Citrus Sinensis ID: 044604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
LSKRHTHKPERSREEEMSMATLNILLPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLLSSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccEEEEcccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccccEEEEccccccEEEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccHcccccEEEcccccHHHcccccccccccccccccccccccccHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHcccccccEcccccHHHccccccccccccccccccccEEEEEEEEEEccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcEEEEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
lskrhthkpersreEEMSMATLNIllptpstnshyfnanysqsshnvyfntnnnsnnntklhslpcshslpllsslfvqtksnpshkfshmpthlsksealsagtgcswmqnnsmlqsgegcpdlkqglvcsaipteraqvsSVQDLFAFIcsgplidkmgfskekigdSIDKWIAYNSYLCRLFQLNElyltfpqkvgfftTTYLFSCGVkikflsmcpslrmekiylpwwyigfsapqgcgktTLAFALDYLFRVTgrksatisiddfyltaEGQAKLREANRGNALlefrgnagshdlqLSVETLTAISKLTkegtkmklprydksayngrgdradpstwpeiegplTVVLYEgwmlgfkplpvevvkavdPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMReagnpgmsdeeVKDFVSRYlpayhaylptlysegpngsdpehtliieiddgrnpi
Flexible Loop (DISEMBL)
lskrhthkpersreeeMSMATLNILLPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLLSSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRgnagshdlqlSVETLTAISKltkegtkmklprydksayngrgdradpstwpeiEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLysegpngsdpehtliieiddgrnpi
Low Complexity Region (SEG)
LSKRHTHKPERSREEEMSMATLNILLPTPSTNSHYFNANYSQSSHNVYFntnnnsnnntKlhslpcshslpllsslFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI
Disordered region (IsUnstruct)
***********************IL********HYFNANY*****NVYF**********************LL************************************************CPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI*******************************WPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMR***********VKDFVSRYLPAYHAYLPTLYS***********************
Disordered Region (DISOPRED)
*********************LNILLPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPL************************************WMQN***********************T**AQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIA**********DEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNP*
Disordered Region (DISEMBL)
****************MSMATLNILLPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLLSSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI
Disordered Region (DISPRO)
*******************ATLNILLPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLLSSLFVQTK**********************GTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSKRHTHKPERSREEEMSMATLNILLPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLLSSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	476	2.2.26 [Sep-21-2011]
Q944I4	456	D-glycerate 3-kinase, chl	yes	no	0.861	0.899	0.604	1e-145
Q9UUH3	277	Uncharacterized kinase mu	yes	no	0.497	0.855	0.383	1e-35
P42938	290	Probable ATP-dependent ki	yes	no	0.510	0.837	0.372	7e-31

>sp|Q944I4|GLYK_ARATH D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2

 Score =  516 bits (1330), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/432 (60%), Positives = 320/432 (74%), Gaps = 22/432 (5%)

Query: 62  HSLPCSHSLPLLSSLFVQTKS-------------NPSHKFSHMPTHLSKSEALSAGTGCS 108
           + +PC  S P+ +S   + +S             NPS  +        ++ +  A  GCS
Sbjct: 27  YPIPCHSSNPICNSFNFKRRSFSPSSPKFNDHVVNPSSSYLSSKLSPIRTHSSFAACGCS 86

Query: 109 WMQNNSMLQSGEGCPDLKQGLVCSAIPTER-AQVSSVQDLFAFICSGPLIDKMGFSKEKI 167
           W+Q+NSM+       +      CSA+PT     VSSV DLF FICSGPL++K+G + +++
Sbjct: 87  WIQDNSMVHDYATTTN-GTSKRCSALPTTNTVDVSSVSDLFEFICSGPLVNKIGITPQRV 145

Query: 168 GDSIDKWIAYNSYLCRLFQLNELYLTFPQKV---GFFTTTYLFSCGVKIKFLSMCPSLRM 224
           G SIDKW+ Y S LCRLFQLNEL LT PQK     ++   +++ C  +I   ++  S   
Sbjct: 146 GQSIDKWLLYGSQLCRLFQLNELKLTIPQKARLYHYYIPVFIW-CEDQI---ALHNSKFK 201

Query: 225 EKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREAN 284
           +   +P   IGFSAPQGCGKTTL FALDYLF+ T +KSATIS+DDFYLTAEGQA+LR+ N
Sbjct: 202 DGDDVPPLVIGFSAPQGCGKTTLVFALDYLFKTTKKKSATISVDDFYLTAEGQAELRKKN 261

Query: 285 RGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWP 344
            GNALLE+RGNAGSHDL+LSVETL A+SKLTKEG KMK+PRY+KSAY+GRGDRAD STWP
Sbjct: 262 PGNALLEYRGNAGSHDLKLSVETLEALSKLTKEGLKMKVPRYNKSAYSGRGDRADSSTWP 321

Query: 345 EIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIK 404
           E+EGPL+V+L+EGWMLGFKPLP +VVKAVDPQLE VNKNLEAY+DAWDK+I AW+VIKI+
Sbjct: 322 EVEGPLSVILFEGWMLGFKPLPADVVKAVDPQLEVVNKNLEAYYDAWDKYIDAWVVIKIQ 381

Query: 405 DPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHT 464
           DPS VY WRLQAEIAMR+ G  GMSDEEV DFVSRYLPAY AYLPTLY+EGP+GSDP+  
Sbjct: 382 DPSYVYRWRLQAEIAMRQDGQAGMSDEEVNDFVSRYLPAYKAYLPTLYAEGPSGSDPDRV 441

Query: 465 LIIEIDDGRNPI 476
           L I+ID+ RNPI
Sbjct: 442 LAIDIDEERNPI 453

Catalyzes the concluding reaction of the photorespiratory C2 cycle, an indispensable ancillary metabolic pathway to the photosynthetic C3 cycle that enables land plants to grow in an oxygen-containing atmosphere.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 1

>sp|Q9UUH3|MUG58_SCHPO Uncharacterized kinase mug58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug58 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 16/253 (6%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           +G S PQG GK+TLA ALD             S+DDFYLT   Q +L + N  N L++ R
Sbjct: 28  LGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVELAKNNPNNPLVQHR 87

Query: 294 GNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTV- 352
           G AG+HD+      L A  K + E  ++ +P YDKS + G GDR D S W +     T  
Sbjct: 88  GLAGTHDVTFLNNVLNAFVKGSDE--EVSIPFYDKSKFGGYGDRGDESQWKKANPKTTTY 145

Query: 353 VLYEGWMLGFKPLP--VEVVKA-------VDPQLETVNKNLEAYFDAWDKFIKAWIVIKI 403
           V++EGWM+GF+PL   +  V+A       ++  L  VN+ L  Y   + K I + + ++ 
Sbjct: 146 VIFEGWMVGFEPLDSCMLSVRARSTRWQNIEGSLLWVNRKLADYQPIFQK-IDSLVELEA 204

Query: 404 KDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEH 463
           ++ + VY WRLQ E A++   + GMSDEEV +FV+ Y+P Y  YL TL ++     +P H
Sbjct: 205 QEINYVYRWRLQQEHALKARIHKGMSDEEVIEFVNHYMPQYVFYLGTLSNKV--HLNP-H 261

Query: 464 TLIIEIDDGRNPI 476
            L I +D+ R P+
Sbjct: 262 CLEIILDENRYPV 274

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|P42938|TDA10_YEAST Probable ATP-dependent kinase TDA10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TDA10 PE=1 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 134/266 (50%), Gaps = 23/266 (8%)

Query: 228 YLPWWY---------IGFSAPQGCGK--TTLAFALDYLFRVTGRKS-ATISIDDFYLTAE 275
           Y+P W+         I FS PQG GK  T++      + +  G KS    SIDDFYLT E
Sbjct: 19  YIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE 78

Query: 276 GQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTK--EGTKMKLPRYDKSAYNG 333
            Q KL E  + N LL+ RG  G+HD++L  E L  I    +  +   + LP+YDKS + G
Sbjct: 79  DQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKG 138

Query: 334 RGDRADPSTWPEIEGPLTVVLYEGWMLGFKPL--PVEVVKAVDPQLETVNKNLEAYFD-A 390
            GDR    T  +I+ P+ + + EGW LGF P+   +E    +   +  VN  L  Y D  
Sbjct: 139 EGDRC--PTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLL 196

Query: 391 W-DKFIKAW-IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYL 448
           W +  IK+  IV    + + VY WRLQ E  +      GM+DE+V  FV RY+P+Y  YL
Sbjct: 197 WRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYL 256

Query: 449 PTLYSEGPNGSDPEHTLIIEIDDGRN 474
                    GS    TL + ID  RN
Sbjct: 257 NDFVRSESLGSIA--TLTLGIDSNRN 280

ATP-dependent kinase whose specificity is not yet known.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
255552979	463	D-glycerate 3-kinase, chloroplast precur	0.861	0.885	0.684	1e-162
297743328	385	unnamed protein product [Vitis vinifera]	0.804	0.994	0.721	1e-158
449524710	441	PREDICTED: D-glycerate 3-kinase, chlorop	0.880	0.950	0.655	1e-157
449436088	441	PREDICTED: D-glycerate 3-kinase, chlorop	0.880	0.950	0.655	1e-157
225442733	373	PREDICTED: D-glycerate 3-kinase, chlorop	0.777	0.991	0.736	1e-156
147815555	390	hypothetical protein VITISV_010213 [Viti	0.777	0.948	0.733	1e-155
357455047	430	D-glycerate 3-kinase [Medicago truncatul	0.787	0.872	0.700	1e-154
388499320	429	unknown [Medicago truncatula]	0.787	0.874	0.695	1e-153
363814390	438	uncharacterized protein LOC100806896 [Gl	0.863	0.938	0.651	1e-152
356550573	434	PREDICTED: D-glycerate 3-kinase, chlorop	0.897	0.983	0.606	1e-148

>gi|255552979|ref|XP_002517532.1| D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis] gi|223543164|gb|EEF44696.1| D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/425 (68%), Positives = 334/425 (78%), Gaps = 15/425 (3%)

Query: 57  NNTKLHSLPCS-HSLPLLSSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSM 115
           +N KL +L CS H    LS   +     PS K SHMPTH SKS     G+  SWM ++S 
Sbjct: 46  HNYKLQALSCSYHHSSSLSRQALSKSHYPSSKCSHMPTHFSKS-----GSEYSWMLDDSK 100

Query: 116 LQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWI 175
            Q          G + S  P+  AQVSSV+DL+ FICSGPLI K+G + EKI DSIDKWI
Sbjct: 101 HQLSTSTNKWTHGRLHSVFPSSPAQVSSVEDLYEFICSGPLISKLGLTSEKIADSIDKWI 160

Query: 176 AYNSYLCRLFQLNELYLTFPQKV---GFFTTTYLFSCGVKI-KFLSMCPSLRMEKIYLPW 231
           +Y  +LCRLFQLNELYLT PQK     ++   +++ C  KI K++S       +   +P 
Sbjct: 161 SYGLHLCRLFQLNELYLTVPQKARIYHYYIPVFIW-CEDKISKYVSQF----KDGEDIPP 215

Query: 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLE 291
             IGFSAPQGCGKTTL FALDYLFRVTGRKSAT+SIDDFYLTAEGQAKLR  N GN LLE
Sbjct: 216 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAKLRGENSGNELLE 275

Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLT 351
           FRGNAGSHDL  S+ETLTA+SKLTKEG KMKLPRYDKSAY+GRGDRADPS WPE+EGPLT
Sbjct: 276 FRGNAGSHDLSFSIETLTALSKLTKEGIKMKLPRYDKSAYSGRGDRADPSKWPEVEGPLT 335

