GCTTF 532
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-10
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 175 DDVLLPQLTVEETL-VFAAFLRLPGNMNRQQK-YARVQMILKELGLERCRHTRVGGGFIK 232
+ L E +FA F + + +V++ + G ER
Sbjct: 8 EAAL--SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF-------- 57
Query: 233 GISGGERKRTSIGYEI------LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+SGGER + + + + SLL+LDEPT LD KLI ++++ K V
Sbjct: 58 -LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 287 ITTIH 291
I H
Sbjct: 117 ILVSH 121
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 50/242 (20%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA 164
++ +LK I I G++LA+ G +G+GKT+LL ++ G L +G I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIK--------- 66
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-- 222
RI F +Q ++P T++E ++F G + +Y V ++ C+
Sbjct: 67 HSGRISFCSQFSWIMPG-TIKENIIF-------GVSYDEYRYRSV--------IKACQLE 110
Query: 223 ----------HTRVGGGFIKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
+ +G GI SGG+R R S+ + D L LLD P LD +
Sbjct: 111 EDISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 271 KLI-QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY---FS 326
++ + K+ +T I + DK+L++ EG +YG E FS
Sbjct: 168 EIFESCVCKLMA-NKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
Query: 327 SL 328
S
Sbjct: 225 SK 226
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 52/277 (18%)
Query: 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLS-LDKDYKHILKGITGSICPGEILALMG 129
F + + KA ++N K+ + S +LK I I G++LA+ G
Sbjct: 12 AFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAG 71
Query: 130 PSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189
+G+GKT+LL ++ G L + +G I RI F +Q+ ++P T++E ++
Sbjct: 72 STGAGKTSLLMMIMGEL-EPSEGKIK---------HSGRISFCSQNSWIMPG-TIKENII 120
Query: 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCR------------HTRVGGGFIKGI--S 235
++ + +Y V ++ C+ + +G GI S
Sbjct: 121 GVSY--------DEYRYRSV--------IKACQLEEDISKFAEKDNIVLGE---GGITLS 161
Query: 236 GGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI-QVLQKVAKAGRTVITTIHQPS 294
GG+R R S+ + D L LLD P LD + ++ + K+ +T I +
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTSKME 220
Query: 295 SRMFHMFDKLLLISEGYPVYYGKARESMEY---FSSL 328
DK+L++ EG +YG E FSS
Sbjct: 221 --HLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 50/243 (20%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA 164
+ L GIT SI G ++A++G G GK++LL + + D V+G++
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVA--------- 63
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-- 222
+K + +V Q + ++ E ++F G + Y V ++ C
Sbjct: 64 IKGSVAYVPQQAWIQND-SLRENILF-------GCQLEEPYYRSV--------IQACALL 107
Query: 223 ----------HTRVGGGFIKGI--SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270
T +G KG+ SGG+++R S+ + + + L D+P S +D+
Sbjct: 108 PDLEILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 271 KLIQ--VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY---F 325
+ + + K +T I H S D ++++S G G +E + F
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMS--YLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222
Query: 326 SSL 328
+
Sbjct: 223 AEF 225
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 235 SGGERKRT------SIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT 288
SGGER ++ + + SLL+LDEPT LD KLI ++++ K VI
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 289 TIHQPSSRMFHMFDKLLLI 307
H + D ++ I
Sbjct: 310 VSHDEE--LKDAADHVIRI 326
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 42/127 (33%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-G- 233
DVL LTV+E F F R L+E+GL G+++ G
Sbjct: 688 DVL--ALTVDEAHDF--FADES-------AIFRALDTLREVGL----------GYLRLGQ 726
Query: 234 ----ISGGE--R-------KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+SGGE R +R+ G ++ +LDEPT+GL +L + L K+
Sbjct: 727 PATELSGGEAQRIKLATELRRSGRG------GTVYVLDEPTTGLHPADVERLQRQLVKLV 780
Query: 281 KAGRTVI 287
AG TVI
Sbjct: 781 DAGNTVI 787
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 2e-04
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 32/122 (26%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-G- 233
D+L +TV+E L F F +P ++ L+ L VG G++K G
Sbjct: 763 DIL--DMTVDEALEF--FKNIP----------SIKRTLQVL-------HDVGLGYVKLGQ 801
Query: 234 ----ISGGERKRTSIGYEILVDPS----LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+SGGE +R + E L L +LDEPT GL KL++VL ++ G T
Sbjct: 802 PATTLSGGEAQRIKLASE-LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNT 860
Query: 286 VI 287
VI
Sbjct: 861 VI 862
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 231 IKGISGGERKRTSIG-------YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
I +SGGE+ ++ I ++LDEPT LD KL ++ +KV
Sbjct: 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIP 337
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISE 309
+ +I T H + + D ++ + +
Sbjct: 338 QMIIIT-HHRE--LEDVADVIINVKK 360
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 32/122 (26%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-G- 233
+VL +TVE+ L F F +P +++ L+ L VG G++K G
Sbjct: 501 EVL--DMTVEDALDF--FASIP----------KIKRKLETL-------YDVGLGYMKLGQ 539
Query: 234 ----ISGGERKRTSIGYEILVDPS----LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+SGGE +R + E L S L +LDEPT+GL +L+ VL ++ G T
Sbjct: 540 PATTLSGGEAQRVKLAAE-LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDT 598
Query: 286 VI 287
V+
Sbjct: 599 VL 600
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 32/122 (26%)
Query: 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIK-G- 233
+VL +TVE+ L F F +P +++ L+ L VG G++K G
Sbjct: 803 EVL--DMTVEDALDF--FASIP----------KIKRKLETL-------YDVGLGYMKLGQ 841
Query: 234 ----ISGGERKRTSIGYEILVDPS----LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+SGGE +R + E L S L +LDEPT+GL +L+ VL ++ G T
Sbjct: 842 PATTLSGGEAQRVKLAAE-LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDT 900
Query: 286 VI 287
V+
Sbjct: 901 VL 902
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 674 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.85 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.85 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.83 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.83 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.82 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.81 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.81 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.77 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.77 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.74 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.73 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.71 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.71 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.7 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.7 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.68 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.68 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.67 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.66 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.65 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.61 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.57 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.57 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.56 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.55 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.53 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.52 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.52 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.52 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.51 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.49 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.48 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.46 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.44 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.44 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.43 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.42 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.41 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.4 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.36 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.35 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.34 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.33 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.33 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.32 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.32 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.32 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.29 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.26 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.25 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.15 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.14 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.13 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.12 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.1 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.09 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.05 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.97 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.96 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.92 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.92 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.86 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.86 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.84 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.84 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.84 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.82 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.81 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.8 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.61 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.54 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.52 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.52 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.5 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.49 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.49 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.47 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.33 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.3 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.23 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.21 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.18 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.18 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.18 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.17 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.17 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.17 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.15 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.14 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.1 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.07 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.04 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.04 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.94 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.94 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.93 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.91 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.9 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.89 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.87 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.85 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.82 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.77 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.76 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.74 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.7 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.64 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.53 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.52 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.5 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.49 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.49 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.45 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.39 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.38 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.37 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.36 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.3 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.29 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.26 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.24 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.2 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.19 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.19 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.19 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.14 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.13 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.12 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.1 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.09 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.05 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.03 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.02 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.01 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.94 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.87 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.83 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.82 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.81 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.8 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.79 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.78 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.74 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.71 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.62 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.6 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.59 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.58 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.58 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.53 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.48 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.45 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.42 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.4 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.4 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.37 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.37 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.31 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.3 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.3 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.27 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.25 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.24 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.22 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.21 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.09 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.08 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.03 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.02 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.98 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.98 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.97 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.96 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.92 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.86 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.81 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.8 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.79 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.75 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.75 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.72 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.71 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.7 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.7 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.67 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.66 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.65 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.61 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.57 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.56 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.54 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.52 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.5 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.49 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.45 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.44 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.43 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.38 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.37 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.36 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.36 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.33 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.29 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.21 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.19 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.14 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.1 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.04 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.02 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.0 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.99 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.99 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.99 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.97 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.96 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.95 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.9 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.88 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.87 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.86 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.86 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.86 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.85 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.81 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.8 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.79 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.79 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.78 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.76 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.75 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.74 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.74 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.74 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.71 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.71 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.71 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.71 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.7 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.69 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.69 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.69 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.68 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.66 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.65 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.61 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.6 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.59 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.57 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.57 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.56 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.56 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.55 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.54 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.51 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.5 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.49 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.47 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.47 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.44 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.43 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.4 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.4 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.4 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.37 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.36 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.35 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.32 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.3 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.28 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.28 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.26 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.24 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.23 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.19 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.18 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.17 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.16 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.16 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.14 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.08 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.06 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.05 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.05 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.04 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.04 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.04 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.03 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.01 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.0 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.97 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.96 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.95 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 93.94 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.94 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.91 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.9 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 93.89 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.87 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.86 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.82 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.82 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.8 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.8 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.79 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.78 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.77 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.76 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.75 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.74 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.72 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.72 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.66 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.66 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.65 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.65 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.64 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.64 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.63 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.62 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.61 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.61 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.61 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.6 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.6 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.58 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.57 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.55 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.55 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.54 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.54 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.5 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.49 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.49 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.39 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.39 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.39 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.37 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.37 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.34 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.32 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.31 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.31 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 93.28 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.26 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.23 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.23 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.18 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.18 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.16 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.13 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.12 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.1 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.09 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.08 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.07 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.03 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.03 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 93.01 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.0 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 92.95 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 92.95 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.92 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.9 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 92.87 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 92.86 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 92.8 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.77 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.76 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.64 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.62 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.6 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.58 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.49 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.49 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.47 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.46 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.41 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.35 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.19 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.08 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 91.92 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 91.92 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 91.71 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 91.51 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.35 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.28 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.28 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.23 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.18 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.02 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 90.97 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.97 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 90.94 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 90.89 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 90.8 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 90.68 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 90.09 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 90.54 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 90.48 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 90.45 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=432.07 Aligned_cols=222 Identities=23% Similarity=0.369 Sum_probs=198.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|..+ .+...+|+||||++++||+++|+||||||||||+|+|+|+.+
T Consensus 23 ~mi~v~~ls~~y~~~-----------------------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 23 HMIKLSNITKVFHQG-----------------------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CCEEEEEEEEEEECS-----------------------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEeEEEEeCCC-----------------------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 369999999998632 123569999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 148 DDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+++|+|.++|+++.. ..|+.||||+|++.+++.+||+||+.++.... ..++++..++++++|+.+||.+
T Consensus 80 -p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~ 155 (366)
T 3tui_C 80 -PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGD 155 (366)
T ss_dssp -CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGG
T ss_pred -CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCch
Confidence 569999999999852 24678999999999999999999999987654 3466777889999999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++++ .+|||||||||+|||||+.+|++|||||||||||+.++..+++.|++++++ |+|||++|||+. ++.+
T Consensus 156 ~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~ 229 (366)
T 3tui_C 156 KHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKR 229 (366)
T ss_dssp GTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHH
T ss_pred HhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHH
Confidence 877764 589999999999999999999999999999999999999999999999764 999999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||++|++|++++.|+++++.
T Consensus 230 ~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 230 ICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HCSEEEEEETTEEEECCBHHHHH
T ss_pred hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-50 Score=406.86 Aligned_cols=221 Identities=29% Similarity=0.485 Sum_probs=189.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. ...+++|+||||++++||+++|+||||||||||+|+|+|+++ +
T Consensus 2 l~~~~l~~~y~~~-----------------------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p 57 (235)
T 3tif_A 2 VKLKNVTKTYKMG-----------------------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-P 57 (235)
T ss_dssp EEEEEEEEEEEET-----------------------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C
T ss_pred EEEEEEEEEeCCC-----------------------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C
Confidence 7899999988631 112469999999999999999999999999999999999884 5
Q ss_pred CccEEEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP----A---L-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
.+|+|.++|+++.. . . ++.+|||+|++.+++.+||+||+.++...+......+++..+++.++++.+||.+.
T Consensus 58 ~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 69999999998752 1 1 34699999999999999999999998754422234566777889999999999875
Q ss_pred c-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 222 R-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 222 ~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
. ++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. +.+
T Consensus 138 ~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~ 210 (235)
T 3tif_A 138 FANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VAR 210 (235)
T ss_dssp GTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHT
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHH
Confidence 3 6554 589999999999999999999999999999999999999999999999765 999999999985 358
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q 044602 300 MFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+||+|++|++|+++..++++++
T Consensus 211 ~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 211 FGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TSSEEEEEETTEEEEEEECC--
T ss_pred hCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999988765
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=413.63 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. .+.+|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 7 ~l~i~~ls~~y~~--------------------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~- 59 (275)
T 3gfo_A 7 ILKVEELNYNYSD--------------------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK- 59 (275)
T ss_dssp EEEEEEEEEECTT--------------------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred EEEEEEEEEEECC--------------------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-
Confidence 5899999997741 2359999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC--h----hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYN--P----ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|+++. . .+++.+|||+|++ ..+..+||+||+.|+.... ..++++..++++++++.+||.+.
T Consensus 60 p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~ 136 (275)
T 3gfo_A 60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHL 136 (275)
T ss_dssp CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchh
Confidence 56999999999983 2 3567899999996 2344689999999987543 34566777889999999999988
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~ 300 (674)
.++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++.. +.++
T Consensus 137 ~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~ 210 (275)
T 3gfo_A 137 KDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLY 210 (275)
T ss_dssp TTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGG
T ss_pred hcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHh
Confidence 887654 899999999999999999999999999999999999999999999997 569999999999874 6789
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||++|++|++++.|+++++.+
T Consensus 211 ~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 211 CDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp CSEEEEEETTEEEEEECHHHHTH
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999998753
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=408.58 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 24 ~l~i~~l~~~y~---------------------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~- 75 (263)
T 2olj_A 24 MIDVHQLKKSFG---------------------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED- 75 (263)
T ss_dssp SEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-
Confidence 599999999873 2459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC--h----hccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYN--P----ALKRRIGFVTQDDVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|+++. . .+++.+|||+|++.+++.+||+||+.++. ... ...+++..++++++++.+||.+.
T Consensus 76 p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~ 152 (263)
T 2olj_A 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDK 152 (263)
T ss_dssp CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchH
Confidence 56999999999873 1 34667999999999999999999999964 322 23445556788999999999888
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++|
T Consensus 153 ~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~ 226 (263)
T 2olj_A 153 AHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVG 226 (263)
T ss_dssp TTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHC
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhC
Confidence 77765 489999999999999999999999999999999999999999999999878999999999975 477899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 227 d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 227 DRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=426.65 Aligned_cols=218 Identities=29% Similarity=0.470 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~yg---------------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~- 54 (381)
T 3rlf_A 3 SVQLQNVTKAWG---------------------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET- 54 (381)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-
Confidence 389999999873 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 55 p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p 131 (381)
T 3rlf_A 55 ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP 131 (381)
T ss_dssp CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG
T ss_pred CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 569999999999863 34578999999999999999999999997654 3567777889999999999998887765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||||+
T Consensus 132 -----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~ 205 (381)
T 3rlf_A 132 -----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIV 205 (381)
T ss_dssp -----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEE
T ss_pred -----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999765 999999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|+++..|+++++.+
T Consensus 206 vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 206 VLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEeCHHHHHh
Confidence 999999999999999853
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=409.13 Aligned_cols=217 Identities=25% Similarity=0.416 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~i~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~- 57 (262)
T 1b0u_A 6 KLHVIDLHKRYG---------------------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK- 57 (262)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEeeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 489999999773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC-----------------hhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYN-----------------PALKRRIGFVTQDDVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQ 210 (674)
Q Consensus 149 ~~~G~I~~~g~~~~-----------------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~ 210 (674)
+.+|+|.++|+++. ...++.+|||+|++.+++.+||+||+.++. ... ...+++..++++
T Consensus 58 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ 134 (262)
T 1b0u_A 58 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERAL 134 (262)
T ss_dssp CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHH
T ss_pred CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHH
Confidence 56999999999875 124567999999999999999999999964 322 234455567889
Q ss_pred HHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 044602 211 MILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITT 289 (674)
Q Consensus 211 ~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 289 (674)
++++.+||.+. .++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++
T Consensus 135 ~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 135 KYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp HHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999887 77765 4899999999999999999999999999999999999999999999998789999999
Q ss_pred ecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 290 IHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 290 ~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++. ++.++||++++|++|++++.|+++++.
T Consensus 210 tHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 210 THEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp CSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99975 477899999999999999999998874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=424.97 Aligned_cols=217 Identities=25% Similarity=0.425 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+.+
T Consensus 4 ~l~i~~ls~~y~---------------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~- 55 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---------------------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ- 55 (359)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-
Confidence 489999999773 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeC----Ch--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 149 DVKGNITYNDIPY----NP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~----~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
+++|+|.++|+++ .. ..++.+|||+|++.+||++||+||+.|+...+ ...+++.+++++++++.+||.+..
T Consensus 56 p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~ 132 (359)
T 3fvq_A 56 PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELA 132 (359)
T ss_dssp CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGT
T ss_pred CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHh
Confidence 5699999999987 21 34678999999999999999999999986443 234556678899999999999888
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~ 301 (674)
++++ .+|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|+|+|++|||.. ++..+|
T Consensus 133 ~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~a 206 (359)
T 3fvq_A 133 GRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYA 206 (359)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHC
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHC
Confidence 8765 4899999999999999999999999999999999999999999888765 46999999999975 578999
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||++|++|+++..|+++++.
T Consensus 207 Dri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 207 DRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=403.49 Aligned_cols=218 Identities=28% Similarity=0.396 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 15 ~l~i~~l~~~y~---------------------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~- 66 (256)
T 1vpl_A 15 AVVVKDLRKRIG---------------------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK- 66 (256)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEEC---------------------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 489999999773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+.+..... ....++..++++++++.+||.+..+++
T Consensus 67 p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 143 (256)
T 1vpl_A 67 PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143 (256)
T ss_dssp CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB
T ss_pred CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC
Confidence 569999999998753 35678999999999999999999999976432 123444556789999999999888876
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++..+||+++
T Consensus 144 ~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~ 217 (256)
T 1vpl_A 144 V-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIA 217 (256)
T ss_dssp G-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEE
Confidence 5 489999999999999999999999999999999999999999999999878999999999975 4677899999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 218 ~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 218 LIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEETTEEEEEEEHHHHHH
T ss_pred EEECCEEEEecCHHHHHH
Confidence 999999999999998754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=395.92 Aligned_cols=212 Identities=29% Similarity=0.469 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 4 ~l~~~~l~~~y~---------------------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~- 55 (224)
T 2pcj_A 4 ILRAENIKKVIR---------------------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA- 55 (224)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 489999999773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-------hcc-ccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP-------ALK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~-~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.++|+++.. .++ +.+|||+|++.+++.+||+||+.++.... ...+++..++++++++.+||.+
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~ 132 (224)
T 2pcj_A 56 PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGD 132 (224)
T ss_dssp CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTT
T ss_pred CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCch
Confidence 569999999998742 123 67999999999999999999999976543 2344555678899999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..++++ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+.. + +.
T Consensus 133 ~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~ 205 (224)
T 2pcj_A 133 KLSRKP-----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-EL 205 (224)
T ss_dssp CTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TT
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-Hh
Confidence 887765 4899999999999999999999999999999999999999999999998779999999999753 4 88
Q ss_pred cCEEEEEeCCEEEEecCh
Q 044602 301 FDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~ 318 (674)
||++++|++|++++.|+.
T Consensus 206 ~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 206 THRTLEMKDGKVVGEITR 223 (224)
T ss_dssp SSEEEEEETTEEEEEEEC
T ss_pred CCEEEEEECCEEEEEeee
Confidence 999999999999999863
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=418.74 Aligned_cols=219 Identities=26% Similarity=0.456 Sum_probs=195.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ +.+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 13 ~~l~~~~l~~~y~--------------------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 13 MTIEFVGVEKIYP--------------------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEEECCT--------------------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEEEEEEEc--------------------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999998652 22569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+++
T Consensus 67 -p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~ 142 (355)
T 1z47_A 67 -PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF 142 (355)
T ss_dssp -CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC
T ss_pred -CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC
Confidence 569999999999853 35678999999999999999999999987653 235566678899999999999888876
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|
T Consensus 143 ~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri 216 (355)
T 1z47_A 143 P-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRV 216 (355)
T ss_dssp G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEE
Confidence 5 489999999999999999999999999999999999999999999999765 999999999975 578899999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|+++..|+++++.
T Consensus 217 ~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 217 LVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=404.04 Aligned_cols=218 Identities=22% Similarity=0.376 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 7 ~l~i~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~- 58 (257)
T 1g6h_A 7 ILRTENIVKYFG---------------------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK- 58 (257)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred EEEEeeeEEEEC---------------------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999999873 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhh-cCCC---------CCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFL-RLPG---------NMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l 213 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+.++... .... ...+++..+++++++
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 59 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHH
Confidence 569999999998743 2356799999999999999999999987532 1110 012234456789999
Q ss_pred HHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 214 KELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 214 ~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.+||.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++
T Consensus 139 ~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 213 (257)
T 1g6h_A 139 EFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213 (257)
T ss_dssp HHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 99999988887654 8999999999999999999999999999999999999999999999987899999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
.. +.++||++++|++|++++.|++++
T Consensus 214 ~~-~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 214 DI-VLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ST-TGGGCSEEEEEETTEEEEEEESHH
T ss_pred HH-HHHhCCEEEEEECCEEEEEeCHHH
Confidence 64 678999999999999999999988
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=418.76 Aligned_cols=218 Identities=26% Similarity=0.451 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 54 (359)
T 2yyz_A 3 SIRVVNLKKYFG---------------------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK- 54 (359)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEEEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-
Confidence 378999998773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 131 (359)
T 2yyz_A 55 PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP 131 (359)
T ss_dssp CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG
T ss_pred CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh
Confidence 569999999999853 34678999999999999999999999986432 2344455678999999999998888765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||.. ++..+||+|+
T Consensus 132 -----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~ 205 (359)
T 2yyz_A 132 -----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIA 205 (359)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999764 999999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|+++..|+++++.+
T Consensus 206 vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 206 VFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEeCCHHHHHh
Confidence 999999999999998853
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=418.39 Aligned_cols=217 Identities=30% Similarity=0.460 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 54 (362)
T 2it1_A 3 EIKLENIVKKFG---------------------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK- 54 (362)
T ss_dssp CEEEEEEEEESS---------------------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-
Confidence 378999998662 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 131 (362)
T 2it1_A 55 PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP 131 (362)
T ss_dssp CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG
T ss_pred CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh
Confidence 569999999999853 34578999999999999999999999987553 2355666788999999999998888765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|+
T Consensus 132 -----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~ 205 (362)
T 2it1_A 132 -----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIA 205 (362)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999764 999999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 206 vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 206 VIREGEILQVGTPDEVY 222 (362)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999885
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=412.72 Aligned_cols=215 Identities=30% Similarity=0.482 Sum_probs=181.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+. .+.+|+||||++++||++||+||||||||||+|+|+|++
T Consensus 52 ~~i~~~~vs~~y~~--------------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~- 104 (306)
T 3nh6_A 52 GRIEFENVHFSYAD--------------------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY- 104 (306)
T ss_dssp CCEEEEEEEEESST--------------------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-
T ss_pred CeEEEEEEEEEcCC--------------------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-
Confidence 46999999998741 246999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||+++.. .+|+.||||+|++.+|+. ||+|||.++... ... ++++++++..++
T Consensus 105 ~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 105 DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp CCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHH
T ss_pred CCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHH
Confidence 4569999999999863 467899999999999975 999999987421 122 223334444333
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..++.+|+. ..+|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|++||+++.
T Consensus 175 ~lp~gl~t~~~~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~- 251 (306)
T 3nh6_A 175 AFPEGYRTQVGER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST- 251 (306)
T ss_dssp HSTTGGGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-
T ss_pred hccchhhhHhcCC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-
Confidence 44667777754 457999999999999999999999999999999999999999999999865 7999999999865
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+ ..||+|++|++|++++.|+++++++
T Consensus 252 ~-~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 252 V-VNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp H-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 4 4599999999999999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=417.48 Aligned_cols=217 Identities=29% Similarity=0.441 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 54 (372)
T 1g29_1 3 GVRLVDVWKVFG---------------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE- 54 (372)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-
Confidence 488999998773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+++|+|.++|+++.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||.+
T Consensus 55 p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~ 131 (372)
T 1g29_1 55 PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131 (372)
T ss_dssp CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGG
T ss_pred CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCch
Confidence 569999999988632 23578999999999999999999999987653 2355666788999999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++++ .+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..
T Consensus 132 ~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~ 205 (372)
T 1g29_1 132 LLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMT 205 (372)
T ss_dssp GTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHH
T ss_pred HhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHH
Confidence 888765 489999999999999999999999999999999999999999999999765 999999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||+|++|++|+++..|+++++.
T Consensus 206 ~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 206 MGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999885
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=403.51 Aligned_cols=216 Identities=24% Similarity=0.400 Sum_probs=190.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 10 ~~l~~~~l~~~~~---------------------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---------------------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred ceEEEEeEEEEeC---------------------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3589999999773 2569999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.... ...+..++++++++.+||.+..+
T Consensus 63 -p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~ 136 (266)
T 4g1u_C 63 -PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQ 136 (266)
T ss_dssp -CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTT
T ss_pred -CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhc
Confidence 569999999999853 35667999999998888899999999976432 12234567899999999998888
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchH
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILV------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSR 296 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~ 296 (674)
+.+ .+|||||||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. +
T Consensus 137 ~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~ 210 (266)
T 4g1u_C 137 RDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-L 210 (266)
T ss_dssp SBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-H
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-H
Confidence 765 4899999999999999999 99999999999999999999999999999765 579999999975 5
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||||++|++|++++.|+++++.
T Consensus 211 ~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 211 AALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 77899999999999999999999874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=396.95 Aligned_cols=216 Identities=26% Similarity=0.431 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 57 (240)
T 1ji0_A 6 VLEVQSLHVYYG---------------------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR- 57 (240)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEeEEEEEC---------------------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999999773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccc
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~ 222 (674)
+.+|+|.++|+++.. . .++.+|||+|++.+++.+||+||+.++.... ..+++..++++++++.++ |.+..
T Consensus 58 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~ 133 (240)
T 1ji0_A 58 AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERL 133 (240)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTT
T ss_pred CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHh
Confidence 569999999998753 1 2456999999999999999999999874211 122234567788999994 88777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||
T Consensus 134 ~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d 207 (240)
T 1ji0_A 134 KQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAH 207 (240)
T ss_dssp TSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCS
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 7654 489999999999999999999999999999999999999999999999878999999999975 4778999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 208 ~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 208 YGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp EEEEEETTEEEEEEEHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHh
Confidence 99999999999999998764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=417.39 Aligned_cols=217 Identities=28% Similarity=0.453 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhccccccccccc--ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++||+++|. .++ +|+|+||++++||+++|+||||||||||||+|+|+.
T Consensus 3 ~l~i~~l~~~y~---------------------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 3 RIIVKNVSKVFK---------------------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEEEEEEEG---------------------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEEeEEEEEC---------------------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 388999999773 245 999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 147 TDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+ +++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++..++++++++.+||.
T Consensus 56 ~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~ 131 (353)
T 1oxx_K 56 V-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIH 131 (353)
T ss_dssp C-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCG
T ss_pred C-CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCc
Confidence 4 569999999988632 34678999999999999999999999986443 245566678899999999999
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++++ .+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++.
T Consensus 132 ~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~ 205 (353)
T 1oxx_K 132 HVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIF 205 (353)
T ss_dssp GGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHH
T ss_pred hHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 8888765 489999999999999999999999999999999999999999999999764 999999999975 578
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+||+|++|++|+++..|+++++.
T Consensus 206 ~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 206 AIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999999999999999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=418.06 Aligned_cols=217 Identities=27% Similarity=0.421 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 11 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 62 (372)
T 1v43_A 11 EVKLENLTKRFG---------------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE- 62 (372)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred eEEEEEEEEEEC---------------------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-
Confidence 389999999773 2468999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 63 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 139 (372)
T 1v43_A 63 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP 139 (372)
T ss_dssp CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT
T ss_pred CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh
Confidence 569999999999853 34578999999999999999999999975432 2456666788999999999998887765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||.. ++..+||+|+
T Consensus 140 -----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~ 213 (372)
T 1v43_A 140 -----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIA 213 (372)
T ss_dssp -----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999765 999999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 214 vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 214 VMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999999885
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=392.50 Aligned_cols=199 Identities=27% Similarity=0.478 Sum_probs=176.6
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+|+|+|+++++ |+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 49999999999 9999999999999999999999884 569999999998753 3467899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...+ ......++++++++.+||.+..+++++ +|||||||||+|||||+.+|++|+|||||+|||+.+
T Consensus 92 ~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 92 AYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 9864321 122235678999999999988777654 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 269 ANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 269 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 162 ~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 162 KGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999764 999999999975 477899999999999999999998874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=411.66 Aligned_cols=199 Identities=27% Similarity=0.455 Sum_probs=179.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+|+|+||++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ..++.+|||+|++.+||++||+||+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999884 569999999999853 3467899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.|+...+. ..+. ++++++++.+||.+..++++ .+|||||||||+|||||+.+|++|||||||||||+.+
T Consensus 94 ~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 162 (348)
T 3d31_A 94 EFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162 (348)
T ss_dssp HHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred HHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 99875431 1112 67899999999998888765 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+..+.+.|+++.+ .|+|+|++|||+. ++..+||+|++|++|+++..|+++++.
T Consensus 163 ~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 163 QENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999976 4999999999975 578899999999999999999999874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=395.76 Aligned_cols=222 Identities=27% Similarity=0.409 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|..+. ...+++|+|+||++++||+++|+||||||||||+|+|+|++ +
T Consensus 2 ~l~~~~l~~~y~~~~----------------------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~ 58 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT----------------------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-E 58 (266)
T ss_dssp CEEEEEEEEEESTTS----------------------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-C
T ss_pred EEEEEEEEEEecCCC----------------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C
Confidence 478999999884100 00146999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccc
Q 044602 149 DVKGNITYNDIPYNP-ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--RCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~ 224 (674)
+.+|+|.++|+++.. .+++.+|||+|++ .+++.+||+||+.++.... .++++..++++++++.+||. +..++
T Consensus 59 p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~ 134 (266)
T 2yz2_A 59 PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDR 134 (266)
T ss_dssp CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTC
T ss_pred CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccC
Confidence 569999999998864 4567899999995 4666789999999875321 11122345788999999998 87777
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +..+||++
T Consensus 135 ~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v 208 (266)
T 2yz2_A 135 VP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRV 208 (266)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEE
T ss_pred Ch-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEE
Confidence 65 4899999999999999999999999999999999999999999999998779999999999864 66789999
Q ss_pred EEEeCCEEEEecChhHHHH
Q 044602 305 LLISEGYPVYYGKARESME 323 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~ 323 (674)
++|++|++++.|+++++.+
T Consensus 209 ~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 209 VVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEEETTEEEEEEEHHHHHH
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 9999999999999988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=391.68 Aligned_cols=219 Identities=25% Similarity=0.330 Sum_probs=180.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-C
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-T 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~ 147 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+. .
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 55 (250)
T 2d2e_A 3 QLEIRDLWASID---------------------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY 55 (250)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC
T ss_pred eEEEEeEEEEEC---------------------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 489999999773 246999999999999999999999999999999999972 2
Q ss_pred CCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-Ccc
Q 044602 148 DDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~ 221 (674)
++.+|+|.++|+++.. . .++.++||+|++.+++.+||+||+.++............+..++++++++.+|| .+.
T Consensus 56 ~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 135 (250)
T 2d2e_A 56 TVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY 135 (250)
T ss_dssp EEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH
Confidence 4569999999998753 1 244699999999999999999999987532111112334445678999999999 477
Q ss_pred ccccccCCccCc-cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKG-ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~-LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
.++.++ + |||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+.. +...
T Consensus 136 ~~~~~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~ 209 (250)
T 2d2e_A 136 LSRYLN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYI 209 (250)
T ss_dssp GGSBTT-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTS
T ss_pred hcCCcc-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHh
Confidence 777654 6 99999999999999999999999999999999999999999999997679999999999764 5566
Q ss_pred -cCEEEEEeCCEEEEecChhH
Q 044602 301 -FDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 301 -~D~v~~L~~G~iv~~G~~~~ 320 (674)
||++++|++|++++.|+++.
T Consensus 210 ~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 210 QPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEECCEEEEEeCHHH
Confidence 59999999999999999873
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=397.34 Aligned_cols=220 Identities=25% Similarity=0.390 Sum_probs=185.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 20 ~~l~~~~l~~~y~---------------------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---------------------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEeEEEEEC---------------------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4699999999873 2469999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCC--h----hccccEEEEccCCCC--CCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYN--P----ALKRRIGFVTQDDVL--LPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. . .+++.+|||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||
T Consensus 73 -p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 151 (279)
T 2ihy_A 73 -ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM 151 (279)
T ss_dssp -CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC
Confidence 56999999998875 2 356789999999753 3457999999886321100 001123445678999999999
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEecCCchH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV--ITTIHQPSSR 296 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~ 296 (674)
.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++|||+. +
T Consensus 152 ~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~ 225 (279)
T 2ihy_A 152 SAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-E 225 (279)
T ss_dssp GGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-G
T ss_pred hhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-H
Confidence 888887654 899999999999999999999999999999999999999999999997669999 99999976 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++||++++|++|++++.|+++++
T Consensus 226 ~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 226 ITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp CCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHH
Confidence 6789999999999999999998876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-47 Score=387.16 Aligned_cols=215 Identities=31% Similarity=0.479 Sum_probs=180.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+. +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~~~~~~~l~~~y~~-------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEEESST-------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CceeEEEEEEEeCC-------------------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999997631 12569999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. .+++.+|||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..+
T Consensus 61 -p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~ 129 (247)
T 2ff7_A 61 -PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFIS 129 (247)
T ss_dssp -CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHH
T ss_pred -CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHH
Confidence 569999999999753 35678999999999887 499999988521 112 234566777777765433
Q ss_pred -------ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 224 -------TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 224 -------~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+.++ +.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++..
T Consensus 130 ~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~- 206 (247)
T 2ff7_A 130 ELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST- 206 (247)
T ss_dssp TSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-
T ss_pred hCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-
Confidence 2232 3356899999999999999999999999999999999999999999999995 59999999999864
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+ ..||++++|++|++++.|+++++.
T Consensus 207 ~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 207 V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 3 469999999999999999998874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=386.57 Aligned_cols=229 Identities=25% Similarity=0.343 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-C
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-T 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~ 147 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+. .