Query: 352 VVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYE 411
           V+L+EGWMLGFKPLP++VVKAVDPQLETVNKNLEAY+DAWDKFIKAW+VIKI+DPSCVY+
Sbjct: 336 VILFEGWMLGFKPLPMQVVKAVDPQLETVNKNLEAYYDAWDKFIKAWVVIKIQDPSCVYQ 395

Query: 412 WRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDD 471
           WRLQAEIAMREAG PGM+DEEVKDFVSRYLPAY AYLPTLY+EGP+GSDPE+ L++EID+
Sbjct: 396 WRLQAEIAMREAGLPGMTDEEVKDFVSRYLPAYKAYLPTLYAEGPSGSDPENVLLVEIDE 455

Query: 472 GRNPI 476
            RNPI
Sbjct: 456 ARNPI 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743328|emb|CBI36195.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/388 (72%), Positives = 309/388 (79%), Gaps = 5/388 (1%)

Query: 91  MPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAF 150
           MPT+ S       G G SWMQ  SM          KQG + SA+P   A+VSSVQDLF F
Sbjct: 1   MPTYSSNPGIFPMGHGSSWMQEKSMCCDTNANNGRKQGPLYSALPKTPAEVSSVQDLFEF 60

Query: 151 ICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFF--TTTYLFS 208
           ICSGPL+DK+G +KE + +SIDKW+AY SYL RLFQLNELYLT PQK  F+       F 
Sbjct: 61  ICSGPLMDKLGLTKEMVAESIDKWLAYGSYLSRLFQLNELYLTIPQKARFYHYYIPVFFW 120

Query: 209 CGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID 268
           C  +I   S   S+  +   +P   IGFSAPQGCGKTTL FAL++LF VTGRK+ATISID
Sbjct: 121 CEDQI---SQHRSMYKDGDEIPPLVIGFSAPQGCGKTTLVFALNHLFNVTGRKTATISID 177

Query: 269 DFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDK 328
           DFYLTAEGQAKLRE N GNALLE RGNAGSHDL LS+ETLTAISKLTKEG KMKLPRYDK
Sbjct: 178 DFYLTAEGQAKLREENPGNALLELRGNAGSHDLSLSIETLTAISKLTKEGMKMKLPRYDK 237

Query: 329 SAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF 388
           SAY G+GDRADPSTWPE+EGPLT VL+EGWMLGFKPLP E VK+VDPQLETVNKNLEAY+
Sbjct: 238 SAYKGKGDRADPSTWPEVEGPLTAVLFEGWMLGFKPLPAEFVKSVDPQLETVNKNLEAYY 297

Query: 389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYL 448
           DAWDKFIK WIVIKIKDPSCVYEWRLQAEIAMR  G PGMSDEEV+DFVSRYLPAY+AYL
Sbjct: 298 DAWDKFIKVWIVIKIKDPSCVYEWRLQAEIAMRAEGKPGMSDEEVQDFVSRYLPAYNAYL 357

Query: 449 PTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
           PTLYSEGPNGSD +  L+IEID+GRNP 
Sbjct: 358 PTLYSEGPNGSDLKRLLVIEIDEGRNPF 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524710|ref|XP_004169364.1| PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/432 (65%), Positives = 331/432 (76%), Gaps = 13/432 (3%)

Query: 49  FNTNNNSNNNTKLHSLP-CSHSLPLLSSLFVQTKSNPS-HKFSHMPTHLSKSEALSAGTG 106
           F +N+N     K HS P   H     SS F   K+N S  +  ++ THL KS     G G
Sbjct: 16  FCSNSNGVGFYKFHSSPYSHHVSVSSSSSFPMAKTNQSTSRLCYLQTHLPKS-----GNG 70

Query: 107 CSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEK 166
           CSW+Q+NS+  +     +  +G +C ++PT+ AQVS+V+DLF FICSGPLI+K+G S E 
Sbjct: 71  CSWIQDNSLFHNVSAS-ECYRGSICYSLPTKPAQVSTVEDLFEFICSGPLIEKLGLSPES 129

Query: 167 IGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFF--TTTYLFSCGVKIKFLSMCPSLRM 224
           + D+IDKW+AY SYLCRLF+ NE+ LT PQK  F+       F C  +I   S   S   
Sbjct: 130 VADAIDKWLAYGSYLCRLFKANEMELTIPQKARFYHYYIPVFFWCEDQI---SQHQSTFE 186

Query: 225 EKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREAN 284
           E   +P   IGFSAPQGCGKTTL +AL+YLF VTGRKSA +SIDDFYLTAEGQA+LRE N
Sbjct: 187 EGEEIPPLVIGFSAPQGCGKTTLVYALNYLFEVTGRKSAMLSIDDFYLTAEGQAQLRERN 246

Query: 285 RGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWP 344
            GNALLEFRGNAGSHDL+LSVETLTA+SKLTKEG KMKLPRYDKSAY+GRGDRADPSTWP
Sbjct: 247 PGNALLEFRGNAGSHDLELSVETLTAVSKLTKEGLKMKLPRYDKSAYSGRGDRADPSTWP 306

Query: 345 EIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIK 404
           E+EGPLTVVL+EGWMLGFKPLP E V AVDPQLE VN N++ Y+DAWDK+IKAWIVIKI 
Sbjct: 307 EVEGPLTVVLFEGWMLGFKPLPTEAVTAVDPQLEIVNNNMKVYYDAWDKYIKAWIVIKIN 366

Query: 405 DPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHT 464
           DPSCVY WRLQAEIAMREAG PGM+DEEV+DFVSRYLPAY AYLP LYSEGP+GSDP+  
Sbjct: 367 DPSCVYYWRLQAEIAMREAGKPGMTDEEVRDFVSRYLPAYKAYLPVLYSEGPSGSDPKRL 426

Query: 465 LIIEIDDGRNPI 476
           L++EID+ RNPI
Sbjct: 427 LVVEIDEERNPI 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436088|ref|XP_004135826.1| PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Cucumis sativus]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/432 (65%), Positives = 331/432 (76%), Gaps = 13/432 (3%)

Query: 49  FNTNNNSNNNTKLHSLP-CSHSLPLLSSLFVQTKSNPS-HKFSHMPTHLSKSEALSAGTG 106
           F +N+N     K HS P   H     SS F   K+N S  +  ++ THL KS     G G
Sbjct: 16  FCSNSNGVGFYKFHSSPYSHHVSVSSSSSFPMAKTNQSTSRLCYLQTHLPKS-----GNG 70

Query: 107 CSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEK 166
           CSW+Q+NS+  +     +  +G +C ++PT+ AQVS+V+DLF FICSGPLI+K+G S E 
Sbjct: 71  CSWIQDNSLFHNVSAS-ECYRGSICYSLPTKPAQVSTVEDLFEFICSGPLIEKLGLSPES 129

Query: 167 IGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFF--TTTYLFSCGVKIKFLSMCPSLRM 224
           + D+IDKW+AY SYLCRLF+ NE+ LT PQK  F+       F C  +I   S   S   
Sbjct: 130 VADAIDKWLAYGSYLCRLFKANEMELTIPQKARFYHYYIPVFFWCEDQI---SQHQSSFK 186

Query: 225 EKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREAN 284
           E   +P   IGFSAPQGCGKTTL +AL+YLF VTGRKSA +SIDDFYLTAEGQA+LRE N
Sbjct: 187 EGEEIPPLVIGFSAPQGCGKTTLVYALNYLFEVTGRKSAMLSIDDFYLTAEGQAQLRERN 246

Query: 285 RGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWP 344
            GNALLEFRGNAGSHDL+LSVETLTA+SKLTKEG KMKLPRYDKSAY+GRGDRADPSTWP
Sbjct: 247 PGNALLEFRGNAGSHDLELSVETLTAVSKLTKEGLKMKLPRYDKSAYSGRGDRADPSTWP 306

Query: 345 EIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIK 404
           E+EGPLTVVL+EGWMLGFKPLP E V AVDPQLE VN N++ Y+DAWDK+IKAWIVIKI 
Sbjct: 307 EVEGPLTVVLFEGWMLGFKPLPTEAVTAVDPQLEIVNNNMKVYYDAWDKYIKAWIVIKIN 366

Query: 405 DPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHT 464
           DPSCVY WRLQAEIAMREAG PGM+DEEV+DFVSRYLPAY AYLP LYSEGP+GSDP+  
Sbjct: 367 DPSCVYYWRLQAEIAMREAGKPGMTDEEVRDFVSRYLPAYKAYLPVLYSEGPSGSDPKRL 426

Query: 465 LIIEIDDGRNPI 476
           L++EID+ RNPI
Sbjct: 427 LVVEIDEERNPI 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442733|ref|XP_002284946.1| PREDICTED: D-glycerate 3-kinase, chloroplastic [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/375 (73%), Positives = 304/375 (81%), Gaps = 5/375 (1%)

Query: 104 GTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFS 163
           G G SWMQ  SM          KQG + SA+P   A+VSSVQDLF FICSGPL+DK+G +
Sbjct: 2   GHGSSWMQEKSMCCDTNANNGRKQGPLYSALPKTPAEVSSVQDLFEFICSGPLMDKLGLT 61

Query: 164 KEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFF--TTTYLFSCGVKIKFLSMCPS 221
           KE + +SIDKW+AY SYL RLFQLNELYLT PQK  F+       F C  +I   S   S
Sbjct: 62  KEMVAESIDKWLAYGSYLSRLFQLNELYLTIPQKARFYHYYIPVFFWCEDQI---SQHRS 118

Query: 222 LRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLR 281
           +  +   +P   IGFSAPQGCGKTTL FAL++LF VTGRK+ATISIDDFYLTAEGQAKLR
Sbjct: 119 MYKDGDEIPPLVIGFSAPQGCGKTTLVFALNHLFNVTGRKTATISIDDFYLTAEGQAKLR 178

Query: 282 EANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPS 341
           E N GNALLE RGNAGSHDL LS+ETLTAISKLTKEG KMKLPRYDKSAY G+GDRADPS
Sbjct: 179 EENPGNALLELRGNAGSHDLSLSIETLTAISKLTKEGMKMKLPRYDKSAYKGKGDRADPS 238

Query: 342 TWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVI 401
           TWPE+EGPLT VL+EGWMLGFKPLP E VK+VDPQLETVNKNLEAY+DAWDKFIK WIVI
Sbjct: 239 TWPEVEGPLTAVLFEGWMLGFKPLPAEFVKSVDPQLETVNKNLEAYYDAWDKFIKVWIVI 298

Query: 402 KIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDP 461
           KIKDPSCVYEWRLQAEIAMR  G PGMSDEEV+DFVSRYLPAY+AYLPTLYSEGPNGSD 
Sbjct: 299 KIKDPSCVYEWRLQAEIAMRAEGKPGMSDEEVQDFVSRYLPAYNAYLPTLYSEGPNGSDL 358

Query: 462 EHTLIIEIDDGRNPI 476
           +  L+IEID+GRNP 
Sbjct: 359 KRLLVIEIDEGRNPF 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815555|emb|CAN70526.1| hypothetical protein VITISV_010213 [Vitis vinifera]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/375 (73%), Positives = 303/375 (80%), Gaps = 5/375 (1%)

Query: 104 GTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFS 163
           G G SWMQ  SM           QG + SA+P   A+VSSVQDLF FICSGPL+DK+G +
Sbjct: 19  GHGSSWMQEKSMCCDTNANNGRXQGPLYSALPKTPAEVSSVQDLFEFICSGPLMDKLGLT 78

Query: 164 KEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVGFF--TTTYLFSCGVKIKFLSMCPS 221
           KE + +SIDKW+AY SYL RLFQLNELYLT PQK  F+       F C  +I   S   S
Sbjct: 79  KEMVAESIDKWLAYGSYLSRLFQLNELYLTIPQKARFYHYYIPVFFWCEDQI---SQHRS 135

Query: 222 LRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLR 281
           +  +   +P   IGFSAPQGCGKTTL FAL++LF VTGRK+ATISIDDFYLTAEGQAKLR
Sbjct: 136 MYKDGDEIPPLVIGFSAPQGCGKTTLVFALNHLFNVTGRKTATISIDDFYLTAEGQAKLR 195

Query: 282 EANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPS 341
           E N GNALLE RGNAGSHDL LS+ETLTAISKLTKEG KMKLPRYDKSAY G+GDRADPS
Sbjct: 196 EENPGNALLELRGNAGSHDLSLSIETLTAISKLTKEGMKMKLPRYDKSAYKGKGDRADPS 255

Query: 342 TWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVI 401
           TWPE+EGPLT VL+EGWMLGFKPLP E VK+VDPQLETVNKNLEAY+DAWDKFIK WIVI
Sbjct: 256 TWPEVEGPLTAVLFEGWMLGFKPLPAEFVKSVDPQLETVNKNLEAYYDAWDKFIKVWIVI 315

Query: 402 KIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDP 461
           KIKDPSCVYEWRLQAEIAMR  G PGMSDEEV+DFVSRYLPAY+AYLPTLYSEGPNGSD 
Sbjct: 316 KIKDPSCVYEWRLQAEIAMRAEGKPGMSDEEVQDFVSRYLPAYNAYLPTLYSEGPNGSDX 375

Query: 462 EHTLIIEIDDGRNPI 476
           +  L+IEID+GRNP 
Sbjct: 376 KRLLVIEIDEGRNPF 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455047|ref|XP_003597804.1| D-glycerate 3-kinase [Medicago truncatula] gi|355486852|gb|AES68055.1| D-glycerate 3-kinase [Medicago truncatula]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/391 (70%), Positives = 321/391 (82%), Gaps = 16/391 (4%)

Query: 89  SHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLF 148
           +H+ TH SKS     G G SW+Q++S   S       K+G V S  P+  AQVSSVQDL+
Sbjct: 50  NHVHTHFSKS-----GNGSSWLQSSSTADSIAH----KKGPVYSVFPSSPAQVSSVQDLY 100

Query: 149 AFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKV---GFFTTTY 205
            FICSGPL+ K+G + EK+ +SIDKW++Y   LCRLFQLNEL+LT PQKV    ++   +
Sbjct: 101 EFICSGPLLYKIGLTPEKVAESIDKWLSYGRQLCRLFQLNELFLTEPQKVRLYHYYIPVF 160

Query: 206 LFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265
           L+ C  +I   +   +   +K  +P   IGFSAPQGCGKTTL FALDYLF++ GRKSATI
Sbjct: 161 LW-CESEI---AQHQAKFKDKEDIPPLVIGFSAPQGCGKTTLVFALDYLFQMIGRKSATI 216

Query: 266 SIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPR 325
           SIDDFYLTAEGQ KLREAN GNALLE+RGNAGSHDL  SVETLTA++K+++EGTKMKLPR
Sbjct: 217 SIDDFYLTAEGQNKLREANPGNALLEYRGNAGSHDLPFSVETLTALTKMSREGTKMKLPR 276

Query: 326 YDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLE 385
           YDKSA+ GRGDRADPSTWPEIEGPLTVVL+EGWMLGFKPLPVE VKAVDPQLE VNKNL+
Sbjct: 277 YDKSAFGGRGDRADPSTWPEIEGPLTVVLFEGWMLGFKPLPVEAVKAVDPQLEIVNKNLK 336

Query: 386 AYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYH 445
           AY+DAWDK+I++WIVIKIKDPSCVY+WRLQAEIAMREAGNPGMSD+EV+DFVSRYLPAY+
Sbjct: 337 AYYDAWDKYIQSWIVIKIKDPSCVYQWRLQAEIAMREAGNPGMSDDEVRDFVSRYLPAYN 396

Query: 446 AYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
           AYLPTLYSEGP+GSDP+H L IEID+ RNPI
Sbjct: 397 AYLPTLYSEGPSGSDPQHLLNIEIDEKRNPI 427

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499320|gb|AFK37726.1| unknown [Medicago truncatula]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/391 (69%), Positives = 320/391 (81%), Gaps = 16/391 (4%)

Query: 89  SHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLF 148
           +H+ TH SKS     G G SW+Q++S   S       K+G V S  P+  AQVSSVQDL+
Sbjct: 49  NHVHTHFSKS-----GNGSSWLQSSSTADSIAH----KKGPVYSVFPSSPAQVSSVQDLY 99

Query: 149 AFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKV---GFFTTTY 205
            FICSGPL+ K+G + EK+ +SIDKW++Y   LCRLFQLNEL+LT PQKV    ++   +
Sbjct: 100 EFICSGPLLYKIGLTPEKVAESIDKWLSYGRQLCRLFQLNELFLTEPQKVRLYHYYIPVF 159

Query: 206 LFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI 265
           L+ C  +I   +   +   +K  +P   IGFSAPQGCGKTTL FAL+YLF++ GRKSATI
Sbjct: 160 LW-CESEI---AQHQAKFKDKEDIPPLVIGFSAPQGCGKTTLVFALEYLFQMIGRKSATI 215

Query: 266 SIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPR 325
           SIDDFYLTAEGQ KLREAN GNAL E+RGNAGSHDL  SVETLTA++K+++EGTKMKLPR
Sbjct: 216 SIDDFYLTAEGQNKLREANPGNALPEYRGNAGSHDLPFSVETLTALTKMSREGTKMKLPR 275

Query: 326 YDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLE 385
           YDKSA+ GRGDRADPSTWPEIEGPLTVVL+EGWMLGFKPLPVE VKAVDPQLE VNKNL+
Sbjct: 276 YDKSAFGGRGDRADPSTWPEIEGPLTVVLFEGWMLGFKPLPVEAVKAVDPQLEIVNKNLK 335

Query: 386 AYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYH 445
           AY+DAWDK+I++WIVIKIKDPSCVY+WRLQAEIAMREAGNPGMSD+EV+DFVSRYLPAY+
Sbjct: 336 AYYDAWDKYIQSWIVIKIKDPSCVYQWRLQAEIAMREAGNPGMSDDEVRDFVSRYLPAYN 395

Query: 446 AYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
           AYLPTLYSEGP+GSDP+H L IEID+ RNPI
Sbjct: 396 AYLPTLYSEGPSGSDPQHLLNIEIDEKRNPI 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814390|ref|NP_001242834.1| uncharacterized protein LOC100806896 [Glycine max] gi|255639590|gb|ACU20089.1| unknown [Glycine max]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/427 (65%), Positives = 335/427 (78%), Gaps = 16/427 (3%)

Query: 53  NNSNNNTKLHSLPCSHSLPLLSSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQN 112
           +N+NNN  +++    +S    S L + + S      S + T+ SKS + S     SW+QN
Sbjct: 22  SNTNNNNVVYAYHNHNSNSNNSKLHLFSNSRQFSVLSQLSTNSSKSGSGS-----SWLQN 76

Query: 113 NSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSID 172
           +S++   E     ++  + S  PT+ AQVSSV+DL+ FICSGPL+DK+G ++E++ +SID
Sbjct: 77  SSLVAGIE----YRKRPLYSVFPTKPAQVSSVEDLYEFICSGPLLDKIGITQEQVAESID 132

Query: 173 KWIAYNSYLCRLFQLNELYLTFPQKVG---FFTTTYLFSCGVKIKFLSMCPSLRMEKIYL 229
            W+ Y  YLCRLFQLNELYLT PQK     ++   +L+ C  +I   +   S   +   +
Sbjct: 133 NWLLYGRYLCRLFQLNELYLTEPQKARIYHYYVPVFLW-CEQQI---AEHQSKFKDGEDI 188

Query: 230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNAL 289
           P   IGFSAPQGCGKTTL FALDYLF V GRKSAT+SIDDFYLTAEGQ KLREAN GNAL
Sbjct: 189 PPLVIGFSAPQGCGKTTLVFALDYLFEVIGRKSATVSIDDFYLTAEGQNKLREANPGNAL 248

Query: 290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGP 349
           LE RGNAGSHDL LSVETL A++KLT+EG KMKLPRYDKSA+NGRGDRADPS WPE+EGP
Sbjct: 249 LELRGNAGSHDLALSVETLLALTKLTREGMKMKLPRYDKSAFNGRGDRADPSRWPEVEGP 308

Query: 350 LTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCV 409
           +TVVL+EGWMLGFKPLPVE VK VDPQLETVNKNLEAY+DAWDK+IK+WIVIKIKDP+CV
Sbjct: 309 MTVVLFEGWMLGFKPLPVEAVKVVDPQLETVNKNLEAYYDAWDKYIKSWIVIKIKDPNCV 368

Query: 410 YEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEI 469
           ++WRLQAEIAMREAGNPGM+D+EV+DFVSRYLPAY+AYLPTLYSEGPNGSDP+H L IEI
Sbjct: 369 FQWRLQAEIAMREAGNPGMTDDEVRDFVSRYLPAYYAYLPTLYSEGPNGSDPQHLLTIEI 428

Query: 470 DDGRNPI 476
           D+GRNPI
Sbjct: 429 DEGRNPI 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550573|ref|XP_003543660.1| PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Glycine max]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/462 (60%), Positives = 342/462 (74%), Gaps = 35/462 (7%)

Query: 19  MATLNIL-LPTPSTNSHYFNANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLLSSLF 77
           MATLN+   P   T S +  +N + +++ VY   N+N   N+KLH    S    +LS L 
Sbjct: 1   MATLNLFSQPWQPTISPFCCSNTNNNNNVVYAYHNHN---NSKLHFFSNSRQFSVLSQL- 56

Query: 78  VQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTE 137
                               + +  + +G S +QN+S +   E     ++  + S  PT+
Sbjct: 57  -------------------STNSSKSVSGSSGLQNSSFVSGIE----YRKRPLYSVFPTK 93

Query: 138 RAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQK 197
            AQVSSV+DL+ FICSGPL+DK+G ++E++ +SID W+ Y  YLCRLFQLNEL+LT PQK
Sbjct: 94  PAQVSSVEDLYEFICSGPLLDKIGITQEQVAESIDNWLLYGRYLCRLFQLNELFLTEPQK 153

Query: 198 V---GFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYL 254
                ++   +L+ C  +I   +   S   +   +P   IGFSAPQGCGKTTL FALDYL
Sbjct: 154 ARIYHYYVPVFLW-CEQQI---TEHQSKFKDGEDIPPLVIGFSAPQGCGKTTLVFALDYL 209

Query: 255 FRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKL 314
           F V GRKSAT+SIDDFYL AEGQ KLREAN GNALLE RGNAGSHDL  SVETLTA++KL
Sbjct: 210 FEVIGRKSATVSIDDFYLMAEGQNKLREANPGNALLELRGNAGSHDLAFSVETLTALTKL 269

Query: 315 TKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVD 374
           T+EG K+KLPRYDKSA+NGRGDRADPSTW E+EGPLTVVL+EGWMLGFKPLPV+ VK VD
Sbjct: 270 TREGMKLKLPRYDKSAFNGRGDRADPSTWSEVEGPLTVVLFEGWMLGFKPLPVDAVKVVD 329

Query: 375 PQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVK 434
           PQLETVNKNLEAY+DAWDK+IK+WIVIKIK+P+CV++WRLQAEIAMREAG PGM+D+EV+
Sbjct: 330 PQLETVNKNLEAYYDAWDKYIKSWIVIKIKNPNCVFQWRLQAEIAMREAGKPGMTDDEVR 389