T Consensus 20 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~ 72 (267)
T 2zu0_C 20 MLSIKDLHVSVE---------------------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY 72 (267)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC
T ss_pred eEEEEeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 599999999773 246999999999999999999999999999999999984 2
Q ss_pred CCCccEEEECCEeCCh----hc-cccEEEEccCCCCCCCCCHHHHHHHHHh-hc---CCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----AL-KRRIGFVTQDDVLLPQLTVEETLVFAAF-LR---LPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
++.+|+|.++|+++.. .. ++.++||+|++.+++.+||.||+.+... .+ .....++++..++++++++.+||
T Consensus 73 ~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 152 (267)
T 2zu0_C 73 EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152 (267)
T ss_dssp EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC
Confidence 4569999999998742 12 3469999999999999999999987542 11 11122344556788999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
. +..++.++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +
T Consensus 153 ~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~ 227 (267)
T 2zu0_C 153 PEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-L 227 (267)
T ss_dssp CTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-G
T ss_pred ChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-H
Confidence 6 45666542 1499999999999999999999999999999999999999999999987679999999999754 4
Q ss_pred Hhh-cCEEEEEeCCEEEEecChhHHHHHHHhCCC
Q 044602 298 FHM-FDKLLLISEGYPVYYGKARESMEYFSSLGF 330 (674)
Q Consensus 298 ~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 330 (674)
... ||++++|++|++++.|+++++.. .+..++
T Consensus 228 ~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 228 DYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp GTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred HhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 555 89999999999999999988753 344444
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-47 Score=392.47 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. +.+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 16 ~l~~~~l~~~y~~~------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~- 70 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH------------------------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ- 70 (271)
T ss_dssp CEEEEEEEECCTTC------------------------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeCCC------------------------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 59999999976310 12569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHc--CCCcc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKEL--GLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~ 221 (674)
+.+|+|.++|+++.. .+++.+|||+|++.+++. ||+||+.++...... ....+......++++++.+ ||.+.
T Consensus 71 p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 149 (271)
T 2ixe_A 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149 (271)
T ss_dssp CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB
T ss_pred CCCCEEEECCEEcccCCHHHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh
Confidence 569999999998743 356789999999998885 999999986421100 0000111223456778887 67665
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 300 (674)
.++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++.. + ..
T Consensus 150 ~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~ 222 (271)
T 2ixe_A 150 VGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ER 222 (271)
T ss_dssp CCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TT
T ss_pred hcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-Hh
Confidence 5554 358999999999999999999999999999999999999999999999865 48999999999753 4 45
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++++.+
T Consensus 223 ~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 223 AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=380.45 Aligned_cols=210 Identities=26% Similarity=0.410 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 4 ~l~i~~l~~~y~~--------------------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 56 (253)
T 2nq2_C 4 ALSVENLGFYYQA--------------------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR- 56 (253)
T ss_dssp EEEEEEEEEEETT--------------------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-
T ss_pred eEEEeeEEEEeCC--------------------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 4899999997730 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
+.+|+|. .++.+|||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.+
T Consensus 57 p~~G~I~---------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 126 (253)
T 2nq2_C 57 PIQGKIE---------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF- 126 (253)
T ss_dssp CSEEEEE---------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCCcEEE---------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-
Confidence 5699998 356799999999999899999999987532110 00112344567899999999998887765
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+.++||++++
T Consensus 127 ----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~ 201 (253)
T 2nq2_C 127 ----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLL 201 (253)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 489999999999999999999999999999999999999999999999877 999999999975 46789999999
Q ss_pred EeCCEEEEecChhHH
Q 044602 307 ISEGYPVYYGKARES 321 (674)
Q Consensus 307 L~~G~iv~~G~~~~~ 321 (674)
|++|+ ++.|+++++
T Consensus 202 l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 202 LNKQN-FKFGETRNI 215 (253)
T ss_dssp EETTE-EEEEEHHHH
T ss_pred EeCCe-EecCCHHHH
Confidence 99999 999998876
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=381.76 Aligned_cols=196 Identities=24% Similarity=0.376 Sum_probs=174.9
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
++|+|+||++++||+++|+||||||||||+|+|+|+++ +. |+|.++|+++.. .+++.+|||+|++.+++.+||+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 48999999999999999999999999999999999884 56 999999998742 3567899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC-------EEEEe
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS-------LLLLD 258 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~-------illLD 258 (674)
||+.++... . .. .++++++++.+||.+..++.+ .+|||||||||+|||||+.+|+ +||||
T Consensus 92 e~l~~~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQHD---K-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCSS---T-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhcc---C-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 999986211 1 11 456889999999988877765 4899999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999877999999999975 46789999999999999999998876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=384.90 Aligned_cols=202 Identities=29% Similarity=0.438 Sum_probs=172.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. .+++.+|||+|++.+++. ||
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv 92 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TI 92 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-cH
Confidence 569999999999999999999999999999999999874 569999999998753 356789999999998885 99
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG------GGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+||+.++... ... .++++++++.+++.+..++... ++.+.+|||||||||+|||||+.+|++|+||
T Consensus 93 ~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD 164 (243)
T 1mv5_A 93 RENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD 164 (243)
T ss_dssp HHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999875211 112 2356788888998776554321 2345689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|||+|||+.++..+++.|++++ +|+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 165 EPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 165 EATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999997 69999999999753 4 5699999999999999999988753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=427.56 Aligned_cols=268 Identities=23% Similarity=0.419 Sum_probs=205.7
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hcc-----------ccccccccCCCccc---c---CCCCceeEEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR-----------YSEIDIVDESSSIE---K---DRPLPIFLKF 72 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~---~---~~~~~~~l~~ 72 (674)
+.+|++.+.+|..++|.++.+..+... ... ....++.+.+++.. . ....+..+++
T Consensus 265 l~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 265 LWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEE
Confidence 456778888999999988877654321 000 00012222211110 0 1122346999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+|
T Consensus 345 ~~v~~~y~~-------------------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G 398 (587)
T 3qf4_A 345 ENVEFRYFE-------------------------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERG 398 (587)
T ss_dssp EEEEECSSS-------------------------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEE
T ss_pred EEEEEEcCC-------------------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCc
Confidence 999997742 2356999999999999999999999999999999999987 45699
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCcccc
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR-----VQMILKELGLERCRH 223 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~ 223 (674)
+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. ..++++..+. +++.++ .+++..+
T Consensus 399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~ 470 (587)
T 3qf4_A 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII--SLPEGYD 470 (587)
T ss_dssp EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHH--TSSSGGG
T ss_pred EEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHH--hcccchh
Confidence 99999999853 467889999999999987 99999987632 1222221111 122232 3466788
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+|+. +.+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. ...|||
T Consensus 471 ~~~~~~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~ 546 (587)
T 3qf4_A 471 SRVERG-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADK 546 (587)
T ss_dssp CEECSS-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSE
T ss_pred hHhcCC-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCE
Confidence 888754 45799999999999999999999999999999999999999999999985 59999999999864 468999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++|+.+
T Consensus 547 i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 547 ILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=379.00 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=178.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++
T Consensus 17 ~l~i~~l~~~y~~~------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 71 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ------------------------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD- 71 (260)
T ss_dssp CEEEEEEEECCTTC------------------------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeCCC------------------------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-
Confidence 48999999977310 11469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC------
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL------ 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------ 218 (674)
+ +|+|.++|+++.. .+++.+|||+|++.+++ .||+||+.++.. ...+ +++.+.++.+++
T Consensus 72 ~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~ 140 (260)
T 2ghi_A 72 A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEA 140 (260)
T ss_dssp C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHT
T ss_pred C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHh
Confidence 5 8999999998742 35678999999999887 499999988521 1122 234556666654
Q ss_pred -CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 -ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 -~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++..++.++ +.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++.. +
T Consensus 141 l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~ 217 (260)
T 2ghi_A 141 LPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I 217 (260)
T ss_dssp STTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S
T ss_pred cccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H
Confidence 344455454 34568999999999999999999999999999999999999999999999965 8999999999864 3
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||++++|++|++++.|+++++.+
T Consensus 218 -~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 218 -SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp -TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HhCCEEEEEECCEEEEECCHHHHHh
Confidence 5699999999999999999998753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-46 Score=424.84 Aligned_cols=264 Identities=29% Similarity=0.400 Sum_probs=207.2
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc---cC---CCCceeE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE---KD---RPLPIFL 70 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~---~~---~~~~~~l 70 (674)
+.+|++.+.+|..++|.++.++.+... .++ ..++.+.+++.. .. ...+..+
T Consensus 263 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r--i~~~l~~~~~~~~~~~~~~~~~~~~~i 340 (578)
T 4a82_A 263 IGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR--VFQLIDEDYDIKNGVGAQPIEIKQGRI 340 (578)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH--HHHHHTCCCSSCCCTTCCCCCCCSCCE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCcccCCCCccccCCCCCeE
Confidence 456788888999999988887654321 000 012222221111 00 1223469
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+++||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|.+ ++.
T Consensus 341 ~~~~v~~~y~~-------------------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~ 394 (578)
T 4a82_A 341 DIDHVSFQYND-------------------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVT 394 (578)
T ss_dssp EEEEEEECSCS-------------------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCS
T ss_pred EEEEEEEEcCC-------------------------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCC
Confidence 99999997742 2356999999999999999999999999999999999987 456
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CC
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LE 219 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 219 (674)
+|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. ..++ +++.+.++..+ ++
T Consensus 395 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp 464 (578)
T 4a82_A 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLP 464 (578)
T ss_dssp EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTST
T ss_pred CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCc
Confidence 9999999999853 467899999999999987 99999998631 1122 22334444433 45
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..++.+|+. ..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+
T Consensus 465 ~g~~t~~~~~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~ 540 (578)
T 4a82_A 465 QGYDTEVGER-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--IT 540 (578)
T ss_dssp TGGGCBCCGG-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TT
T ss_pred chhhhhhccC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HH
Confidence 6788888854 45799999999999999999999999999999999999999999999985 48999999999875 45
Q ss_pred hcCEEEEEeCCEEEEecChhHHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.||+|++|++|++++.|+++|+.+
T Consensus 541 ~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 541 HADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp TCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCEEEEEECCEEEEECCHHHHHh
Confidence 699999999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=420.04 Aligned_cols=266 Identities=24% Similarity=0.309 Sum_probs=209.8
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc-c--C-CCCceeEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE-K--D-RPLPIFLK 71 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-~--~-~~~~~~l~ 71 (674)
.+.+|++.+.+|..++|.++.++.+... .++. .++.+.+++.. . . ......++
T Consensus 266 ~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri--~~~l~~~~~~~~~~~~~~~~~~~i~ 343 (582)
T 3b60_A 266 VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL--FAILDSEQEKDEGKRVIDRATGDLE 343 (582)
T ss_dssp HHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSCCSCCCCCBCCSCCCCCEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCccCCCCCCCCCCCcEE
Confidence 3456888899999999998887655421 0000 02222211110 1 1 11124599
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+
T Consensus 344 ~~~v~~~y~~-------------------------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~ 397 (582)
T 3b60_A 344 FRNVTFTYPG-------------------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDE 397 (582)
T ss_dssp EEEEEECSSS-------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSE
T ss_pred EEEEEEEcCC-------------------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCC
Confidence 9999997631 1256999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------c
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-------R 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~ 220 (674)
|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. + ..++ ++++++++.+++. +
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~ 468 (582)
T 3b60_A 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDN 468 (582)
T ss_dssp EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTT
T ss_pred CeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccc
Confidence 999999999853 467789999999999986 99999998631 1 1222 3456667766653 4
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..|+.+|+. ..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.
T Consensus 469 g~~~~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~ 544 (582)
T 3b60_A 469 GLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQ 544 (582)
T ss_dssp GGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTT
T ss_pred cccccccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHh
Confidence 677888754 467999999999999999999999999999999999999999999999975 9999999999875 457
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++|+.+
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 545 ADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=419.29 Aligned_cols=268 Identities=23% Similarity=0.325 Sum_probs=209.4
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh--------hcc-----------ccccccccCCCcccc---C-CCCceeEEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR-----------YSEIDIVDESSSIEK---D-RPLPIFLKFE 73 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~---~-~~~~~~l~~~ 73 (674)
.+.+|++.+.+|..++|.++.+..+... ... ....++.+.+++... . ......++++
T Consensus 266 i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 345 (582)
T 3b5x_A 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVK 345 (582)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEE
Confidence 3456788889999999998887655421 000 000022222211111 1 1113469999
Q ss_pred eEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE
Q 044602 74 DVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153 (674)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~ 153 (674)
||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|.+ ++.+|+
T Consensus 346 ~v~~~y~~-------------------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~ 399 (582)
T 3b5x_A 346 DVTFTYQG-------------------------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGS 399 (582)
T ss_pred EEEEEcCC-------------------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCE
Confidence 99998842 1246999999999999999999999999999999999987 456999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccc
Q 044602 154 ITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-------RCR 222 (674)
Q Consensus 154 I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 222 (674)
|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. + ..+ +++++++++.+++. +..
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~ 470 (582)
T 3b5x_A 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGL 470 (582)
T ss_pred EEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccc
Confidence 9999998753 467899999999999986 99999998631 1 122 23456666666654 456
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
|+.+|+. ..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||
T Consensus 471 ~t~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d 546 (582)
T 3b5x_A 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQAD 546 (582)
T ss_pred cchhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCC
Confidence 7778754 467999999999999999999999999999999999999999999999865 9999999999864 45799
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++|+.+
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 547 EILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998853
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=452.59 Aligned_cols=267 Identities=28% Similarity=0.408 Sum_probs=213.5
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hc-----------cccccccccCCCccc-------cCCCCceeEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RN-----------RYSEIDIVDESSSIE-------KDRPLPIFLK 71 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~-------~~~~~~~~l~ 71 (674)
..+|++.+.+|..++|.++.++.+... .. .....++.+.++..+ .....+..++
T Consensus 338 ~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~ 417 (1321)
T 4f4c_A 338 FYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEE
Confidence 345788889999999988887655421 00 000013333222111 1112234699
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
|+||+|+|+.. .++++|+|+|+++++||.+||+||||||||||+++|.|.+ ++.+
T Consensus 418 ~~nvsF~Y~~~------------------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~ 472 (1321)
T 4f4c_A 418 VENVHFTYPSR------------------------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLK 472 (1321)
T ss_dssp EEEEEECCSSS------------------------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSE
T ss_pred EEEeeeeCCCC------------------------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-cccc
Confidence 99999988631 2367999999999999999999999999999999999876 5679
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 220 (674)
|+|.+||+++++ .+|++||||+|++.+|++ ||+|||.|+.. ..+++ ++.++++..+ |++
T Consensus 473 G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~----~v~~a~~~a~l~~~i~~lp~ 542 (1321)
T 4f4c_A 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITRE----EMVAACKMANAEKFIKTLPN 542 (1321)
T ss_dssp EEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHH----HHHHHHHHTTCHHHHHHSTT
T ss_pred CcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchHH----HHHHHHHHccchhHHHcCCC
Confidence 999999999864 578899999999999998 99999999742 22332 2333333322 488
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..||.||+++. .||||||||++||||+++||+||+||||||+||++++..+.+.|+++.+ |+|+|+++|+++. .+.
T Consensus 543 G~~T~vGe~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~ 618 (1321)
T 4f4c_A 543 GYNTLVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRN 618 (1321)
T ss_dssp TTSSEESSSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTT
T ss_pred CCccEecCCCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHh
Confidence 99999998775 5999999999999999999999999999999999999999999999865 9999999999986 688
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|+|++.|+++|+++
T Consensus 619 aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 619 ADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp CSEEEEEETTEEEEEECHHHHHT
T ss_pred CCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999974
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=373.86 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. ...+++|+|+|++++ ||+++|+||||||||||+|+|+|++ +
T Consensus 2 l~~~~l~~~y~~~-----------------------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p- 55 (263)
T 2pjz_A 2 IQLKNVGITLSGK-----------------------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P- 55 (263)
T ss_dssp EEEEEEEEEEEEE-----------------------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-
T ss_pred EEEEEEEEEeCCC-----------------------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-
Confidence 7899999988521 011469999999999 9999999999999999999999987 5
Q ss_pred CccEEEECCEeCCh-hccccEE-EEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccc
Q 044602 150 VKGNITYNDIPYNP-ALKRRIG-FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-~~~~~ig-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 226 (674)
.+|+|.++|+++.. ..++.+| ||+|++.+ .+||+||+.++.... .. ..++++++++.+||. +..++++
T Consensus 56 ~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~ 126 (263)
T 2pjz_A 56 YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL 126 (263)
T ss_dssp CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG
T ss_pred CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh
Confidence 59999999998742 1256899 99999887 789999999876432 11 135688999999998 8777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC-EEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD-KLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~ 305 (674)
.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++|||+. .+.++|| +++
T Consensus 127 -----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~ 197 (263)
T 2pjz_A 127 -----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAY 197 (263)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEE
Confidence 48999999999999999999999999999999999999999999998753 9999999975 4678999 999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++++.|+++++.
T Consensus 198 ~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 198 FLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEETTEEEEEEEHHHHH
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999999875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=368.24 Aligned_cols=202 Identities=24% Similarity=0.369 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ . ++|+|+||++++||+++|+||||||||||||+|+|+++
T Consensus 9 ~~l~~~~ls~~y~---------------------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---------------------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEEEEEEEESS---------------------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEEEEEEeC---------------------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4589999998652 2 68999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
+.+|+|.++|+++. ..++.++||+|++.+++.+||+||+.++...... . .+ .++++++++.+||++. ++++
T Consensus 61 -p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~- 131 (214)
T 1sgw_A 61 -PLKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL- 131 (214)
T ss_dssp -CSEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-
T ss_pred -CCCeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-
Confidence 56999999999876 4677899999999999999999999997644211 1 11 3568899999999876 6554
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. +..++|+++++
T Consensus 132 ----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~ 206 (214)
T 1sgw_A 132 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY 206 (214)
T ss_dssp ----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe
Confidence 5899999999999999999999999999999999999999999999998668999999999864 67778887754
Q ss_pred eCCEE
Q 044602 308 SEGYP 312 (674)
Q Consensus 308 ~~G~i 312 (674)
+|+|
T Consensus 207 -~~~~ 210 (214)
T 1sgw_A 207 -STKI 210 (214)
T ss_dssp -BC--
T ss_pred -CCcc
Confidence 4554
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=422.80 Aligned_cols=263 Identities=27% Similarity=0.383 Sum_probs=203.7
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcccc-----CCCCceeEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIEK-----DRPLPIFLK 71 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ 71 (674)
+.+|++.+.+|..++|.++.++.+... .++ ..++.+.+++... ....+..++
T Consensus 279 ~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r--i~~~l~~~~~~~~~~~~~~~~~~~~i~ 356 (598)
T 3qf4_B 279 SGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER--IFEILDLEEEKDDPDAVELREVRGEIE 356 (598)
T ss_dssp HHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTSCCCCCCSSCCCCCSCCCCEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCCCCCCCCCCCCCCCCeEE
Confidence 346788888999999888776533210 001 0022222211110 111234699
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+ +.+++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+
T Consensus 357 ~~~v~~~y~--------------------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~ 409 (598)
T 3qf4_B 357 FKNVWFSYD--------------------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDR 409 (598)
T ss_dssp EEEEECCSS--------------------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSE
T ss_pred EEEEEEECC--------------------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCC
Confidence 999999763 1246999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 220 (674)
|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++... .+++ ++.+.++..+ +++
T Consensus 410 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~ 479 (598)
T 3qf4_B 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG-----ATDE----EIKEAAKLTHSDHFIKHLPE 479 (598)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-----CCTT----HHHHHTTTTTCHHHHHTSTT
T ss_pred eEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-----CCHH----HHHHHHHHhCCHHHHHhccc
Confidence 999999999853 567899999999999986 999999986321 1111 2233333332 356
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..++.+|+. ..+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.
T Consensus 480 g~~t~~~~~-g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~ 555 (598)
T 3qf4_B 480 GYETVLTDN-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KN 555 (598)
T ss_dssp GGGCBCHHH-HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HH
T ss_pred cccchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-Hc
Confidence 778888754 35799999999999999999999999999999999999999999999986 59999999999875 4 55
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++|+.+
T Consensus 556 ~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 556 ADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp CSEEEEECSSSEEECSCHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=450.50 Aligned_cols=219 Identities=28% Similarity=0.441 Sum_probs=190.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+.+ .+.+||+|+||+|+|||.+||+||||||||||+++|.|++
T Consensus 1075 g~I~f~nVsf~Y~~~------------------------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~- 1129 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER------------------------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY- 1129 (1321)
T ss_dssp CCEEEEEEEECCTTS------------------------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-
T ss_pred CeEEEEEEEEeCCCC------------------------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-
Confidence 469999999988632 2356999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
++.+|+|.+||+|+++ .+|++++|||||+.+|++ ||+|||.|+.. |.+.+++ ++.++++..+
T Consensus 1130 ~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~----ei~~Al~~a~l~~~I~ 1201 (1321)
T 4f4c_A 1130 DTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMA----QVEEAARLANIHNFIA 1201 (1321)
T ss_dssp CCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHH----HHHHHHHHTTCHHHHH
T ss_pred cCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHH----HHHHHHHHhCChHHHH
Confidence 5679999999999874 689999999999999998 99999988732 2233333 3444554443
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|++..||.||+++. +||||||||++|||||+++|+||+||||||+||++++..|.+.|+++. +|+|+|+|+|++++
T Consensus 1202 ~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT- 1278 (1321)
T 4f4c_A 1202 ELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT- 1278 (1321)
T ss_dssp TSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-
T ss_pred cCcCCCCCEecCCCc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-
Confidence 47889999997664 699999999999999999999999999999999999999999998875 48999999999986
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||+||++|+|++.|+|+|+++
T Consensus 1279 -i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1279 -VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp -TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 67799999999999999999999975
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=393.54 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+. +.+.+|+||||++++||+++|+||||||||||||+|+|++
T Consensus 18 ~~i~~~~l~~~y~~-------------------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~- 71 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-------------------------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL- 71 (390)
T ss_dssp CCEEEEEEEEESSS-------------------------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-
T ss_pred CeEEEEEEEEEecC-------------------------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-
Confidence 46999999997741 2356999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+ .+|+|.++|+++.. .+++.+|||+|++.+|+ +||+||+.+.. ... .++++++++.++|.+..+
T Consensus 72 ~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~ 139 (390)
T 3gd7_A 72 N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIE 139 (390)
T ss_dssp E-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHT
T ss_pred C-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHh
Confidence 4 68999999998753 35788999999999998 59999996421 112 246788999999987666
Q ss_pred ccccC------CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 224 TRVGG------GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 224 ~~vg~------~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+.... +...+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++. +++|+|++|||.. .
T Consensus 140 ~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~ 216 (390)
T 3gd7_A 140 QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--A 216 (390)
T ss_dssp TSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--G
T ss_pred hcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--H
Confidence 55431 1123499999999999999999999999999999999999999999999864 4899999999974 3
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|+++..|+++++.+
T Consensus 217 ~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 217 MLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp GTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 56799999999999999999999853
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=362.27 Aligned_cols=204 Identities=29% Similarity=0.439 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+++|+|+|+++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~~~~l~~~y~-------------------------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 59 (229)
T 2pze_A 6 EVVMENVTAFWE-------------------------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE- 59 (229)
T ss_dssp EEEEEEEEECSS-------------------------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeC-------------------------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-
Confidence 589999998663 123569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------c
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-------C 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~ 221 (674)
+.+|+|.++| +++||+|++.+++. ||+||+.++.. .... +.++.++.+++.+ .
T Consensus 60 p~~G~i~~~g---------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~ 119 (229)
T 2pze_A 60 PSEGKIKHSG---------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEK 119 (229)
T ss_dssp CSEEEEEECS---------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTG
T ss_pred CCccEEEECC---------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccc
Confidence 5699999998 49999999999886 99999988531 1111 2233444444432 2
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
.++.++ +.+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||++.. + ..
T Consensus 120 ~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~ 195 (229)
T 2pze_A 120 DNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KK 195 (229)
T ss_dssp GGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HH
T ss_pred cccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-Hh
Confidence 233333 23568999999999999999999999999999999999999999997 45654 48999999999753 4 46
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 196 ~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 196 ADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp CSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999998874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-44 Score=363.24 Aligned_cols=211 Identities=21% Similarity=0.362 Sum_probs=165.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. +.+++|+|+|+++++||+++|+||||||||||+|+|+|++ +
T Consensus 3 ~l~~~~l~~~y~~-------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 56 (237)
T 2cbz_A 3 SITVRNATFTWAR-------------------------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-D 56 (237)
T ss_dssp CEEEEEEEEESCT-------------------------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-E
T ss_pred eEEEEEEEEEeCC-------------------------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 3889999997731 1256999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVG 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 227 (674)
+.+|+|.++| .+|||+|++.+ +.+||+||+.++... . ....+......++.+.+++.+ ..++.++
T Consensus 57 p~~G~I~~~g---------~i~~v~Q~~~~-~~~tv~enl~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 122 (237)
T 2cbz_A 57 KVEGHVAIKG---------SVAYVPQQAWI-QNDSLRENILFGCQL--E--EPYYRSVIQACALLPDLEILPSGDRTEIG 122 (237)
T ss_dssp EEEEEEEECS---------CEEEECSSCCC-CSEEHHHHHHTTSCC--C--TTHHHHHHHHTTCHHHHTTSTTGGGSEES
T ss_pred CCCceEEECC---------EEEEEcCCCcC-CCcCHHHHhhCcccc--C--HHHHHHHHHHHhhHHHHHhcccccccccc
Confidence 5699999998 39999999875 467999999986321 1 111111111111233333321 2223332
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ---KVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||++||++.. + ..||++
T Consensus 123 -~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v 198 (237)
T 2cbz_A 123 -EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVI 198 (237)
T ss_dssp -TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEE
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEE
Confidence 3456899999999999999999999999999999999999999999995 443 48999999999865 3 579999
Q ss_pred EEEeCCEEEEecChhHHHH
Q 044602 305 LLISEGYPVYYGKARESME 323 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~ 323 (674)
++|++|++++.|+++++.+
T Consensus 199 ~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 199 IVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEeCCEEEEeCCHHHHhh
Confidence 9999999999999998753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=426.03 Aligned_cols=219 Identities=27% Similarity=0.401 Sum_probs=184.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.+ ..+++|+|+|+++++||++||+||||||||||+++|+|.+
T Consensus 386 g~i~~~~v~~~y~~~------------------------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~- 440 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR------------------------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY- 440 (1284)
T ss_dssp CCEEEEEEEECCSST------------------------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-
T ss_pred CeEEEEEEEEEcCCC------------------------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 469999999988521 1256999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR-----VQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL 218 (674)
++.+|+|.+||+++.. .+|+++|||+|++.+|+. ||+||+.++.. ..+.++..+. +++.++. +
T Consensus 441 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l 512 (1284)
T 3g5u_A 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--L 512 (1284)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--S
T ss_pred CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--c
Confidence 5569999999999753 577889999999999987 99999999842 1223222221 2333443 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.++++. +|+|+|+++|+++. +
T Consensus 513 ~~g~~t~~~~~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i- 588 (1284)
T 3g5u_A 513 PHQFDTLVGERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V- 588 (1284)
T ss_dssp TTGGGCCCSSSS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-
T ss_pred cccccccccCCC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-
Confidence 677899998654 5799999999999999999999999999999999999999999998875 49999999999864 4
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||+|++|++|++++.|+++|+++
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5699999999999999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=415.07 Aligned_cols=221 Identities=25% Similarity=0.424 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.. ..+++|+|+||++++||++||+||||||||||+++|+|+.
T Consensus 1029 g~i~~~~v~~~y~~~------------------------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~- 1083 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR------------------------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY- 1083 (1284)
T ss_dssp CCEEEEEEEBCCSCG------------------------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-
T ss_pred CcEEEEEEEEECCCC------------------------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-
Confidence 469999999988521 1246999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV-----QMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL 218 (674)
++.+|+|.+||++++. .+|+++|||+||+.+|+. ||+||+.++...+ ..+.++..+.. ++.++ .+
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l 1157 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SL 1157 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--ST
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hC
Confidence 5569999999999863 578899999999998875 9999998864211 12332222211 22222 35
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ .+|||||||||+|||||+++|+||+|||||+|||+.++..+.+.|+++. +|+|+|+++||++. +
T Consensus 1158 ~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i- 1233 (1284)
T 3g5u_A 1158 PDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I- 1233 (1284)
T ss_dssp TTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-
T ss_pred ccccccccCCCC-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-
Confidence 778899998654 5799999999999999999999999999999999999999999998864 59999999999875 4
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||||++|++|++++.|+++|+++
T Consensus 1234 ~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1234 QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 6699999999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=352.72 Aligned_cols=188 Identities=30% Similarity=0.484 Sum_probs=153.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.++| +++||+|++.+++. ||+||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~enl 119 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RISFCSQNSWIMPG-TIKENI 119 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCS---------CEEEECSSCCCCSS-BHHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECC---------EEEEEeCCCccCcc-cHHHHh
Confidence 45899999999999999999999999999999999987 45699999998 49999999998886 999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
. +. . ... .++++.++.+++.+ ..++.++ ..+.+||||||||++|||||+.+|++|||||||
T Consensus 120 ~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 120 I-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp H-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred h-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 8 42 1 111 12233444444432 2233333 234689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVL-QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|||+.++..+++.+ +++. +|+|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 188 s~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999974 5554 48999999999753 4 569999999999999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=352.45 Aligned_cols=190 Identities=24% Similarity=0.308 Sum_probs=165.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.+ ++.+||++|+..+.+.+||.|++..
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~ 440 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSK 440 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEE---------eeEEEEEecCccCCCCCcHHHHHHh
Confidence 5899999999999999999999999999999999874 56899976 2469999999877788899998876
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
..... ....++++++++.+||.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 441 ~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~ 508 (607)
T 3bk7_A 441 IDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508 (607)
T ss_dssp HHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred hhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHH
Confidence 41110 0123567889999999888887664 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHHH
Q 044602 271 KLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESME 323 (674)
Q Consensus 271 ~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 323 (674)
.+.+.|+++++ .|+|||++|||+. .+..+|||+++|++ |+++..|+++++.+
T Consensus 509 ~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 509 AVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999974 6999999999975 57889999999986 88889999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=348.78 Aligned_cols=190 Identities=25% Similarity=0.313 Sum_probs=163.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.+ ...+|||+|+....+.+||.|++..
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~ 370 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEW---------DLTVAYKPQYIKADYEGTVYELLSK 370 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE---------CceEEEEecCCcCCCCCcHHHHHHh
Confidence 5899999999999999999999999999999999874 56899975 2469999999877788899998875
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
...... ...++++++++.+|+.+..+++++ +|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 371 ~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~ 438 (538)
T 1yqt_A 371 IDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438 (538)
T ss_dssp HHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred hhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 411110 112467889999999877777654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHHH
Q 044602 271 KLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESME 323 (674)
Q Consensus 271 ~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 323 (674)
.+.+.|+++++ .|+|||++|||+. ++..+||||++|++ |+++..|+++++..
T Consensus 439 ~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 439 AVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999974 5999999999975 57889999999986 78899999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=340.39 Aligned_cols=191 Identities=23% Similarity=0.271 Sum_probs=161.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.+++ +.++|++|+......+||.||+.+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSC--------CCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC--------eeeEeechhcccccCCCHHHHHHH
Confidence 5788899999999999999999999999999999884 5699998764 358999999776667899999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
...... .. ....++++++.++|.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 354 ~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 354 ASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp HCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 421110 01 12357889999999888877654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHH
Q 044602 271 KLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESM 322 (674)
Q Consensus 271 ~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 322 (674)
.+++.|+++++ .|+|||++|||+. ++..+||||++|++ |.....+++.++.
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999976 5899999999975 57889999999986 5677777766543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=345.68 Aligned_cols=206 Identities=29% Similarity=0.381 Sum_probs=140.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHHcCCCCC------CccEEEECCEeC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLL---------------------KIVGGRLTDD------VKGNITYNDIPY 161 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl---------------------~~L~G~~~~~------~~G~I~~~g~~~ 161 (674)
+.+|+||||+|++||+++|+||||||||||+ ++++|...+. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5689999999999999999999999999998 7777765432 146677777665
Q ss_pred ChhccccEEEEccCCC-------------------CCCCCCHHHHHHHHHhhcCCCCCCHHHHH------HHHHHHHHHc
Q 044602 162 NPALKRRIGFVTQDDV-------------------LLPQLTVEETLVFAAFLRLPGNMNRQQKY------ARVQMILKEL 216 (674)
Q Consensus 162 ~~~~~~~igyv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~l 216 (674)
....++.+|+|+|... .++.+||.||+.+......... ...... ....++++.+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHc
Confidence 4333445666655432 2467899999987532221110 000000 1122458889
Q ss_pred CCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 217 GLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 217 gL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
||.+. .+++++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||+
T Consensus 190 gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99764 466554 899999999999999999998 9999999999999999999999999988899999999997
Q ss_pred chHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
. . ...||++++| ++|++++.|+++++.
T Consensus 265 ~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 D-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 5 3 4569999999 899999999999875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=333.88 Aligned_cols=192 Identities=23% Similarity=0.276 Sum_probs=161.8
Q ss_pred ccceeeeEEEEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPG-----EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~G-----e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lT 183 (674)
+.+++|+|+++++| |+++|+||||||||||+|+|+|+++ +.+|+. + .+..++|++|+.......|
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~------~---~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQD------I---PKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCC------C---CSCCEEEECSSCCCCCCSB
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcC------c---cCCcEEEecccccccCCcc
Confidence 35789999999999 7899999999999999999999885 457862 2 1346999999976655679
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+|++.... + .... ..+.++++++.++|.+..++.+ .+|||||||||+|||||+.+|+||||||||+|
T Consensus 430 v~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 430 VRQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAY 497 (608)
T ss_dssp HHHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 999876432 1 1111 1235678999999998888765 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHHH
Q 044602 264 LDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESME 323 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 323 (674)
||+.++..+.+.|+++++ .|+|||++|||+. ++..+||||++|++ |+++..|+|++++.