Query: 435 DFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
           DFVSRYLPAY+AYLPTLYSEGPNGSDP+H L IEID+GRNPI
Sbjct: 390 DFVSRYLPAYYAYLPTLYSEGPNGSDPQHLLTIEIDEGRNPI 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2034260	456	AT1G80380 [Arabidopsis thalian	0.813	0.848	0.645	4.2e-134
POMBASE|SPAC630.09c	277	mug58 "GLYK family kinase of u	0.497	0.855	0.383	7.2e-36
SGD|S000003437	290	TDA10 "ATP-binding protein of	0.5	0.820	0.384	9.8e-32
ASPGD|ASPL0000066413	321	AN7108 [Emericella nidulans (t	0.289	0.429	0.364	2e-30
UNIPROTKB|Q608T1	288	MCA1408 "Putative uncharacteri	0.457	0.756	0.327	4.7e-22
CGD|CAL0004639	334	orf19.7345 [Candida albicans (	0.231	0.329	0.349	2.3e-17
UNIPROTKB|Q5A3W4	334	CaO19.7345 "Putative uncharact	0.231	0.329	0.349	2.3e-17
UNIPROTKB|Q489I5	288	CPS_0521 "Putative uncharacter	0.487	0.805	0.275	2.7e-17
TIGR_CMR|CPS_0521	288	CPS_0521 "conserved hypothetic	0.487	0.805	0.275	2.7e-17
UNIPROTKB|Q489J7	293	CPS_0509 "Putative uncharacter	0.401	0.651	0.283	4.5e-17

TAIR|locus:2034260 AT1G80380 [Arabidopsis thaliana (taxid:3702)]

 Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
 Identities = 258/400 (64%), Positives = 313/400 (78%)

Query:    83 NPSHKFSHMPTHLS--KSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERA- 139
             NPS   S++ + LS  ++ +  A  GCSW+Q+NSM+       +      CSA+PT    
Sbjct:    61 NPSS--SYLSSKLSPIRTHSSFAACGCSWIQDNSMVHDYATTTN-GTSKRCSALPTTNTV 117

Query:   140 QVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVG 199
              VSSV DLF FICSGPL++K+G + +++G SIDKW+ Y S LCRLFQLNEL LT PQK  
Sbjct:   118 DVSSVSDLFEFICSGPLVNKIGITPQRVGQSIDKWLLYGSQLCRLFQLNELKLTIPQKAR 177

Query:   200 ---FFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFR 256
                ++   +++ C  +I   ++  S   +   +P   IGFSAPQGCGKTTL FALDYLF+
Sbjct:   178 LYHYYIPVFIW-CEDQI---ALHNSKFKDGDDVPPLVIGFSAPQGCGKTTLVFALDYLFK 233

Query:   257 VTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTK 316
              T +KSATIS+DDFYLTAEGQA+LR+ N GNALLE+RGNAGSHDL+LSVETL A+SKLTK
Sbjct:   234 TTKKKSATISVDDFYLTAEGQAELRKKNPGNALLEYRGNAGSHDLKLSVETLEALSKLTK 293

Query:   317 EGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQ 376
             EG KMK+PRY+KSAY+GRGDRAD STWPE+EGPL+V+L+EGWMLGFKPLP +VVKAVDPQ
Sbjct:   294 EGLKMKVPRYNKSAYSGRGDRADSSTWPEVEGPLSVILFEGWMLGFKPLPADVVKAVDPQ 353

Query:   377 LETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDF 436
             LE VNKNLEAY+DAWDK+I AW+VIKI+DPS VY WRLQAEIAMR+ G  GMSDEEV DF
Sbjct:   354 LEVVNKNLEAYYDAWDKYIDAWVVIKIQDPSYVYRWRLQAEIAMRQDGQAGMSDEEVNDF 413

Query:   437 VSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
             VSRYLPAY AYLPTLY+EGP+GSDP+  L I+ID+ RNPI
Sbjct:   414 VSRYLPAYKAYLPTLYAEGPSGSDPDRVLAIDIDEERNPI 453

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0008887 "glycerate kinase activity" evidence=IDA

GO:0009853 "photorespiration" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

POMBASE|SPAC630.09c mug58 "GLYK family kinase of unknown specificity (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 97/253 (38%), Positives = 141/253 (55%)

Query:   234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
             +G S PQG GK+TLA ALD             S+DDFYLT   Q +L + N  N L++ R
Sbjct:    28 LGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVELAKNNPNNPLVQHR 87

Query:   294 GNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTV- 352
             G AG+HD+      L A  K + E  ++ +P YDKS + G GDR D S W +     T  
Sbjct:    88 GLAGTHDVTFLNNVLNAFVKGSDE--EVSIPFYDKSKFGGYGDRGDESQWKKANPKTTTY 145

Query:   353 VLYEGWMLGFKPLP--VEVVKA-------VDPQLETVNKNLEAYFDAWDKFIKAWIVIKI 403
             V++EGWM+GF+PL   +  V+A       ++  L  VN+ L  Y   + K I + + ++ 
Sbjct:   146 VIFEGWMVGFEPLDSCMLSVRARSTRWQNIEGSLLWVNRKLADYQPIFQK-IDSLVELEA 204

Query:   404 KDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEH 463
             ++ + VY WRLQ E A++   + GMSDEEV +FV+ Y+P Y  YL TL ++     +P H
Sbjct:   205 QEINYVYRWRLQQEHALKARIHKGMSDEEVIEFVNHYMPQYVFYLGTLSNKVH--LNP-H 261

Query:   464 TLIIEIDDGRNPI 476
              L I +D+ R P+
Sbjct:   262 CLEIILDENRYPV 274

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

SGD|S000003437 TDA10 "ATP-binding protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 97/252 (38%), Positives = 133/252 (52%)

Query:   233 YIGFSAPQGCGKTTLAFAL-DYLF-RVTGRKS-ATISIDDFYLTAEGQAKLREANRGNAL 289
             +I FS PQG GK+  +  + ++L  +  G KS    SIDDFYLT E Q KL E  + N L
Sbjct:    33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92

Query:   290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTK--MKLPRYDKSAYNGRGDRADPSTWPEIE 347
             L+ RG  G+HD++L  E L  I    +   +  + LP+YDKS + G GDR  P T  +I+
Sbjct:    93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC-P-TGQKIK 150

Query:   348 GPLTVVLYEGWMLGFKPL--PVEVVKAVDPQLETVNKNLEAYFDA-W-DKFIKAW-IVIK 402
              P+ + + EGW LGF P+   +E    +   +  VN  L  Y D  W +  IK+  IV  
Sbjct:   151 LPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFT 210

Query:   403 IKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPE 462
               + + VY WRLQ E  +      GM+DE+V  FV RY+P+Y  YL         GS   
Sbjct:   211 TDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIA- 269

Query:   463 HTLIIEIDDGRN 474
              TL + ID  RN
Sbjct:   270 -TLTLGIDSNRN 280

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

ASPGD|ASPL0000066413 AN7108 [Emericella nidulans (taxid:162425)]

 Score = 250 (93.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 54/148 (36%), Positives = 85/148 (57%)

Query:   230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSA--TISIDDFYLTAEGQAKLREANRGN 287
             P +++G +  QG GKT L   L+ + R      A  T+S+DD YLT E Q  L ++N  N
Sbjct:    35 PPFFLGLNGVQGAGKTVLVSTLNSILRSPPYSLAVVTLSLDDLYLTHEDQVSLAKSNPTN 94

Query:   288 ALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWP--E 345
              LL+ RG  G+HDL L+    +A+    + G    +P+YDKSA++G+GDR     W    
Sbjct:    95 PLLQHRGQPGTHDLPLAQSVFSAL----RAGRPTAIPQYDKSAFSGQGDRVPMEQWETVN 150

Query:   346 IEGP--LTVVLYEGWMLGFKPLPVEVVK 371
             +EG   + V+++EGW +GF+    +++K
Sbjct:   151 VEGQEQIKVLIFEGWSVGFRAWDDDILK 178

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|Q608T1 MCA1408 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 261 (96.9 bits), Expect = 4.7e-22, P = 4.7e-22
 Identities = 80/244 (32%), Positives = 123/244 (50%)

Query:   234 IGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLTAEGQAKLREANRGNALLEF 292
             +G +  QG GK+TL   L  + R   G K A  SIDD Y T   + +L  A   + LL  
Sbjct:    36 LGVNGAQGSGKSTLCDFLSLILREGYGCKVAGFSIDDLYKTRSERERL--AREVHPLLMT 93

Query:   293 RGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTV 352
             RG  G+HD++L ++TL  ++K+  E   + LP +DKS      DR   S WP+I  P+ V
Sbjct:    94 RGVPGTHDVELGLQTLDRLTKIGPE-VSVALPAFDKSV----DDRRPLSAWPQITAPVDV 148

Query:   353 VLYEGWMLGFKPL-------PVEVVKA---VDPQLET-VNKNLEA-YFDAWDKFIKAWIV 400
             V++EGW +G  P        P+  +++    D    T VN+ L   Y + +D+  +  I+
Sbjct:   149 VIFEGWCVGCIPQVGEDLVRPINALESGEDADGSWRTYVNEQLGGPYAELFDRLDRL-IM 207

Query:   401 IKIKDPSCVYEWR-LQA-EIAMREAGNPGMSDEEVKDFVS--RYLPAYHAYLPTLYSEGP 456
             +K+ D  CVY WR LQ  ++A    GN G S   + D  +  R++  Y      + +E P
Sbjct:   208 LKVPDLECVYRWRGLQERKLAAAVRGN-GSSSHRLMDEAALRRFIMHYERLTRHMLAEMP 266

Query:   457 NGSD 460
               +D
Sbjct:   267 ARAD 270

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0004639 orf19.7345 [Candida albicans (taxid:5476)]

 Score = 179 (68.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 44/126 (34%), Positives = 66/126 (52%)

Query:   261 KSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI--------- 311
             K+   S+DDFYL    Q KL ++   N LL+ RG  G+H+L L V+T   +         
Sbjct:    57 KTIQFSMDDFYLCKSDQDKLNDSTE-NPLLKGRGLPGTHELSLLVDTFNKLINNYKQFKK 115

Query:   312 SKLTKEGTK------MKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPL 365
             S L  E         +K+P YDK A+NG GDR++      IE P+ ++++EGW  GF  L
Sbjct:   116 SHLESESESESDWEVIKIPSYDKGAFNGIGDRSNDKYHTLIESPIDIIIFEGWFNGFYSL 175

Query:   366 PVEVVK 371
                +++
Sbjct:   176 DPTILQ 181

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A3W4 CaO19.7345 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 179 (68.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 44/126 (34%), Positives = 66/126 (52%)

Query:   261 KSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI--------- 311
             K+   S+DDFYL    Q KL ++   N LL+ RG  G+H+L L V+T   +         
Sbjct:    57 KTIQFSMDDFYLCKSDQDKLNDSTE-NPLLKGRGLPGTHELSLLVDTFNKLINNYKQFKK 115

Query:   312 SKLTKEGTK------MKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPL 365
             S L  E         +K+P YDK A+NG GDR++      IE P+ ++++EGW  GF  L
Sbjct:   116 SHLESESESESDWEVIKIPSYDKGAFNGIGDRSNDKYHTLIESPIDIIIFEGWFNGFYSL 175

Query:   366 PVEVVK 371
                +++
Sbjct:   176 DPTILQ 181

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q489I5 CPS_0521 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 218 (81.8 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 71/258 (27%), Positives = 120/258 (46%)

Query:   232 WYIGFSAPQGCGKTTLA-FALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALL 290
             +++G +  QG GK+TL  F  +YL          +S+DDFYL++  + +L  A+  + LL
Sbjct:    41 YFVGINGCQGSGKSTLTDFIAEYLIAQYQLNVVVMSLDDFYLSSTKRNQL--ADDIHPLL 98

Query:   291 EFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADP-STWPEIEGP 349
               RG  G+HD+      L   S+L++  T   +P+++K+      D   P S W  +E P
Sbjct:    99 STRGVPGTHDITALNRVL---SQLSEHRTGFSIPKFNKAI-----DEPCPQSQWISVEKP 150

Query:   350 LTVVLYEGWMLGFKPLPVEVVKAVDPQLET-----------VNKNLEAYFDAWDKFIKAW 398
             + ++L EGW  G      E ++     LE            VN+ L+  ++   K +  W
Sbjct:   151 VDIILLEGWCWGVTSQTDEQLQTPINDLELQHDAEGEWRSYVNQQLKTGYEPLYKKMDFW 210

Query:   399 IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNG 458
             + ++     CVY+WRL+ E  + +A N G+S  +V    +  L   H Y   L   G N 
Sbjct:   211 LALQAPSFDCVYQWRLEQEQKL-QAKNIGLSHSKVMS-PAEVLNFTH-YFQRLTVHGSNT 267

Query:   459 SDPEHTLIIEIDDGRNPI 476
                    +  +D+ R+ I
Sbjct:   268 LSNSADAVFHLDNTRHII 285

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0521 CPS_0521 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 218 (81.8 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 71/258 (27%), Positives = 120/258 (46%)

Query:   232 WYIGFSAPQGCGKTTLA-FALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALL 290
             +++G +  QG GK+TL  F  +YL          +S+DDFYL++  + +L  A+  + LL
Sbjct:    41 YFVGINGCQGSGKSTLTDFIAEYLIAQYQLNVVVMSLDDFYLSSTKRNQL--ADDIHPLL 98

Query:   291 EFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADP-STWPEIEGP 349
               RG  G+HD+      L   S+L++  T   +P+++K+      D   P S W  +E P
Sbjct:    99 STRGVPGTHDITALNRVL---SQLSEHRTGFSIPKFNKAI-----DEPCPQSQWISVEKP 150

Query:   350 LTVVLYEGWMLGFKPLPVEVVKAVDPQLET-----------VNKNLEAYFDAWDKFIKAW 398
             + ++L EGW  G      E ++     LE            VN+ L+  ++   K +  W
Sbjct:   151 VDIILLEGWCWGVTSQTDEQLQTPINDLELQHDAEGEWRSYVNQQLKTGYEPLYKKMDFW 210

Query:   399 IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNG 458
             + ++     CVY+WRL+ E  + +A N G+S  +V    +  L   H Y   L   G N 
Sbjct:   211 LALQAPSFDCVYQWRLEQEQKL-QAKNIGLSHSKVMS-PAEVLNFTH-YFQRLTVHGSNT 267

Query:   459 SDPEHTLIIEIDDGRNPI 476
                    +  +D+ R+ I
Sbjct:   268 LSNSADAVFHLDNTRHII 285

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q489J7 CPS_0509 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 216 (81.1 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 61/215 (28%), Positives = 108/215 (50%)

Query:   232 WYIGFSAPQGCGKTTLA-FALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRG-NAL 289
             +++G +  QG GK+TL  F   YL          +S+DDFY ++E   K R   +G + L
Sbjct:    41 YFVGINGCQGSGKSTLTDFIASYLTTQYQLNVVVMSLDDFYFSSE---KRRTLAQGIHPL 97

Query:   290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGP 349
             L  RG  G+HD+   VE    +++L ++ T   + +++K+  N   ++     WP IE  
Sbjct:    98 LATRGVPGTHDV---VELNHVLTQLKEKKTGFSIQKFNKATDNPYPEKQ----WPTIEKT 150

Query:   350 LTVVLYEGWMLGFKPLPVEVVKAVDPQLET-----------VNKNLEAYFDAWDKFIKAW 398
               +++ EGW  G +P  VE +KA   +LE            VN+ L+  +    K +  W
Sbjct:   151 ADIIIVEGWCWGVEPQTVEQLKAPINELECQYDKTGQWRDYVNQQLKIAYKPLYKKMDFW 210

Query:   399 IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV 433
             + ++     CVY+WRL+ E  +++  N G+ + ++
Sbjct:   211 LALQAPSFDCVYKWRLEQEQKLKDR-NIGLVNSKI 244

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944I4	GLYK_ARATH	2, ., 7, ., 1, ., 3, 1	0.6041	0.8613	0.8991	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
PLN03046	460	PLN03046, PLN03046, D-glycerate 3-kinase; Provisio	0.0
PLN02796	347	PLN02796, PLN02796, D-glycerate 3-kinase	0.0
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	1e-55
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	2e-08
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	4e-08
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	7e-04
COG3954	289	COG3954, PrkB, Phosphoribulokinase [Energy product	0.004

>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional

 Score =  637 bits (1645), Expect = 0.0
 Identities = 289/471 (61%), Positives = 333/471 (70%), Gaps = 27/471 (5%)

Query: 19  MATLNILLPTPSTN-SHYFN----ANYSQSSHNVYFNTNNNSNNNTKLHSLPCSHSLPLL 73
           MA  + L    S+N  HY N    A+Y     +      N  +N   L   P S S    
Sbjct: 1   MAVASSLSSLISSNLQHYMNPIHAADYPIPCASAAAFNFNPISNPFNLKRRPYSPSSHKF 60

Query: 74  SSLFVQTKSN-PSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCS 132
           +     + S+ PS K S   THLS       G GCSW+Q+NSM+               S
Sbjct: 61  NDRVAASCSSYPSSKLSSRKTHLSC-----PGCGCSWIQDNSMVHD-YATTAATSKRCSS 114

Query: 133 AIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYL 192
              +  A VSSVQDL+ FICSGPL+DK+G++ EKI  SIDKW+ Y S LCRLFQLNEL L
Sbjct: 115 LPTSSPALVSSVQDLYEFICSGPLVDKIGYTPEKIAQSIDKWLLYGSQLCRLFQLNELKL 174

Query: 193 TFPQKV---GFFTTTYLFSCGVKIKFLSMCPSLRMEKIY----LPWWYIGFSAPQGCGKT 245
           T PQK     ++   +++ C  +I       +    K      +P   IGFSAPQGCGKT
Sbjct: 175 TEPQKARIYHYYIPVFIW-CEDQI-------AEHRSKFKDGDDIPPLVIGFSAPQGCGKT 226

Query: 246 TLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSV 305
           TL FALDYLFRVTGRKSAT+SIDDFYLTAEGQA+LRE N GNALLE RGNAGSHDLQ SV
Sbjct: 227 TLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSV 286

Query: 306 ETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPL 365
           ETL A+SKLTKEG KMK+PRYDKSAY+GRGDRADPSTWPE+EGPL V+L+EGWMLGFKPL
Sbjct: 287 ETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPL 346

Query: 366 PVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGN 425
           P EVVKAVDPQLE VNKNLEAY+DAWDKFI AW+VIKI+DPSCVY+WRLQAEIAMR  G 
Sbjct: 347 PNEVVKAVDPQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGK 406

Query: 426 PGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
           PGMSDEEV DFVSRYLPAY AYLPTLY+EGP+GSDP+H L+I+ID+ RNPI
Sbjct: 407 PGMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNPI 457

Length = 460

>gnl|CDD|215427 PLN02796, PLN02796, D-glycerate 3-kinase

 Score =  577 bits (1489), Expect = 0.0
 Identities = 228/349 (65%), Positives = 262/349 (75%), Gaps = 7/349 (2%)

Query: 131 CSAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNEL 190
            S  P+    VS V DL  FICSGPLI K+G + E + +SID+WIA+   LCRL Q +EL
Sbjct: 1   GSLFPSTPPDVSDVADLREFICSGPLISKLGLTAEDVAESIDEWIAHGLRLCRLLQFDEL 60

Query: 191 YLTFPQKVGFFTTTYL---FSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTL 247
            L+  QK   +   YL     C  +   L    S   +   +P   IG SAPQGCGKTTL
Sbjct: 61  SLSASQKARVYHY-YLPVYLWCEDQ---LEAHRSKFKDGDEIPPLVIGISAPQGCGKTTL 116

Query: 248 AFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET 307
            FAL YLF  TGR++A++SIDDFYLTA  QAKL EAN GNALLE RGNAGSHDL L VET
Sbjct: 117 VFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVET 176

Query: 308 LTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPV 367
           L A+ KL KEG+KMK+PRYDKSAY GRGDRADPSTWPE+EGPL VVL+EGWMLGFKPL  
Sbjct: 177 LEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGP 236

Query: 368 EVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPG 427
           + VKAVDPQLE VNKNLEAY+DAWDK + +WIVIK+ DPS VYEWRLQAEIAMR  G PG
Sbjct: 237 DAVKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPG 296

Query: 428 MSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNPI 476
           MSDEEV DFVSRY+PAY AYLP LY+EGP GSDP++ L+IEID+ RNP+
Sbjct: 297 MSDEEVADFVSRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNPL 345

Length = 347

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score =  187 bits (475), Expect = 1e-55
 Identities = 89/264 (33%), Positives = 130/264 (49%), Gaps = 27/264 (10%)

Query: 228 YLPWWY-------IGFSAPQGCGKTTLAFALD-YLFRVTGRKSATISIDDFYLTAEGQAK 279
             PW         +G S PQG GK+TL+  +   L      ++AT+S+DD YLT   + +
Sbjct: 40  IAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLR 99

Query: 280 LREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRAD 339
           L      N LL+ RG  G+HD  L +  L AI++    G  + LPR+DKSA+ G GDRA 
Sbjct: 100 LARQV--NPLLQTRGLPGTHDPTLGLNVLNAIAR---GGPTVPLPRFDKSAFAGAGDRAP 154

Query: 340 PSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLET---------VNKNLEAYFDA 390
            + W +    + +V+ EGW +GF+P+  E++ A    LE          VN  L  Y   
Sbjct: 155 QTQWIK--FEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDKLAPYRPL 212

Query: 391 WDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPT 450
           +D+ I + I++   D + VY WRLQ E  +      GMSDE+V +FV+ Y+ +   YL  
Sbjct: 213 FDR-IDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSEFVNAYMRSLELYLQR 271

Query: 451 LYSEGPNGSDPEHTLIIEIDDGRN 474
           L             L I +D  R 
Sbjct: 272 LSEWIALDLP--AILEIAVDLNRR 293

Length = 300

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 57/224 (25%), Positives = 78/224 (34%), Gaps = 57/224 (25%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YLTAEGQAKLREANRGNALLE 291
           IG +   G GKTT+A     +F   G  +A I  D F  Y          +  R      
Sbjct: 2   IGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKR------ 55

Query: 292 FRGNAG-SH------DLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWP 344
             GN   S       D  L  E    +    KEG     P Y+          ADP TWP
Sbjct: 56  -AGNNHYSFFSPEANDFDLLYEQFKEL----KEGGSGDKPIYNHVTGE-----ADP-TWP 104

Query: 345 EIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIK 404
           E+     ++ YE    G   L  E V     QL     +L+   D           I ++
Sbjct: 105 ELIEGADILFYE----GLHGLYDERVA----QL----LDLKIGVD---------PDINLE 143

Query: 405 DPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYL 448
                +  ++Q ++A R     G S E V D + R  P Y  Y+
Sbjct: 144 -----WIQKIQRDMAER-----GHSLEAVTDSILRRKPDYVNYI 177

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 25/135 (18%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           +G + P G GKTT A  L    RV G     IS+DD+Y+            R     E  
Sbjct: 2   VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV-----------PRKTPRDED- 49

Query: 294 GNAGSHD--LQLSVETLT-AISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPL 350
              G++D    L ++ L   +  L   G +++LP YD      RG R           P 
Sbjct: 50  ---GNYDFESILDLDLLNKNLHDL-LNGKEVELPIYDFRTGKRRGYRKL------KLPPS 99