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999864 5999999999975 57889999999996 89999999998864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=338.04 Aligned_cols=185 Identities=22% Similarity=0.314 Sum_probs=156.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~ 187 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+.... .+++|++|+. .+++.+||.||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ltv~e~ 516 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTSVLDF 516 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSBHHHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCccccc--eeEEEEcccccccccCCcHHHH
Confidence 569999999999999999999999999999999995 332 44443222 2478999984 67888999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
+.+ ... .. .++++++++.+||. +..+++++ +||||||||++|||+|+.+|++|||||||+|||+
T Consensus 517 l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 517 VFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp HHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred HHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 975 111 11 45788999999995 56676654 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESME 323 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 323 (674)
.++..+.+.|++ .|+|||++|||.. .+.++||++++|++|+++ +.|+++++.+
T Consensus 582 ~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 582 VNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999988 5899999999965 577899999999999997 7899988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.54 Aligned_cols=181 Identities=23% Similarity=0.347 Sum_probs=151.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE---------EECCEeCCh------hccccEEEEcc
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI---------TYNDIPYNP------ALKRRIGFVTQ 174 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I---------~~~g~~~~~------~~~~~igyv~Q 174 (674)
.+|+|+| ++++||+++|+||||||||||+|+|+|.+. +.+|++ .++|.++.. ..+..+++++|
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4899999 999999999999999999999999999874 458885 456665431 11346899999
Q ss_pred CCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 175 DDVLLPQ---LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 175 ~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..+++. .||.|++.... ..++++++++.+||.+..++.++ +|||||||||+||+||+.+
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSC
T ss_pred hhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcC
Confidence 7543332 38999885321 11357889999999888777654 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
|++|||||||++||+.++..+.+.|++++++|+|||++|||.. .+.++||+|++|++|
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGE 234 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999888999999999965 578899999999865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.76 Aligned_cols=180 Identities=24% Similarity=0.356 Sum_probs=151.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE---------EECCEeCCh------hccccEEEEcc
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI---------TYNDIPYNP------ALKRRIGFVTQ 174 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I---------~~~g~~~~~------~~~~~igyv~Q 174 (674)
.+|+|+| ++++||+++|+||||||||||||+|+|.+.+ .+|++ .++|.++.. ..+..+++++|
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4899999 9999999999999999999999999998854 58986 456765432 12346889998
Q ss_pred CCCC----CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh
Q 044602 175 DDVL----LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 175 ~~~l----~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
+..+ +.. ||.||+... . ..++++++++.+||.+..++.++ +|||||||||+|||||+.
T Consensus 184 ~~~~~~~~~~~-tv~e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 184 YVDLLPKAVKG-KVRELLKKV-------D-----EVGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp CGGGGGGTCCS-BHHHHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhchhhccc-cHHHHhhhh-------H-----HHHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 7433 333 999998641 0 01357889999999988887764 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+|++|||||||++||+.++..+.+.|++++++|+|||++|||+. .+..+||+|++|+++
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 99999999999999999999999999999888999999999975 577899999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=340.43 Aligned_cols=208 Identities=23% Similarity=0.361 Sum_probs=161.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++|+|+. +.+++|+|+||++++||+++|+||||||||||+|+|+|.+.
T Consensus 670 ~mL~v~nLs~~Y~g-------------------------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG-------------------------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEEEEEEEECCTT-------------------------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred ceEEEEeeEEEeCC-------------------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999987631 12568999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCC----CCCCCHHHHHHHHHhhc------------C-C-------------
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVL----LPQLTVEETLVFAAFLR------------L-P------------- 197 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l----~~~lTV~e~l~~~~~~~------------~-~------------- 197 (674)
+.+|+|.++|. ..+||++|++.. ....|+.|++.+..... . +
T Consensus 725 -P~sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~ 796 (986)
T 2iw3_A 725 -PTSGEVYTHEN-------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE 796 (986)
T ss_dssp -CSEEEEEECTT-------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEET
T ss_pred -CCceEEEEcCc-------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccc
Confidence 56999999862 258999997521 22358888876532100 0 0
Q ss_pred --------------------------------------CCC--------C--------------------------HHHH
Q 044602 198 --------------------------------------GNM--------N--------------------------RQQK 205 (674)
Q Consensus 198 --------------------------------------~~~--------~--------------------------~~~~ 205 (674)
... . +...
T Consensus 797 g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~ 876 (986)
T 2iw3_A 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT 876 (986)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhH
Confidence 000 0 0001
Q ss_pred HHHHHHHHHHcCCCcc--ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 044602 206 YARVQMILKELGLERC--RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283 (674)
Q Consensus 206 ~~~v~~~l~~lgL~~~--~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g 283 (674)
.++++++++.+||.+. .++++ ++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence 3467889999999753 45554 489999999999999999999999999999999999999999888754 6
Q ss_pred cEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 284 ~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
.|||++|||+. .+.++||++++|++|+++..|+
T Consensus 949 ~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 79999999965 4678999999999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=327.90 Aligned_cols=196 Identities=30% Similarity=0.410 Sum_probs=150.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCccEEEECCEeCChhc-
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVG----------------------GRLTDDVKGNITYNDIPYNPAL- 165 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~----------------------G~~~~~~~G~I~~~g~~~~~~~- 165 (674)
+.+|+|||++|++||++||+||||||||||+++|. |.. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~--~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE--HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG--GCSEEEECCSSCSCSSTT
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc--ccCceeEeccccCCCCCC
Confidence 46899999999999999999999999999998754 211 12567888887653100
Q ss_pred --------------------------------------------cccEEEEccCCCCCC---------------------
Q 044602 166 --------------------------------------------KRRIGFVTQDDVLLP--------------------- 180 (674)
Q Consensus 166 --------------------------------------------~~~igyv~Q~~~l~~--------------------- 180 (674)
....|+++|+..+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 012344555433332
Q ss_pred -----------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHH
Q 044602 181 -----------QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 181 -----------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
.+||.||+.+.... ...+++.+.++.+||.+ ..++. +.+|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHH
Confidence 47999999875311 12245667888899864 33444 358999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChh
Q 044602 249 LVDP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKAR 319 (674)
Q Consensus 249 ~~~P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 319 (674)
+.+| ++|||||||+|||+.++..+++.|++++++|+|||++|||+.. .+.||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 5999999999999999999999999998889999999999853 4679999999 899999999999
Q ss_pred HHH
Q 044602 320 ESM 322 (674)
Q Consensus 320 ~~~ 322 (674)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-32 Score=313.25 Aligned_cols=187 Identities=26% Similarity=0.327 Sum_probs=144.6
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-----------EECCEeCCh----hcccc--EEEE
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-----------TYNDIPYNP----ALKRR--IGFV 172 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-----------~~~g~~~~~----~~~~~--igyv 172 (674)
..|++++ .+++||+++|+||||||||||||+|+|++. +.+|+| .+.|.++.. ...+. ..+.
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 3677777 689999999999999999999999999885 458988 333433221 11122 2333
Q ss_pred ccCCCC------CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHH
Q 044602 173 TQDDVL------LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGY 246 (674)
Q Consensus 173 ~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~ 246 (674)
+|.... -+..++.+++.... . ...++++++++.+||.+..++.++ +|||||||||+||+
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGM 234 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHH
Confidence 443211 12235666654321 1 112568899999999988887764 89999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEE
Q 044602 247 EILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 247 aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
||+.+|++|+|||||++||+.++..+.+.|++++++|+|||+++|++. ++..++|+|++|++|..++
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999888999999999975 5788999999999876444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-32 Score=307.69 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=139.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-----------EECCEeCChh----c--cccEEEEccC----CC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-----------TYNDIPYNPA----L--KRRIGFVTQD----DV 177 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-----------~~~g~~~~~~----~--~~~igyv~Q~----~~ 177 (674)
.++||++||+||||||||||+|+|+|.+.| .+|+| .++|.++... . ...+..+.|. +.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 469999999999999999999999998854 58998 6777765321 1 1234444444 33
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
++.. ||+|++... +..++++++++.+|+.+..++.++ +|||||||||+|||||+.+|+||+|
T Consensus 101 ~~~~-~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 101 FLKG-TVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TCCS-BHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hccC-cHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3443 888876422 011356789999999988887764 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|..
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 999999999999999999999976 999999999975 68889999999987543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=308.58 Aligned_cols=198 Identities=28% Similarity=0.430 Sum_probs=154.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHH---------HHHHcCCCC-----CCc------cEEEECCEeCChh----
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLL---------KIVGGRLTD-----DVK------GNITYNDIPYNPA---- 164 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl---------~~L~G~~~~-----~~~------G~I~~~g~~~~~~---- 164 (674)
...|+|||+++++||+++|+||||||||||+ +.+.+.... ..+ +.+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 445443211 112 3355555443210
Q ss_pred -----------------------------------------ccccEEEEccCCCCCCC----------------------
Q 044602 165 -----------------------------------------LKRRIGFVTQDDVLLPQ---------------------- 181 (674)
Q Consensus 165 -----------------------------------------~~~~igyv~Q~~~l~~~---------------------- 181 (674)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888766653
Q ss_pred ----------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhh
Q 044602 182 ----------LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 182 ----------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
+||.|++.|... . ....++.++|+.+||... .+. .+.+|||||||||+|||||+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhh
Confidence 678888887531 1 123567789999999642 233 345899999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHH
Q 044602 251 DP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARES 321 (674)
Q Consensus 251 ~P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 321 (674)
+| +||||||||+|||+.+...+++.|++++++|.|||+|+|+++ . .+.||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 799999999999999999999999999988999999999975 3 4669999999 89999999999998
Q ss_pred H
Q 044602 322 M 322 (674)
Q Consensus 322 ~ 322 (674)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=309.29 Aligned_cols=196 Identities=29% Similarity=0.411 Sum_probs=149.7
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHH-HHcCCC-------C-----------------CCcc-------EEEECC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKI-VGGRLT-------D-----------------DVKG-------NITYND 158 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~-L~G~~~-------~-----------------~~~G-------~I~~~g 158 (674)
+|+|||++|++||++||+|+||||||||++. |+|.+. + +.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 665321 1 1356 788998
Q ss_pred EeCChh--------------cc---------cc----------------------EEEEccCCCCCC-------------
Q 044602 159 IPYNPA--------------LK---------RR----------------------IGFVTQDDVLLP------------- 180 (674)
Q Consensus 159 ~~~~~~--------------~~---------~~----------------------igyv~Q~~~l~~------------- 180 (674)
.++... +| +. .|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 876311 11 11 122222222222
Q ss_pred -----------C--------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHH
Q 044602 181 -----------Q--------LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERK 240 (674)
Q Consensus 181 -----------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerq 240 (674)
. +|+.|++.|.. . . ...+++.++|+.+||... .++.+ .+|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLGQPA-----TELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHHH
Confidence 2 34555544421 1 1 123467899999999863 45544 489999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCE
Q 044602 241 RTSIGYEILVD---PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGY 311 (674)
Q Consensus 241 Rv~iA~aL~~~---P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~ 311 (674)
||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999988999999999975 45 789999999 7999
Q ss_pred EEEecChhHHH
Q 044602 312 PVYYGKARESM 322 (674)
Q Consensus 312 iv~~G~~~~~~ 322 (674)
+++.|+++++.
T Consensus 816 Iv~~g~~~el~ 826 (842)
T 2vf7_A 816 LVAQGTPAEVA 826 (842)
T ss_dssp EEEEECHHHHT
T ss_pred EEEEcCHHHHH
Confidence 99999999874
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=308.06 Aligned_cols=197 Identities=30% Similarity=0.431 Sum_probs=153.6
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-cCC---------CC----CCcc------EEEECCEeCChh-----
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG-GRL---------TD----DVKG------NITYNDIPYNPA----- 164 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G~~---------~~----~~~G------~I~~~g~~~~~~----- 164 (674)
..|+|||++|++||+++|+|+||||||||++.|. |.+ .+ ...| .|.++|.++...
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4799999999999999999999999999999853 211 11 0123 488888776310
Q ss_pred ---------c---------cccEEEEccCCCCC----------------------C------------------------
Q 044602 165 ---------L---------KRRIGFVTQDDVLL----------------------P------------------------ 180 (674)
Q Consensus 165 ---------~---------~~~igyv~Q~~~l~----------------------~------------------------ 180 (674)
. .+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 0 13357777743211 1
Q ss_pred --------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 181 --------QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 181 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
.+||.|++.|... . . ..+++.++++.+||.. ..++.+ .+|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcC
Confidence 3578888876421 1 1 1234578999999986 556554 48999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++.. .+.||+|++| ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 9999999999999999999999999999889999999999753 4689999999 789999999999874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=272.60 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=148.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------------CCc
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-------------------------------------DVK 151 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-------------------------------------~~~ 151 (674)
..+++++|+++++| +++|+|||||||||||++|+++... +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 9999999999999999999776531 236
Q ss_pred cEEEECCEeCCh----hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcC-----------------------CCCCC--
Q 044602 152 GNITYNDIPYNP----AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRL-----------------------PGNMN-- 201 (674)
Q Consensus 152 G~I~~~g~~~~~----~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~~~-- 201 (674)
|++++||++++. .+ +..+++++|++.++.. +..+...|...... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999999863 23 3348999999876654 56555544321100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 044602 202 --------------------------------RQQKYARVQMILKELGLERCR----------------HT---RVGG-- 228 (674)
Q Consensus 202 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 228 (674)
.....+.+++.++.+++++.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000123345566667665310 00 1110
Q ss_pred ----CccCc-cCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 229 ----GFIKG-ISGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 229 ----~~~~~-LSgGerqRv~iA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++. +...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999998 5999999999973 56789
Q ss_pred CEEEEE----eCCEEEEec
Q 044602 302 DKLLLI----SEGYPVYYG 316 (674)
Q Consensus 302 D~v~~L----~~G~iv~~G 316 (674)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-31 Score=298.12 Aligned_cols=186 Identities=17% Similarity=0.119 Sum_probs=149.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-E-EEECCEeCChhccccEEEEccCCC---CCCCCCHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-N-ITYNDIPYNPALKRRIGFVTQDDV---LLPQLTVEE 186 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~-I~~~g~~~~~~~~~~igyv~Q~~~---l~~~lTV~e 186 (674)
+.++|+++++||+++|+||||||||||+|+|+|+. .+.+| + |.+||. .++.++||+|+.. +.+.+||+|
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhh
Confidence 34899999999999999999999999999999987 45689 9 999982 3678999999984 455679999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE--ILVDPSL----LLLDE- 259 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a--L~~~P~i----llLDE- 259 (674)
|+ |+....... . ..+++.++++.+|+.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 654321110 0 1234556778888877654 24899999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc--h---HHHhhcCE-----EEEEe-CCEEEEecChhHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS--S---RMFHMFDK-----LLLIS-EGYPVYYGKARES 321 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 321 (674)
||++||+. ...+.+.+++ .|+|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|+++++
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555555544 3789999999976 1 45688999 99999 99999 9998765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=244.62 Aligned_cols=83 Identities=28% Similarity=0.434 Sum_probs=76.6
Q ss_pred ccCccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 230 FIKGISGGERKRTSIGYEIL------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ..+.||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCE
Confidence 45689999999999999999 799999999999999999999999999999888999999999975 3678999
Q ss_pred EEEEeCCEEEE
Q 044602 304 LLLISEGYPVY 314 (674)
Q Consensus 304 v~~L~~G~iv~ 314 (674)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-29 Score=250.68 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=102.3
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC---hhccccEEEEccCCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---PALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~---~~~~~~igyv~Q~~~l~~~lT 183 (674)
+.+.+|+|+ ++||+++|+||||||||||+|+|+|+ + +.+|+|.. .++. ...++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 446799996 89999999999999999999999997 4 46899843 2221 13467899999986
Q ss_pred HHHHH-HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 184 VEETL-VFAA----FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 184 V~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+||+ .+.. ... .... .++++++++. |+ |||||++|||||+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 011 0000 1234555543 32 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
|||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 899999999988 6689999 999965
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=238.30 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=127.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---------------------------------------------
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--------------------------------------------- 147 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~--------------------------------------------- 147 (674)
+++++++.+| +++|+||||||||||+++|...+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 999999999999999999984330
Q ss_pred ----CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC------CCCCCH----HHHHHHH
Q 044602 148 ----DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL------PGNMNR----QQKYARV 209 (674)
Q Consensus 148 ----~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~----~~~~~~v 209 (674)
.+.+|++.+||.+... .....+|+.+|+..+++.-++.+++......+. +..... +...+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1124688999988752 233456665655444432244444432111000 000000 0001111
Q ss_pred H---------------------HHHHHcCC------CccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEe
Q 044602 210 Q---------------------MILKELGL------ERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLD 258 (674)
Q Consensus 210 ~---------------------~~l~~lgL------~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLD 258 (674)
+ +.++. |+ ++..+. .+..||||||||++||++|+ .+|++|+||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~-----~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllD 248 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQ-----KLSLLSGGEKALVGLALLFALMEIKPSPFYVLD 248 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCC-----BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEE
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccC-----chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 1 12221 11 111222 34589999999999999997 588999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE--EEEeCCE-EEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL--LLISEGY-PVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v--~~L~~G~-iv~~G~~~~~ 321 (674)
|||++||+..+..+.+.|++++ +|+|+|++||++. +.+.||++ ++|.+|+ .+...+.++.
T Consensus 249 Ep~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 249 EVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999999999985 4899999999964 57889987 7888775 4455555554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=217.22 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=101.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCC--CCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVL--LPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l--~~~lTV~e~l~~~ 191 (674)
||||++++||+++|+||||||||||+|++.+ |...+++ +.+ .|+++|++.- +.. ++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-------~~~~~~~----d~~---~g~~~~~~~~~~~~~-~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-------PTEVISS----DFC---RGLMSDDENDQTVTG-AAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-------GGGEEEH----HHH---HHHHCSSTTCGGGHH-HHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-------CCeEEcc----HHH---HHHhcCcccchhhHH-HHHHHHH--
Confidence 6899999999999999999999999999653 1111111 112 2567776421 110 1222111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST---- 267 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~---- 267 (674)
.... .....|.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 12233444333322 247999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 268 ------------SANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 268 ------------~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
....+.+.|++++++|.|+|++||++..
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 5588899999887779999999999753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-28 Score=254.42 Aligned_cols=157 Identities=16% Similarity=0.234 Sum_probs=126.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH-H
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE-T 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e-~ 187 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|++ +|+| ++|++|++.+|+. |++| |
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I--------------~~~v~q~~~lf~~-ti~~~n 173 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSV--------------LSFANHKSHFWLA-SLADTR 173 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEE--------------ECGGGTTSGGGGG-GGTTCS
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceE--------------EEEecCccccccc-cHHHHh
Confidence 46899999999999999999999999999999999976 6888 4567888888876 8887 7
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+.+.. ..+. .+.+.++.+ |++..+ | ..|||||||| ||||+.+|+||| ||+||+.
T Consensus 174 i~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 174 AALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp CEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCST
T ss_pred hccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHH
Confidence 77641 1121 445666664 565555 2 4799999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
++..+.. .+|+++. .+.+|+| +|++|++++.|+++++..+|..
T Consensus 228 ~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 228 AEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp TCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9988862 1898764 6789999 9999999999999999666654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-27 Score=255.86 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=135.8
Q ss_pred ccceeeeEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhcccc
Q 044602 109 KHILKGITGSICPGE--------------------ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge--------------------~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ 168 (674)
+.+|+|||+++++|| ++||+||||||||||+|+|+|+.. +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t---~-- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVT---M-- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC-------C--
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecc---e--
Confidence 468999999999999 999999999999999999999874 56999999997653 2
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHH--HHHHHHHHH
Q 044602 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG--ERKRTSIGY 246 (674)
Q Consensus 169 igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~iA~ 246 (674)
.+|++|++ .++.+|+.||+.++.. ..+++++++.+++.+. +..+ .|||| ||||+.||+
T Consensus 110 ~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~~------~lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 110 ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFFI------IISATRFKKNDIDIAK 169 (413)
T ss_dssp CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEEE------EEESSCCCHHHHHHHH
T ss_pred eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCeE------EeCCCCccHHHHHHHH
Confidence 27899985 5778899998765421 1246788999998764 2222 39999 999999999
Q ss_pred HHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CcEEEEEecCCch-HHHhhcCEE
Q 044602 247 EILV----------DPSLLLLDEPTSGLDSTSANKLIQVLQKVA-----KA----GRTVITTIHQPSS-RMFHMFDKL 304 (674)
Q Consensus 247 aL~~----------~P~illLDEPTsgLD~~~~~~i~~~L~~l~-----~~----g~tvi~~~H~~~~-~i~~~~D~v 304 (674)
+|+. +|++++|||||+|||+.++.++++.|+++. +. ..++++++|+... .+.+++|++
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 9999 999999999999999999999999999984 33 2678899998653 245555544
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-24 Score=211.97 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~----~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
.++|+||||||||||+|+|+|.+. |.++|.+.. ...++.+||++|+. ++.+++ ++ ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~---- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF---- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhc----
Confidence 589999999999999999999763 445554331 13457899999975 222332 10 000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE-----ILVDPSLLLLDE--PTSGLDSTSANKL 272 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a-----L~~~P~illLDE--PTsgLD~~~~~~i 272 (674)
.. -.+..+. .+..||||||||++||++ ++.+|++++||| ||++||+.....+
T Consensus 64 ~~----------------~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 64 FT----------------SKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp CC----------------CSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred CC----------------ccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 00 0012232 345799999999999996 999999999999 9999999999999
Q ss_pred HHHHHHHHhCCcEEEEEec--CCchHHHhhcCEEEEEeCCEEEE
Q 044602 273 IQVLQKVAKAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 273 ~~~L~~l~~~g~tvi~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
.+.+++ .+.|+|+++| +....+..++|+ .+|++++
T Consensus 123 ~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 123 RQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 988865 4778999987 234567778887 5566665
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-27 Score=235.11 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=120.6
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.+++| .++++||+++|+||||||||||+|+|+|+++ ...+.+.+.+.+.....++.++|++|++.+|+.+|+.|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCC
Confidence 3568888 7999999999999999999999999999873 333332222222222235679999999888888888877
Q ss_pred HHHHHhhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 188 LVFAAFLRL---PGNMNRQQKYARVQMI------LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 188 l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+........ ....++++.++++++. ++.+|+.+..+.. ++.|| +|+.+|++++||
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHHHH
Confidence 642210000 0012344444555554 4455554444433 33566 899999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 259 EPTSGL----DSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 259 EPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
|||+|+ |+..+.++.+.++++.+ .|.|+|+++||+. ++.++||+|++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 999998 78899999999999975 4899999999975 5889999999985
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-24 Score=224.33 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=134.4
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc--cccEEEEccCCC-CCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL--KRRIGFVTQDDV-LLP 180 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~--~~~igyv~Q~~~-l~~ 180 (674)
++++|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.+... .+ ++.++|++|++. ++|
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 4678999999999999999999999999999998754 58999999988642 12 347999999988 889
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEe
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLD 258 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLD 258 (674)
.+||+||+.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 899999999864211 00 13456678877666554 4799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc--------hHHHhhcCEEEEEeCCEE
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS--------SRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 312 (674)
||+|||+.++ ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 229 -ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 -GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999999865 244543 5899999999422 223455678888888864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=229.68 Aligned_cols=109 Identities=22% Similarity=0.384 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 206 YARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 206 ~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
.++++ .++.+||.+. .++.+ .+|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|++.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~ 430 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG 430 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc
Confidence 34454 6788999864 56655 489999999999999999999 599999999999999999999999999888
Q ss_pred CcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 283 GRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 283 g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
|.|||+++|++. +.+.||+|++| ++|++++.|+++++.
T Consensus 431 G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 431 GNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999974 45789999999 799999999998764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-24 Score=221.29 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNR 202 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 202 (674)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH-
Confidence 479999999999999999999874 458999999998754 345789999999999999999999998754321 111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 203 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
.+.+.+.++ .+..+... .+||||||||+++||+++. ++++||||.|||+.. .+.++++.+.
T Consensus 80 ---~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 80 ---WEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp ---SHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred ---HHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 112333332 22233333 3799999999999999876 999999999999987 5566666665
Q ss_pred CcEEEEEecCC
Q 044602 283 GRTVITTIHQP 293 (674)
Q Consensus 283 g~tvi~~~H~~ 293 (674)
+++|+++|..
T Consensus 141 -~~vI~Vi~K~ 150 (270)
T 3sop_A 141 -VNIIPVIAKA 150 (270)
T ss_dssp -SEEEEEETTG
T ss_pred -CcEEEEEecc
Confidence 8999999884
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-23 Score=232.62 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=142.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE---eCCh---------hccccEEEEccC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI---PYNP---------ALKRRIGFVTQD 175 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~---~~~~---------~~~~~igyv~Q~ 175 (674)
...+|+++ +++.+||+++|+||||||||||+++|+|... +..|.|.++|+ ++.+ .+++.++||+|+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 35699999 9999999999999999999999999999874 46899999998 4422 256789999995
Q ss_pred -CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 176 -DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 176 -~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+.+++.+||.+|+.+.+..... ..++ .....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~-------~~~~---------v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRD-------RGQH---------VLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHT-------TTCE---------EEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-------CCCC---------HHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 5567788999999876532100 0000 0111121 24699999 999999 899998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAK---A-GR-----TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+|||+.+...+.+.++++.+ + |+ ||++++||.+ ...||++++|.+|+++..|+++++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999876 3 64 9999999987 467999999999999999988765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-23 Score=221.17 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=134.8
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc--cccEEEEccCCC-CCCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL--KRRIGFVTQDDV-LLPQ 181 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~--~~~igyv~Q~~~-l~~~ 181 (674)
+.+|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.+... .+ +..++|++|++. ++|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 468899999999999999999999999999998754 58999999988742 12 357999999988 8898
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDE 259 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDE 259 (674)
+||+||+.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 99999999864211 00 13456678776666554 4799 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc--------hHHHhhcCEEEEEeCCEE
Q 044602 260 PTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS--------SRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 312 (674)
||+|||+.++. +++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 34443 5899999999421 223455678888888863
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-25 Score=224.55 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=110.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
..-|+||||++++|++++|+||||||||||+|+|+|++ + |+|.+ |.+... ..++.++|++|++.+|+.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 34699999999999999999999999999999999976 3 99999 766421 23567999999876665432
Q ss_pred H-HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHH-----HHHHhhCCCEEE
Q 044602 184 V-EETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI-----GYEILVDPSLLL 256 (674)
Q Consensus 184 V-~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i-----A~aL~~~P~ill 256 (674)
. .+++.+.. .... ...++ +.++++++...+. ..+ ..+|||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~~~-~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEYDN-YANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEEEE-ETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhhhh-cccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 11111100 0000 01111 2456666654321 111 3699999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
|||||+++|..+...+.+.|+++.+ ++| ++| + ..||.|++++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~ 192 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIIND 192 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECC
Confidence 9999999999999999999988754 333 344 1 3466666554
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-21 Score=205.07 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=77.0
Q ss_pred CCccC-ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 228 GGFIK-GISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 228 ~~~~~-~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34455 69999999999999999 8999999999999999999999999998863 699999994 32
Q ss_pred HhhcCEEEEEeCCEEEEecChhHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-22 Score=216.83 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=107.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
++++++|+.+++|++++|+||||||||||+|+|+|.++ +.+|.|.++|.+... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 37999999999999999999999999999999999874 469999999864211 1233344332
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777653458999999986 578899999998875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-21 Score=226.73 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=123.5
Q ss_pred HHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC-CC--H--HHHHHHHHHHHH
Q 044602 140 KIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN-MN--R--QQKYARVQMILK 214 (674)
Q Consensus 140 ~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~--~--~~~~~~v~~~l~ 214 (674)
.+..+++ .+..|+|.++|+++.+ +..+||.|++.|......... .. . .+..++..+.|+
T Consensus 386 ~C~g~rl-~~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 449 (916)
T 3pih_A 386 VCGGRRL-NREALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLV 449 (916)
T ss_dssp TTCSCCB-CTTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHH
T ss_pred hcccccC-ChHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344455 3458999999998743 234688888877544332211 00 0 111233456788
Q ss_pred HcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044602 215 ELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291 (674)
Q Consensus 215 ~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 291 (674)
.+||.+. .++.+ .+|||||||||+|||+|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||+++|
T Consensus 450 ~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 450 DVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp TTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8999754 46554 4899999999999999999887 99999999999999999999999999888999999999
Q ss_pred CCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
|+. ....||+|++| ++|++++.|+++++.
T Consensus 525 d~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 525 DEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred CHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 974 34569999999 899999999999875
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=201.18 Aligned_cols=80 Identities=34% Similarity=0.441 Sum_probs=71.1
Q ss_pred ccCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 230 FIKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 230 ~~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 35689999999 67788888889999999999999999999999999999877789999999995 36789999
Q ss_pred EEEEe--CCE
Q 044602 304 LLLIS--EGY 311 (674)
Q Consensus 304 v~~L~--~G~ 311 (674)
+++|+ +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99986 454
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-22 Score=206.97 Aligned_cols=184 Identities=11% Similarity=0.107 Sum_probs=123.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEEECCEeCCh-hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.+... .+++++..+.|+.. +++.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4589999999999999999999999999999999997643 357 67655444432 33344444444322 13334
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE-RKRTSIGYEILVDPSLLLLDEPTS--- 262 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~iA~aL~~~P~illLDEPTs--- 262 (674)
++..+. .+.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 444321 11222333445554433321 111 113588998 66776 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEecCCc-h--------------------HHHhhcCEEEEEeCCEE
Q 044602 263 G---LDS-TSANKLIQVLQKVAKA-GRTVITTIHQPS-S--------------------RMFHMFDKLLLISEGYP 312 (674)
Q Consensus 263 g---LD~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 312 (674)
+ +|. .....+.+.|++++++ |+|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999865 999999999951 2 57789999999998874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-22 Score=203.33 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=113.6
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE------QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC------GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc------ccCCceEEEeCCc-CccccCHhH
Confidence 3467999999999999999999999999999999999865 334333 3567899999995 677899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
++.+........ .......+.+.+.++.+ .+..+..+ ..+|+||+||+++ ++++.+|+++++|||....|.
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 988754321110 01111123344555543 33444443 4799999999988 588889999999999888876
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
. +.++ .+.+|++++|+.......+++++ ++|+ +.+++.+.+.
T Consensus 149 ~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 149 E--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp H--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred H--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 4 2222 37899999998433223344444 6664 5677765443
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-24 Score=225.29 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=100.5
Q ss_pred eeEEE-EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH
Q 044602 114 GITGS-ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAA 192 (674)
Q Consensus 114 ~vs~~-i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~ 192 (674)
|+|.. +++|+++||+||||||||||+++|+|++.+ ..|. +.+++|+|++.+++. |++||+.+..
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~ 145 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMH 145 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC-------------CeEEEEecCccCCcc-cHHHHHHHHH
Confidence 34443 799999999999999999999999998744 3342 569999999999998 9999986532
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 193 FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
. .+.+.....+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||+|||++.+|+
T Consensus 146 ~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 146 R----KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp C----TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred h----cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1 11222233456778888887 44444444 37999999999999999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-20 Score=208.81 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=71.0
Q ss_pred cCcc-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 231 IKGI-SGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 231 ~~~L-SgGerqRv~iA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||++. +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 999999999975 45679999999
Q ss_pred eCC
Q 044602 308 SEG 310 (674)
Q Consensus 308 ~~G 310 (674)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 665
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=216.05 Aligned_cols=136 Identities=29% Similarity=0.432 Sum_probs=111.2
Q ss_pred CCCCCHHHHHHHHHhhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 179 LPQLTVEETLVFAAFLRLPGN---MNR---QQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..+||.|++.|...+.++.. +.+ ++..+++ +.|+.+||... .++.++ +|||||||||.||++|..+
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhC
Confidence 345799999999766543220 000 2334455 45889999864 566654 8999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . .+.||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999888999999999974 3 5679999999 799999999998764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-22 Score=228.96 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred cccceeeeEE-EEeCCeEEEEEcCCCCcHHHHHHH--HHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCC
Q 044602 108 YKHILKGITG-SICPGEILALMGPSGSGKTTLLKI--VGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 108 ~~~iL~~vs~-~i~~Ge~~ailG~sGsGKSTLl~~--L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~ 181 (674)
..++|+|+|+ .+++||+++|+||||||||||+++ ++|..+ +.+|.|+++|++... ..++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~- 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG- 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC-
Confidence 3679999999 999999999999999999999999 688764 348999999988532 23467899999754211
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
|+.+ ..... . +...++++.++|.+..+..+ +.|||| +|+++++||||
T Consensus 102 -----~l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 102 -----KLFI---LDASP--D-----PEGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp -----SEEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECST
T ss_pred -----cEEE---EecCc--c-----cchhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCHH
Confidence 1110 00000 0 00111222233333222222 245655 58899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH--------HHhhcCEEEEEeCCE
Q 044602 262 S-----GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR--------MFHMFDKLLLISEGY 311 (674)
Q Consensus 262 s-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~~G~ 311 (674)
+ +||+..+..+.+.++++++.|+|||+++|++... ...+||+|++|++|+
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8 4699999999999999988899999999998652 345699999999843
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=205.12 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=119.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~ 195 (674)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.+++|++. .++.++.. +
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~-------------~vi~~~~ee~~----~~l~~~~~-----~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA--NKE-------------RAILFAYEESR----AQLLRNAY-----S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTC-------------CEEEEESSSCH----HHHHHHHH-----T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCC-------------CEEEEEEeCCH----HHHHHHHH-----H
Confidence 459999999999999999999999999997633 343 12456667641 12333321 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHH
Q 044602 196 LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST-----SAN 270 (674)
Q Consensus 196 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~-----~~~ 270 (674)
. +.+. ++ +...|+.+..+.. +..|||||+||+.+|+++..+|++|++| ||++||.. .+.
T Consensus 331 ~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 331 W--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp T--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred c--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 1 1121 12 2345555555443 4589999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCc---------hHHHhhcCEEEEEeCCE
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQPS---------SRMFHMFDKLLLISEGY 311 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~~G~ 311 (674)
.+.++++.+++.|.|+|+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999888999999999971 34667899999999886
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-20 Score=225.08 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=115.2
Q ss_pred ccceeeeEEEEeC-------CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEE-EEccCCCCCC
Q 044602 109 KHILKGITGSICP-------GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG-FVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~-------Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ig-yv~Q~~~l~~ 180 (674)
+.|++|+++.+++ |++++|+||||||||||||++ |+... ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------------~aqiG~~Vpq~~~--- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------------MAQMGCYVPAEVC--- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------------HHTTTCCEESSEE---
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------------HhheeEEeccCcC---
Confidence 5699999999987 999999999999999999999 87621 23456 9999863
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.+||.|++.. .+|+.+.... +...+|+++++ +++|++++++|+++|||||
T Consensus 828 ~l~v~d~I~~------------------------rig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDEp 877 (1022)
T 2o8b_B 828 RLTPIDRVFT------------------------RLGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDEL 877 (1022)
T ss_dssp EECCCSBEEE------------------------ECC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEECT
T ss_pred CCCHHHHHHH------------------------HcCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEECC
Confidence 4566555421 1222221111 12357777665 9999999999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEE--EecChhH
Q 044602 261 TSGLDSTSA-NKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPV--YYGKARE 320 (674)
Q Consensus 261 TsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 320 (674)
|+|+|+... ..+++.|+.++++ |.++|++||+.. .+...+|++.++ +|++. +.|++++
T Consensus 878 ~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 878 GRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999985 5578899999876 999999999964 466779998887 48887 5565543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-20 Score=202.15 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=129.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----------hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----------ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----------~~~~~igyv~Q~~~ 177 (674)
..+|+++ +.+.+||+++|+||||||||||+++|+|... +..|.|.+.|++..+ .+++.+.+++|.+.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~ 136 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR 136 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC
Confidence 5699999 9999999999999999999999999999874 458999999875211 13456888887542
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+..+.+.-.. ....+.+.....+ .+... .+ ..+..+|+|| ||+++| +.+|++
T Consensus 137 -----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 137 -----PALERMKAAF------------TATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp -----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred -----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 3333322110 0001111111111 11100 00 1234799999 899999 688887
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAK--AGR-----TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+|||+.....+.+.++++.+ .|. ||++++||.+ ..+||++++|.+|+++..|+.++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999874 477 9999999987 467999999999999999988765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-19 Score=214.23 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=112.3
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH--------cCCCCCCccEEEECCEeCChhccccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG--------GRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~--------G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~ 179 (674)
.+.|++|+|+++++|++++|+||||||||||||+++ |...|. ++. .++.+ +
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~~--------------~~~~~---d--- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ESA--------------EVSIV---D--- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EEE--------------EEECC---S---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-ccc--------------cchHH---H---
Confidence 356899999999999999999999999999999993 422111 110 01110 0
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH--hhCCCEEEE
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI--LVDPSLLLL 257 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL--~~~P~illL 257 (674)
+++..+|+.+.. .+++|+|++++..+|+++ +.+|+++||
T Consensus 707 -------------------------------~i~~~ig~~d~l--------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 707 -------------------------------CILARVGAGDSQ--------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp -------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -------------------------------HHHHhcCchhhH--------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 011112222111 136888888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKL-IQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.....+ ...++.+++ .|.|+|++||+. ++..++|++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999888 667788876 499999999995 36789999999999999998887765
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-20 Score=189.08 Aligned_cols=133 Identities=19% Similarity=0.305 Sum_probs=100.0
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
++|+|+| +++|++++|+||||||||||+++|+|.+.+..+|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~-------------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHH--------------
Confidence 5899999 999999999999999999999999997743228999999877532111112222221
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
.+|+.. ..+ |++||++|..+|+++++|||| |+.+.
T Consensus 79 -------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 -------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 123221 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
..++ +. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 356999999999975 4678999988864
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=162.75 Aligned_cols=82 Identities=30% Similarity=0.397 Sum_probs=73.2
Q ss_pred CccCccCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 229 GFIKGISGGERKRTSIG------YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA------~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
..+.+||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 34668999999999876 899999999999999999999999999999999877799999999997 3578999
Q ss_pred EEEEE--eCCEE
Q 044602 303 KLLLI--SEGYP 312 (674)
Q Consensus 303 ~v~~L--~~G~i 312 (674)
++++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 46643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-19 Score=180.37 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=98.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C-----CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTD-D-----VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~-----~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
+-+++||+++|+||||||||||+++|+|...+ + ..|.|++++.+... .+.+++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 47999999999999999999999999995432 2 23467776654210 1234445554444433 44444322
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCC
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE-RKRTSIGYEILV-------DPSLLLLDEPTS 262 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~iA~aL~~-------~P~illLDEPTs 262 (674)
. ...++++ ++++..+++++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1123332 333455555555 999999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHHhC-CcEEEEEecCCch---HHHhhcCEEEEEeCCE
Q 044602 263 GLDSTS------------ANKLIQVLQKVAKA-GRTVITTIHQPSS---RMFHMFDKLLLISEGY 311 (674)
Q Consensus 263 gLD~~~------------~~~i~~~L~~l~~~-g~tvi~~~H~~~~---~i~~~~D~v~~L~~G~ 311 (674)
++|+.. ...+++.|++++++ |.|||+++|.... .+...+|++++|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999842 23678888887654 9999999995331 3677899999998753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-21 Score=190.41 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=114.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC--CCCCHHHHHHHHHhhcC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEETLVFAAFLRL 196 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~--~~lTV~e~l~~~~~~~~ 196 (674)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.+++.+.. ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~~ 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDLGHLPLEERLRVNY--DH 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--TS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCcccccHHHhcCCCC--CC
Confidence 578999999999999999999999997621 589999998876 5679999876532 11
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CC
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE----RKRTSIGYEILVDPSLLLLDEPTSG-------LD 265 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~iA~aL~~~P~illLDEPTsg-------LD 265 (674)
+ .....+++.+.++.+++.+..+.++ ..+|+|| +||+++|++++.+|+++++||||++ ||
T Consensus 62 ~----~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 62 P----DAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp G----GGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred h----hhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 1 1112345667788888776655543 3789996 4788999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH-HhCCcEEEEEecCCc
Q 044602 266 STSANKLIQVLQKV-AKAGRTVITTIHQPS 294 (674)
Q Consensus 266 ~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~ 294 (674)
+.....+.+.+++. .++|+|++.++|+..
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999875 456999999999843
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-18 Score=203.47 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=104.4
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.|++|+|+++++|++++|+||||||||||||++++.......|. .+.. -...++++ +.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa-~~~~i~~~---d~i~~~ig~~d- 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPA-EEATIGIV---DGIFTRMGAAD- 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSS-SEEEEECC---SEEEEEC-----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccc-hhhhhhHH---HHHHHhCChHH-
Confidence 4679999999999999999999999999999999986421111111 0000 00111211 11222222211
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
..... ...+|+|++|++.|+++ +.+|+++||||||+|||+.
T Consensus 728 ---------------------------------~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 728 ---------------------------------NIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred ---------------------------------HHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 11111 23799999999999998 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEE-EeCCEEEE
Q 044602 268 SANKLI-QVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLL-ISEGYPVY 314 (674)
Q Consensus 268 ~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~ 314 (674)
....+. ..++.+++ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 999997 77788865 5999999999964 4566765431 34444443
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-18 Score=203.40 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=107.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+++|+|++ |++++|+||||||||||||+|+|....+..|.+. + ..+..+++++| +++.+++.||+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p---a~~~~i~~v~~---i~~~~~~~d~l 632 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P---AEEAHLPLFDG---IYTRIGASDDL 632 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S---SSEEEECCCSE---EEEECCC----
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e---hhccceeeHHH---hhccCCHHHHH
Confidence 5689999999 9999999999999999999999965323356542 1 12345788776 55666666654
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI--LVDPSLLLLDEP---TSG 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL--~~~P~illLDEP---Tsg 263 (674)
. .++|+|+++++.+|+++ +.+|+++||||| |++
T Consensus 633 ~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~ 670 (765)
T 1ewq_A 633 A------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSS 670 (765)
T ss_dssp --------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCH
T ss_pred H------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCC
Confidence 2 14789999999999999 999999999999 999
Q ss_pred CCHHHH-HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEe
Q 044602 264 LDSTSA-NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYY 315 (674)
Q Consensus 264 LD~~~~-~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 315 (674)
||..+. ..+++.|++ .|.|+|++||+.. ...++ .-.+.++++...
T Consensus 671 lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 671 LDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 999875 578888766 4899999999953 34554 222344555444
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-19 Score=186.05 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=108.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc--cccEEEEccCCCCCCCCCHHHHHHH
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL--KRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~--~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
+|++++|+||||||||||++.|+|++.+ .+|+|.++|.+... .+ ++.++||+|++.++|.+||+||+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999999999998754 58999999998632 11 3569999999999998999999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
+..... -..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+..
T Consensus 180 ~~~~~~------------d~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~ 234 (304)
T 1rj9_A 180 MKARGY------------DLLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQ 234 (304)
T ss_dssp HHHHTC------------SEEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCT
T ss_pred HHhCCC------------CEEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHH
Confidence 532110 0012222333322221 2455669999999999999995444 45555556
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
.+++.++++.+. |.|+|++||+..
T Consensus 235 ~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 677777777654 899999999853
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-20 Score=212.42 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=113.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
+||+|||||||||||++|+|+..|..+|.|.++|.++. ..+++.+||++|++.+++.+||+||+.++......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~ 127 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 127 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875546999999998852 24677899999999999999999999876321100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHH
Q 044602 198 GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP------TSGLDSTSANK 271 (674)
Q Consensus 198 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP------TsgLD~~~~~~ 271 (674)
. .-++. + +++.++.+...+|+++++||| |+|||+..+..
T Consensus 128 ~----------------~~~~s---~----------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~ 172 (608)
T 3szr_A 128 E----------------GMGIS---H----------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYK 172 (608)
T ss_dssp S----------------SSCCC---S----------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHH
T ss_pred C----------------ccccc---h----------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHH
Confidence 0 00111 0 111222223458999999999 99999999999
Q ss_pred HHHHHHHHHhC--CcEEEEEecCCch------HHHhhc-----CEEEEEeCCEEEEecChhHHHHHH
Q 044602 272 LIQVLQKVAKA--GRTVITTIHQPSS------RMFHMF-----DKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 272 i~~~L~~l~~~--g~tvi~~~H~~~~------~i~~~~-----D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
+.+.++++.++ +.++++++|+... .+.+.. ..|.++.++.++..|+.+++.+..
T Consensus 173 i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 173 IKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 99999997543 6788899998651 222222 468999999998888876655443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-20 Score=192.35 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=87.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChh-ccccEEEEccCCCCCCCCCHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA-LKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~-~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+.++++++++| +|+||||+|||||++.|.|....+.+| |.++|.++... -.+.+++++|++.+...+||.
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchh
Confidence 4467999999998 999999999999999999962244578 88888776432 235689999998888889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS-GL 264 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs-gL 264 (674)
|+..++.... ..+.....++.+. +..+.. .+++|||||||+.+||+++ ++++||||+ ||
T Consensus 82 Dt~g~~~~~~-----~~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~L 141 (301)
T 2qnr_A 82 DTPGYGDAIN-----CRDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHGL 141 (301)
T ss_dssp EEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSC
T ss_pred hhhhhhhhcC-----cHHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccCC
Confidence 9887764321 0000011112211 122333 3589999999999988875 999999998 59
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCch
Q 044602 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSS 295 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~ 295 (674)
|+... +.++++.++ +.++|++.||..+
T Consensus 142 d~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 142 KPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred CHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99873 556666543 7899999999653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-20 Score=179.53 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
||+++|+||||||||||+++|+|.+. .+| |.++|.+..+ .+++++||++|+. ... ++++. .+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~---- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG---- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc----
Confidence 78999999999999999999999874 589 9999987753 4577899999975 111 11110 110
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRT-SIGY---EILVDPSLLLLDE--PTSGLDSTSANKL 272 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~iA~---aL~~~P~illLDE--PTsgLD~~~~~~i 272 (674)
++.++ ..+..+|. +...+|+|||+++ ++++ |+..+|++||+|| ||..+|......+
T Consensus 66 ----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 66 ----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp ----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred ----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 01111 11123442 2346999999998 4454 5799999999999 8999998765555
Q ss_pred HHHHHHHHhCCcEEEE----EecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 273 IQVLQKVAKAGRTVIT----TIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 273 ~~~L~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.+.+ +...++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444 44555553 238853 3456777777888887654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-19 Score=188.23 Aligned_cols=165 Identities=21% Similarity=0.147 Sum_probs=106.8
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCc----cE-EEECCEeCChhccccEEEEccCCCCCCCCC
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVK----GN-ITYNDIPYNPALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~----G~-I~~~g~~~~~~~~~~igyv~Q~~~l~~~lT 183 (674)
.|+++ ++.+++|++++|+||||||||||++.+++... ++.+ |+ |++++.+.. .++++++++|+..+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 46665 68999999999999999999999999999762 2234 67 888887642 13456677776655443 5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-------hCCCEEE
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-------VDPSLLL 256 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-------~~P~ill 256 (674)
+.||+.+... .-|.+|+|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 5554433210 01345666666666666 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 257 LDEPTSGLDSTS------------ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 257 LDEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
+||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++..
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 999999999862 3566677777765 4899999999864 33334455566667776655543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-18 Score=198.41 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=110.7
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.+++|+|++ ++|++++|+||||||||||||+|+|.......| ..+.. .+..++++.| +++.+++.|+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~d~ 662 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-QKVEIGPIDR---IFTRVGAADD 662 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-SEEEECCCCE---EEEEEC----
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-hcccceeHHH---HHhhCCHHHH
Confidence 35689999999 999999999999999999999999864211122 11111 1234666655 5555666665
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+..+ ...+|+++++ ++.+...+.+|+++||||||+|+|+.
T Consensus 663 l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 663 LASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 5321 0135666654 55555679999999999999999998
Q ss_pred HHHHH-HHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 268 SANKL-IQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 268 ~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
....+ .+.++.+.+ .|.++|++||+.. +..++|++..+.+|++.....
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 87776 778888887 4999999999974 467899888888888776543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-17 Score=179.67 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=94.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
+|+++ ...+|++++|+|||||||||||++|+|.+.+..+|.|...+.++....+...+++.|.......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~--------- 182 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDT--------- 182 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB---------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecccc---------
Confidence 55555 5789999999999999999999999998744335777655444432233334455554321111
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
++-.+ +||++|..+|++|++|||| |.++..
T Consensus 183 -------------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~ 212 (356)
T 3jvv_A 183 -------------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR 212 (356)
T ss_dssp -------------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH
T ss_pred -------------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH
Confidence 11111 9999999999999999999 665544
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
.+.++++.|.||++++|+.+. ...+||++.|..|
T Consensus 213 ----~~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 213 ----LALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp ----HHHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred ----HHHHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 444456679999999999874 4789999998654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-17 Score=167.20 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=111.3
Q ss_pred ccceeeeEE-EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-hccc---cEEEEccCCCCCCCCC
Q 044602 109 KHILKGITG-SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKR---RIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~-~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-~~~~---~igyv~Q~~~l~~~lT 183 (674)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.+... .+++ .+++.+|+.... .++
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 446888885 899999999999999999999999998653 235667665543321 1111 122222210000 000
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPT 261 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDEPT 261 (674)
+.+ ... +.++ . ..+ ....|.+|.++...+.....+|+ ++++||||
T Consensus 87 ~~~------------~~~------------~~~~-~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 IID------------ALM------------KEKE-D----QWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp EEE------------CCC-----------------C----TTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred EEe------------ccc------------cccC-c----eee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000 000 0000 0 000 12459999999888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCcEEEEEecCCc-------hHHHhhcCEEEEEeCCE
Q 044602 262 SGL--DSTSANKLIQVLQKVAK-AGRTVITTIHQPS-------SRMFHMFDKLLLISEGY 311 (674)
Q Consensus 262 sgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~~L~~G~ 311 (674)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.||+|++|++.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 888 99999999999999875 5999999999972 34788999999998653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=162.17 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=105.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
.+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. ...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g-- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG-- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH--
Confidence 589999999999999999999999998542 46653 3544321 3468888766532 01222221 111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHH
Q 044602 198 GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS--GLDSTSA---NKL 272 (674)
Q Consensus 198 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs--gLD~~~~---~~i 272 (674)
..... ...+++++.+++.+..+.. +..||+||+|++ ++++.+|+++++||||+ ++|.... ..+
T Consensus 92 ~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 92 AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 11122 2356677888877665544 357999998876 68889999999999999 9998554 788
Q ss_pred HHHHHHHHh-CCcEEEEEecCCc
Q 044602 273 IQVLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 273 ~~~L~~l~~-~g~tvi~~~H~~~ 294 (674)
++.|+++++ .|+|||+++|+..
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHcCCEEEEEecCCC
Confidence 889998874 5999999999964
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-18 Score=169.72 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=94.4
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----CCCccEEEECCEeCChhccccEEEEccCCCC----CCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNPALKRRIGFVTQDDVL----LPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~----~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l----~~~ 181 (674)
.+|++ +.+++|+.++|+|+||||||||+|.|+|... .+..|.+.+.+.-. +...+-++ +.+.+ .+.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~~~~l~-Dt~G~~~~~~~~ 89 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VADGKRLV-DLPGYGYAEVPE 89 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EETTEEEE-ECCCCC------
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecCCEEEE-ECcCCcccccCH
Confidence 36777 8899999999999999999999999998651 23456654422100 00011111 11110 000
Q ss_pred CC---HHHHHHHHHhh-c----------CCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHH-HHHH
Q 044602 182 LT---VEETLVFAAFL-R----------LPGNMNRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKR-TSIG 245 (674)
Q Consensus 182 lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqR-v~iA 245 (674)
-. .+..+...... + .....+. ..+.+.+.++..+++... .++ ...+|+||||| +..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK-----~D~~s~~~~~~~~~~~ 162 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTK-----ADKLASGARKAQLNMV 162 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEEC-----GGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEec-----ccCCCchhHHHHHHHH
Confidence 00 11112111110 0 0001111 223455666667765431 222 23699999999 8999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 044602 246 YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285 (674)
Q Consensus 246 ~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 285 (674)
++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 163 ~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 163 REAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999998766644
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-17 Score=166.60 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=104.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCChhccccEEEEccCCCCCCCCCH----HHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV----EETL 188 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV----~e~l 188 (674)
.-.-..++|++++|+||||||||||+|+|+|..++ ..+|.|.+++.+.....++.++|++|++..|+.+++ .|++
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 33456799999999999999999999999998754 468999999877654445679999997655544333 1221
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+. |+ ..+.| +++ +.+++..++++||| ||+.+
T Consensus 88 ~~~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 00 00122 222 34566678999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
+..+.+.+. +++||++++|++.. +.+ |+ +.+| .++++++..-+..
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 999999876 58999999999753 333 43 6778 6788888765543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-16 Score=174.97 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=91.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
.+.+++|+||+| +|+||||||||||+|+|+|...+ +..|.+.+++.+ ....+.+++++|++.+++.+||.|
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv~D 94 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTIVD 94 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCEEEEEECC------CEEEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--ceeeeeEEEEEecCCcccceeeee
Confidence 467999999998 99999999999999999997642 212222222111 112356899999988888899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC---EEEEeCCC-C
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS---LLLLDEPT-S 262 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~---illLDEPT-s 262 (674)
|+.++.... .......+.+.++ ..++.+++||++|||+++.+|+ +|++|||| .
T Consensus 95 t~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 95 TPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp CC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred chhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 988764321 1111111211121 1366678889999999999999 99999999 6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
|||+... +.++++.. +.++|+++|..
T Consensus 152 ~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 152 GLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp SCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9998873 44555544 78888888874
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=142.54 Aligned_cols=90 Identities=22% Similarity=0.394 Sum_probs=73.1
Q ss_pred cCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 231 IKGISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|++||+. .+...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999865 57899999995 35789999986
Q ss_pred Ee--CCEE-EEecChhHHHH
Q 044602 307 IS--EGYP-VYYGKARESME 323 (674)
Q Consensus 307 L~--~G~i-v~~G~~~~~~~ 323 (674)
+. +|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 64 6643 33444444443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-19 Score=174.64 Aligned_cols=170 Identities=12% Similarity=0.041 Sum_probs=112.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN 201 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 201 (674)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.....+.+|+++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNF------ 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHH------
Confidence 789999999999999999999972 368999998764321 23567777654445567888877653211
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccC---CccCcc--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 202 RQQKYARVQMILKELGLERCRHTRVGG---GFIKGI--SGGERKRTSIGY------EILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 202 ~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~iA~------aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
+. -+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+....
T Consensus 70 -----------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 70 -----------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp -----------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred -----------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 00 0000011110000 001234 888888888888 9999999888884 89998888
Q ss_pred HHHHHHHHHHhCCcEEEEEecC-CchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQ-PSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.++.+.+.+.++|.++|+ ++ ++.+.||+|+ ++|+++..|+++-+.
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCchh
Confidence 8 88888876567899999998 65 4788999998 999999999987654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-15 Score=146.36 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=99.6
Q ss_pred cceeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 110 HILKGIT-GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 110 ~iL~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.|+++. +-+++|++++|+||||||||||++.+++ .. .+. +.|+..++.+ +.. .+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~-~~~---------------v~~i~~~~~~----~~~-~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS-GKK---------------VAYVDTEGGF----SPE-RL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH-CSE---------------EEEEESSCCC----CHH-HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc-CCc---------------EEEEECCCCC----CHH-HH
Confidence 3566666 4799999999999999999999999998 11 222 2333322211 111 11
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE--RKRTSIGYEILVD-PSLLLLDEPTSGLD 265 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~iA~aL~~~-P~illLDEPTsgLD 265 (674)
.-... .. .... +++++.+. + ...|+++ +|+++.+++++.+ |+++++||||+.+|
T Consensus 63 ~~~~~-~~--~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 63 VQMAE-TR--GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHH-TT--TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHH-hc--CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 10000 00 1111 11222221 1 1344553 6788889999986 99999999999999
Q ss_pred HHH--------HHHHHHHHHHHHhC-CcEEEEEecCCch------------HHHhhcCEEEEEeCC
Q 044602 266 STS--------ANKLIQVLQKVAKA-GRTVITTIHQPSS------------RMFHMFDKLLLISEG 310 (674)
Q Consensus 266 ~~~--------~~~i~~~L~~l~~~-g~tvi~~~H~~~~------------~i~~~~D~v~~L~~G 310 (674)
+.. ...+++.|++++++ |.|||+++|.... .+...||++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 743 24566668887764 8999999998642 467889999999854
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-17 Score=162.55 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=95.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChh--ccccEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA--LKRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~--~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~ 195 (674)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.++... .++.++|++|+.. +.+||.||+.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 36799999999999999999999999962 479999998765321 1234677777643 3568999987654221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044602 196 LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275 (674)
Q Consensus 196 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~ 275 (674)
..... ...++.+++..++..... . +..+..+|+|++||++++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00000 000011111111111110 0 1112369999999999999999999876 688877777777
Q ss_pred HHHHHhCCcEEEEEe
Q 044602 276 LQKVAKAGRTVITTI 290 (674)
Q Consensus 276 L~~l~~~g~tvi~~~ 290 (674)
++.+.+.+..+|.++
T Consensus 144 ~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 144 FADLGAFEHHVLPVS 158 (191)
T ss_dssp TTCCGGGGGGEEECT
T ss_pred HhccCcccccEEECC
Confidence 765543233344333
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-16 Score=167.75 Aligned_cols=174 Identities=12% Similarity=0.105 Sum_probs=112.4
Q ss_pred cccceeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 044602 108 YKHILKGITGSICPGEI--LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~--~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
..+ |+++|+++++|++ ++|+||||||||||+|+|+|... .|.-.- ... ....++.++|++|++.+++.+||.
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~~-~~~-~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPAT-HTQ-PGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------CC-SSCEEEEEEEEEEC--CEEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcCC-CCC-ccceEeeEEEEeecCccccccchh
Confidence 345 9999999999999 99999999999999999999741 222110 000 112345799999999888889999
Q ss_pred HHHHHHHhhcCCCCC-CH---HHHHHHHHHHHHHc-CCCc----ccccc----cc--CCccCccCHHHHHHHHHHHHHhh
Q 044602 186 ETLVFAAFLRLPGNM-NR---QQKYARVQMILKEL-GLER----CRHTR----VG--GGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 186 e~l~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
||+.|+.... ... .+ +......++.++.. ++.. ..|++ +. ....++|+-.+ +.|+++|..
T Consensus 101 D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~ 175 (427)
T 2qag_B 101 STVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDS 175 (427)
T ss_dssp EEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCS
T ss_pred hhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhh
Confidence 9987753210 000 00 11233455566654 4431 12322 11 00113577666 789999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEecC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQK-VAKAGRTVITTIHQ 292 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 292 (674)
+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 176 ~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 176 KVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999998886 77779999888754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-18 Score=184.76 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=103.1
Q ss_pred ceeeeEEEEeC--CeEEEEEcCCCCcHHHHHHHHHcCCCCCCc----cEEEEC----CEeCC---hhccccEEEEccCCC
Q 044602 111 ILKGITGSICP--GEILALMGPSGSGKTTLLKIVGGRLTDDVK----GNITYN----DIPYN---PALKRRIGFVTQDDV 177 (674)
Q Consensus 111 iL~~vs~~i~~--Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~----G~I~~~----g~~~~---~~~~~~igyv~Q~~~ 177 (674)
+.+.|++.+++ |+.++|+||||||||||+|+|+|++. +.+ |+|.++ |.+.. .++ +.|++++|+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999874 457 777663 22211 011 12333333221
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-hCCCEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-VDPSLLL 256 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-~~P~ill 256 (674)
+++ .|+.||+.+. + .+..++. ...+|+|++||..+++++. .+|++++
T Consensus 235 ~~~-~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DYA-VRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HHH-HHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HHH-HhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 111 1222222110 0 1111111 1246778888888888775 5999999
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 257 LDE---PT------SGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 257 LDE---PT------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
||| |+ .++|...+..+.+.|+++.+ .|.++++++|. + +..+++|++.+++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 999 65 58999999999999988765 48999999975 3 3456666665554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-15 Score=164.92 Aligned_cols=132 Identities=19% Similarity=0.313 Sum_probs=100.0
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.+|++++ +++|++++|+||||||||||+++|+|.+.+..+|+|.+.|.++....++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-------------
Confidence 4788876 8999999999999999999999999976432279998877666434566788888841
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
+|+.. ..+ +.+|+++|..+|+++++|||| |.++.
T Consensus 191 --------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 --------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp --------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred --------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 22210 134 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.. .++. +..|.+++.++|+.+ +.+.+||++.|.
T Consensus 225 ~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 225 ET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 3443 356899999999954 577888887664
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-17 Score=168.95 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVG---GRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~---G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
++++++|+||||||||||+++|+ |.. .+..|+|.++|.+......+.+++++|+..+++..|+.+++.........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999 976 44589998887654323334456677888888888999999875321000
Q ss_pred -----CCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCCccCccCHHHHHHHHHHHHH-hhCCCEEEEe----
Q 044602 198 -----GNMNRQQKYARVQMILK--ELGLERCR-------HTRVGGGFIKGISGGERKRTSIGYEI-LVDPSLLLLD---- 258 (674)
Q Consensus 198 -----~~~~~~~~~~~v~~~l~--~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~iA~aL-~~~P~illLD---- 258 (674)
....+.. ..++.+.+ .+++--.. -.++.++.+..||| |+ +++ +.+|++++||
T Consensus 105 ~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 105 QHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp SCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0111111 12222221 12200000 01111233457999 66 677 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAG 283 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g 283 (674)
|||++||..+...+.+.++++.+++
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-18 Score=179.00 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC-------CCCccEEEECCEeCCh-------------------hccccEEEE---
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT-------DDVKGNITYNDIPYNP-------------------ALKRRIGFV--- 172 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~-------~~~~G~I~~~g~~~~~-------------------~~~~~igyv--- 172 (674)
=++++|+|+||||||||+|.|.|... .+..|+|.+||.++.. ++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 36899999999999999999998752 3468999999987642 233457777
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGNM---NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL 249 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~ 249 (674)
+|+..+++..+|.||..++......... .......+++.++..+++.+..++.. ++|+||+||+..+++++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 6776666677888876543110000000 00000011122233344444444322 69999999999888888
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+|+++ ||| ..+.+.|+++. .+.||++++|++.+ +..++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 999887 888 77888888875 58999999998653 333443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-15 Score=159.37 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=100.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC-Ch-hccccEEEEc-cCCCCCCCCCHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY-NP-ALKRRIGFVT-QDDVLLPQLTVEET 187 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~-~~-~~~~~igyv~-Q~~~l~~~lTV~e~ 187 (674)
+++++|+.+++|++++|+||||||||||+|+|+|.++ +.+|.|.++|..- .. ..++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 3499999999999999999999999999999999874 4699999998532 21 2567799998 65431
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+++++..+|-.|+.++..+|+.+++||++.
T Consensus 234 ---------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ---------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ---------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 011222355666667777899999999986
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
.++.+.|+.+.....|++.++|..+ ....+||+..+.+|.
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667776543467899999965 467889998888764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-14 Score=155.26 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=88.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEEC-CEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~-g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
-+++++.. .+|++++|+||||||||||+|+|+|....+.+|+|.++ |.+.....++.+++++|+..++++.||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--
Confidence 35666664 47999999999999999999999998741568999987 766544456689999999989998899984
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
+ + ...+.++..+.+.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 282 -~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 -G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455666677889999999987777654 4899 999999999764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-16 Score=151.25 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC--CccEEEECCEeCC-------hhcc-ccEE----EEccCCCCCCCCCHHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTDD--VKGNITYNDIPYN-------PALK-RRIG----FVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~~--~~G~I~~~g~~~~-------~~~~-~~ig----yv~Q~~~l~~~lTV~e~l 188 (674)
++++|+|+||||||||+++|+|.+.+. ..|.|.+||.++. +.+| +.+| +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999977432 2799999998732 2345 3567 889987655 110
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKE-LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLL-------LLDEP 260 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~il-------lLDEP 260 (674)
. .. +....++++++. + + ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 11 112245667766 5 4 57898885 59999999999999999999873 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCc
Q 044602 261 TSG---LDSTSANKLIQVLQKVAKAGR 284 (674)
Q Consensus 261 Tsg---LD~~~~~~i~~~L~~l~~~g~ 284 (674)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 345566778888766665553
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-15 Score=165.20 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=105.3
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------h--ccccEEEEccCCCCCCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------A--LKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~--~~~~igyv~Q~~~l~~~ 181 (674)
-+++|+++++|++++|+|+||||||||+++|+|++. +.+|+|.++|.+... . .++.++|++|+..+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 478999999999999999999999999999999874 458999998776531 1 25679999999888888
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-hCC-CEEEEeC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-VDP-SLLLLDE 259 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-~~P-~illLDE 259 (674)
+||++|+.++.... .+ . -+++..|+.+... .+-.--+|++.+++++. ..| .+||..+
T Consensus 362 ~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999999874311 00 0 0112222221111 12122357888888764 457 4666656
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecC
Q 044602 260 PTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQ 292 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 292 (674)
||+|.|.. +.++.+.+ .|.|.|++||-
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 88886544 33444443 48899999994
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=138.51 Aligned_cols=146 Identities=18% Similarity=0.285 Sum_probs=86.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHc--CCCC----CCccEEEECCEeC-Ch-h---ccccEEEEccCCCCCCCCCHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGG--RLTD----DVKGNITYNDIPY-NP-A---LKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G--~~~~----~~~G~I~~~g~~~-~~-~---~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+-+++|++++|+||||||||||++.|++ ...+ ...|.+++++.+. .. . ..+.+++.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 5699999999999999999999999998 3322 1356677766542 11 0 0111111111
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKR-TSIGYEIL--VDPSLLLLDEPTS 262 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~iA~aL~--~~P~illLDEPTs 262 (674)
++++.+.+ ....+..+... +.-+.+++ .+|+++++||||+
T Consensus 88 -------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 11221100 11244444332 33333444 4899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEecCCchH------------------HHhhcCEEEEEeCC
Q 044602 263 GLDST-------S-----ANKLIQVLQKVAKA-GRTVITTIHQPSSR------------------MFHMFDKLLLISEG 310 (674)
Q Consensus 263 gLD~~-------~-----~~~i~~~L~~l~~~-g~tvi~~~H~~~~~------------------i~~~~D~v~~L~~G 310 (674)
.+|+. . ...+++.|++++++ |.|||+++|..... +...||.+++|++|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34566667766654 99999999964321 22279999999865
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=145.11 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=67.5
Q ss_pred ccCccCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 230 FIKGISGGERKRT------SIGYEILVD-PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 230 ~~~~LSgGerqRv------~iA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. ++.+||++||++. +...||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCC
Confidence 3468999999988 567899999 99999999999999999999999999874 3579999999974 578999
Q ss_pred EEEEEe
Q 044602 303 KLLLIS 308 (674)
Q Consensus 303 ~v~~L~ 308 (674)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-15 Score=142.88 Aligned_cols=79 Identities=20% Similarity=0.114 Sum_probs=67.0
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhcc-ccEEEEccCCCCCCCCCHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALK-RRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~-~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+.+++++|+++++|++++|+||||||||||+|+|+|.+ + .+|+|.++|.++..... ++ +++|+..++ .+||.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 4467999999999999999999999999999999999988 4 58999999988743211 22 799998888 89999
Q ss_pred HHHHH
Q 044602 186 ETLVF 190 (674)
Q Consensus 186 e~l~~ 190 (674)
||+.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-16 Score=166.25 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=109.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~ 179 (674)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. +.+|+|.+.|.+... ..++++++++|++.++
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3569999999999999999999999999999999999774 458999999987632 2456799999998877
Q ss_pred CCC------------CHHHHHHHHH-----------------------------hhcCCCCCCHHHHH---HHHHHHHHH
Q 044602 180 PQL------------TVEETLVFAA-----------------------------FLRLPGNMNRQQKY---ARVQMILKE 215 (674)
Q Consensus 180 ~~l------------TV~e~l~~~~-----------------------------~~~~~~~~~~~~~~---~~v~~~l~~ 215 (674)
+.. ++.|.+.... .+..+. ...+.+ +.+.+....
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADM 197 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccE
Confidence 532 1233321100 000000 000000 011111111
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~ 281 (674)
+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+.+.|.++.+
T Consensus 198 vvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 198 IAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 222 222210 113589999999999999987 688887 999999999999999988653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-14 Score=151.32 Aligned_cols=143 Identities=10% Similarity=0.097 Sum_probs=99.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccc--cEEEEccCCCCCCCCCHHHHH
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKR--RIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~--~igyv~Q~~~l~~~lTV~e~l 188 (674)
.++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+... .+++ .+.+++|+..++|.+||+||+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 37899999999999999999999999874 458999999998742 1222 466999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...... . .+++..|+.+..+.. ..+|| .+++++..++++++||.+|.
T Consensus 205 ~~~~~~~~d----------~--vliDtaG~~~~~~~l-----~~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGID----------V--VLIDTAGRSETNRNL-----MDEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCS----------E--EEEEECCSCCTTTCH-----HHHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHhccch----------h--hHHhhccchhHHHHH-----HHHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 876321100 0 012222332222211 12343 48899998888888885554
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCC
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQP 293 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~ 293 (674)
..+++.++.+.+ .+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 355566666654 489999999964
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-14 Score=151.96 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=89.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh---hcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF---LRL 196 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~---~~~ 196 (674)
+++.+++|.||||||||||.+.|++.+.+ .| . . ++.+.+|+||+.+++. ++++|+.++.. +..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 47899999999999999999999987732 22 0 1 4456677999999986 99999988631 000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccc------cccCCccCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHT------RVGGGFIKGISGGERKRTSIG--YEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~------~vg~~~~~~LSgGerqRv~iA--~aL~~~P~illLDEPTsgLD~~~ 268 (674)
..+.+.....+...+.++.+.- ..+| .+. .+.+.+||||+||+++| +++ +|+|||+||||+++|+..