Query: 351 TVVLYEGWMLGFKPL 365
            VV+ EG     + L
Sbjct: 100 GVVILEGIYALNERL 114

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 25/130 (19%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           IG +   G GKTT+A  L     V   K   IS+DD+Y   + Q+ L    R        
Sbjct: 11  IGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLDDYY---KDQSHLPFEERNKI----- 60

Query: 294 GNA---GSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPL 350
            N     + DL L +E L  +    K+G  + LP YD   Y     R           P 
Sbjct: 61  -NYDHPEAFDLDLLIEHLKDL----KQGKPVDLPVYD---YK-THTREPE---TIKVEPN 108

Query: 351 TVVLYEGWML 360
            VV+ EG +L
Sbjct: 109 DVVIVEGILL 118

Length = 218

>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and conversion]

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 54/228 (23%), Positives = 81/228 (35%), Gaps = 44/228 (19%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YLTAEGQAKLREA-NRGNALL 290
           I  +   G G TT + A   +F      +A +  D F  Y   E    +R+A + G  + 
Sbjct: 8   IAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHIS 67

Query: 291 EFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSA-YNGRGDRADPST---WPEI 346
            F   A  +D  L  +T     +  K  ++  L  YD++  +N       P T   W  +
Sbjct: 68  YFGPEA--NDFGLLEQTFIEYGQSGKGRSRKYLHTYDEAVPWN-----QVPGTFTPWQPL 120

Query: 347 EGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVN-KNLEAYFDAWDKFIKAWIVIKIKD 405
             P  V+ YEG   G       V + VD  +  V   NLE            WI      
Sbjct: 121 PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE------------WI------ 162

Query: 406 PSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS 453
                      +  +R+    G S E V D V R +  Y  Y+   +S
Sbjct: 163 -----------QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFS 199

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
PLN03046	460	D-glycerate 3-kinase; Provisional	100.0
PLN02796	347	D-glycerate 3-kinase	100.0
KOG2878	282	consensus Predicted kinase [General function predi	100.0
COG4240	300	Predicted kinase [General function prediction only	100.0
PRK05439	311	pantothenate kinase; Provisional	100.0
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	100.0
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	100.0
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.98
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.97
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.97
PTZ00301	210	uridine kinase; Provisional	99.96
PLN02348	395	phosphoribulokinase	99.95
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.95
PRK15453	290	phosphoribulokinase; Provisional	99.94
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.93
PRK05480	209	uridine/cytidine kinase; Provisional	99.91
PRK06696	223	uridine kinase; Validated	99.9
PLN02318	656	phosphoribulokinase/uridine kinase	99.9
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.9
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.89
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.88
PRK07429	327	phosphoribulokinase; Provisional	99.88
PRK07667	193	uridine kinase; Provisional	99.87
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.87
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.87
PRK06547	172	hypothetical protein; Provisional	99.72
KOG4203	473	consensus Armadillo/beta-Catenin/plakoglobin [Sign	99.63
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.62
KOG3308	225	consensus Uncharacterized protein of the uridine k	99.53
PRK08233	182	hypothetical protein; Provisional	99.37
COG3954	289	PrkB Phosphoribulokinase [Energy production and co	99.34
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.59
PRK06762	166	hypothetical protein; Provisional	98.55
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.43
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.39
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.37
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.32
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.11
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.11
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.08
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.06
PRK07261	171	topology modulation protein; Provisional	98.04
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.04
PRK04182	180	cytidylate kinase; Provisional	98.03
PRK04040	188	adenylate kinase; Provisional	98.01
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.92
PRK13808	333	adenylate kinase; Provisional	97.9
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.87
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.84
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.83
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.81
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.8
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.79
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.77
PRK05541	176	adenylylsulfate kinase; Provisional	97.75
PRK06217	183	hypothetical protein; Validated	97.74
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.74
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.73
PRK00889	175	adenylylsulfate kinase; Provisional	97.71
PRK03846	198	adenylylsulfate kinase; Provisional	97.71
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.7
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.68
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.67
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.66
PRK14528	186	adenylate kinase; Provisional	97.64
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.64
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.6
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.6
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.6
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.6
PRK10416	318	signal recognition particle-docking protein FtsY;	97.59
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.59
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.57
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.56
PRK14737	186	gmk guanylate kinase; Provisional	97.55
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.53
PRK10867	433	signal recognition particle protein; Provisional	97.51
PRK08118	167	topology modulation protein; Reviewed	97.51
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.5
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.49
PRK14974	336	cell division protein FtsY; Provisional	97.48
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.47
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.47
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.47
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.47
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.47
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.46
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.45
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.44
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.43
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.42
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.41
cd03116	159	MobB Molybdenum is an essential trace element in t	97.39
TIGR00959	428	ffh signal recognition particle protein. This mode	97.39
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.39
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.38
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.38
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.37
PRK03839	180	putative kinase; Provisional	97.36
PRK13768	253	GTPase; Provisional	97.35
PRK00131	175	aroK shikimate kinase; Reviewed	97.35
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.34
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.33
PLN02200	234	adenylate kinase family protein	97.32
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.31
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.31
PLN02422	232	dephospho-CoA kinase	97.3
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.3
cd03114	148	ArgK-like The function of this protein family is u	97.28
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.27
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.26
smart00382	148	AAA ATPases associated with a variety of cellular	97.26
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.25
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.22
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.21
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.19
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	97.17
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.13
PRK12338	319	hypothetical protein; Provisional	97.11
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.11
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.11
PRK01184	184	hypothetical protein; Provisional	97.11
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.11
PRK14527	191	adenylate kinase; Provisional	97.1
PRK09825	176	idnK D-gluconate kinase; Provisional	97.1
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.1
PLN02840	421	tRNA dimethylallyltransferase	97.1
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.08
PRK00698	205	tmk thymidylate kinase; Validated	97.08
PRK14530	215	adenylate kinase; Provisional	97.06
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.03
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.02
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.02
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.02
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.02
PTZ00088	229	adenylate kinase 1; Provisional	96.99
PRK08356	195	hypothetical protein; Provisional	96.98
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.98
PRK00023	225	cmk cytidylate kinase; Provisional	96.96
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.96
PHA02530	300	pseT polynucleotide kinase; Provisional	96.93
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	96.92
PRK14531	183	adenylate kinase; Provisional	96.92
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.92
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	96.9
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	96.9
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.89
cd02034	116	CooC The accessory protein CooC, which contains a	96.89
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.88
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.86
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.83
KOG1533	290	consensus Predicted GTPase [General function predi	96.82
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.79
PRK14532	188	adenylate kinase; Provisional	96.79
PRK00300	205	gmk guanylate kinase; Provisional	96.78
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.78
PLN02748	468	tRNA dimethylallyltransferase	96.78
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.76
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.76
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.74
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	96.7
PRK02496	184	adk adenylate kinase; Provisional	96.68
PTZ00451	244	dephospho-CoA kinase; Provisional	96.67
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.66
PLN02165	334	adenylate isopentenyltransferase	96.66
PLN02924	220	thymidylate kinase	96.65
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.64
PRK06761	282	hypothetical protein; Provisional	96.63
PRK00279	215	adk adenylate kinase; Reviewed	96.62
PRK07933	213	thymidylate kinase; Validated	96.62
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.61
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.61
PRK13949	169	shikimate kinase; Provisional	96.59
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	96.59
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.59
PF00004	132	AAA: ATPase family associated with various cellula	96.55
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.55
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.54
PRK13947	171	shikimate kinase; Provisional	96.54
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.54
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.54
cd02040	270	NifH NifH gene encodes component II (iron protein)	96.53
TIGR01287	275	nifH nitrogenase iron protein. This model describe	96.52
PRK05057	172	aroK shikimate kinase I; Reviewed	96.5
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.48
cd02117	212	NifH_like This family contains the NifH (iron prot	96.48
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.47
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.45
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.45
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.44
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.42
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	96.41
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.4
cd02032	267	Bchl_like This family of proteins contains bchL an	96.4
PRK14738	206	gmk guanylate kinase; Provisional	96.4
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.39
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.39
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.38
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.37
PRK13973	213	thymidylate kinase; Provisional	96.34
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	96.31
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.31
PRK00625	173	shikimate kinase; Provisional	96.29
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.29
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.29
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.28
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.28
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	96.27
PRK03731	171	aroL shikimate kinase II; Reviewed	96.27
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.25
PRK13230	279	nitrogenase reductase-like protein; Reviewed	96.24
PHA00729	226	NTP-binding motif containing protein	96.24
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	96.23
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.22
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.19
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.18
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.17
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.15
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.15
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.15
PRK13975	196	thymidylate kinase; Provisional	96.13
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.13
PRK13946	184	shikimate kinase; Provisional	96.13
PRK13232	273	nifH nitrogenase reductase; Reviewed	96.11
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.11
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.11
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.1
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.1
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.09
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.09
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.09
COG1341	398	Predicted GTPase or GTP-binding protein [General f	96.09
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.08
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.08
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.08
PRK08727	233	hypothetical protein; Validated	96.08
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.08
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.07
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.07
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.07
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.07
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	96.06
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.06
PRK13948	182	shikimate kinase; Provisional	96.06
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.06
COG1123	539	ATPase components of various ABC-type transport sy	96.05
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.04
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.03
PRK12377	248	putative replication protein; Provisional	96.03
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.02
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.02
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.01
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.01
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.99
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.98
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.98
PRK11545	163	gntK gluconate kinase 1; Provisional	95.98
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.97
PRK13235	274	nifH nitrogenase reductase; Reviewed	95.97
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	95.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.96
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.95
PHA02518	211	ParA-like protein; Provisional	95.95
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.95
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.94
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.93
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.93
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.9
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.9
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.9
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.89
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.89
PRK05642	234	DNA replication initiation factor; Validated	95.89
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	95.88
PRK12337	475	2-phosphoglycerate kinase; Provisional	95.88
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.88
PRK09183	259	transposase/IS protein; Provisional	95.87
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.85
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.85
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.85
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	95.85
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.85
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.84
PRK04296	190	thymidine kinase; Provisional	95.84
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.84
PRK08084	235	DNA replication initiation factor; Provisional	95.83
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.82
PRK14526	211	adenylate kinase; Provisional	95.82
PF13245	76	AAA_19: Part of AAA domain	95.81
PLN02674	244	adenylate kinase	95.81
PRK13695	174	putative NTPase; Provisional	95.8
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.8
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	95.8
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	95.8
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.8
PF13173	128	AAA_14: AAA domain	95.79
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	95.78
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.78
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	95.78
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.77
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.77
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.77
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.77
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.76
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.75
PRK10908	222	cell division protein FtsE; Provisional	95.75
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	95.75
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.74
cd03246	173	ABCC_Protease_Secretion This family represents the	95.74
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	95.73
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.73
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.73
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	95.73
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.73
PRK13233	275	nifH nitrogenase reductase; Reviewed	95.72
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.72
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.72
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.72
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.72
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.72
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.72
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.71
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.71
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.71
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	95.71
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.71
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	95.7
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.7
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.7
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.69
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	95.69
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.69
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.69
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.69
PRK06067	234	flagellar accessory protein FlaH; Validated	95.69
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.68
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	95.68
KOG1534	273	consensus Putative transcription factor FET5 [Tran	95.68
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.68
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	95.68
PRK13231	264	nitrogenase reductase-like protein; Reviewed	95.68
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.67
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.67
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	95.67
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	95.67
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.66
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.66
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	95.66
cd02036	179	MinD Bacterial cell division requires the formatio	95.66
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	95.65
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	95.65
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.64
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	95.64
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.64
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.64
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.63
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.63
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.63
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.63
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.63
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.62
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	95.62
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.62
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	95.62
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.62
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.62
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	95.61
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	95.61
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	95.61
PLN02459	261	probable adenylate kinase	95.6
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.6
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.6
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.6
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.59
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.59
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.59
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.59
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.58
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	95.58
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.58
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.57
PRK06893	229	DNA replication initiation factor; Validated	95.56
PRK09984	262	phosphonate/organophosphate ester transporter subu	95.56
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.55
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.55
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.55
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	95.54
CHL00072	290	chlL photochlorophyllide reductase subunit L	95.54
CHL00175	281	minD septum-site determining protein; Validated	95.54
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	95.54
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.54
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.53
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	95.53
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.53
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.53
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.53
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.53
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.53
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.53
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	95.52
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.52
PRK13234	295	nifH nitrogenase reductase; Reviewed	95.51
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.51
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.51
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.51
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.5
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	95.5
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.5
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.49
PF05729	166	NACHT: NACHT domain	95.49
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.49
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	95.48
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.47
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	95.47
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.46
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.46
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	95.46
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.45
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	95.45
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	95.45
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.45
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	95.44
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.44
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	95.44
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	95.43
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.43
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	95.43
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.43
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	95.43
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.42
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.42
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	95.42
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.42
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	95.41
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	95.4
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	95.4
PRK06526	254	transposase; Provisional	95.39
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	95.39
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	95.39
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.39
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	95.38
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.37
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.37
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.37
PF12846	304	AAA_10: AAA-like domain	95.36
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.36
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.35
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	95.35
COG4181	228	Predicted ABC-type transport system involved in ly	95.35
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	95.35
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	95.35
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	95.34
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	95.34
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.33
PRK07952	244	DNA replication protein DnaC; Validated	95.33
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	95.33
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.32
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	95.32
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	95.32
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.31
PRK05973	237	replicative DNA helicase; Provisional	95.31
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.31
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.31
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	95.31
CHL00181	287	cbbX CbbX; Provisional	95.31
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	95.31
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	95.3
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	95.3
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	95.29
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	95.29
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	95.28
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	95.28
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.28
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.27
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.27
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	95.27
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.25
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.24
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.24
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.23
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	95.23
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	95.23
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.22
PRK13851	344	type IV secretion system protein VirB11; Provision	95.22
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.22
PF13479	213	AAA_24: AAA domain	95.21
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.21
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.2
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.19
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	95.19
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	95.19
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	95.18
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.18