T Consensus 95 ~~g~p~a~d~~~l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGTHDMKLLQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC--------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hccCcchhHHHHHHHHHHHhhc--cCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0011111123455666776632 2221 111 23468999999999997 555 999999999999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-14 Score=156.26 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=99.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
-++++++++.|+.++|+|+|||||||||++|+|.. + .+.+.+.. .+...+|+|.+++. ..+++.|+.-+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~-~------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH-P------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC-C------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC-c------cccCcccc-eecceeeEEEecCc--ceEEEEeccccc
Confidence 48999999999999999999999999999999864 2 23333322 12334666665530 001111110000
Q ss_pred HhhcCCCCCCHHH--HHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 192 AFLRLPGNMNRQQ--KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 192 ~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
........+.... ..++++.++..+++. +. ...++|+||+||+.+|++|+.+|.++++ +.+|...+
T Consensus 217 ~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 217 EGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 0000000111110 011122233333433 22 2347999999999999999999999999 99999877
Q ss_pred HHHHHHHHHH-HhCCcEEEEEecCCchHHHhhcCE
Q 044602 270 NKLIQVLQKV-AKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 270 ~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
..++.+++. .+.|.+++.+|......+.++++.
T Consensus 285 -~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 285 -EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp -HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 444545444 345777776654433345555443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-13 Score=125.89 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=72.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--EEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G--~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+|+++ +|+.++|+||||+|||||++++++...+ +| .+++++.+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~----------------~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPL----------------T------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCC----------------C-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhH----------------H-------
Confidence 467777 8999999999999999999999986633 45 34433322110 0
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 1246799999999998 6666
Q ss_pred HHHHHHHHHHHHHhCCcE-EEEEecCCch
Q 044602 268 SANKLIQVLQKVAKAGRT-VITTIHQPSS 295 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~t-vi~~~H~~~~ 295 (674)
.+..+.+.++++.++|++ +|+++|.+..
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 688999999998877888 8889886543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=142.71 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=68.4
Q ss_pred CccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 58999999999999999999999999999876689999999995 357789999999
Q ss_pred e
Q 044602 308 S 308 (674)
Q Consensus 308 ~ 308 (674)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-13 Score=129.62 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=43.3
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 248 ILVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 248 L~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
.+.+|++|+||||++ ++|+..+..+.+.+++..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999996 9999999999999998877899999999997653
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-13 Score=140.88 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=76.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 044602 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNR 202 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 202 (674)
+.|.||||+|||||+++|++.+..+..|++.++|.+... ..+..+++++|.+.+.-..+ + .+ ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Ccch
Confidence 899999999999999999994334568999999987642 23567889988765321111 0 00 0011
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 203 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
. .+++.++.+......+..+ .+|| +..+|+++++|||++ ||+.++..+.+.|++.. .
T Consensus 107 ~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~ 163 (354)
T 1sxj_E 107 I----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-K 163 (354)
T ss_dssp H----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-T
T ss_pred H----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-C
Confidence 1 2333444332111111111 3566 788999999999999 99999999999998864 4
Q ss_pred CcEEEEEecCCch
Q 044602 283 GRTVITTIHQPSS 295 (674)
Q Consensus 283 g~tvi~~~H~~~~ 295 (674)
+.++|+++|++..
T Consensus 164 ~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 164 NIRLIMVCDSMSP 176 (354)
T ss_dssp TEEEEEEESCSCS
T ss_pred CCEEEEEeCCHHH
Confidence 7899999999764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-13 Score=144.41 Aligned_cols=146 Identities=17% Similarity=0.227 Sum_probs=88.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHH--HcCCCCCC-----ccEEEECCEeC-Ch-h---ccccEEEEccCCCCCCCCCH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIV--GGRLTDDV-----KGNITYNDIPY-NP-A---LKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L--~G~~~~~~-----~G~I~~~g~~~-~~-~---~~~~igyv~Q~~~l~~~lTV 184 (674)
+-+++|++++|+||||||||||++.| .+.. ++. .+.+++++.+. .. . +.+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQI-PLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-CcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----------
Confidence 67999999999999999999999954 4544 322 23666666542 11 0 0111111111
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCH-HHHHHHHHHHHHh--hCCCEEEEeCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG-GERKRTSIGYEIL--VDPSLLLLDEPT 261 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~iA~aL~--~~P~illLDEPT 261 (674)
++++.+- +. +..++ .+.+.+.-+.+++ .+|+++++||||
T Consensus 242 --------------------------~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 242 --------------------------DALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp --------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred --------------------------hHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1111110 10 11222 2233333333433 469999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEecCCc------------------hHHHhhcCEEEEEeCC
Q 044602 262 SGLDSTSA------------NKLIQVLQKVAKA-GRTVITTIHQPS------------------SRMFHMFDKLLLISEG 310 (674)
Q Consensus 262 sgLD~~~~------------~~i~~~L~~l~~~-g~tvi~~~H~~~------------------~~i~~~~D~v~~L~~G 310 (674)
+.+|+... ..+++.|++++++ |.|||+++|... ..+...+|.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 5678888888865 999999999821 2246678999999876
Q ss_pred E
Q 044602 311 Y 311 (674)
Q Consensus 311 ~ 311 (674)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-14 Score=147.13 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE---CCEeCCh---hcc-ccEEEEccCCCCC-----CCCCHHH
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNP---ALK-RRIGFVTQDDVLL-----PQLTVEE 186 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~---~g~~~~~---~~~-~~igyv~Q~~~l~-----~~lTV~e 186 (674)
+.+|++++|+||||||||||+|+|+ .. .+.+|+|.+ +|++... ..+ +.+|||+|++.+. +.+|+ |
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 3469999999999999999999999 76 446899999 8987653 122 3689999998553 78899 8
Q ss_pred HH--HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHH
Q 044602 187 TL--VFAA----FLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYE 247 (674)
Q Consensus 187 ~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~a 247 (674)
|+ .|+. .++........+...+++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4541 0111111112233457899999999986 555543 4799988999999873
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-15 Score=163.82 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=99.2
Q ss_pred hcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEE
Q 044602 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIG 170 (674)
Q Consensus 99 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~ig 170 (674)
..++++.++...+|+++ + .++|++++|+|||||||||||++|+|.+.+ .+|+|.++|.++.. .+++.++
T Consensus 146 l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccC
Confidence 34445555555689998 5 389999999999999999999999998754 48999999887631 1334566
Q ss_pred EEc---------cCCCC--CCC----CCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcc
Q 044602 171 FVT---------QDDVL--LPQ----LTVEETLVFAAFLRL----PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFI 231 (674)
Q Consensus 171 yv~---------Q~~~l--~~~----lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 231 (674)
+.+ |++.. ++. .|+.+++.++..-.. ....+. . .+.+.|..+|+++.. . +
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~-~~i~rL~~lgl~~~~--~-----~ 291 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---V-GAVTRLRDMGIEPFL--I-----S 291 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---H-HHHHHHHHHTCCHHH--H-----H
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---H-HHHHHHHHcCCcHHH--H-----H
Confidence 655 88754 343 589999987642110 000111 1 222346778887543 2 2
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
..|||||+|| ||++|+.+|++..
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccC
Confidence 4799999999 9999999999876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-14 Score=143.53 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=95.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
.++|++++|+||||||||||+++|+|.+.+. | ..+|+|++++..++. +..+++........+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~ 81 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPE 81 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCCc
Confidence 5799999999999999999999999987421 2 235666666554432 2222221000000111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG-YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA-~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~ 277 (674)
.... ....+.+..+...+..+.++.+... .+|+||+||+++| ++++.++.++++|||.- .
T Consensus 82 ~~~~----~~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~ 142 (208)
T 3c8u_A 82 TFDF----EGFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------R 142 (208)
T ss_dssp GBCH----HHHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------G
T ss_pred hhhH----HHHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCchh--------------H
Confidence 1111 1223333333222223334443333 5899999999998 78888888888888731 1
Q ss_pred HHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHH
Q 044602 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
++.+.--.+|++.++....+.+...|. +..|+ +.+++.+.+.
T Consensus 143 ~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 143 DLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 112222367777777655566666662 34554 6667765554
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.9e-15 Score=164.30 Aligned_cols=177 Identities=18% Similarity=0.123 Sum_probs=110.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe-CChhccccEEEEccCCCCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP-YNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~-~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
..+++++++.+++|+.++|+|||||||||||++|+|.+ ++.+|.|.++|.+ +...-.+.++++.|........|..++
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 45789999999999999999999999999999999988 4568999999865 321123456666665442223455555
Q ss_pred HHHHHhhcCC----CCCCHHHHH------------------HHHHHHHHHcCCC-----c----cccccccCCccCccCH
Q 044602 188 LVFAAFLRLP----GNMNRQQKY------------------ARVQMILKELGLE-----R----CRHTRVGGGFIKGISG 236 (674)
Q Consensus 188 l~~~~~~~~~----~~~~~~~~~------------------~~v~~~l~~lgL~-----~----~~~~~vg~~~~~~LSg 236 (674)
+.-..+.+.. .++...+.. ..+.++++.+... . ..+..+ .....+||
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s~ 403 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVRG 403 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEESS
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEeC
Confidence 4433221100 011111110 0123333433221 1 111100 11235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EecCCchHHHhhc
Q 044602 237 GERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT--TIHQPSSRMFHMF 301 (674)
Q Consensus 237 GerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~~~~~i~~~~ 301 (674)
|||||.+++. + | |+|||+.+...+++.+.++.++|+|+++ ++|+.. ++.+.|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999987751 2 7 9999998887777777777666888875 889865 355555
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-16 Score=152.19 Aligned_cols=151 Identities=19% Similarity=0.286 Sum_probs=87.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC------------CCCccEEEECCEeCC---h-hccccEEEEccCCCCCCCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT------------DDVKGNITYNDIPYN---P-ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~------------~~~~G~I~~~g~~~~---~-~~~~~igyv~Q~~~l~~~lT 183 (674)
++|++++|+||||||||||+|+|+|.++ ++..|+ ++|.++. . .+++.+ .|+..++.. +
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~-~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHA-E 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEE-E
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeee-e
Confidence 5899999999999999999999998653 134565 3665432 1 233332 454444332 4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK----RTSIGY-EILVDPSLLLLD 258 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq----Rv~iA~-aL~~~P~illLD 258 (674)
+.+|+ ++ .++ +.++++++.-. ....+. + + .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~----~~i~~~~~~~~-~~~~~~--~------~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSK----EAVRAVQAMNR-ICVLDV--D------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEH----HHHHHHHHTTC-EEEEEC--C------H-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCH----HHHHHHHHcCC-cEEEEC--C------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 44444 22 122 22334443210 000010 0 0 01111 12 455 678888888999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
|+|+++|..+...|.+.|++..++ +...|.+ ..+|+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999999887653 2334621 46899988764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-14 Score=156.97 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=118.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCC-----------CCCCccEEEECCEeCCh-----hccccE---EEEccCCCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRL-----------TDDVKGNITYNDIPYNP-----ALKRRI---GFVTQDDVL 178 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-----------~~~~~G~I~~~g~~~~~-----~~~~~i---gyv~Q~~~l 178 (674)
.+++|+.++|+|+||||||||+|+|+|.. ..+..|.|.++|..+.. .-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 55789999999999999999999999931 13568999998854321 112223 467788888
Q ss_pred CCCCCHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC--CE
Q 044602 179 LPQLTVEETL--VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP--SL 254 (674)
Q Consensus 179 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P--~i 254 (674)
.+..+..|++ .|...++. ++.++..++..+ +.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 8887776655 33332221 111111121111 121 22456543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEecCCchHHHhhcCEEE-EEeCC-EEEEecChhH
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKV-AKAGRTVITTIHQPSSRMFHMFDKLL-LISEG-YPVYYGKARE 320 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 320 (674)
+++|||+.++|+......++.++++ ++.|.|++ +|+.. ++.++||++. +|++| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999988 66677764 99864 5789999999 99999 8888776543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-13 Score=144.87 Aligned_cols=179 Identities=19% Similarity=0.198 Sum_probs=112.8
Q ss_pred ccccceeeeEEEEeCC-------eEEEEEcCCCCcHHHHHHHHHcCCC---CCCccEEEECCEeCCh---hc-cccEEEE
Q 044602 107 DYKHILKGITGSICPG-------EILALMGPSGSGKTTLLKIVGGRLT---DDVKGNITYNDIPYNP---AL-KRRIGFV 172 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~G-------e~~ailG~sGsGKSTLl~~L~G~~~---~~~~G~I~~~g~~~~~---~~-~~~igyv 172 (674)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|.+. .+.+|.+..++.++.. .. ++.++++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456889999999877 8999999999999999999999752 1246666666554422 12 4579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGN-MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
.|.+.+.+ ++.|++..........- .......+.++..++.++|.. ..+.. ..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce------
Confidence 99887765 78888854432211000 011122234555555566544 44444 37999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHH
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
.+||+.+..++.+.|++.++. + +.|++. .+..++++ ..|++..+....
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~----------~~G~~R~a~~ll 223 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR----------SRGTPRIAIRLT 223 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT----------STTCHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh----------cCCChHHHHHHH
Confidence 788999999999999988753 4 246643 34455543 246776665443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-13 Score=140.68 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=70.5
Q ss_pred ccceeeeEEEE-------------------eCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEE---CCEeCChhc
Q 044602 109 KHILKGITGSI-------------------CPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITY---NDIPYNPAL 165 (674)
Q Consensus 109 ~~iL~~vs~~i-------------------~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~---~g~~~~~~~ 165 (674)
.++++++|+.+ ++|+++||+||||||||||+++|+|++.. +.+|+|.+ ||.......
T Consensus 48 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~ 127 (308)
T 1sq5_A 48 LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHH
Confidence 35778888877 89999999999999999999999997641 46899999 888765444
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 044602 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195 (674)
Q Consensus 166 ~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~ 195 (674)
++.+|++ |+..+++.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 5668888 8777788899999998876543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-12 Score=134.33 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=69.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE---CCEeCCh---hc-cccEEEEccCCC-------------
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNP---AL-KRRIGFVTQDDV------------- 177 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~---~g~~~~~---~~-~~~igyv~Q~~~------------- 177 (674)
++.+|++++|+||||||||||+|+|+|+.. +.+|+|.+ +|+++.. .. .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 455799999999999999999999999874 45899999 8987653 12 236899999974
Q ss_pred ---CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCH
Q 044602 178 ---LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISG 236 (674)
Q Consensus 178 ---l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 236 (674)
+||++|+ ||+.|+. +. . ..+...+++++|+.+||+ +..+.. ++.||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY-----VKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH-----HHHHHH
Confidence 5889999 9998753 11 1 122345788999999995 555544 335664
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-14 Score=149.42 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=91.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCC-CCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQ 181 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~ 181 (674)
....+++++++.+++| ++|.||||||||||+++|+|... .|.|.++|.++.. ...+.+++++|+. ...|.
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 3456899999999999 99999999999999999999763 2799999987642 2345678888874 45666
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+++.|++......+ .. .... .+.+..++. ...|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 67777765432111 00 0000 012222332 3479999999999999999999985 9986
Q ss_pred C
Q 044602 262 S 262 (674)
Q Consensus 262 s 262 (674)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-12 Score=131.87 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=68.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE---CCEeCCh--hc-cccEEEEccCCCCCC----CCCHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNP--AL-KRRIGFVTQDDVLLP----QLTVEE 186 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~---~g~~~~~--~~-~~~igyv~Q~~~l~~----~lTV~e 186 (674)
+++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+.... .+ +..+||++|.+.+.+ .+|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4567899999999999999999999999874 45899998 8876642 22 223799999987655 6899 8
Q ss_pred HHH--HHH------hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHH
Q 044602 187 TLV--FAA------FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKR 241 (674)
Q Consensus 187 ~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 241 (674)
++. |.. .++........+....++++++.++|.+...... ..++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 883 331 1111111111223356889999999976433222 2577788773
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-11 Score=124.36 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=45.3
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEecCCchH-------HHhhcCEEEEEeC
Q 044602 250 VDPSLLLLDEPTSGL--DSTSANKLIQVLQKVA-KAGRTVITTIHQPSSR-------MFHMFDKLLLISE 309 (674)
Q Consensus 250 ~~P~illLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~~L~~ 309 (674)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666655 4689999999986531 4577899999974
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=119.49 Aligned_cols=115 Identities=15% Similarity=0.239 Sum_probs=81.9
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF 193 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~ 193 (674)
.+++..++|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+.... ...|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~------------------~a~e------- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRA------------------AAIE------- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCH------------------HHHH-------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccH------------------HHHH-------
Confidence 34556789999999999999999999999997743 367888776653210 0011
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 194 LRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRT---SIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
....+.+.+|++. + ...|||+.+++ ++++++..+|+++++|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 2233445556542 1 25789999999 99999999999999999974 44556
Q ss_pred HHHHHHHHHHh
Q 044602 271 KLIQVLQKVAK 281 (674)
Q Consensus 271 ~i~~~L~~l~~ 281 (674)
.+++.|+++.+
T Consensus 203 ~l~~eL~~l~~ 213 (306)
T 1vma_A 203 NLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.5e-10 Score=122.33 Aligned_cols=179 Identities=12% Similarity=0.172 Sum_probs=111.3
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEEECCEeCCh-hcccc-EEEEccCCCCCCCCCHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NITYNDIPYNP-ALKRR-IGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~~~g~~~~~-~~~~~-igyv~Q~~~l~~~lTV~e 186 (674)
..|+++.+-+++|+++.|.|+||+|||||+..+++.... ..| .|.+.+.+.+. .+.++ .+...+ ... +
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 468899888999999999999999999999999875422 123 44444333321 11110 000000 000 0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDEPTSGL 264 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDEPTsgL 264 (674)
.+ +. ..+...+ ..++.+.++.++..+..-.. ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 NL------RT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HH------HT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HH------hc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 11 10 1123222 33555566655433322111 1369999987 5667776 689999999999977
Q ss_pred CH--------HHHHHHHHHHHHHHhC-CcEEEEEec---------C--Cc-------hHHHhhcCEEEEEeCCEE
Q 044602 265 DS--------TSANKLIQVLQKVAKA-GRTVITTIH---------Q--PS-------SRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 265 D~--------~~~~~i~~~L~~l~~~-g~tvi~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 312 (674)
++ .....+.+.|+.++++ |.+||+++| + |. ..+.+.+|.|++|++++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 2346777888888865 999999999 2 32 136778999999987653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=112.36 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=83.2
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAA 192 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~ 192 (674)
++++++ +|++++++|+||+||||++..|+|.+.+ ..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~-----------------~~-~ql---- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPA-----------------AR-EQL---- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHH-----------------HH-HHH----
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHh-----------------HH-HHH----
Confidence 678888 9999999999999999999999997743 4788888776643110 00 000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHH
Q 044602 193 FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP-TSGLDSTSANK 271 (674)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP-TsgLD~~~~~~ 271 (674)
..+.+..|++..... .+-.-.+.+|.+|+++...+++++|+||| ++++|......
T Consensus 146 -----------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 -----------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp -----------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred -----------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 012233455432110 01234456789999988899999999999 99999888888
Q ss_pred HHHHHHHH
Q 044602 272 LIQVLQKV 279 (674)
Q Consensus 272 i~~~L~~l 279 (674)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 77776654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=116.22 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=88.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL 196 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~ 196 (674)
+-+++|+++.|.||||||||||+..++...... .| .+.|+.-+...- +. ++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~---------------~vlyi~~E~~~~------~~--~a----- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GG---------------IAAFIDAEHALD------PE--YA----- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TC---------------CEEEEESSCCCC------HH--HH-----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CC---------------eEEEEECCCCcC------HH--HH-----
Confidence 368999999999999999999988887533111 12 244444332110 00 01
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD--PSLLLLDEPTSGL---------- 264 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~--P~illLDEPTsgL---------- 264 (674)
+.+|+... +-.+- ...+. .|-+.++++++.+ |+++++||+++.+
T Consensus 107 -----------------~~lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 -----------------KKLGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -----------------HHTTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -----------------HHcCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 11222110 00111 11233 3446678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HhCCcEEEEEecCCch---------------HHHhhcCEEEEEeCCEEEEecC
Q 044602 265 DS---TSANKLIQVLQKV----AKAGRTVITTIHQPSS---------------RMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 265 D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
|+ ..++.+.+.++++ .+.|.|||+++|.... .+...+|.++.+++++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3459999999996431 2567899999998887765554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-10 Score=130.67 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=101.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc-CCCCCCccEEEECCEeCCh-hccccEEEEccCCCCCCCC--CHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQL--TVEETL 188 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G-~~~~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~l--TV~e~l 188 (674)
+.+++++.++..++|.|++||||||+++.|.. ++.....|++.+.+.+.+. ++. ....+|++ +|.++.
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTDM 229 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCSH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh--------hhccCCcccceeecCH
Confidence 35788889999999999999999999998864 3333335778777766542 111 10111221 122222
Q ss_pred HHHHh-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCCccCccCHHHHHHH----------HHHHHHhhCCC-E
Q 044602 189 VFAAF-LRLPGNMNRQQKYARVQMILKELGLERCRHT--RVGGGFIKGISGGERKRT----------SIGYEILVDPS-L 254 (674)
Q Consensus 189 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSgGerqRv----------~iA~aL~~~P~-i 254 (674)
..+.. ++ ...++.++| .++++..|+.+..+. .+. ..+|+||+||. .+++++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 22111 11 112344444 377888888764332 121 25788888753 35566777898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC----CcEEEEEecCCc
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAKA----GRTVITTIHQPS 294 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~ 294 (674)
+++||+++-+|.. ...+.+.+.++++. |.++|++||+|+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988843 34566666666542 779999999997
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-10 Score=110.03 Aligned_cols=139 Identities=20% Similarity=0.187 Sum_probs=75.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----C------CccEEEECCEeCCh------hccccEEEEccCCC-CCCCCCHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTD----D------VKGNITYNDIPYNP------ALKRRIGFVTQDDV-LLPQLTVEE 186 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~----~------~~G~I~~~g~~~~~------~~~~~igyv~Q~~~-l~~~lTV~e 186 (674)
.++|+|+||||||||++.++|...+ + .+|+|.++|+++.- ...+..++++|... ....++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999997532 1 47899999976421 11122222222100 000011111
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHH---HcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILK---ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
.. .. ...+.+..+++ ...-.+..--.+++.. +|..-..+...+|++++.+|+++++| ||+
T Consensus 111 ~~------------~~-~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~--Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KH-LTYENVERWLKELRDHADSNIVIMLVGNKS--DLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECG--GGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECc--ccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 00 00011111111 1100111111122211 23222234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 044602 264 LDSTSANKLIQVLQKV 279 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l 279 (674)
+|..+..++.+.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-13 Score=136.85 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=84.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~l 182 (674)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ..++.+++++|+.. ..+.+
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 346899999999999 89999999999999999999762 6899999876422 22345777888743 56677
Q ss_pred CHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 183 TVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
++.|++......+... .....+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432111000 000111122222222 25899999999999999999876
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-09 Score=111.69 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
++|++++++||||+||||+++.|++.+.+ .+| +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKH--------------KKIAFITTDTY---RIAAVEQLKTYA------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC--------------CCEEEEECCCS---STTHHHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC--------------CEEEEEecCcc---cchHHHHHHHHH-------
Confidence 57999999999999999999999987632 245 35777777652 235666554322
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l 279 (674)
+..|++... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 --------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 --------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp --------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred --------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 122332110 1122 33455555 45999999999 9999987765555544333
Q ss_pred H---hCCcEEEE-EecCCchHHHhhcCEEEEEeCCEEEEe
Q 044602 280 A---KAGRTVIT-TIHQPSSRMFHMFDKLLLISEGYPVYY 315 (674)
Q Consensus 280 ~---~~g~tvi~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 315 (674)
. ..+.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 209 ~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 2 11334444 37774 357777787666666777654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-11 Score=137.70 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC----------
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD---------- 176 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~---------- 176 (674)
+...+++++++.+++|+.++|+||||+|||||+++|++.+.+...|.+.+++.+.+. ....+++++|..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHH
Confidence 345689999999999999999999999999999999998865544889998877643 345688888742
Q ss_pred ------------CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHH
Q 044602 177 ------------VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI 244 (674)
Q Consensus 177 ------------~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 244 (674)
..+..+++.+|+........+...-. +...... +.+|..+..... ..++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~~~-----~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDPFQ-----SGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEechhh-----cCCccccccccccC
Confidence 11112222222211000000000000 0000011 112211111111 13699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 245 A~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
++....++.+|++||... |++.....+.+.|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 898888888777754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-10 Score=112.97 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=47.9
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
|+++++|++++|+||||||||||+++|+|.. + .+.+++..... ..++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 5678899999999999999999999999975 3 46677655432 235578999998766655555444
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-12 Score=133.35 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=85.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCC-CCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~lT 183 (674)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ..++.+++++|+. ...+.++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 46899999999999 99999999999999999998762 6899998876422 2234567788874 3566677
Q ss_pred HHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 184 VEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 184 V~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
+.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 888884332111000 001112222222222 25889999999999999999986 4543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=9.5e-10 Score=122.02 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=47.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
..+|+|+|+++++ |+++|+|||||||||||++|+|+++ +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence 4589999999999 9999999999999999999999874 46999999998764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-10 Score=111.02 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=22.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-cCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVG-GRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G~~ 146 (674)
.+..+++|+++++|++++|+||||||||||+++|+ |+.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35789999999999999999999999999999999 976
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-08 Score=104.70 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-EECCEeCC-hhccccEEEEccCCCCCCCCCHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-TYNDIPYN-PALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-~~~g~~~~-~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+-+++|+++.|.||||||||||+..+++.... ..|.+ ++++.... ....+++|+.+|+..+....++.+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence 36899999999999999999999999975422 24544 55554432 222334555555433333334444
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-07 Score=105.87 Aligned_cols=113 Identities=25% Similarity=0.370 Sum_probs=76.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
..++++++.+++| +.|.||+|+|||||++++++....+ -+.+++.+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~----------------------------- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSD----------------------------- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGG-----------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHH-----------------------------
Confidence 3567778888888 8899999999999999999843111 01110000
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC---------
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP--------- 260 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP--------- 260 (674)
..+..+| .|++++|-.+++|....|.||++||+
T Consensus 85 -------------------------------~~~~~~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 85 -------------------------------FVELFVG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp -------------------------------TTTCCTT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred -------------------------------HHHHHhc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 0000111 26788888999999999999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEecCCc
Q 044602 261 -TSGLDSTSANKLIQVLQKVA----KAGRTVITTIHQPS 294 (674)
Q Consensus 261 -TsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 294 (674)
++|.|......+.++|..+- +.+..||.+||++.
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 44777777777777777664 24778999999974
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-09 Score=106.85 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=40.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------------hccccEEEEccC
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------------ALKRRIGFVTQD 175 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------------~~~~~igyv~Q~ 175 (674)
++++.+ ++++|+|||||||||||++|+|.+.+ .+|+|.++|.++.. ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 89999999999999999999998854 58999999987621 135679999984
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-08 Score=97.65 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044602 242 TSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280 (674)
Q Consensus 242 v~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~ 280 (674)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998886643
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-10 Score=124.95 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=84.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCC-CCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV-LLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~-l~~~lTV~e~ 187 (674)
..+|+++|+.+++|++++|.||||||||||+++|+|.. +|++..-+.+- ...+..+|+++|... ++...+...+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999843 67776522111 122224667777653 2333332221
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cc--CCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKE---LGLER-CR---HTR--VG--GGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~--vg--~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+. .+.... ........+.+.++- +.+.. .. +.. .| +.....+++|++||+..+.+++.+|++++
T Consensus 231 ~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli 305 (377)
T 1svm_A 231 ES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH 305 (377)
T ss_dssp TT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH
T ss_pred HH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE
Confidence 10 000000 010011223333331 10110 00 000 00 11234689999999998888889999887
Q ss_pred -EeCCCC
Q 044602 257 -LDEPTS 262 (674)
Q Consensus 257 -LDEPTs 262 (674)
||+|+.
T Consensus 306 yLd~~~~ 312 (377)
T 1svm_A 306 CLERSEF 312 (377)
T ss_dssp HHHTCTH
T ss_pred EEeCCHH
Confidence 999986
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.8e-09 Score=102.91 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=41.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLL 179 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~ 179 (674)
+..+-.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.. ..+...|+++|+....
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 344444667899999999999999999999999854 889999877642 1122457777764333
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-07 Score=101.96 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=88.7
Q ss_pred eCCeE-EEEEcCCCCcHHHHHHHHHcCCCC----------CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH---
Q 044602 120 CPGEI-LALMGPSGSGKTTLLKIVGGRLTD----------DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE--- 185 (674)
Q Consensus 120 ~~Ge~-~ailG~sGsGKSTLl~~L~G~~~~----------~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~--- 185 (674)
+.|-. ++|+|++|||||||+|.|+|.... +..|.|.++|.++. +....|++.|.+. ..|.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHH
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHH
Confidence 34444 999999999999999999996531 35689999886542 2233455544221 1121
Q ss_pred HHHHHHHh--h--c-CC-CCCC--HHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH----HHH-hhCC
Q 044602 186 ETLVFAAF--L--R-LP-GNMN--RQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG----YEI-LVDP 252 (674)
Q Consensus 186 e~l~~~~~--~--~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA----~aL-~~~P 252 (674)
..+..... . . .. .... ..+..+.+.++++.+++.+..--.|++. +..+|+|++||+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11111000 0 0 00 0111 1233345677888887755432223322 235788888988887 555 3344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAK 281 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~ 281 (674)
++ +|+|++|......+.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 54 89999999999999999987654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8.8e-09 Score=101.02 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=43.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE--EECCEeCCh
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI--TYNDIPYNP 163 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I--~~~g~~~~~ 163 (674)
....+..++..++|++++|+||||||||||+++|++++. ..|.+ +++|.++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhhh
Confidence 445667777778999999999999999999999999773 46887 888876543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-07 Score=97.26 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=84.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--------~g--------~~Vl~fSl------Ems~~q--- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--------DD--------RGVAVFSL------EMSAEQ--- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--------TT--------CEEEEEES------SSCHHH---
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--------cC--------CeEEEEeC------CCCHHH---
Confidence 357777778999999999999999999999888753211 11 22444432 123332
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
...++......+++.+..+ ..||.+|++|++.|...+.++++++.|+|... .
T Consensus 89 ---------------l~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 89 ---------------LALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ---------------HHHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ---------------HHHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 2222222222222222211 26999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHh-C-CcEEEEEec
Q 044602 270 NKLIQVLQKVAK-A-GRTVITTIH 291 (674)
Q Consensus 270 ~~i~~~L~~l~~-~-g~tvi~~~H 291 (674)
..+...++++.+ . |..+|++-|
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366666776665 3 677777743
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-07 Score=104.50 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=57.7
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ecCCchHHHhhcCEE
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITT-IHQPSSRMFHMFDKL 304 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~D~v 304 (674)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++++++ ||++ ..+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCC
Confidence 3589999999999999999999999999996 999887777777776654446777775 8875 4566777753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-07 Score=89.35 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++++|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999998733
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.8e-08 Score=97.28 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=47.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCccEEE--------ECCEeCCh-----hccccEEEEcc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVG---GRLTDDVKGNIT--------YNDIPYNP-----ALKRRIGFVTQ 174 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~---G~~~~~~~G~I~--------~~g~~~~~-----~~~~~igyv~Q 174 (674)
++++.+ ++|++++|+|||||||||++++|+ |.. ..++|.|. .+|.++.. .+++.+++++|
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 455544 789999999999999999999999 865 34589998 88887742 46678999997
Q ss_pred CC
Q 044602 175 DD 176 (674)
Q Consensus 175 ~~ 176 (674)
++
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 54
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-07 Score=96.70 Aligned_cols=52 Identities=33% Similarity=0.450 Sum_probs=35.7
Q ss_pred eEEEEeE-EEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeC---CeEEEEEcCCCCcHHHHHHHHHc
Q 044602 69 FLKFEDV-EYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICP---GEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 69 ~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|+ +++|. +.+++|+|+|+++++ |+.++|+|++||||||+.++|++
T Consensus 17 ~l~~~~~~~~~~~--------------------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFD--------------------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -----------------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEec--------------------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5899999 88662 125699999999999 99999999999999999999998
Q ss_pred CC
Q 044602 145 RL 146 (674)
Q Consensus 145 ~~ 146 (674)
.+
T Consensus 71 ~l 72 (250)
T 3nwj_A 71 SL 72 (250)
T ss_dssp HH
T ss_pred hc
Confidence 55
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.18 E-value=5.9e-07 Score=86.09 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.1
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999 9999999999999999999987643
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.8e-09 Score=116.58 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=85.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lT 183 (674)
..+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++.. ...+.+..++|... ..|.+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 45789999999999 89999999999999999998652 6889999877532 12234556677643 445555
Q ss_pred HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55655322111100 00112233333444432 4778888888888899999987 898875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.2e-08 Score=110.13 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=36.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEE-ECCEeC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NIT-YNDIPY 161 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~-~~g~~~ 161 (674)
.+++|++++|+|+||||||||+++|+|++.+ .+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHH
Confidence 5789999999999999999999999998754 355 784 888654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-06 Score=92.67 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=49.3
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe--cCCc
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLD-EPTSGLDSTSANKLIQVLQKVAKAGRTVITTI--HQPS 294 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 294 (674)
..+|+||+|++. +.+...++-++++| +|++++|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 368999999887 55656778889999 99999999998888888777644 77888888 7754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-07 Score=97.04 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=58.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc-----cccEEEE-ccCCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL-----KRRIGFV-TQDDV 177 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~-----~~~igyv-~Q~~~ 177 (674)
++++|+.+++|++++|+|+||+||||++..|++.+.+ ..|+|.+.+.+... .+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4789999999999999999999999999999997743 47899998877632 12 5578999 77654
Q ss_pred CCCCCCHHHHHH
Q 044602 178 LLPQLTVEETLV 189 (674)
Q Consensus 178 l~~~lTV~e~l~ 189 (674)
..|..++.+++.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444434445443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-07 Score=87.25 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEEC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN 157 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~ 157 (674)
.+|++++|+||||||||||++.|++..++...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 36899999999999999999999997643345666543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.1e-06 Score=87.81 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=82.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCC----hhccccEEEEccCCC-CCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYN----PALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~----~~~~~~igyv~Q~~~-l~~~l 182 (674)
..+|++++++++ .++|+|++|||||||++.|+|..- +..+|.+.-....+. ..-.+..+...+.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 899999999999999999999432 333555433222211 001123333333221 11110
Q ss_pred -CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--------------------ccccccccCCc---cCccCHHH
Q 044602 183 -TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--------------------RCRHTRVGGGF---IKGISGGE 238 (674)
Q Consensus 183 -TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~---~~~LSgGe 238 (674)
.+.+.+. ++.....|-. ...|++ |-.. ..+-++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 1111111100 011221 1000 11356788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEec
Q 044602 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG-RTVITTIH 291 (674)
Q Consensus 239 rqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 291 (674)
+++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| +++++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999877774334445443 44566666665555 56666665
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=6e-07 Score=87.92 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQ 203 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~ 203 (674)
+++|+|||||||||+.+.|++ + |...+++-++. +... + ++ .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~~---~~~~----~-----~~-------------------~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVVA---REVV----A-----KD-------------------S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHHH---HHTT----C-----SS-------------------C--
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHHH---HHHc----c-----CC-------------------h--
Confidence 689999999999999999997 3 33333322110 0000 0 00 0
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 044602 204 QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283 (674)
Q Consensus 204 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g 283 (674)
....++.+.+|... -.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.+++. .+
T Consensus 45 ---~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~ 105 (206)
T 1jjv_A 45 ---PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TA 105 (206)
T ss_dssp ---HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CS
T ss_pred ---HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CC
Confidence 12334555555321 13678889999998888887644332 3345555555555444332 35
Q ss_pred cEEEEEecCCchH-HHhhcCEEEEEe
Q 044602 284 RTVITTIHQPSSR-MFHMFDKLLLIS 308 (674)
Q Consensus 284 ~tvi~~~H~~~~~-i~~~~D~v~~L~ 308 (674)
.++|+.+|...+. ....||.+++++
T Consensus 106 ~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 106 PYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CEEEEEechhhhcCcHhhCCEEEEEE
Confidence 6888888875432 256788888874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=85.17 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=35.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEecCCc
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK---AGRTVITTIHQPS 294 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 294 (674)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876665 5789999999863
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-06 Score=84.16 Aligned_cols=38 Identities=26% Similarity=0.142 Sum_probs=24.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999755
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5.1e-06 Score=91.53 Aligned_cols=96 Identities=10% Similarity=0.153 Sum_probs=61.0
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE-EeCCEEEEecChhH--HHHH-
Q 044602 250 VDPSLLLLDEPTSGLDS-TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL-ISEGYPVYYGKARE--SMEY- 324 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~~--~~~~- 324 (674)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|++..++..+.+++.- +..|.++..++++. ..+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887765 6778888999888778999999999865432222233322 45577766665532 2232
Q ss_pred ---HHhCCCCCCCCCChhHHHHHhhc
Q 044602 325 ---FSSLGFIPEIAMNPAEFLLDLAT 347 (674)
Q Consensus 325 ---f~~~g~~~~~~~npad~~~~~~~ 347 (674)
.+..|...++ +..+++.....
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 2334544332 44566655443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.3e-06 Score=97.83 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
|+.+++|+.++|+|++|+|||||++.|++.... ...|+| .+|..+.+ +.++.+++..|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 356788999999999999999999999965422 246887 56655432 234556666665433221 1111
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
...||. |. ..++ . ......-..++.++++| |+.|+|+.+..
T Consensus 77 -----------------------------nliDTp-G~---~~f~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-G----EIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -----------------------------EEEeCC-Cc---cchH-H----HHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 112221 10 0111 1 12222335678899999 99999988763
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCc
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.++.+.+.+.++|++.|...
T Consensus 118 ----~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 ----AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----HHHHHHHTTCCEEEEEECGG
T ss_pred ----HHHHHHHccCCEEEEecCCc
Confidence 33333345888888888864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.2e-06 Score=83.27 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999774
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.1e-06 Score=84.79 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=34.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
.+.++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 34478999999999999999999999985 58899888764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.90 E-value=8e-06 Score=85.93 Aligned_cols=132 Identities=8% Similarity=0.154 Sum_probs=83.9
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g--------------~~vl~~slE------~s~~~l~- 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND--------------DVVNLHSLE------MGKKENI- 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT--------------CEEEEEESS------SCHHHHH-
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC--------------CeEEEEECC------CCHHHHH-
Confidence 357777777999999999999999999999888742211 11 234554422 2333322
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
.++......+.+.+..+ | ...||.+|++|+..|...+.++++++.|+|... .
T Consensus 113 -----------------~R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 113 -----------------KRLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp -----------------HHHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred -----------------HHHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 22222211122222111 1 013999999999999999999999999998643 3
Q ss_pred HHHHHHHHHHHhC-CcE--EEEEecC
Q 044602 270 NKLIQVLQKVAKA-GRT--VITTIHQ 292 (674)
Q Consensus 270 ~~i~~~L~~l~~~-g~t--vi~~~H~ 292 (674)
..+.+.++++.++ |.. +|++-|=
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 4566667776654 666 7777553
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.4e-05 Score=82.12 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 112 LKGIT-GSICPGEILALMGPSGSGKTTLLKIVGGRL-TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 112 L~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+...| | ....+.|+.-+..+ ...+-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44433 568999999999999999999999888642 121100 0 01235555444321 1222111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG-ERKRTSIGYEIL----VDPSLLLLDEPTSGL 264 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~iA~aL~----~~P~illLDEPTsgL 264 (674)
...... ... +++++.+-+. +..++. +.+.+..++.++ .+++++++|+.++-.
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 111111 111 1223322111 112222 234555666666 568999999999866
Q ss_pred CHH------------HHHHHHHHHHHHHhC-CcEEEEEecCC
Q 044602 265 DST------------SANKLIQVLQKVAKA-GRTVITTIHQP 293 (674)
Q Consensus 265 D~~------------~~~~i~~~L~~l~~~-g~tvi~~~H~~ 293 (674)
+.. ...+++..|++++++ |.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 124555566666654 88999888853
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.87 E-value=9.7e-06 Score=84.71 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEecCCchHHHhhcCE
Q 044602 234 ISGGERKRTSIGYEIL--VDPSLLLLDEPTSGLDSTS-ANKLIQVLQKVAKA-GR--TVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 234 LSgGerqRv~iA~aL~--~~P~illLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~D~ 303 (674)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+.. .+..++|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~ 168 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAI 168 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHH
Confidence 898886 4566666 68999999 7899877 67778888888764 42 5555666533 24444443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7e-05 Score=78.96 Aligned_cols=143 Identities=21% Similarity=0.268 Sum_probs=78.9
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 112 LKGIT-GSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 112 L~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
|+.+- +-+++|+++.|.||+|+|||||+..++.....+ ..| | ....+.|+.-+..+ ...+-..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~~ 160 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIEN 160 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44443 579999999999999999999999888533111 111 0 01235555443321 1111111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG-ERKRTSIGYEIL---VDPSLLLLDEPTSGLD 265 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~iA~aL~---~~P~illLDEPTsgLD 265 (674)
....+. ... +++++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-.+
T Consensus 161 ~~~~~g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 161 MAKALG----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHhC----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 111111 111 1122211 010 123333 335677788888 5799999999998653
Q ss_pred H--------HH----HHHHHHHHHHHHhC-CcEEEEEecC
Q 044602 266 S--------TS----ANKLIQVLQKVAKA-GRTVITTIHQ 292 (674)
Q Consensus 266 ~--------~~----~~~i~~~L~~l~~~-g~tvi~~~H~ 292 (674)
. .. ..+++..|++++++ |.+||++.|-
T Consensus 218 ~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 218 AEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 2 11 24455566666654 8899988775
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=75.91 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCcEEEEEecCCc---hHH
Q 044602 235 SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS----------ANKLIQVLQKVAK----AGRTVITTIHQPS---SRM 297 (674)
Q Consensus 235 SgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~----------~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i 297 (674)
+++++.|..++.+...+|.+|++||+.+-++... ...++..+..... .+..+|.+|+++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4577778888888888999999999987765422 2233333333221 2356777888753 344
Q ss_pred HhhcCEEEEEe
Q 044602 298 FHMFDKLLLIS 308 (674)
Q Consensus 298 ~~~~D~v~~L~ 308 (674)
.+-||+.+.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 55567655443
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=78.57 Aligned_cols=46 Identities=30% Similarity=0.392 Sum_probs=36.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCC
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~ 181 (674)
--++++|++++|+|+||||||||.+.|++.+. .+.+++||+.+++.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--------------------TEEEEEGGGGBCCG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--------------------CcEEEeCCccccCH
Confidence 34567899999999999999999999998652 36777787766653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.76 E-value=9.2e-06 Score=79.67 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=7.8e-06 Score=77.67 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=31.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 468999999999999999999999853 7788877654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.70 E-value=7.3e-05 Score=81.84 Aligned_cols=125 Identities=11% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
++.+++++||+||||||++..|++.+.. ..++|.+-+.+.. .. ...|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~-----------------r~-~a~eqL------------ 144 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVY-----------------RP-AAYDQL------------ 144 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCS-----------------CH-HHHHHH------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCcc-----------------ch-hHHHHH------------
Confidence 6899999999999999999999986633 2455555433311 00 112222
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHH
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT-SG--LDSTSANKLIQVLQ 277 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT-sg--LD~~~~~~i~~~L~ 277 (674)
...-+..|++-.... .+..--+--+-+++.+...+++++|+|+|- .+ .|+....++.+.++
T Consensus 145 ---------~~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 145 ---------LQLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp ---------HHHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred ---------HHHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 222233344321110 011111222334555555689999999997 34 78877777777655
Q ss_pred HHHhCCcEEEEEecC
Q 044602 278 KVAKAGRTVITTIHQ 292 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~ 292 (674)
.+......+++.+|.
T Consensus 209 ~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 209 VLKPDDVILVIDASI 223 (433)
T ss_dssp HHCCSEEEEEEEGGG
T ss_pred hhCCcceEEEEeCcc
Confidence 553334444454544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.8e-06 Score=87.38 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999755
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.65 E-value=8.6e-06 Score=79.67 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=33.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~ 160 (674)
.++|++++|+|+||||||||++.|++.+.+ ..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCeEEEeccC
Confidence 578999999999999999999999987632 36777766544
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.7e-06 Score=89.78 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=36.4
Q ss_pred ccccccceeeeEEEEeCCe------EEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 105 DKDYKHILKGITGSICPGE------ILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 105 ~~~~~~iL~~vs~~i~~Ge------~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+.++.|++++..+.+++ ++||.||||||||||+++|++++.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445667888888887777 999999999999999999998764
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.3e-06 Score=78.31 Aligned_cols=40 Identities=30% Similarity=0.273 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--EEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G--~I~~~g~~~ 161 (674)
++|++++|+|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHH
Confidence 47999999999999999999999986532 45 666666544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.4e-06 Score=82.10 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=42.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC--CCCccEEEE--------CCEeCCh-----hccccEEEEccCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT--DDVKGNITY--------NDIPYNP-----ALKRRIGFVTQDD 176 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~--~~~~G~I~~--------~g~~~~~-----~~~~~igyv~Q~~ 176 (674)
+.+++|+|||||||||+.++|++.+. ...+|++.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997542 234688876 6776642 3567789998864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00043 Score=76.13 Aligned_cols=171 Identities=13% Similarity=0.211 Sum_probs=94.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.=+ ++..+-..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g--------------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EG--------------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TC--------------CCEEEEESS------SCHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CC--------------CeEEEEECC------CCHHHHHH
Confidence 3577777779999999999999999999998887533111 12 113332211 12221111
Q ss_pred H--HHhhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeC
Q 044602 190 F--AAFLRLP------GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDE 259 (674)
Q Consensus 190 ~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDE 259 (674)
- +.....+ ..++..+ ..++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcC
Confidence 0 0000000 0122222 22333344433211111 111 125777665 34556665 4799999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHHHhC-CcEEEEEecCC-----------c-------hHHHhhcCEEEEEeC
Q 044602 260 PTSGLDS----------TSANKLIQVLQKVAKA-GRTVITTIHQP-----------S-------SRMFHMFDKLLLISE 309 (674)
Q Consensus 260 PTsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~~-----------~-------~~i~~~~D~v~~L~~ 309 (674)
.+.-.+. .....+.+.|+.++++ |.+||+++|-. . ..+.+.+|.|+.|..
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 9764432 1224667778888775 89999998831 1 024567899998863
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00033 Score=70.75 Aligned_cols=34 Identities=35% Similarity=0.673 Sum_probs=25.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 566677666666 8899999999999999999855
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=2.4e-05 Score=78.34 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=76.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
.+|+.+++.||+||||||++.++...... ..| ..+.++.+.+.+......++.+++.........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~-~~~------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~-- 138 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFI-QND------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG-- 138 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHH-HTT------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT--
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchh-hcC------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC--
Confidence 57899999999999999998877531100 011 012345566655433333444444321100000
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccc--CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLERCRHTRVG--GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS-GLDSTSANKLIQVL 276 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~L 276 (674)
...|.....+.... +..+--.+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+
T Consensus 139 --------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 139 --------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp --------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred --------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 00000000000000 0001113456655553 33578999999999976 68877665555555
Q ss_pred HHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 277 QKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 277 ~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+...+-++++++.--+...+.++++
T Consensus 203 ~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 44333335666665444444445554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.1e-05 Score=72.30 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999866
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=6.8e-05 Score=69.94 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=25.1
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999987
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.39 E-value=4.6e-05 Score=72.49 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00019 Score=74.73 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999854
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0008 Score=67.14 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEecC
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK--AGRTVITTIHQ 292 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~ 292 (674)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888666555555443322 13588888884
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.30 E-value=1.4e-05 Score=85.10 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=42.1
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~ 160 (674)
.+.+++++++.+++|.+++|+|++|+|||||++.|++.+.+ ..|+|.+-+.+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d 93 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence 35688999999999999999999999999999999986632 35666554443
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00068 Score=72.41 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---Hh-CCcEEEEEecCCch-----
Q 044602 240 KRTSIGYEIL--VDPSLLLLDEPTSGLDST-------------SANKLIQVLQKV---AK-AGRTVITTIHQPSS----- 295 (674)
Q Consensus 240 qRv~iA~aL~--~~P~illLDEPTsgLD~~-------------~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~----- 295 (674)
+-+.+++.++ .+|+++++|+++.-.... .++.+.+.+++| ++ .|.+||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666665 579999999999866311 112344444444 33 48999988875321
Q ss_pred ----------HHHhhcCEEEEEeCCEEEEec
Q 044602 296 ----------RMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 296 ----------~i~~~~D~v~~L~~G~iv~~G 316 (674)
.+...+|-++.+.+.+....|
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 345678888888776654443
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=71.53 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcE-EEEEecCCc
Q 044602 250 VDPSLLLLDEPTSGL-DSTSANKLIQVLQKVAKAGRT-VITTIHQPS 294 (674)
Q Consensus 250 ~~P~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 294 (674)
.+|.++++||...-- +......+.+.++...+.+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999975432 233367788888877666655 777777543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00012 Score=80.21 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++.+|++++|+|||||||||||++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999987643
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.20 E-value=4.4e-05 Score=86.31 Aligned_cols=50 Identities=32% Similarity=0.449 Sum_probs=40.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~ 160 (674)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+ ..|+|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecccc
Confidence 34677777777 8999999999999999999999987743 47888777643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0006 Score=71.32 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=35.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 249 LVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 249 ~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
..+|++|++||+.. .-|..++..+...+..+.+.|+.+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999866 23447788888898888777878888877543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=73.60 Aligned_cols=44 Identities=27% Similarity=0.300 Sum_probs=29.9
Q ss_pred ceeeeEEEEe---CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE
Q 044602 111 ILKGITGSIC---PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY 156 (674)
Q Consensus 111 iL~~vs~~i~---~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~ 156 (674)
-|.++|+++. +|.+++|.|++||||||+++.|+..+. . .+++..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCcee
Confidence 3678888777 999999999999999999999998763 2 455543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00059 Score=68.05 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------CCchHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH---------QPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 308 (674)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355666777777999999999 56677888999999876
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00029 Score=77.36 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-----------CCCccEEEECCEeCC----hhccccEEEEccCCCCCCCCCHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLT-----------DDVKGNITYNDIPYN----PALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~-----------~~~~G~I~~~g~~~~----~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
-.++|+|+||+|||||+|.|+|... .+.+|.+.++|+++. ...++..++.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999998642 135689999998642 1234444444454444444344444
Q ss_pred HH
Q 044602 188 LV 189 (674)
Q Consensus 188 l~ 189 (674)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.13 E-value=4.2e-05 Score=81.95 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=31.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0007 Score=65.53 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+.|.||+|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00046 Score=65.15 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999854
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00012 Score=77.99 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=32.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
+++.+++|+|++|||||||+|.|+|.+.+ ..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecC
Confidence 56889999999999999999999986633 367777766554
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=68.89 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=25.4
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999863
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00053 Score=75.49 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=29.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-|+.+.+-+.+|+++.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666666789999999999999999999877764
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=68.33 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.6
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 112 LKGIT-GSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 112 L~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5689999999999999999999988874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0018 Score=66.01 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00058 Score=65.47 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=20.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998887 6789999999999999999974
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00024 Score=69.70 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=33.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--EEEECCEe
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIP 160 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G--~I~~~g~~ 160 (674)
+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECChH
Confidence 56899999999999999999999998763 2356 77777543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00048 Score=67.12 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=25.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999999765
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.82 E-value=5.4e-06 Score=87.53 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
+++++++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 778999888888888876533 455667777654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.001 Score=68.73 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...+.|.||+|+||||+.+.|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999865
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00053 Score=65.77 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=26.2
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999965
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00027 Score=68.40 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=31.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458899998888875 689999999999999999863
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.006 Score=64.85 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+..-+.|.||+|+|||||.++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999644
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00069 Score=71.81 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998644
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0051 Score=61.60 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444568899999999999999999643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00048 Score=75.20 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=39.8
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
+++++. +|++++++|+|||||||++..|++.+.+ ..|+|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeecccc
Confidence 678887 8999999999999999999999997744 4788988777653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00087 Score=64.93 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=65.74 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=28.5
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4566655699999999999999999999877763
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00016 Score=77.46 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=28.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI 159 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~ 159 (674)
.+.+++++++.| +|+|++|+|||||++.|.|... ...|.+..++.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~~ 73 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERVIPGAAE 73 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCCc
Confidence 356788998877 9999999999999999987542 22444444443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=70.56 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=27.4
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888886 99999999999999999986
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.028 Score=60.08 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999977763
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0003 Score=74.80 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=34.1
Q ss_pred ccceeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHHcCC
Q 044602 109 KHILKGITGSICPGEI--LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~--~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478888888999998 9999999999999999999865
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.009 Score=75.10 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=25.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 5999999999999999999999998864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=61.91 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=62.13 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+|.++.|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999866
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.033 Score=58.28 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456678999999999999999999754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=60.38 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0015 Score=63.19 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0004 Score=72.31 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=37.2
Q ss_pred ee-eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 113 KG-ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 113 ~~-vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
++ ++++.+ |++++++|++|+||||++..|++.+.. ..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 45 777766 999999999999999999999987643 356777665553
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00086 Score=67.82 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=35.6
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence 444444 567789999999999999999999998652 25567776543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0018 Score=61.94 Aligned_cols=37 Identities=38% Similarity=0.324 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCE
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDI 159 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~ 159 (674)
.+++|+|+||||||||++.|.+.+.. ..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 57899999999999999999976421 12366665543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00051 Score=72.47 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=35.4
Q ss_pred cccceeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHHcCCC
Q 044602 108 YKHILKGITGSICPGEI--LALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~--~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35688888999999998 99999999999999999998653
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=60.16 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0017 Score=70.11 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=33.1
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC----------CCCCccEEEECCE
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRL----------TDDVKGNITYNDI 159 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~----------~~~~~G~I~~~g~ 159 (674)
-..+..|..++|+|+||+|||||+|.|+|.. ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788899999999999999999999861 1234677777653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=63.21 Aligned_cols=74 Identities=27% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecCC---------------------chHHHhhcCEE
Q 044602 247 EILVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITTIHQP---------------------SSRMFHMFDKL 304 (674)
Q Consensus 247 aL~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~---------------------~~~i~~~~D~v 304 (674)
++..+|+++++||+-. ..+........+.+..+...|..++.++|-- .+.+++.||.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 3446899999999764 2333222333333344455688999998821 12344566776
Q ss_pred EEEeCCEEEEecChhHHHHHHHh
Q 044602 305 LLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
.+++ =+|+++.+-++.
T Consensus 160 ~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEBC-------CCHHHHHHHHHT
T ss_pred EEec-------CCHHHHHHHHHC
Confidence 6654 467777766554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=63.14 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999999999744
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0034 Score=59.56 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0032 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.009 Score=62.64 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
|+.+-+-+.+|..+.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336788999999999999999999999884
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.016 Score=53.00 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|++|..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 45689999984 68888888888877332 224567777776543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0035 Score=62.86 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999643
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0056 Score=59.44 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------CCchHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH---------QPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 308 (674)
+.+++++||.-- +|+. .++.++++++.|+.||++.+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999654 6643 35677777778999999999 55677888999998775
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=59.41 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357889999999999999999998543
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0039 Score=63.08 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999754
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0045 Score=57.47 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIV 142 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L 142 (674)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0049 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.008 Score=57.11 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999766653
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.014 Score=53.39 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
++.+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 6788888888888876543456677777664
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999755
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987544
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.02 Score=56.38 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------CCchHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH---------QPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 308 (674)
+.+++++||.-- +|.. .++.+++++..|+.||++-+ .++.++..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999966 6543 33777777778999999999 67788889999998875
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0054 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.006 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999755
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.005 Score=58.26 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999843
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0062 Score=59.60 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999996
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.037 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=21.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+=+++| ++.|.||+|+|||||+--++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 457889 99999999999999954443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0065 Score=56.99 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 044602 123 EILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G 144 (674)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.054 Score=58.03 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++.-+.|.||+|+|||+|.++++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999998654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0066 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0064 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0065 Score=57.27 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999654
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.033 Score=71.02 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=86.2
Q ss_pred ceeeeE--EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGIT--GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs--~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
-|+.+- +=+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G--------------~~vlyis~E~s~~~---~~--- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EG--------------KTCAFIDAEHALDP---IY--- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TT--------------CCEEEECTTSCCCH---HH---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cC--------------CeEEEEEcCCCHHH---HH---
Confidence 355544 35999999999999999999998877743211 11 12444433221100 00
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDEPTSGLD- 265 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDEPTsgLD- 265 (674)
+ +.+|++. .+-.+- ..-+. .|-+.+++.++ .+|++++.|.-++=..
T Consensus 428 --a----------------------~~lGvd~-~~L~I~----~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~ 476 (2050)
T 3cmu_A 428 --A----------------------RKLGVDI-DNLLCS----QPDTG--EQALEICDALARSGAVDVIVVDSVAALTPK 476 (2050)
T ss_dssp --H----------------------HHTTCCT-TTCEEE----CCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred --H----------------------HHcCCCH-HHeEEe----CCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcc
Confidence 1 1122210 000111 11233 23456666665 4799999999886552
Q ss_pred H------------HHHHHHHHHHHHH---Hh-CCcEEEEEecCCch---------------HHHhhcCEEEEEeCCEEEE
Q 044602 266 S------------TSANKLIQVLQKV---AK-AGRTVITTIHQPSS---------------RMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 266 ~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~ 314 (674)
+ ..++.+.+.|++| ++ .|.+||++.|-... .+...+|-++.|++.....
T Consensus 477 ~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~ 556 (2050)
T 3cmu_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (2050)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccccc
Confidence 1 1233455666666 34 58999999874211 3567889999988665443
Q ss_pred ec
Q 044602 315 YG 316 (674)
Q Consensus 315 ~G 316 (674)
.|
T Consensus 557 ~g 558 (2050)
T 3cmu_A 557 EG 558 (2050)
T ss_dssp ET
T ss_pred CC
Confidence 33
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0034 Score=60.94 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999765
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0066 Score=62.67 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g 158 (674)
..|.++.|.|||||||||+.+.|+..+ + .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~-~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET-Q--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT-T--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEEec
Confidence 457899999999999999999998654 2 35566665
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0074 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.008 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999963
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0089 Score=56.73 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.13 Score=64.82 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=85.7
Q ss_pred ceeeeE--EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGIT--GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs--~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
-|+.+- +=+++|+++.|.||+|+|||||.--++..... .| ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~--~G--------------~~vlyis~E~s~~~---~---- 426 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EG--------------KTCAFIDAEHALDP---I---- 426 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH--TT--------------CCEEEECTTSCCCH---H----
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hC--------------CCeEEEEccCchHH---H----
Confidence 355554 35899999999999999999998777642211 11 23555544322110 0
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDEPTsgLD~ 266 (674)
.+ +.+|++.. +-.+- ..-++.| -+.+++.++ .+|+++++|..++=...
T Consensus 427 -~a----------------------~~lGvd~~-~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~ 476 (1706)
T 3cmw_A 427 -YA----------------------RKLGVDID-NLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPK 476 (1706)
T ss_dssp -HH----------------------HHTTCCGG-GCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred -HH----------------------HHcCCCHH-HeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhcc
Confidence 01 11222110 00010 0112332 334555555 47999999999876641
Q ss_pred -------------HHHHHHHHHHHHH---Hh-CCcEEEEEecCCc---------------hHHHhhcCEEEEEeCCEEEE
Q 044602 267 -------------TSANKLIQVLQKV---AK-AGRTVITTIHQPS---------------SRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 267 -------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G~iv~ 314 (674)
...+.+.+.+++| ++ .|.+||++.|-.. ..+...+|-++.+.+.+...
T Consensus 477 ~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~ 556 (1706)
T 3cmw_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc
Confidence 1223444555555 33 4999999988521 24667899988887654433
Q ss_pred ec
Q 044602 315 YG 316 (674)
Q Consensus 315 ~G 316 (674)
.|
T Consensus 557 ~g 558 (1706)
T 3cmw_A 557 EG 558 (1706)
T ss_dssp ET
T ss_pred cC
Confidence 33
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.015 Score=64.63 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998644
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0079 Score=57.01 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.13 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999655
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0081 Score=61.14 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.008 Score=57.46 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998643
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998755
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.016 Score=60.58 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=31.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45789988888 7899999999999999999999864
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=55.95 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.011 Score=54.31 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.057 Score=53.84 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=45.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC---------CchHHHhhcCEEEEEe
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ---------PSSRMFHMFDKLLLIS 308 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~~L~ 308 (674)
+.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++..+||.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999977654 666666666689999999999 8888999999999885
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0089 Score=56.40 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=18.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=57.88 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++..++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.49 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=53.76 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=59.59 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.17 Score=55.06 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+-.=+.+.||+|+|||+|.+++|+..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33448899999999999999999754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.022 Score=60.83 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC----------CCCccEEEECC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT----------DDVKGNITYND 158 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~----------~~~~G~I~~~g 158 (674)
|-.++|+|.+|+|||||+|.|+|... .+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 23457777765
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.018 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.017 Score=53.83 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998643
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.013 Score=57.37 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998643
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=55.34 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.014 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999975
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.017 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.01 Score=63.71 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 251 DPSLLLLDEPTSGLD---STSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 251 ~P~illLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
.|.++++||.=.=++ +.....+.+.+++.++.|..++++||.+++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478999999988774 667778888888888889999999999865
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=56.16 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998543
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.019 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.015 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.019 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.026 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999755
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999754
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.02 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.016 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.017 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.02 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.19 Score=54.84 Aligned_cols=71 Identities=20% Similarity=0.365 Sum_probs=43.2
Q ss_pred HHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh----CCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 244 IGYEILVDPSLLLLDEPTSG----------LDSTSANKLIQVLQKVAK----AGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 244 iA~aL~~~P~illLDEPTsg----------LD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+..|--..|.|+|+||--+- -|......+..+|..+-. .+..||.+|++|.. .|. .++..
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDp-AllRp 340 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDP-ALLRP 340 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCT-TTTST
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCH-HHhCC
Confidence 34455568999999998542 244455556666766642 25688999998753 232 12455
Q ss_pred CE---EEEecChhH
Q 044602 310 GY---PVYYGKARE 320 (674)
Q Consensus 310 G~---iv~~G~~~~ 320 (674)
|| .++.+.|++
T Consensus 341 GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 341 GRLDRKVEIPLPNE 354 (437)
T ss_dssp TSEEEEECCCCCCH
T ss_pred CccceeeecCCcCH
Confidence 54 356666543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.022 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999853
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.018 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.032 Score=54.46 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=29.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567765555 57899999999999999999998654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.018 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.018 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.034 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999887643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.02 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
.++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.022 Score=59.20 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999853
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.019 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.013 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 044602 122 GEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=58.70 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|.|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998743
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.021 Score=53.14 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.021 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.021 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998643
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.023 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||+|.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.022 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.024 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=56.84 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998644
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.026 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999853
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.025 Score=55.32 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998644
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.022 Score=60.97 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999974
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.022 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.025 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998643
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.024 Score=56.91 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.028 Score=55.33 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.024 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.033 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.023 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.675 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.057 Score=64.12 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+.|.||+|+|||+|.+.|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999755
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.026 Score=53.36 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998743
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.025 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.027 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.025 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.03 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.033 Score=55.08 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998543
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.83 E-value=0.028 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.03 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.032 Score=56.43 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999843
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.028 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.029 Score=57.50 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~ 143 (674)
.+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.03 Score=57.10 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.037 Score=54.48 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+|.+++|.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998655
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.029 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.031 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998533
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.029 Score=53.56 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.028 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.018 Score=55.91 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.032 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.029 Score=52.33 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.039 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.032 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.036 Score=56.85 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 044602 123 EILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G 144 (674)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.032 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.03 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.62 E-value=0.032 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.018 Score=59.58 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998543
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.025 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.032 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.03 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.028 Score=55.94 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=21.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998655
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.033 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.033 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.034 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.033 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
=.++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.033 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.03 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.034 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.038 Score=53.38 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.034 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
=.++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.033 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.045 Score=57.09 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.042 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998655
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.035 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.042 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999865
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.04 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999853
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.041 Score=58.07 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999755
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.042 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.03 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.16 Score=59.44 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.+.||+|+|||+|.++|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.041 Score=53.41 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.04 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.041 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988864
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.047 Score=53.88 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
++|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999997663
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.038 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.049 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.++.+.|++||||||+.+.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998755
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.028 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.074 Score=50.67 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=27.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+..+|..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456655555 4588999999999999999988874
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.043 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.046 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.04 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.05 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.03 E-value=0.041 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999743
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.057 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+|.++++.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998654
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.19 Score=64.18 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=29.9
Q ss_pred eeeeEE--EEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 112 LKGITG--SICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 112 L~~vs~--~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|+.+.. -+++|+++.|-|++|+|||||+..++...