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=100.00  E-value=2.9e-91  Score=724.52  Aligned_cols=394  Identities=69%  Similarity=1.115  Sum_probs=362.4

Q ss_pred             cchhcccCCCCCCCcccCCCCccccccccCCCCccccccCcccccCCCCCCCCCCccccCCCCCCCCCCchhhHHHhhcc
Q 044604           74 SSLFVQTKSNPSHKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQDLFAFICS  153 (476)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (476)
                      +..-.-.++++++|+|+++||+|++     |+||||||++||+++++++ +..+++++++++++||+||||+|||||||+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (460)
T PLN03046         62 DRVAASCSSYPSSKLSSRKTHLSCP-----GCGCSWIQDNSMVHDYATT-AATSKRCSSLPTSSPALVSSVQDLYEFICS  135 (460)
T ss_pred             ccccccccccccccccccccccccC-----Ccccchhccccccchhhhh-cccCCccccCCCCCccccccHHHHHHHHhc
Confidence            3444457789999999999999999     9999999999999999866 557899999999999999999999999999


Q ss_pred             CCCCCccccchhhhcccHHHHHHHHHHHHHHhcCCCCCCCccccce--eeeeeHHHHHHHHHhhhhcCCccccccCCCCc
Q 044604          154 GPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKVG--FFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPW  231 (476)
Q Consensus       154 ~~l~~~~~f~~e~~~~~i~~w~~l~~~l~~l~~lne~~l~~~~~~r--~~ylPL~~~l~~~v~~~~~~~~~~~~~~~~~P  231 (476)
                      |||+++++++.|+|+++||+|+.+|.+||++++||+..|++..+.+  .+|+||+.||..++.+   |+++.+++..++|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ylPl~~w~~~~i~~---h~~~~~~~~~~~P  212 (460)
T PLN03046        136 GPLVDKIGYTPEKIAQSIDKWLLYGSQLCRLFQLNELKLTEPQKARIYHYYIPVFIWCEDQIAE---HRSKFKDGDDIPP  212 (460)
T ss_pred             CccchhccCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999998877765543  4566999999888887   5544333345689


Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHh
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI  311 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~L  311 (476)
                      +||||+|+||||||||++.|..+|+..|.++.+|++||||++.+++.++++.+|.|+|+.+||.|++||+.++.++|.+|
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L  292 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETLEAL  292 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHHHHH
Confidence            99999999999999999999999987788899999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhh
Q 044604          312 SKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAW  391 (476)
Q Consensus       312 k~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw  391 (476)
                      .+.+++|+.|.+|+|||++|+|+|||.+++.|..+.+|.|||||||||+|+.|...+.++..|++++.||++|++|+++|
T Consensus       293 ~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w  372 (460)
T PLN03046        293 SKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYDAW  372 (460)
T ss_pred             HHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHHHHH
Confidence            65446889999999999999999999999889999899999999999999999998888888999999999999999999


Q ss_pred             hhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEEeCC
Q 044604          392 DKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDD  471 (476)
Q Consensus       392 ~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~id~  471 (476)
                      ..++|.||+|+++|++++++||+|||++||+.++.|||+|||.+|+++|||+|+.|++.+++.+|.+++++++|+|+||+
T Consensus       373 ~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~  452 (460)
T PLN03046        373 DKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDE  452 (460)
T ss_pred             HHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECC
Confidence            99999999999999999999999999999988888999999999999999999999999999988877778899999999


Q ss_pred             CCCCC
Q 044604          472 GRNPI  476 (476)
Q Consensus       472 ~r~v~  476 (476)
                      +|+||
T Consensus       453 ~R~~~  457 (460)
T PLN03046        453 ERNPI  457 (460)
T ss_pred             CCCcc
Confidence            99986

>PLN02796 D-glycerate 3-kinase

Probab=100.00  E-value=1.5e-76  Score=603.85  Aligned_cols=342  Identities=66%  Similarity=1.092  Sum_probs=314.8

Q ss_pred             cCCCCCCCCCCchhhHHHhhccCCCCCccccchhhhcccHHHHHHHHHHHHHHhcCCCCCCCccccc--eeeeeeHHHHH
Q 044604          132 SAIPTERAQVSSVQDLFAFICSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTFPQKV--GFFTTTYLFSC  209 (476)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~e~~~~~i~~w~~l~~~l~~l~~lne~~l~~~~~~--r~~ylPL~~~l  209 (476)
                      +.++++||+||||+|||||||+|||++++++++|+|++.|++|+.++.+||+++++++.++++..+.  ..+|+|++.||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~P~~~~i   81 (347)
T PLN02796          2 SLFPSTPPDVSDVADLREFICSGPLISKLGLTAEDVAESIDEWIAHGLRLCRLLQFDELSLSASQKARVYHYYLPVYLWC   81 (347)
T ss_pred             CCCCCCCCCcccHHHHHHHHhcCcchhhhCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHcCcHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999887654433  35677999999


Q ss_pred             HHHHhhhhcCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCcc
Q 044604          210 GVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNAL  289 (476)
Q Consensus       210 ~~~v~~~~~~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npL  289 (476)
                      ...+..   |+++++++..++|++|||+|++|||||||++.|..+|...|.++..|++||||++..++.+++..+|.|+|
T Consensus        82 l~~l~~---~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~L  158 (347)
T PLN02796         82 EDQLEA---HRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNAL  158 (347)
T ss_pred             HHHHHH---HHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhh
Confidence            999888   55544445556899999999999999999999999998767789999999999999999999989999999


Q ss_pred             ccccCCCCCccHHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchh
Q 044604          290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEV  369 (476)
Q Consensus       290 l~~rG~P~t~D~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~  369 (476)
                      +.+||.|+|||++++.++|++|+++.+.|+.|.+|+|||+.|+|+|||.+++.|..+.+|.|||||||||+|+.|...+.
T Consensus       159 l~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~  238 (347)
T PLN02796        159 LELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDA  238 (347)
T ss_pred             hhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHH
Confidence            99999999999999999999997532268899999999999999999999888999989999999999999999999888


Q ss_pred             hhccCchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhh
Q 044604          370 VKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLP  449 (476)
Q Consensus       370 ~~~~d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~  449 (476)
                      +...|+++..||++|++|++.|..++|.||+|+++|++++++||+|||++||+.++.|||+|||.+|+++|||+|+.|++
T Consensus       239 l~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~~  318 (347)
T PLN02796        239 VKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYLP  318 (347)
T ss_pred             hhccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999889999999999999999999999999999888999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCceEEEEeCCCCCCC
Q 044604          450 TLYSEGPNGSDPEHTLIIEIDDGRNPI  476 (476)
Q Consensus       450 ~l~~~~P~~a~~~~~Lvl~id~~r~v~  476 (476)
                      .+++.+|.++.+.++|+|+||++|+|+
T Consensus       319 ~l~~~~~~~~~~~~~L~i~id~~R~~~  345 (347)
T PLN02796        319 GLYAEGPGGSDPDNVLVIEIDENRNPL  345 (347)
T ss_pred             HHhcCCCCCCCCCCceEEEECCCCCcc
Confidence            999988877666889999999999985

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=100.00  E-value=9.5e-57  Score=427.61  Aligned_cols=246  Identities=66%  Similarity=1.107  Sum_probs=228.9

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc---CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVT---GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLS  304 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~---G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL  304 (476)
                      .+-|+|||++||||||||||+.+|...|.+.   ...++.+|+||||++++++.++++.+|.|+|+++||.|||||+.++
T Consensus        28 ~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll  107 (282)
T KOG2878|consen   28 DDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLL  107 (282)
T ss_pred             CcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHH
Confidence            3569999999999999999999999877543   2478999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCc---hhhHHh
Q 044604          305 VETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDP---QLETVN  381 (476)
Q Consensus       305 ~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~---~l~~vn  381 (476)
                      .++|.+|-+.++.|..|.+|+||++.+.|.|||.+.++|+.+. |.+|||+||||+++.|.+.+..+..|+   +|..||
T Consensus       108 ~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~-P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN  186 (282)
T KOG2878|consen  108 VEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVE-PLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVN  186 (282)
T ss_pred             HHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccC-ceeEEEEecccccccccchhheeccCcccccHHHHh
Confidence            9999999765556678999999999999999999999999994 899999999999999998887777775   589999


Q ss_pred             HHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCC
Q 044604          382 KNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDP  461 (476)
Q Consensus       382 ~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~  461 (476)
                      +.|.+|+|+|..|||+||+|++++...|++||+|||++||+....|||+|||.+|++||||+|+.|++.++..+|.++  
T Consensus       187 ~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV~rYmP~Yk~YL~tl~~~~~lgs--  264 (282)
T KOG2878|consen  187 KKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFVSRYMPAYKAYLPTLYAEGPLGS--  264 (282)
T ss_pred             hHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHHHhhhhHHHhhhhhhhhcCCCCC--
Confidence            999999999989999999999999999999999999999999999999999999999999999999999999999884  


Q ss_pred             CceEEEEeCCCCCCC
Q 044604          462 EHTLIIEIDDGRNPI  476 (476)
Q Consensus       462 ~~~Lvl~id~~r~v~  476 (476)
                      .+.|.|.||++|.++
T Consensus       265 ~~~L~i~iDenRyp~  279 (282)
T KOG2878|consen  265 DRVLAIDIDENRYPI  279 (282)
T ss_pred             CeEEEEeecCCcccc
Confidence            589999999999875

>COG4240 Predicted kinase [General function prediction only]