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 566654 69999999999999999999999888643
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.054 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999765
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.066 Score=52.75 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=40.3
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCch---------HHHhhcCEEEEEe
Q 044602 249 LVDPSLLLLDEPTS----GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSS---------RMFHMFDKLLLIS 308 (674)
Q Consensus 249 ~~~P~illLDEPTs----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~---------~i~~~~D~v~~L~ 308 (674)
-.+|+++++|--+. .-|.....++...|++++++ |.++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788999986542 12455566777788887764 9999999886422 1235688888775
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=92.95 E-value=0.035 Score=55.99 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998655
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.05 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.053 Score=56.86 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999755
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.049 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999754
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.058 Score=59.31 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 566789999999999999999999998643
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.061 Score=51.93 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999865 7877777666666432 13677888888754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.77 E-value=0.049 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.062 Score=52.60 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.027 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.16 Score=56.23 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=53.7
Q ss_pred cCccCHHHHHHHHHH--HHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 231 IKGISGGERKRTSIG--YEILV---------------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 231 ~~~LSgGerqRv~iA--~aL~~---------------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
..+.||||+|-.-+| .+++. .=+++++||+ +-+|.......++.++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 457999999964333 33332 1157999999 999999999999999876 7788888755
Q ss_pred chHHHhhcCEEEEEe
Q 044602 294 SSRMFHMFDKLLLIS 308 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~ 308 (674)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2556778888775
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.055 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.58 E-value=0.07 Score=55.57 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.039 Score=52.00 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.065 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999865
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.059 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.056 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.053 Score=59.53 Aligned_cols=52 Identities=6% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 238 ERKRTSIGYEILVDPSLLLLDEPT-SGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 238 erqRv~iA~aL~~~P~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
|++....+...+.+++++++.... .++.... ..+.+.++ +.++.+|++.+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 666667777788888876655443 4555543 44555543 3577888887763
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.35 E-value=0.029 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.062 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
=.++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998853
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.078 Score=57.19 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.+++|+||+|||||||.+.|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.073 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.069 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.021 Score=57.59 Aligned_cols=33 Identities=39% Similarity=0.647 Sum_probs=25.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+.......| +.|.||+|+|||||.++++...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444445555 7799999999999999999743
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.098 Score=50.06 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc---------hHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS---------SRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~ 308 (674)
+++++++||.-- +|+ .+++.|+++++.|..|+++.++.. ..+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 543 366677777777999999988433 34555677775554
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.11 Score=53.34 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999988654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.28 E-value=0.11 Score=53.21 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999864
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.1 Score=49.69 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
++.++++||. ..++......+.+.+.+. ..+..+|++++++
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6889999996 456777766776666553 2356677777664
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.11 Score=53.78 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998875
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.11 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++|+|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998543
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.02 E-value=0.1 Score=56.31 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 208 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.++++++.++.... . ..+|.+|.+++.-..-+...|-|+++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777665432 1 26899998888777667779999887
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.12 Score=54.67 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.096 Score=57.09 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=90.94 E-value=0.074 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.12 Score=55.25 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----------CCccEEEECCEe
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTD----------DVKGNITYNDIP 160 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~----------~~~G~I~~~g~~ 160 (674)
-+||+|.+-+|||||+|.|+|.... +..|.+.++|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 5899999999999999999985421 234777777654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.094 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+|=.++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.15 Score=49.68 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..++|=|+-||||||+.+.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999766
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.047 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998875
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.13 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999964
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.13 Score=54.64 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=22.8
Q ss_pred ccCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 044602 233 GISGGERKRTSIGYEI---LV--DPSLLLLDEPT 261 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL---~~--~P~illLDEPT 261 (674)
.+|+||+||..++++| .. +++++++||||
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.19 Score=48.73 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 239 RKRTSIGYEIL--VDPSLLLLDEPTS--GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 239 rqRv~iA~aL~--~~P~illLDEPTs--gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
++.+.-++..+ .+.++++|||.+. .++-....++++.|.+- -++..||+|...+..++.+.+|.|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44556666777 4579999999977 34445555677777642 2478999999999999999999999987544
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.11 Score=58.84 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.7
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|++++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 455542 233568999999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 674 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-39 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-38 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-38 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-38 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-34 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-33 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-33 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-32 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-32 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-32 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-32 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-30 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-29 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-28 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-26 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-24 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-07 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 7e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.003 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 143 bits (363), Expect = 1e-39
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 15/222 (6%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K + + + +I GE L L+GPSG GKTT L+++ G +G I + D
Sbjct: 12 LTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDV 70
Query: 162 N--PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
P R I V Q + P +TV E + F ++ + + RV+ + L +E
Sbjct: 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIE 127
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ +SGG+R+R ++ I+V+P +LL+DEP S LD+ + ++K+
Sbjct: 128 ELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 182
Query: 280 A-KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
K T I H M D++ +++ G + G E
Sbjct: 183 QQKLKVTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTE 223
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 141 bits (357), Expect = 1e-38
Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 27/236 (11%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K Y +LKG++ G++++++G SGSGK+T L+ + L +G I N
Sbjct: 8 LHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNI 66
Query: 162 N-----------------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ 204
N L+ R+ V Q L +TV E ++ +++
Sbjct: 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHD 124
Query: 205 KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264
R L ++G++ + + +SGG+++R SI + ++P +LL DEPTS L
Sbjct: 125 ARERALKYLAKVGIDERAQGK----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
D ++++++Q++A+ G+T++ H+ H+ ++ + +G G +
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR-HVSSHVIFLHQGKIEEEGDPEQ 235
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 140 bits (354), Expect = 1e-38
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 16/219 (7%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------- 162
+ LK + +I GE +++MGPSGSGK+T+L I+G L +G + ++I N
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 163 -PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
+ +IGFV Q L+P LT E + + G M+ +++ R LK LE
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+SGG+++R +I + +P ++L D+PT LDS + K++Q+L+K+ +
Sbjct: 138 FANH----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 282 A-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319
G+TV+ H + + ++++ + +G K R
Sbjct: 194 EDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLR 230
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 141 bits (358), Expect = 1e-38
Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 21/253 (8%)
Query: 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGP 130
F ++ KV+ + + ++ VS S L L +LK I +I GE+LA+ G
Sbjct: 15 GFGELLEKVQQSNGDRKHSSDENNVS--FSHLCLV--GNPVLKNINLNIEKGEMLAITGS 70
Query: 131 SGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190
+GSGKT+LL ++ G + +G I ++ R+ F +Q ++P T++E ++F
Sbjct: 71 TGSGKTSLLMLILG-ELEASEGIIKHSG---------RVSFCSQFSWIMPG-TIKENIIF 119
Query: 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV 250
+ Q+ +T +G G +SGG+R R S+ +
Sbjct: 120 GVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYK 175
Query: 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310
D L LLD P LD + ++ + A +T I + DK+L++ +G
Sbjct: 176 DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH--LRKADKILILHQG 233
Query: 311 YPVYYGKARESME 323
+YG E
Sbjct: 234 SSYFYGTFSELQS 246
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 129 bits (325), Expect = 5e-35
Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 104 LDKDY-KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162
L Y K +L+ IT +I G ++ GP+G GKTTLLK + L KG I YN +P
Sbjct: 8 LSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPIT 66
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
+K +I F+ ++ ++ +++VE+ L A + + L+ + + +
Sbjct: 67 K-VKGKIFFLPEEIIVPRKISVEDYLKAVA-----SLYGVKVNKNEIMDALESVEVLDLK 120
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ +S G +R + +LV+ + +LD+P +D S +K+++ + ++ K
Sbjct: 121 K------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 174
Query: 283 GRTVITTIHQ 292
VI + +
Sbjct: 175 KGIVIISSRE 184
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 130 bits (328), Expect = 9e-35
Identities = 50/237 (21%), Positives = 103/237 (43%), Gaps = 24/237 (10%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
+ K + L G++ S+ G++ ++GP+GSGK+TL+ ++ G L D +G + + +
Sbjct: 10 IVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDI 68
Query: 162 NP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN----------RQQKY 206
I Q L ++TV E L+ +N ++
Sbjct: 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV 128
Query: 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
+ IL+ L L + G +SGG+ K IG ++ +P ++++DEP +G+
Sbjct: 129 EKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183
Query: 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
A+ + + ++ G T + H+ + + D L ++ G + G+ E ++
Sbjct: 184 GLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (326), Expect = 1e-34
Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 15/229 (6%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
L K K ILKGI+ I GEI L+GP+G+GKTT L+I+ + G +T
Sbjct: 8 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNV 66
Query: 162 N---PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218
+++ I ++ ++ + E L F A + + V+ + GL
Sbjct: 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGL 123
Query: 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
RV S G ++ I ++V+P L +LDEPTSGLD +A ++ ++L++
Sbjct: 124 GEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327
++ G T++ + H + + D++ LI G V G E E + +
Sbjct: 179 ASQEGLTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 126 bits (317), Expect = 2e-33
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN------- 162
L ++ + G+I ++G SG+GK+TL++ V +G++ +
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESEL 77
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
+R+IG + Q LL TV + L N + + RV +L +GL
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKH 134
Query: 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ +SGG+++R +I + +P +LL DE TS LD + ++++L+ + +
Sbjct: 135 DSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 283 -GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
G T++ H+ + + D + +IS G + E
Sbjct: 190 LGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSE 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 124 bits (314), Expect = 7e-33
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 14/220 (6%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---YNPAL 165
ILK I SI GE +A +G SG GK+TL+ ++ R D G I + +
Sbjct: 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLI-PRFYDVTSGQILIDGHNIKDFLTGS 89
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GLERCRH 223
R + Q D +L TV+E ++ + K A + L G +
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD---- 145
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
T VG +K +SGG+++R SI L +P +L+LDE TS LD S + + + L ++K
Sbjct: 146 TEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-D 203
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
RT + H+ S+ DK+++I G+ V G RE +
Sbjct: 204 RTTLIVAHRLSTIT--HADKIVVIENGHIVETGTHRELIA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 1e-32
Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-- 162
++ +L+G+T ++ PGE+ AL+GP+GSGK+T+ ++ L G + + P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNLYQPTGGQLLLDGKPLPQY 81
Query: 163 --PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
L R++ V Q+ + +++E + + + P + GL +
Sbjct: 82 EHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQ 139
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
T V + +SGG+R+ ++ ++ P +L+LD+ TS LD+ S ++ Q+L +
Sbjct: 140 GYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESP 198
Query: 281 K-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+ R+V+ S D +L + G G ++ ME
Sbjct: 199 ERYSRSVLLITQHLSLVE--QADHILFLEGGAIREGGTHQQLME 240
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 123 bits (311), Expect = 2e-32
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 13/220 (5%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PA 164
L+ I I G+ +AL+G SGSGK+T+ ++ R D +G+I + +
Sbjct: 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLAS 86
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRH 223
L+ ++ V+Q+ L + + ++ AR+ + + ++
Sbjct: 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEY---SREQIEEAARMAYAMDFINKMDNGLD 143
Query: 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
T +G + +SGG+R+R +I +L D +L+LDE TS LD+ S + L ++ K
Sbjct: 144 TIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-N 201
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
RT + H+ S+ D+++++ +G V G E +
Sbjct: 202 RTSLVIAHRLSTIE--QADEIVVVEDGIIVERGTHSELLA 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 121 bits (306), Expect = 6e-32
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD----VKGNITYN 157
L Y H +KGI + G+I+ L+G +G+GKTT L + G + +
Sbjct: 12 LHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71
Query: 158 DIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL- 216
+ P + + I V + + P+LTV E L+ A+ R +++ ++ I
Sbjct: 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFP 127
Query: 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276
L+ G +SGGE++ +IG ++ P LL++DEP+ GL +++ +V+
Sbjct: 128 RLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
QK+ + G T++ + + ++ G V GKA E
Sbjct: 183 QKINQEGTTILLVEQNALGAL-KVAHYGYVLETGQIVLEGKASE 225
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 121 bits (306), Expect = 7e-32
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 12/220 (5%)
Query: 105 DKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-- 162
D IL I SI GE++ ++G SGSGK+TL K++ R G + +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLIDGHDLALA 70
Query: 163 --PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
L+R++G V QD+VLL ++ + + A ++ + A++ + R
Sbjct: 71 DPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGM---SVEKVIYAAKLAGAHDFISELR 126
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+ + G G+SGG+R+R +I ++ +P +L+ DE TS LD S + +++ + K+
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186
Query: 281 KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
K GRTVI H+ S+ D+++++ +G V GK +E
Sbjct: 187 K-GRTVIIIAHRLSTVK--NADRIIVMEKGKIVEQGKHKE 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 118 bits (296), Expect = 1e-30
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A 164
L ++G + GEIL L+GP+G+GK+TLL + G +T KG+I + P
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG-KGSIQFAGQPLEAWSATK 69
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
L +++Q V L + + + + + + L L+
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGR 121
Query: 225 RVGGGFIKGISGGERKRTSIGYEIL-------VDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
+SGGE +R + +L LLLLDEP + LD + L ++L
Sbjct: 122 STN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 176
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ + G ++ + H + + + L+ G + G+ E
Sbjct: 177 ALCQQGLAIVMSSHDLNHTL-RHAHRAWLLKGGKMLASGRREE 218
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 118 bits (296), Expect = 2e-30
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 11/219 (5%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PA 164
+ IL+ I+ P I+A GPSG GK+T+ ++ G IT + P +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLEN 73
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+ +IGFV+QD ++ E L + + + +
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRE---NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
G ISGG+R+R +I L +P +L+LDE T+ LDS S + + + L + K GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GR 189
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
T + H+ S+ + DK+ I +G GK E +
Sbjct: 190 TTLVIAHRLSTIV--DADKIYFIEKGQITGSGKHNELVA 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 6e-29
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 15/222 (6%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
+ K + + K I I GE + +GPSG GK+TLL+++ G L G++ +
Sbjct: 6 VTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRM 64
Query: 162 N--PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219
N P +R +G V Q L P L+V E + F L ++ RV + + L L
Sbjct: 65 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLA 121
Query: 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+ K +SGG+R+R +IG ++ +PS+ LLDEP S LD+ ++ + ++
Sbjct: 122 HLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 176
Query: 280 A-KAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ GRT+I H + DK++++ G GK E
Sbjct: 177 HKRLGRTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLE 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 111 bits (279), Expect = 2e-28
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 21/228 (9%)
Query: 104 LDKDY--KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
+ K + ++ ++ + GE + L+GPSG GKTT L+++ G L + +G I D
Sbjct: 9 VWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLV 67
Query: 162 N--------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213
P R I V Q L P +TV + + F LR + RQ+ RV+ +
Sbjct: 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVA 124
Query: 214 KELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
+ LGL + + +SGG+R+R ++G I+ P + L+DEP S LD+ ++
Sbjct: 125 ELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 274 QVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
L+K+ + G T I H M D++ +++ G G E
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDE 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 105 bits (263), Expect = 3e-26
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 22/229 (9%)
Query: 104 LDKDYK----HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI 159
+ K +K L + +I GE ++GPSG+GKTT ++I+ G L G + ++D
Sbjct: 9 VSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDR 67
Query: 160 PYN-------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI 212
P R+IG V Q L P LT E + F M++++ RV+ +
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEV 124
Query: 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
K L + + F + +SG +++R ++ ++ DPSLLLLDEP S LD+ +
Sbjct: 125 AKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 273 IQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
++++V G T++ H P+ +F + D++ ++ +G V GK +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 104 bits (260), Expect = 7e-26
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 17/221 (7%)
Query: 104 LDKDYK-HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162
L + +K L ++ + GE ++GP+G+GKT L+++ G G I +
Sbjct: 7 LSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVT 65
Query: 163 --PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
K I FV Q+ L P + V++ +R+ + + RV ++L +E
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKN--LEFGMRMKKIKDPK----RVLDTARDLKIEH 119
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+SGGE++R ++ ++ +P +LLLDEP S LD + ++L +
Sbjct: 120 LLDRN-----PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 281 KA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
K TV+ H + M D++ ++ +G + GK E
Sbjct: 175 KKNKLTVLHITHDQTE-ARIMADRIAVVMDGKLIQVGKPEE 214
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 99.3 bits (247), Expect = 4e-24
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQDDVL 178
+ L+GP+G+GK+ L+++ G + D +G + N DI P +R IGFV QD L
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE 238
P L+V + + N+ R ++ RV+ + ++LG+ + +SGGE
Sbjct: 82 FPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297
R+R ++ +++ P LLLLDEP S +D + L++ L+ V + ++ H
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE-A 190
Query: 298 FHMFDKLLLISEGYPVYYGKARE 320
+ D++ ++ G V GK +E
Sbjct: 191 AMLADEVAVMLNGRIVEKGKLKE 213
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 20/186 (10%), Positives = 44/186 (23%), Gaps = 33/186 (17%)
Query: 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV 184
+ + G G GKTTL+K + RL ++ KR
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKR----------------- 44
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI 244
++K + + + +
Sbjct: 45 --------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPILERAY 92
Query: 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304
++++DE + V Q + V+ TI + + ++
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEI 149
Query: 305 LLISEG 310
+
Sbjct: 150 RRLPGA 155
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.6 bits (109), Expect = 7e-06
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 221 CRHTRVGGGFIKGISGGERKRTSIGYEI---LVDPS-LLLLDEPTSGLDSTSANKLIQVL 276
++ +SGGE+ ++ PS +LDE + LD T+ ++ +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Query: 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308
++ I + MF D L+ +
Sbjct: 380 RRHRNPDLQFIVISLKN--TMFEKSDALVGVY 409
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.003
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 8/173 (4%)
Query: 124 ILALMGPSGSGKTTLLKIVGGRLTDD---VKGNITYNDIPYNPALKRRIGFVTQDDVLLP 180
+ L GP G GKTTL+ L V G T + + ++ L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 181 QLTVEETLVFAAFLRLPGNMNRQ--QKYARVQMILKELGLERCRHTRVGGGFIKGISGGE 238
++ +E ++ ++ A + + + V I +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV-IDEIGKMELFS 121
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
+ + L P ++L A L++ ++ +T +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA--LVEEIRNRKDVKVFNVTKEN 172
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.9 bits (84), Expect = 0.003
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRL 146
G IL L G GSGK+T+ + +
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLP 28
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 674 | |||
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.58 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.9 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.8 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.07 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.85 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.54 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.09 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.03 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.0 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.98 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.95 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.93 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.87 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.83 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.75 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.62 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.54 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.54 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.53 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.49 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.44 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.43 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.35 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.27 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.22 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.19 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.14 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.14 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.11 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.99 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.95 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.94 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.94 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.89 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.86 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.85 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.76 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.76 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.74 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.66 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.66 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.64 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.62 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.58 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.56 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.56 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.55 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.55 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.51 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.5 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.49 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.45 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.44 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.43 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.41 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.31 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.3 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.21 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.21 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.2 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.15 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.15 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.09 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.96 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.93 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.88 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.83 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.75 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.69 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.65 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.62 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.59 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.59 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.58 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.57 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.48 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.41 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.33 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.26 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.23 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.12 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.09 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.06 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.92 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.89 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.88 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.83 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.82 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.82 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.74 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.74 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.63 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.6 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.59 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.56 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.53 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.47 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.45 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.42 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.36 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.32 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.29 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.28 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.2 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.16 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.15 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.12 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.11 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.85 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.81 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.76 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.75 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.65 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.64 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.63 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.62 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.52 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.5 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.48 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.46 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.43 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.4 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.31 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.15 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.12 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.94 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.93 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.77 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.75 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.71 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.56 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.53 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.5 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.49 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.4 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.4 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.36 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.32 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.27 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.15 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.11 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.07 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.05 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.75 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.51 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.39 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.29 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.27 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.16 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.06 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.88 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.87 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.75 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.48 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.4 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.81 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.41 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.25 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.99 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.72 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.63 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.34 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.16 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.96 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.5 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.43 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.85 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.72 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.99 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.96 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.35 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.42 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.17 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.64 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.42 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 82.13 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.58 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.53 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.9 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.5 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.46 |
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-55 Score=444.17 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. +...+|+||||+|++||+++|+||||||||||+++|+|+. +
T Consensus 3 ~i~v~nlsk~y~~-------------------------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~-~ 56 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-------------------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-V 56 (242)
T ss_dssp CEEEEEEEEEEGG-------------------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-C
T ss_pred EEEEEeEEEEECC-------------------------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc-C
Confidence 4889999998852 3356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+++|+|.++|+++.. ..|+++|||||++.+||.+||+||+.|++..+ ..++++.+++++++++.+||++.
T Consensus 57 p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~ 133 (242)
T d1oxxk2 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133 (242)
T ss_dssp CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhh
Confidence 569999999998742 24678999999999999999999999987543 46788888999999999999988
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.|+++ .+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|+|++|||+. ++.++
T Consensus 134 ~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~ 207 (242)
T d1oxxk2 134 LNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAI 207 (242)
T ss_dssp TTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHH
T ss_pred hhCCh-----hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHh
Confidence 88765 589999999999999999999999999999999999999999999999765 999999999975 58899
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||++|++|++++.|+++|+.+
T Consensus 208 ~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 208 ADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-55 Score=443.81 Aligned_cols=217 Identities=27% Similarity=0.421 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~I~v~nlsk~yg---------------------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~- 57 (239)
T d1v43a3 6 EVKLENLTKRFG---------------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE- 57 (239)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred eEEEEEEEEEEC---------------------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-
Confidence 389999999873 3569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.+||+++.. ..+++||||||++.+||.+||+||+.|++..+ ..++++.+++++++++.+||++..|+++
T Consensus 58 p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (239)
T d1v43a3 58 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP 134 (239)
T ss_dssp CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT
T ss_pred CCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh
Confidence 569999999999864 45678999999999999999999999986554 4678888999999999999998888754
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|+||+|||||+|||+.++.++++.|+++.++ |+|+|++|||+. ++.++||||+
T Consensus 135 -----~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~ 208 (239)
T d1v43a3 135 -----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIA 208 (239)
T ss_dssp -----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999765 999999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++++.|+++|+.
T Consensus 209 vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 209 VMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999984
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.6e-56 Score=443.98 Aligned_cols=217 Identities=29% Similarity=0.475 Sum_probs=160.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
|+++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+.+ +
T Consensus 1 Iev~nv~k~yg---------------------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-p 52 (232)
T d2awna2 1 VQLQNVTKAWG---------------------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-I 52 (232)
T ss_dssp EEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-C
T ss_pred CEEEEEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-C
Confidence 58899999873 3569999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 150 VKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++|+|.+||+++.+ ..++.||||||++.+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+++
T Consensus 53 ~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~- 128 (232)
T d2awna2 53 TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP- 128 (232)
T ss_dssp SEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC-----------
T ss_pred CCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCCh-
Confidence 69999999999864 45678999999999999999999999987654 3456677789999999999999888765
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
++|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|+|++|||+. ++.++||||++
T Consensus 129 ----~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~v 203 (232)
T d2awna2 129 ----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVV 203 (232)
T ss_dssp ---------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 58999999999999999999999999999999999999999999999865 5999999999975 58899999999
Q ss_pred EeCCEEEEecChhHHHH
Q 044602 307 ISEGYPVYYGKARESME 323 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~~ 323 (674)
|++|++++.|+++|+.+
T Consensus 204 m~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 204 LDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEeCHHHHHh
Confidence 99999999999999854
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.1e-55 Score=439.92 Aligned_cols=217 Identities=29% Similarity=0.441 Sum_probs=197.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+..
T Consensus 3 ~i~v~nl~k~yg---------------------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~- 54 (240)
T d1g2912 3 GVRLVDVWKVFG---------------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE- 54 (240)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-
T ss_pred cEEEEeEEEEEC---------------------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-
Confidence 489999999873 3569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+++|+|.++|+++.. ..+++||||+|++.++|.+||+||+.++...+ ..++++.+++++++++.+||++
T Consensus 55 p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~ 131 (240)
T d1g2912 55 PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131 (240)
T ss_dssp CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGG
T ss_pred CCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChh
Confidence 569999999998742 13578999999999999999999999998765 4578888899999999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++++ ++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++|||+. ++.+
T Consensus 132 ~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~ 205 (240)
T d1g2912 132 LLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMT 205 (240)
T ss_dssp GTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHH
T ss_pred HhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHH
Confidence 888764 589999999999999999999999999999999999999999999999776 999999999975 5889
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||++|++|++++.|+++|+.
T Consensus 206 ~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 206 MGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-55 Score=440.75 Aligned_cols=220 Identities=23% Similarity=0.376 Sum_probs=197.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.|+++||+++|..+. ...++|+||||+|++||+++|+||||||||||+++|+|+.+
T Consensus 1 mi~v~nlsk~y~~~~-----------------------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~- 56 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT-----------------------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER- 56 (240)
T ss_dssp CEEEEEEEEEEECSS-----------------------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-
T ss_pred CEEEEeEEEEeCCCC-----------------------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-
Confidence 378999999986321 12358999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+++|+|.++|+++.. .+|+++|||||++.+++.+||+||+.+++..+ ..++++.+++++++|+.+||++.
T Consensus 57 p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~ 133 (240)
T d3dhwc1 57 PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDK 133 (240)
T ss_dssp CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTT
T ss_pred ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchh
Confidence 569999999999742 35678999999999999999999999988654 34667778899999999999988
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.|+.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++|||+. ++.++
T Consensus 134 ~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~ 207 (240)
T d3dhwc1 134 HDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRI 207 (240)
T ss_dssp TSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHH
T ss_pred hhCCh-----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHh
Confidence 87754 589999999999999999999999999999999999999999999999876 999999999975 57889
Q ss_pred cCEEEEEeCCEEEEecChhHH
Q 044602 301 FDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||++|++|++++.|+++|+
T Consensus 208 ~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 208 CDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp CSEEEEEETTEEEEEEETTTT
T ss_pred CCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.1e-54 Score=432.66 Aligned_cols=212 Identities=26% Similarity=0.436 Sum_probs=191.2
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|. ..+|+||||+|++||+++|+||||||||||+|+|+|+.. +
T Consensus 2 i~v~nlsk~y~----------------------------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-p 52 (229)
T d3d31a2 2 IEIESLSRKWK----------------------------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-P 52 (229)
T ss_dssp EEEEEEEEECS----------------------------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-C
T ss_pred EEEEEEEEEeC----------------------------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-C
Confidence 78999999773 237999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 150 VKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++|+|.++|+++.+ ..++.+|||+|++.+||.+||+||+.|+...+.. .+ .++++++++.++|.+..|+++
T Consensus 53 ~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~- 125 (229)
T d3d31a2 53 DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNP- 125 (229)
T ss_dssp SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCG-
T ss_pred CCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccc---cH---HHHHHHHHHHhcchhhHhCCh-
Confidence 69999999999864 3467899999999999999999999999876532 22 357889999999999888765
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||+. ++.++||||++
T Consensus 126 ----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~v 200 (229)
T d3d31a2 126 ----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAV 200 (229)
T ss_dssp ----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred ----hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEE
Confidence 48999999999999999999999999999999999999999999999976 5999999999975 58899999999
Q ss_pred EeCCEEEEecChhHHH
Q 044602 307 ISEGYPVYYGKARESM 322 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~ 322 (674)
|++|++++.|+++|+.
T Consensus 201 m~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 201 VMDGKLIQVGKPEEIF 216 (229)
T ss_dssp ESSSCEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.5e-54 Score=431.26 Aligned_cols=219 Identities=28% Similarity=0.496 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.+ .....+|+||||++++||+++|+|||||||||||++|+|+.+
T Consensus 1 mI~i~nlsk~y~~~-----------------------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~- 56 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMG-----------------------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK- 56 (230)
T ss_dssp CEEEEEEEEEEEET-----------------------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred CEEEEeEEEEeCCC-----------------------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-
Confidence 37899999999642 112458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+++|+|+++|+++.. .+ +++||||+|++.++|.+||+||+.++...+.....+.++..+++.++++.++|++
T Consensus 57 p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 136 (230)
T d1l2ta_ 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136 (230)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG
T ss_pred CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhh
Confidence 569999999999853 12 3579999999999999999999999987765556678888889999999999976
Q ss_pred -cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 221 -CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 221 -~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|+|++|||+. . .
T Consensus 137 ~~~~~~-----p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a 209 (230)
T d1l2ta_ 137 RFANHK-----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-A 209 (230)
T ss_dssp GGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-H
T ss_pred hhhcCC-----hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-H
Confidence 35654 4589999999999999999999999999999999999999999999999875 999999999974 3 4
Q ss_pred hhcCEEEEEeCCEEEEecCh
Q 044602 299 HMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~ 318 (674)
++||||++|++|+|++.|++
T Consensus 210 ~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 210 RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTSSEEEEEETTEEEEEEEC
T ss_pred HhCCEEEEEECCEEEEeccC
Confidence 79999999999999999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-53 Score=428.84 Aligned_cols=219 Identities=30% Similarity=0.463 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+|+|+||+|+|+. +.+.+|+||||+|++||.+||+||||||||||+++|+|++ +
T Consensus 1 eI~~~nvsf~Y~~-------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~ 54 (241)
T d2pmka1 1 DITFRNIRFRYKP-------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-I 54 (241)
T ss_dssp EEEEEEEEEESST-------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-C
T ss_pred CeEEEEEEEEeCC-------------------------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-C
Confidence 4799999998852 2356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHHHHc-CCCcc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV--QMILKEL-GLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v--~~~l~~l-gL~~~ 221 (674)
+.+|+|.+||+++.. .+|+++|||+|++.+|+. ||+|||.++.. ..+.++..+.. ..+.+.+ .++..
T Consensus 55 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~ 128 (241)
T d2pmka1 55 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREG 128 (241)
T ss_dssp CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTG
T ss_pred CCCCEEEECCEEecccchhhhhceEEEEecccccCCc-cccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcc
Confidence 569999999999863 578899999999999986 99999988632 12332222111 1112222 34667
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++.+|.. +..|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+ |+|+|++||+++. .+.|
T Consensus 129 ~~t~i~~~-g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~ 204 (241)
T d2pmka1 129 YNTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNA 204 (241)
T ss_dssp GGSBCSTT-TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTS
T ss_pred hhhhcCCC-CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH--HHhC
Confidence 78888754 467999999999999999999999999999999999999999999999865 8999999999864 5789
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|||++|++|+|++.|+++|+++
T Consensus 205 D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 205 DRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp SEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999863
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.7e-52 Score=419.55 Aligned_cols=219 Identities=28% Similarity=0.403 Sum_probs=200.0
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
|+++||+++|. .++||+||||++++||++||+||||||||||+|+|+|+++ +
T Consensus 3 I~v~nl~k~yg---------------------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-p 54 (238)
T d1vpla_ 3 VVVKDLRKRIG---------------------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-P 54 (238)
T ss_dssp EEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-C
T ss_pred EEEEeEEEEEC---------------------------CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-C
Confidence 78899998773 3679999999999999999999999999999999999884 5
Q ss_pred CccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 150 VKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
.+|+|.++|+++.+ ..++.+|||||++.+++.+||.||+.|....+ ..++.+..+.++++++.++|.+..++++
T Consensus 55 ~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (238)
T d1vpla_ 55 SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV 131 (238)
T ss_dssp SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG
T ss_pred CCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhh
Confidence 69999999999753 56789999999999999999999999988765 3456777788999999999999888876
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+ +||||||||++|||||+++|+||||||||+|||+.++.++.+.|++++++|+|||++||++. ++..+||||++
T Consensus 132 ~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~v 205 (238)
T d1vpla_ 132 S-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIAL 205 (238)
T ss_dssp G-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 5 89999999999999999999999999999999999999999999999999999999999975 58899999999
Q ss_pred EeCCEEEEecChhHHHHHH
Q 044602 307 ISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~~~f 325 (674)
|++|++++.|+++++.+.+
T Consensus 206 l~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 206 IHNGTIVETGTVEELKERY 224 (238)
T ss_dssp EETTEEEEEEEHHHHHHHT
T ss_pred EECCEEEEEcCHHHHHhcc
Confidence 9999999999999997644
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.1e-52 Score=425.22 Aligned_cols=218 Identities=25% Similarity=0.402 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.|+++||+++|. ..++|+||||++++||++||+||||||||||+|+|+|+. +
T Consensus 2 ~Lev~nl~k~yg---------------------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~-~ 53 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---------------------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-K 53 (258)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-C
T ss_pred eEEEEEEEEEEC---------------------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc-c
Confidence 389999999773 356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP-----------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~ 211 (674)
+++|+|.++|+++.. ..++++|||||++.+++.+||.||+.++.... ...++++.++++.+
T Consensus 54 p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~ 131 (258)
T d1b0ua_ 54 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALK 131 (258)
T ss_dssp CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHH
T ss_pred CCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHH
Confidence 569999999998741 24578999999999999999999999875332 23567888889999
Q ss_pred HHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 212 ILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 212 ~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
+++.++|.+.. ++. +.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++|
T Consensus 132 ~l~~~~l~~~~~~~~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vt 206 (258)
T d1b0ua_ 132 YLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 206 (258)
T ss_dssp HHHHTTCCHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHcCCchhhhccC-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEe
Confidence 99999997643 443 458999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||+. ++.++||||++|++|++++.|+++|+.
T Consensus 207 Hdl~-~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 207 HEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp SCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9975 578999999999999999999999984
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.4e-52 Score=421.14 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=190.7
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|++
T Consensus 4 d~~Lev~~l~k~yg---------------------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---------------------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp SEEEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceEEEEeeEEEEEC---------------------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999773 356999999999999999999999999999999999988
Q ss_pred CCCCccEEEECCEeCCh---h--ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCc
Q 044602 147 TDDVKGNITYNDIPYNP---A--LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-GLER 220 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~---~--~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~ 220 (674)
++++|+|.++|+++.. . .|..++|+||+..+|+.+||+||+.+++.... .++...+.++++++.+ +|.+
T Consensus 57 -~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 131 (240)
T d1ji0a_ 57 -RAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKE 131 (240)
T ss_dssp -CCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHT
T ss_pred -CCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHH
Confidence 4569999999999853 1 24469999999999999999999988764432 2233445566777766 6777
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..+++++ +|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++||++. ++.++
T Consensus 132 ~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~ 205 (240)
T d1ji0a_ 132 RLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKV 205 (240)
T ss_dssp TTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHH
T ss_pred HHhCchh-----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHh
Confidence 7777654 89999999999999999999999999999999999999999999999999999999999975 58899
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||++|++|++++.|+++|+.
T Consensus 206 ~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 206 AHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-52 Score=424.61 Aligned_cols=220 Identities=24% Similarity=0.416 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.|+|+||+|+|+.. .++.+|+||||+|++||++||+||||||||||+++|+|++.
T Consensus 11 ~I~~~nvsf~Y~~~------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~- 65 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR------------------------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ- 65 (251)
T ss_dssp CEEEEEEEECCTTS------------------------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEECCCC------------------------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-
Confidence 49999999988531 23569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY-----ARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~ 219 (674)
+.+|+|.+||+++.. .+|++++||+|++.+|+. ||+||+.++.... ....+.. ....+.++ +|+
T Consensus 66 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~--~l~ 138 (251)
T d1jj7a_ 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----PTMEEITAAAVKSGAHSFIS--GLP 138 (251)
T ss_dssp CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHH--TST
T ss_pred CCcCEEEECCEecchhhhHHHHHHhhhccccccccCc-chhhhhhhhhccc----chHHHHHHHHHHHHHHHHHH--hcc
Confidence 569999999999853 577899999999999976 9999999874321 1222111 12233344 457
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++.+++ .+.+|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++.++ |+|+|++||+++ ..
T Consensus 139 ~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~ 215 (251)
T d1jj7a_ 139 QGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LV 215 (251)
T ss_dssp TGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HH
T ss_pred ccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HH
Confidence 778888874 45689999999999999999999999999999999999999999999998764 899999999975 35
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+.||||++|++|++++.|+++|+++
T Consensus 216 ~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 216 EQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 7799999999999999999999964
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-51 Score=420.50 Aligned_cols=221 Identities=22% Similarity=0.370 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. ..++|+||||++++||+++|+||||||||||+|+|+|++ +
T Consensus 4 iL~v~nlsk~yg---------------------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~-~ 55 (254)
T d1g6ha_ 4 ILRTENIVKYFG---------------------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-K 55 (254)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-C
T ss_pred eEEEEEEEEEEC---------------------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC-c
Confidence 489999998773 356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC----------CCCCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL----------PGNMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l 213 (674)
+++|+|.++|+++.. ..++.|+|+||++.+++.+||.||+.++...+. .....+++..+++.+++
T Consensus 56 p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (254)
T d1g6ha_ 56 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135 (254)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHH
Confidence 569999999999853 234569999999999999999999998753321 11123445567889999
Q ss_pred HHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 214 KELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 214 ~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.+++.+..|++++ +|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||++|||+
T Consensus 136 ~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl 210 (254)
T d1g6ha_ 136 EFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 210 (254)
T ss_dssp HHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HhcCcchhccCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 99999998888765 8999999999999999999999999999999999999999999999998999999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
. ++.++||||++|++|++++.|+++|+.+
T Consensus 211 ~-~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 211 D-IVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp S-TTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred H-HHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 6 4789999999999999999999998754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.1e-52 Score=422.75 Aligned_cols=219 Identities=29% Similarity=0.457 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+. .+++|+||||++++||++||+||||||||||+++|+|++.
T Consensus 1 mle~knvsf~Y~~--------------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~- 53 (242)
T d1mv5a_ 1 MLSARHVDFAYDD--------------------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ- 53 (242)
T ss_dssp CEEEEEEEECSSS--------------------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred CEEEEEEEEECCC--------------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-
Confidence 3799999998742 2569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH--H-HcCCCcc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL--K-ELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l--~-~lgL~~~ 221 (674)
|.+|+|.+||++++. .+|++||||+|++.+|+. ||+||+.++... ..+..+..+..+... + ...+++.
T Consensus 54 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (242)
T d1mv5a_ 54 PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDLWQVLDLAFARSFVENMPDQ 128 (242)
T ss_dssp CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHHHHHHHHHTCTTTTTSSTTG
T ss_pred CCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheeccccc----ccchhhHHHHHHHHHhhhhhccCccc
Confidence 569999999999864 578899999999999998 999999875321 123322222111111 1 1234567
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++.+|+. ..+|||||||||+|||||+.+|+||+||||||+||+.++..+++.|+++++ |+|+|++||+++. .+.|
T Consensus 129 ~~~~i~~~-g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~ 204 (242)
T d1mv5a_ 129 LNTEVGER-GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLST--IVDA 204 (242)
T ss_dssp GGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHHH--HHHC
T ss_pred ccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH--HHhC
Confidence 78888864 457999999999999999999999999999999999999999999999974 9999999999853 4569
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|||++|++|++++.|+++|+++
T Consensus 205 D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 205 DKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp SEEEEEETTEECCCSCHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999974
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-51 Score=421.04 Aligned_cols=216 Identities=31% Similarity=0.439 Sum_probs=185.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..|+|+||+|+|+. +.+++|+||||+|++||++||+||||||||||+++|+|++
T Consensus 15 g~I~~~nvsf~Y~~-------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~- 68 (255)
T d2hyda1 15 GRIDIDHVSFQYND-------------------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY- 68 (255)
T ss_dssp CCEEEEEEEECSCS-------------------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-
T ss_pred CEEEEEEEEEEeCC-------------------------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC-
Confidence 35999999998752 2357999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL------- 216 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l------- 216 (674)
++.+|+|.+||+++.. .+|++++||+|++.+|+. ||+|||.|+.. ..+++ ++.++++..
T Consensus 69 ~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~-----~~~~~----~~~~al~~~~l~~~i~ 138 (255)
T d2hyda1 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATDE----EVVEAAKMANAHDFIM 138 (255)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHH----HHHHHHHHTTCHHHHH
T ss_pred CccccccccCCEEcccCCHHHhhheeeeeeccccCCCC-CHHHHHhccCc-----CCCHH----HHHHHHHHhCCHHHHH
Confidence 4569999999999863 578999999999999986 99999998732 12332 233334433
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
.|++..++.+|+. ..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++.
T Consensus 139 ~lp~gl~t~i~~~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~- 215 (255)
T d2hyda1 139 NLPQGYDTEVGER-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST- 215 (255)
T ss_dssp TSTTGGGCBCCGG-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-
T ss_pred hccccccchhcCC-CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-
Confidence 3467788988864 457999999999999999999999999999999999999999999999865 8999999999864
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||||++|++|++++.|+++|+++
T Consensus 216 -~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 216 -ITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp -TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 57899999999999999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.7e-51 Score=418.54 Aligned_cols=218 Identities=26% Similarity=0.389 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.|+|+||+|+|+. ..+++|+||||+|++||++||+||||||||||+++|+|++.
T Consensus 13 ~I~~~nvsf~Y~~-------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~- 66 (253)
T d3b60a1 13 DLEFRNVTFTYPG-------------------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD- 66 (253)
T ss_dssp CEEEEEEEECSSS-------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-
T ss_pred EEEEEEEEEEeCC-------------------------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-
Confidence 5999999998752 23569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR-----VQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~ 219 (674)
+.+|+|.+||+++.. .+|++++||+|++.+|+. |+++|+.++.. ...++++..+. +.+.++. ++
T Consensus 67 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~--l~ 139 (253)
T d3b60a1 67 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQIEEAARMAYAMDFINK--MD 139 (253)
T ss_dssp CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHH--ST
T ss_pred CCccEEEECCcccchhhhhhhhheEEEEeeccccCCc-chhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHh--cc
Confidence 569999999999864 578899999999999987 99999988631 12333322211 1233333 35
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..++.+++ .+.+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|+|++||+++. .+
T Consensus 140 ~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~ 215 (253)
T d3b60a1 140 NGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IE 215 (253)
T ss_dssp TGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TT
T ss_pred ccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HH
Confidence 677888875 4568999999999999999999999999999999999999999999999975 8999999999864 57
Q ss_pred hcCEEEEEeCCEEEEecChhHHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.||+|++|++|+|++.|+++|+++
T Consensus 216 ~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 216 QADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 899999999999999999999874
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.2e-51 Score=409.93 Aligned_cols=196 Identities=28% Similarity=0.506 Sum_probs=179.6
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
||||++. ||+++|+||||||||||+|+|+|+++ +++|+|.+||+++.+ ..+++||||||++.+||++||+||+.|+
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~ 94 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhh
Confidence 8999995 68999999999999999999999884 569999999999864 4567899999999999999999999997
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
.+ ..++.+.+++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|+|||||+|||+.++..
T Consensus 95 l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~ 164 (240)
T d2onka1 95 LR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp CT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred hc-----ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHH
Confidence 42 3467778889999999999998888765 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+++.|+++.++ |+|||++|||+. ++.++||||++|++|++++.|+++|+.
T Consensus 165 i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 99999999775 999999999975 588999999999999999999999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-45 Score=370.70 Aligned_cols=197 Identities=25% Similarity=0.390 Sum_probs=173.4
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.+|+||||+|++||++||+||||||||||+|+|+|+. + .+|+|.++|+++.. .++...+|++|+.......++.
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~-~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C-CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 4699999999999999999999999999999999965 4 58999999998753 3556789999997766667999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV-------DPSLLLLD 258 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~-------~P~illLD 258 (674)
+++.++... +...+.++++++.++|.+..++.+ ++|||||||||+|||+|++ +|+||+||
T Consensus 91 ~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 999876421 123456788999999998888765 4899999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|++++++|+|||++|||++ ++.++|||+++|++|++++.|+++|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999975 589999999999999999999999884
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-45 Score=381.36 Aligned_cols=196 Identities=28% Similarity=0.400 Sum_probs=161.5
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
+++||+||||+|++||++||+||||||||||+++|+|++. +++|+|.++| +++||+|++.+|+. ||+||
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~en 116 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-ASEGIIKHSG---------RVSFCSQFSWIMPG-TIKEN 116 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEECCS---------CEEEECSSCCCCSE-EHHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-CCCcEEEECC---------EEEEEeccccccCc-eeecc
Confidence 4679999999999999999999999999999999999884 5699999988 49999999999987 99999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHH---HHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQ---MILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~---~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+.|+.. .......+..+ .......+.+..++.+++ ...+|||||||||+|||||+++|+||||||||++|
T Consensus 117 i~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 117 IIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp HTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred cccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccC
Confidence 988632 12221111111 111223456677777764 34579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+.++..+++.+.+..++|+|+|++||+++ ..+.||||++|++|++++.|+++|+.+
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999998864443345899999999974 457899999999999999999999863
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.5e-43 Score=344.73 Aligned_cols=196 Identities=26% Similarity=0.417 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ ++||+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 2 ~lev~~ls~~y~----------------------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~- 52 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----------------------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK- 52 (200)
T ss_dssp EEEEEEEEEESS----------------------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeC----------------------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-
Confidence 379999998662 459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
|.+|+|.+||+++.+ .+.+++|++|+..++..+|+.|++.+....... ...+ +.+.+.++.+++.+. ++++
T Consensus 53 p~~G~I~~~g~~i~~-~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~-~~~~-- 123 (200)
T d1sgwa_ 53 PLKGEIIYNGVPITK-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDL-KKKL-- 123 (200)
T ss_dssp CSEEEEEETTEEGGG-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCT-TSBG--
T ss_pred cCCCEEEECCEehhH-hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCccc-cccc--
Confidence 569999999999864 577899999999999999999999988766522 2222 345677888887653 3344
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|+++.+++.++|+++|+. ..+||++.+|+
T Consensus 124 ---~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~ 196 (200)
T d1sgwa_ 124 ---GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLH 196 (200)
T ss_dssp ---GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGG
T ss_pred ---CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhhee
Confidence 48999999999999999999999999999999999999999999999877544444444442 25799999886
Q ss_pred C
Q 044602 309 E 309 (674)
Q Consensus 309 ~ 309 (674)
+
T Consensus 197 ~ 197 (200)
T d1sgwa_ 197 K 197 (200)
T ss_dssp G
T ss_pred e
Confidence 4
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=7.2e-17 Score=152.74 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccC--C---CCCCCCCHHHHHHHHHhhcCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD--D---VLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~--~---~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
.++|+||||||||||+++|+|.+.+ ..|.+...+.+....- ++.++..+. . .+... +..+ + .
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~-~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~--------~--~ 68 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWTEEVRDPETK-KRTGFRIITTEGKKKIFSSK-FFTS--------K--K 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEEEEEC-------CCEEEEEETTCCEEEEEET-TCCC--------S--S
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC-CcceEEECCcchHHHH-HhhhhhhhhhhHHHHHHhhh-hhhh--------h--h
Confidence 3799999999999999999998844 5899998887653221 122222111 0 00000 0000 0 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
... .. ..+. ....+|+|+++|.++++++..+|+++++|||+.. ......+.+.+.+
T Consensus 69 ~~~-------------~~----~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~ 124 (178)
T d1ye8a1 69 LVG-------------SY----GVNV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQ 124 (178)
T ss_dssp EET-------------TE----EECH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHH
T ss_pred hhh-------------hh----hcCc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHH
Confidence 000 00 0011 1125899999999999999999999999998543 3344556666666
Q ss_pred HHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 279 VAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 279 l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
+.+ .+.++|+++|+.. ....+|++..+.+|+++.-+.
T Consensus 125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred HhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 554 4899999999965 367889999999999987553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=1.9e-10 Score=117.41 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=65.3
Q ss_pred cCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 231 IKGISGGERKRTSIGYEI----LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL----~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
...+|+|||+...++..+ ..+|+++++|||-++|+|.....+.+.|+++++ +.-||++||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 457999999998877654 346789999999999999999999999999875 689999999985 5788999966
Q ss_pred --EeCC
Q 044602 307 --ISEG 310 (674)
Q Consensus 307 --L~~G 310 (674)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=4.2e-09 Score=111.45 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEI----LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL----~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|. +...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 56899999998877544 3567899999999999999999999999998766778999999974 68899998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.07 E-value=2.2e-05 Score=76.18 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 237 GERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 237 GerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
.|-+|++-....+.+..++++||+.+|=|+.....+.. .++.+.+.+..++++||.. ++..+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 34444444444455667999999999999988887755 4566777788999999984 34443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=1.4e-05 Score=78.16 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CcEEEEEecCC
Q 044602 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAKA-GRTVITTIHQP 293 (674)
Q Consensus 238 erqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~ 293 (674)
|-+|++-...-..+..++++||+.+|=|+.....+... ++.+..+ +..+|++||..
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 33444333334555679999999999999999888654 6677654 56788888874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.54 E-value=7.7e-05 Score=73.78 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=27.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
-|+++.+=+.+|+++.|.|++|+|||||+.-++
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455555458999999999999999999988776
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=1.3e-05 Score=74.28 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=30.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+++.++.+.+| +++|+|||||||||+|++|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888887 99999999999999999997433
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.03 E-value=0.00016 Score=65.54 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.|++++|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999765
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00018 Score=69.31 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT 155 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~ 155 (674)
+|+.++++|+||+|||||+|.|.|...- ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~-~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC-C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh-hccCcc
Confidence 4889999999999999999999986533 256664
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.00017 Score=66.81 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|.++.|+||||||||||.+.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999998655
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0021 Score=62.78 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHhhCCCEEEEeCCCC---C--CCHHHHHHHHHHHHHHHhC-CcEEEEEecC
Q 044602 247 EILVDPSLLLLDEPTS---G--LDSTSANKLIQVLQKVAKA-GRTVITTIHQ 292 (674)
Q Consensus 247 aL~~~P~illLDEPTs---g--LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~ 292 (674)
.-..+|+++++|--++ + =|......+++.|+.+++. |.++|++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999996543 1 2556667788888887764 8898888775
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00019 Score=64.63 Aligned_cols=23 Identities=52% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|+|++|||||||++.|...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.87 E-value=0.0078 Score=56.36 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=37.1
Q ss_pred hCCCEEEEeCCCCCC----CHHHHHHHH-HHHHHHHhCCcEEEEEecCCch--------HHHhhcCEEEEEe
Q 044602 250 VDPSLLLLDEPTSGL----DSTSANKLI-QVLQKVAKAGRTVITTIHQPSS--------RMFHMFDKLLLIS 308 (674)
Q Consensus 250 ~~P~illLDEPTsgL----D~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~--------~i~~~~D~v~~L~ 308 (674)
.+|++++.|--+.-. +.......+ ..++.+++.+.|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 379999999766533 223233333 3444444569999999886532 2445788888775
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.83 E-value=0.0077 Score=57.25 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=78.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL 196 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~ 196 (674)
+=+++|.++.|.|++|+|||||+.-++-..... ...+.|+.-+ .+..+.........
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~----------------~~~~~~is~e------~~~~~~~~~~~~~~- 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACAN----------------KERAILFAYE------ESRAQLLRNAYSWG- 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----------------TCCEEEEESS------SCHHHHHHHHHTTS-
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------------ccccceeecc------CCHHHHHHHHHHcC-
Confidence 458999999999999999999987776321111 1123444322 24444433332221
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH-HhhCCCEEEEeCCCCC---CCHHHHHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE-ILVDPSLLLLDEPTSG---LDSTSANKL 272 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a-L~~~P~illLDEPTsg---LD~~~~~~i 272 (674)
.... +. ...+.....+.. .......+. .-.|..+ --.+|++++.|--+.- .+.......
T Consensus 78 ---~~~~-------~~-~~~~~~~~~~~~-----~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~ 140 (242)
T d1tf7a2 78 ---MDFE-------EM-ERQNLLKIVCAY-----PESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQF 140 (242)
T ss_dssp ---CCHH-------HH-HHTTSEEECCCC-----GGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHH
T ss_pred ---CChH-------HH-hhcCceEEEEee-----cchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHH
Confidence 1111 11 111211111111 111222221 1112222 2247899999976543 355555555
Q ss_pred HHHHHHHHh-CCcEEEEEecCC---------chHHHhhcCEEEEEe
Q 044602 273 IQVLQKVAK-AGRTVITTIHQP---------SSRMFHMFDKLLLIS 308 (674)
Q Consensus 273 ~~~L~~l~~-~g~tvi~~~H~~---------~~~i~~~~D~v~~L~ 308 (674)
+..|.++++ .+.+++++.|.. ...+..++|-++.|+
T Consensus 141 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 141 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 555555544 589999888742 112456799998885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00029 Score=63.64 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.++.|+||+||||||+.+.|+.++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999755
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.75 E-value=0.00034 Score=63.26 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|.++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999655
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.62 E-value=0.00043 Score=62.69 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999755
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.54 E-value=0.00023 Score=68.85 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT 155 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~ 155 (674)
+|+.++++|+||+|||||+|.|.|...- ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~-~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh-hhcccc
Confidence 4788999999999999999999986532 357665
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.00018 Score=65.34 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
.+.|.||+|+|||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999998663
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.53 E-value=0.00052 Score=61.51 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g 158 (674)
.++.|.||+||||||+.+.|+..+ .+.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~----~~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc----CCCEEEeh
Confidence 478999999999999999999654 24444444
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00065 Score=64.45 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.|.++.|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999987544
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.49 E-value=0.00068 Score=61.14 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.44 E-value=0.00074 Score=59.69 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI 159 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~ 159 (674)
+++.|.|++|||||||.+.|.... .|.+.++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~----~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC----CCCEEechH
Confidence 578899999999999999876322 255555543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.43 E-value=0.00072 Score=61.22 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+|++|||||||++.|...+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999999887655
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.00088 Score=69.32 Aligned_cols=27 Identities=22% Similarity=0.587 Sum_probs=22.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444545699999999999999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.35 E-value=0.00094 Score=60.05 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++.|.|++||||||+.+.|+..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.30 E-value=0.00085 Score=62.31 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.27 E-value=0.00092 Score=60.02 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.22 E-value=0.0011 Score=59.93 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|.|++||||||+.+.|+-++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998655
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.003 Score=60.62 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
+.+++++||.-. |.......+.+.+.+-. ....+|++++++..
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccc
Confidence 567999999964 77777777766665432 24567889988753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.14 E-value=0.0012 Score=60.73 Aligned_cols=23 Identities=43% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++||-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998544
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.00082 Score=61.82 Aligned_cols=26 Identities=38% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.|.++.|.|++||||||+.+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998644
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0012 Score=58.22 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999655
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0022 Score=58.63 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+||+|++|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.99 E-value=0.0017 Score=60.19 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 044602 122 GEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..+++|+||+||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.95 E-value=0.0011 Score=61.01 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.0019 Score=58.54 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.94 E-value=0.0015 Score=59.53 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.89 E-value=0.0018 Score=61.61 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0019 Score=59.84 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0021 Score=59.23 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999888543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0026 Score=58.51 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0021 Score=59.78 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0025 Score=57.80 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0025 Score=59.12 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++.|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999644
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.68 E-value=0.017 Score=59.95 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=37.9
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 244 IGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 244 iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+..+|=.+|++++.+|.. |.+++...++ .+..|..|+.+.|-.+. ....+|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~~a--~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTNTA--VGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCSSS--HHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHHH----HHhcCCeEEEEeccCch--Hhhhhhh
Confidence 445667899999999997 6666665553 45679999999998653 4445553
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.66 E-value=0.0017 Score=59.30 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
+||+|++|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999974
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.66 E-value=0.0028 Score=57.71 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.003 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
=.++|+|++|+|||||+|.|+|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.64 E-value=0.0025 Score=59.05 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999999643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.0026 Score=59.10 Aligned_cols=21 Identities=52% Similarity=0.754 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+||||||||||.+.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.58 E-value=0.0032 Score=57.96 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|=.+.|+||+||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667889999999999999999943
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0026 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.56 E-value=0.0029 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.56 E-value=0.037 Score=52.07 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
.-.+++++||+|+||||.+-=|+-++.. ..+++++|.=|..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~----------------~g~kV~lit~Dt~----------------------- 51 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKK----------------KGFKVGLVGADVY----------------------- 51 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHH----------------TTCCEEEEECCCS-----------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCceEEEEeecc-----------------------
Confidence 3467999999999999987767744311 1245777765432
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+....++.+..-+.+|++-..... ...+.-= .+| ++..+...+-+++|.| |+|..+.
T Consensus 52 -R~ga~eQL~~~a~~l~v~~~~~~~-----~~~~~~~-~~~-a~~~~~~~~~d~IlID--TaGr~~~ 108 (211)
T d1j8yf2 52 -RPAALEQLQQLGQQIGVPVYGEPG-----EKDVVGI-AKR-GVEKFLSEKMEIIIVD--TAGRHGY 108 (211)
T ss_dssp -SHHHHHHHHHHHHHHTCCEECCTT-----CCCHHHH-HHH-HHHHHHHTTCSEEEEE--CCCSCCT
T ss_pred -ccchhHHHHHhccccCcceeeccc-----chhhhHH-HHH-HHHHhhccCCceEEEe--cCCcCcc
Confidence 112233445556666665221110 1122111 112 5555677889999999 8887543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.55 E-value=0.0021 Score=58.08 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.|.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.55 E-value=0.0035 Score=57.39 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999973
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.51 E-value=0.0028 Score=55.79 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+|++|+|||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0033 Score=57.97 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0033 Score=59.06 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLP 180 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~ 180 (674)
++||-|++|||||||.+.|+-.+... .-......+..+.+|+.+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~-----------~~~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN-----------EVDYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG-----------GSCGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh-----------ccccCCCceEEEeccccccc
Confidence 68999999999999999998655211 00112345777888876543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.45 E-value=0.003 Score=57.24 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|+|++||||||+-+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.0033 Score=57.15 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.43 E-value=0.0031 Score=58.12 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.41 E-value=0.0032 Score=55.78 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.31 E-value=0.3 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 044602 122 GEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998863
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.30 E-value=0.0042 Score=56.30 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999766
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.0022 Score=58.08 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++++|||||+|.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.0044 Score=55.81 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.|+|++||||||+-+.|+-++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999999765
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.20 E-value=0.0047 Score=57.19 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+++++|.+|||||||.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.15 E-value=0.005 Score=56.28 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999644
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.15 E-value=0.0048 Score=57.94 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0054 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344799999999999999999885
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.05 E-value=0.005 Score=55.05 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998743
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0057 Score=57.13 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.||+||||||+-+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999755
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.96 E-value=0.005 Score=59.37 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g 158 (674)
...+.+.||+|||||||.+.|++.+. .+-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh---cceEEEec
Confidence 34588999999999999999998652 23345554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.93 E-value=0.0059 Score=55.64 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.88 E-value=0.0057 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.0064 Score=55.27 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+.|+||+||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.75 E-value=0.002 Score=57.39 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.69 E-value=0.0072 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.65 E-value=0.0073 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.62 E-value=0.0089 Score=56.32 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=30.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~~g~~~ 161 (674)
++|-++-+.|.||||||||.+.|.-.+... ..-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 678899999999999999999998543110 113466776554
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.0085 Score=60.03 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~ 181 (674)
++||-|++||||||+.+.|..++.... -...+..+.+|+.+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~--------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP--------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST--------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc--------------CCCceEEEeeeeeECCc
Confidence 789999999999999999986553110 02357888899887764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.59 E-value=0.008 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.59 E-value=0.0077 Score=55.33 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999973
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.58 E-value=0.0064 Score=61.41 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=26.4
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..-++.|.-+.|.||.||||||||++|.+..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 33346667799999999999999999998763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.0082 Score=54.73 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
+.|+||+||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999954
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.0098 Score=56.00 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+=+++|+++.|.||+|||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999999987763
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.41 E-value=0.0077 Score=55.43 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998655
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0069 Score=57.41 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999866
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.26 E-value=0.0098 Score=53.15 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.01 Score=60.05 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...-.++|.||+|||||||++.|...+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.012 Score=55.49 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|-+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.013 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998655
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.09 E-value=0.011 Score=61.48 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+||+|.+|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.06 E-value=0.3 Score=45.66 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=58.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN 201 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 201 (674)
-.+++++||+|+||||.+-=|+-++.. -.++++.+.=|..
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~~~----------------~~~kV~lit~Dt~------------------------ 50 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMFVD----------------EGKSVVLAAADTF------------------------ 50 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH----------------TTCCEEEEEECTT------------------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCceEEEeeccc------------------------
Confidence 348899999999999987666754411 1245777765421
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 044602 202 RQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272 (674)
Q Consensus 202 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i 272 (674)
+....++.+...+.+|++-..... +-.--.-.+-..+.+...+-+++|.| |+|-.+.....+
T Consensus 51 R~gA~eQL~~~a~~l~i~~~~~~~-------~~d~~~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~~ 112 (213)
T d1vmaa2 51 RAAAIEQLKIWGERVGATVISHSE-------GADPAAVAFDAVAHALARNKDVVIID--TAGRLHTKKNLM 112 (213)
T ss_dssp CHHHHHHHHHHHHHHTCEEECCST-------TCCHHHHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHH
T ss_pred ccchhHHHHHHhhhcCccccccCC-------CCcHHHHHHHHHHHHHHcCCCEEEEe--ccccccchHHHH
Confidence 112234455566667665321110 11112233444556677889999999 566655554444
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.92 E-value=0.016 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+-+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999887764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.89 E-value=0.012 Score=53.06 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.88 E-value=0.017 Score=54.77 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999977554
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.83 E-value=0.014 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.|.||+|+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.013 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.016 Score=55.34 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999644
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.74 E-value=0.014 Score=52.39 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.74 E-value=0.015 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.+..+.|.||+|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.63 E-value=0.019 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.+++++||+|+||||.+-=|+-++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999876667543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.016 Score=54.97 Aligned_cols=22 Identities=50% Similarity=0.812 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+.||+|+||||+.++|+..+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcc
Confidence 6799999999999999999644
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.59 E-value=0.016 Score=55.06 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 599999999999999999986
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.015 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.53 E-value=0.017 Score=53.82 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~ 143 (674)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.47 E-value=0.018 Score=58.00 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..-.++|.||+|||||||+..|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999853
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.45 E-value=0.034 Score=50.81 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=25.4
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.||..-. .-.|.-++|.|+||+|||||.-.|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4555444 44578899999999999999877764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.42 E-value=0.017 Score=51.43 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987663
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.018 Score=52.03 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.36 E-value=0.02 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999997663
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.32 E-value=0.021 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+=+++|+++.|.||+|||||||.--++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999999987776
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.29 E-value=0.018 Score=54.67 Aligned_cols=22 Identities=50% Similarity=0.839 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+.||+|+||||+.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999744
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.28 E-value=0.018 Score=57.45 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|+.-+.+.||+|+|||+|.|+|+..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456789999999999999999754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.022 Score=51.80 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998885
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.021 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.|-||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999643
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.15 E-value=0.043 Score=50.15 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=26.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.+|..-..+ .|.-+.|.|+||+|||||.-.|.-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466666666 688999999999999999987763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.019 Score=51.19 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|.+|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.019 Score=51.23 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.025 Score=50.88 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.024 Score=50.74 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.025 Score=50.66 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 7899999999999999998754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.023 Score=51.06 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.022 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999997664
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.027 Score=52.60 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999873
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.81 E-value=0.031 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++++||+|+||||.+-=|+.++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999888777544
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.023 Score=50.97 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|++|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.025 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.65 E-value=0.031 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...+.|.||+|+||||+++.|+..+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999999655
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.64 E-value=0.026 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.63 E-value=0.017 Score=52.35 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.62 E-value=0.035 Score=49.82 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+||.++++-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999988544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.52 E-value=0.028 Score=54.14 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-+.+.||+|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999964
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.50 E-value=0.029 Score=49.76 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.028 Score=50.06 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.034 Score=53.96 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..-+.+.||+|+|||+|.+.|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457899999999999999999644
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.46 E-value=0.015 Score=57.47 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++||-|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999998654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.027 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|..|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.40 E-value=0.029 Score=58.92 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD 176 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~ 176 (674)
=+.++||+|+|||-|.+.||+.+.-| -+..++... ...|||-.|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~f-----TeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF-----TEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGG-----C----CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC---EEEeeccee-----eecceeecch
Confidence 47899999999999999999877433 244444333 2488988863
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.034 Score=50.01 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.31 E-value=0.035 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.031 Score=50.37 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.15 E-value=0.033 Score=49.59 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.12 E-value=0.03 Score=51.39 Aligned_cols=20 Identities=45% Similarity=0.629 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999997764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.032 Score=50.03 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.033 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999887753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.95 E-value=0.037 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
+.+-||+|+||||+.++++.-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 678999999999999999853
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.94 E-value=0.032 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++..-+.|.||+|+|||+|.+++++.+
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344458899999999999999999855
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.93 E-value=0.025 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.+.++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.038 Score=49.20 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.77 E-value=0.025 Score=50.85 Aligned_cols=20 Identities=45% Similarity=0.577 Sum_probs=8.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.045 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++++||+|+||||.+-=|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999877677544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.71 E-value=0.041 Score=53.03 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+.||+|+|||+|.++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999744
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.039 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.042 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.53 E-value=0.047 Score=53.81 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~ 179 (674)
++||-|+.|||||||.+.|.-.+... ......+..+..|+...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~-------------~~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK-------------YGGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-------------HGGGSCEEEEEGGGGBC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHH-------------hCCCcceEeeccCCCCC
Confidence 78999999999999998876433110 01234578888887643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.042 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999887753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.50 E-value=0.043 Score=51.33 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+++++||.- .+.......+.+.|.+..+ ...++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 4699999974 6777777777777766432 445556666644
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.044 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++++|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.028 Score=50.43 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.40 E-value=0.048 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.36 E-value=0.08 Score=47.90 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=25.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-||. ++-.-.|.=+.|.|+||+|||||.-.|.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3555 44455688999999999999999876663
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.042 Score=53.96 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=26.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+|+.++-. =-+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~~---v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQP---MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCSB---EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCCC---EEEEEEECCCCCCHHHHHHHHcCCC
Confidence 355555432 2589999999999999999999854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.27 E-value=0.034 Score=53.15 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.045 Score=52.96 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=24.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++......+.| +.+.||+|+|||+|.++++...
T Consensus 30 ~~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 30 FKAIGVKPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp HHHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence 33333333444 7899999999999999999744
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.048 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998874
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.049 Score=48.61 Aligned_cols=20 Identities=45% Similarity=0.587 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999996653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.11 E-value=0.047 Score=54.23 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
+||+|.+-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999984
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.07 E-value=0.051 Score=48.58 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999997765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.05 E-value=0.05 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.75 E-value=0.057 Score=49.09 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~ 143 (674)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999884
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.06 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997665
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.063 Score=48.69 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++|+|.+|+|||||++-+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999988664
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.29 E-value=0.061 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.27 E-value=0.056 Score=53.29 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.068 Score=47.45 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.15 E-value=0.062 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999954
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.092 Score=50.96 Aligned_cols=28 Identities=43% Similarity=0.591 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+=+++|.++-|.||+|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6789999999999999999999876664
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.074 Score=52.29 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+.+-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 5678899999999999999999998884
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.87 E-value=0.073 Score=49.96 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~ 143 (674)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999875
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.75 E-value=0.038 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
-+.|.||+|+|||||+|.++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999874
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.072 Score=48.51 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
++++|++|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.095 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44468899999999999999999644
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.40 E-value=0.084 Score=47.66 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986553
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.81 E-value=0.11 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 044602 123 EILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G 144 (674)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.11 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|=|+-||||||+++.|+-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999999655
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.41 E-value=0.11 Score=48.15 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
+||+|..++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.25 E-value=0.11 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|-+-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.99 E-value=0.06 Score=52.51 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=30.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE-EEECCEe
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN-ITYNDIP 160 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~-I~~~g~~ 160 (674)
+=++.|.++.|.||+|+|||||+-.++..... ..|. |++|.+.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~-~g~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhc-CCCEEEEEECCc
Confidence 57899999999999999999996555432211 1344 5667655
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.72 E-value=0.075 Score=51.76 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=32.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEEECCEe
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NITYNDIP 160 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~~~g~~ 160 (674)
+=++.|.++-|-||+|||||||.-.++...... .| -+++|.+.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~-g~~v~yiDtE~ 95 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEH 95 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 678999999999999999999998777533222 23 45666553
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.63 E-value=0.12 Score=52.63 Aligned_cols=38 Identities=26% Similarity=0.130 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-EECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-TYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-~~~g~~~ 161 (674)
+++..+.+.||+|+||||+.+.|++.+ .|.+ .+|+-+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~----~~~~i~in~s~~ 190 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLPLD 190 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSCTT
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEEECcch
Confidence 677899999999999999999999865 3444 3565544
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.34 E-value=0.13 Score=49.96 Aligned_cols=20 Identities=50% Similarity=0.665 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~ 143 (674)
-+||+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999984
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.16 E-value=0.14 Score=46.04 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 044602 125 LALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G 144 (674)
+.++|..|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.96 E-value=0.15 Score=45.60 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 368999999999999998763
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.50 E-value=0.16 Score=49.62 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~ 143 (674)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999999884
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.43 E-value=0.13 Score=48.33 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
++.|-|.=||||||||+-+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999998874
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.85 E-value=0.19 Score=46.91 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=57.5
Q ss_pred HhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHH----
Q 044602 248 ILVDPSLLLLDEPTSG-LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARES---- 321 (674)
Q Consensus 248 L~~~P~illLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~---- 321 (674)
.+.+.++|++|+--.= =+...+..+..++..+.+.|+.+|+++..+..++-.. -|=.--|..|-++.-.++++.
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHH
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcHHHHHH
Confidence 3567899999987442 2577788899999998888999999998865433111 111111345555544444332
Q ss_pred -HHHHHhCCCCCCCCCChhHHHHH
Q 044602 322 -MEYFSSLGFIPEIAMNPAEFLLD 344 (674)
Q Consensus 322 -~~~f~~~g~~~~~~~npad~~~~ 344 (674)
..+....|+..+. +..+|++.
T Consensus 174 L~~~a~~rgl~l~~--~v~~yl~~ 195 (213)
T d1l8qa2 174 IKEKLKEFNLELRK--EVIDYLLE 195 (213)
T ss_dssp HHHHHHHTTCCCCH--HHHHHHHH
T ss_pred HHHHHHHcCCCCCH--HHHHHHHH
Confidence 2344555655443 44555554
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.72 E-value=0.28 Score=45.03 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|.=-+||+|.-.+|||||++.|.|..
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 33348999999999999999999865
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.99 E-value=0.19 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~ 143 (674)
..+.|+|++|||||++++.+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 348999999999999987544
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.96 E-value=0.23 Score=49.43 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=25.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+-+-...++| .+.+.||+|+|||.|.+.|++..
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 334334555665 56668999999999999999754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.35 E-value=0.3 Score=47.40 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.3
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 115 ITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 115 vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
.=+.+-+|+..+|.|++|+|||||+.-++
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 34678899999999999999999977775
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.42 E-value=0.29 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47889999999999999998754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.29 Score=46.07 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
.+++++||.= .|+...+..+.+.+.+-. .+..+|+++++++.
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 4699999995 477777766666664321 35678888888654
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| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.64 E-value=0.32 Score=48.14 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHh
Confidence 344467899999999999999999654
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| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=0.33 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+.|+||+|.|||+++.-|+-+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999765
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| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=82.13 E-value=0.61 Score=41.24 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 251 DPSLLLLDEPTSGL--DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 251 ~P~illLDEPTsgL--D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+.++++|||-...+ +-....++++.|++ +.++.-+|+|-+++..++.+.+|.|.-|..
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 36899999998753 45567788888865 335889999999999999999999988763
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| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.58 E-value=0.39 Score=44.19 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..|+||+|.|||++..-|+-+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999999655
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| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.53 E-value=0.31 Score=48.04 Aligned_cols=19 Identities=47% Similarity=0.784 Sum_probs=17.1
Q ss_pred eCCeEEEEEcCCCCcHHHH
Q 044602 120 CPGEILALMGPSGSGKTTL 138 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTL 138 (674)
+.|++..+.|.||+|||||
T Consensus 12 ~~~~~alfFGLSGTGKTTL 30 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTL 30 (313)
T ss_dssp TTSCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEEccCCCCcccc
Confidence 4688999999999999996
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| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.90 E-value=0.31 Score=48.16 Aligned_cols=18 Identities=50% Similarity=0.885 Sum_probs=16.4
Q ss_pred CCeEEEEEcCCCCcHHHH
Q 044602 121 PGEILALMGPSGSGKTTL 138 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTL 138 (674)
.|++..+.|.||+|||||
T Consensus 13 ~~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp TCCEEEEEECTTSCHHHH
T ss_pred CCCEEEEEccCCCCcccc
Confidence 478899999999999996
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| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.50 E-value=0.34 Score=46.59 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.4
Q ss_pred EEEEEcCCCCcHHHHH
Q 044602 124 ILALMGPSGSGKTTLL 139 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl 139 (674)
-+.|.|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3679999999999754
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| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.46 E-value=0.37 Score=48.24 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=28.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
+.|--||+.| +..|+-+.++..+.... +.+..+|++.....
T Consensus 119 ~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNKiD 159 (341)
T d1n0ua2 119 VTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINKVD 159 (341)
T ss_dssp TCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEECHH
T ss_pred hcCceEEEEe-cccCcchhHHHHHHHHH----HcCCCeEEEEECcc
Confidence 3577777776 78899988877665543 45777776666643
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