Probab=100.00  E-value=3.8e-49  Score=381.37  Aligned_cols=237  Identities=36%  Similarity=0.610  Sum_probs=210.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTG-RKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      ++|+||||+|||||||||++..|..+|.+.| .+++.+|+||||+++++|.++++++  |||+++||.|||||+.++.++
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~--npllq~RGlpGTHD~tlglnV  125 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV--NPLLQTRGLPGTHDPTLGLNV  125 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhc--CchhcccCCCCCCchHHHHHH
Confidence            5699999999999999999999999998887 5999999999999999999999874  899999999999999999999


Q ss_pred             HHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhc---------cCchhh
Q 044604          308 LTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKA---------VDPQLE  378 (476)
Q Consensus       308 L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~---------~d~~l~  378 (476)
                      |++|.   +.|..|.+|+|||+.+.|.|||.+..+|+..  ++||+|+||||++++|.+...+..         ..+.+.
T Consensus       126 Lnai~---~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~--~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~  200 (300)
T COG4240         126 LNAIA---RGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF--EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRA  200 (300)
T ss_pred             HHHHh---cCCCCcccccccchhccCCCCCCCcccceec--ceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHH
Confidence            99996   3556799999999999999999998888765  589999999999999997765541         124568


Q ss_pred             HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCC
Q 044604          379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNG  458 (476)
Q Consensus       379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~  458 (476)
                      ++|..|..|.++|.. ||.+|.|.++|..+++.||+|||++|+++...|||+|||..|+++|||.|+.|+..+.+-.-..
T Consensus       201 dvN~kLa~Y~pL~~r-IdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~efvn~ymrsl~lylq~ls~~~al~  279 (300)
T COG4240         201 DVNDKLAPYRPLFDR-IDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSEFVNAYMRSLELYLQRLSEWIALD  279 (300)
T ss_pred             HHHhhhhhhHHHHHH-hhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999998655 8999999999999999999999999999999999999999999999999999999988641111


Q ss_pred             CCCCceEEEEeCCCCCC
Q 044604          459 SDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       459 a~~~~~Lvl~id~~r~v  475 (476)
                        ..+.|.|.+|.+|++
T Consensus       280 --~~a~leI~~d~nr~~  294 (300)
T COG4240         280 --LPAILEIAVDLNRRR  294 (300)
T ss_pred             --CcceeEEeecccccc
Confidence              235588888888864

>PRK05439 pantothenate kinase; Provisional

Probab=100.00  E-value=1.2e-44  Score=366.26  Aligned_cols=271  Identities=18%  Similarity=0.223  Sum_probs=221.8

Q ss_pred             CCCCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-c--CC
Q 044604          154 GPLIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-M--CP  220 (476)
Q Consensus       154 ~~l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~--~~  220 (476)
                      ..+++|..|+|++       |++|+.         +|.++.|+|+ .++++++   ++|+||+++|+.++.+.. .  ..
T Consensus         5 ~~~~~~~~~~r~~-------w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~---~iy~plarli~~~~~~~~~~~~~~   74 (311)
T PRK05439          5 NEFSPYLEFSREQ-------WAALRDSTPLTLTEEELERLRGLNDPISLEEVA---EIYLPLSRLLNLYVAANQRLQAAL   74 (311)
T ss_pred             cCCCCceeECHHH-------HHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHH---HHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4578999999999       999974         9999999997 4788887   999999999999987731 1  11


Q ss_pred             ccc-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCC
Q 044604          221 SLR-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAG  297 (476)
Q Consensus       221 ~~~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~  297 (476)
                      ..| +....+.|+||||+|++||||||+|+.|+.+|+.+  |.+|.+|++||||++++++.+       +++++++|+|+
T Consensus        75 ~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~-------~~l~~~kg~Pe  147 (311)
T PRK05439         75 EQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEE-------RGLMKRKGFPE  147 (311)
T ss_pred             HHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhh-------hhccccCCCcc
Confidence            122 33456789999999999999999999999999875  678999999999999987754       15788889999


Q ss_pred             CccHHHHHHHHHHhhhhhcCCce-EEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCch
Q 044604          298 SHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQ  376 (476)
Q Consensus       298 t~D~~lL~e~L~~Lk~~~k~G~~-v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~  376 (476)
                      |||+++|.++|..|+    +|+. +.+|+|||.+++    +.+++ ...+ .+.+|||||||++++.+..+         
T Consensus       148 s~D~~~l~~~L~~Lk----~G~~~v~~P~Yd~~~~d----~~~~~-~~~v-~~~dIvIVEGi~~L~~~~~~---------  208 (311)
T PRK05439        148 SYDMRALLRFLSDVK----SGKPNVTAPVYSHLIYD----IVPGE-KQTV-DQPDILIVEGLNVLQTGQNH---------  208 (311)
T ss_pred             cccHHHHHHHHHHHH----cCCCeEEeeeEEeecCC----cCCCc-eEEe-CCCCEEEEcCchhccCcccc---------
Confidence            999999999999994    7875 999999999865    55443 2345 56699999999999865420         


Q ss_pred             hhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhHHh
Q 044604          377 LETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAG----------NPGMSDEEVKDFVSRYLPAYHA  446 (476)
Q Consensus       377 l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~----------~~GmS~EeV~~Fv~r~~Paye~  446 (476)
                         ....+++++|+ ++|||+       +.+.+++|+++|+.++|++.          ++||+++++.+++..+|..  .
T Consensus       209 ---~~~~l~d~~D~-~IfVda-------~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~--~  275 (311)
T PRK05439        209 ---HRLFVSDFFDF-SIYVDA-------DEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDE--I  275 (311)
T ss_pred             ---cchhhHHhCCE-EEEEEC-------CHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHh--c
Confidence               12457899998 888888       88999999999999887653          3799999999999987665  4


Q ss_pred             hhhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604          447 YLPTLYSE-GPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       447 Y~~~l~~~-~P~~a~~~~~Lvl~id~~r~v  475 (476)
                      ..+++.+. .|++  .+|++||.++.+|.|
T Consensus       276 ~~pn~~~~I~Ptk--~~ADlIi~~~~~h~i  303 (311)
T PRK05439        276 NLPNLEENILPTR--ERADLILHKGADHSI  303 (311)
T ss_pred             chhhHHHhccCCC--cCCCEEEeCCCCCce
Confidence            45555454 7888  789999999999986

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=100.00  E-value=6e-42  Score=343.70  Aligned_cols=256  Identities=17%  Similarity=0.153  Sum_probs=202.1

Q ss_pred             HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhhc---CCccc-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604          180 YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLSM---CPSLR-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       180 ~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~~---~~~~~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      +|.++.|+|| .++++++   +||+||+++|+.++.+.+.   ....| +....+.|+||||+|++||||||||+.|..+
T Consensus         9 ~~~~~~~~~~~~~~~~v~---~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554         9 EIKRLKGINEDLSLEEVA---TIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             HHHHhhCCCCCcCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            7889999997 4788877   9999999999999998321   11122 2333578999999999999999999999999


Q ss_pred             HHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhhhhhcCCce-EEeeccccccc
Q 044604          255 FRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAY  331 (476)
Q Consensus       255 L~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk~~~k~G~~-v~iP~YD~s~~  331 (476)
                      ++++  +.+|.++++|+||++++++.+.       ++++.+|+|++||++++.++|..|+    +|+. +.+|+|||.++
T Consensus        86 l~~~~~~g~V~vi~~D~f~~~~~~l~~~-------g~~~~~g~P~s~D~~~l~~~L~~Lk----~g~~~v~~P~Yd~~~~  154 (290)
T TIGR00554        86 LSRWPEHRKVELITTDGFLHPNQVLKER-------NLMKKKGFPESYDMHRLVKFLSDLK----SGKPNVTAPVYSHLTY  154 (290)
T ss_pred             HhhcCCCCceEEEecccccccHHHHHHc-------CCccccCCChhccHHHHHHHHHHHH----CCCCceecCccccccC
Confidence            9865  4579999999999998876541       3567889999999999999999994    7874 99999999987


Q ss_pred             cCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHH
Q 044604          332 NGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYE  411 (476)
Q Consensus       332 ~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~  411 (476)
                      +    +.++. +..+ .|.|||||||||+++.|.....    |    .-+..+++++|+ ++|||+       |.+++++
T Consensus       155 d----~~~~~-~~~v-~~~dIiIvEGi~vL~~~~~~~~----~----~~~~~~~d~~D~-~IyvDa-------~~d~~~~  212 (290)
T TIGR00554       155 D----VIPDG-FKVV-VQPDILILEGLNVLQSGMDYPH----D----PHHVFVSDFVDF-SIYVDA-------EEDLLQT  212 (290)
T ss_pred             C----cCCCC-eEEc-CCCCEEEECCchHhCCchhccc----c----cchHHHHHhCCE-EEEEEC-------CHHHHHH
Confidence            5    55543 3444 6779999999999987652100    0    012357888888 888887       7899999


Q ss_pred             HHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhHHhhhhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604          412 WRLQAEIAMREAG----------NPGMSDEEVKDFVSRYLPAYHAYLPTLYSE-GPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       412 WRleRE~~Lr~~~----------~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~-~P~~a~~~~~Lvl~id~~r~v  475 (476)
                      |+++|++.+|+++          ++||+++|+.+++..+|..  ...+++.++ +|++  .+|++||+++.+|.|
T Consensus       213 w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~--~~~~nl~~~I~Ptr--~rAdlIl~~~~~h~i  283 (290)
T TIGR00554       213 WYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKE--INWLNLKQNILPTR--ERASLILTKGANHAV  283 (290)
T ss_pred             HHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHH--cchhhHHhhCCCCc--ccccEEEecCCCCcE
Confidence            9999999888763          4689998887766666443  445555555 8988  789999999999986

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=100.00  E-value=8.1e-40  Score=323.85  Aligned_cols=252  Identities=19%  Similarity=0.192  Sum_probs=204.4

Q ss_pred             CCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-cCCcc--
Q 044604          156 LIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-MCPSL--  222 (476)
Q Consensus       156 l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~~~~~--  222 (476)
                      ..+|+.|+|++       |++++.         ++..+.|||| .++.+++   .+|+||.++++.++++.. .+...  
T Consensus         3 ~~~~~~~~~~~-------w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~---~iylpL~~l~~~~~~~~~~~~~~~~~   72 (283)
T COG1072           3 YSPYLIFSREQ-------WAALRASTPLTLTEEELKRLRGLNEPISLDEVE---DIYLPLSRLLQLYVEARERLFAELLR   72 (283)
T ss_pred             CcccEEechhh-------hhhhhhcCccccCHHHHHHhccCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999       999975         9999999998 4888887   999999999999998842 11111  


Q ss_pred             c-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC--CeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCc
Q 044604          223 R-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR--KSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSH  299 (476)
Q Consensus       223 ~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~--~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~  299 (476)
                      + +......|+||||+|++|+||||+|+.|+.++++++.  +|.+|.||||+++++.+++   +    +|+.+||+|+||
T Consensus        73 ~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~---~----glm~rKGfPeSy  145 (283)
T COG1072          73 FLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDE---R----GLMARKGFPESY  145 (283)
T ss_pred             HhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhh---c----cccccCCCCccc
Confidence            2 3345678999999999999999999999999999854  5999999999999998875   2    589999999999


Q ss_pred             cHHHHHHHHHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhh
Q 044604          300 DLQLSVETLTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLE  378 (476)
Q Consensus       300 D~~lL~e~L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~  378 (476)
                      |+..|.++|+.+|    +|+ .|.+|+|||..|+    ++|+. ...+ ...||||+||+++|+.+.+            
T Consensus       146 D~~~ll~fl~~vK----~~~~~v~aPvysh~~yD----~vpd~-~~v~-~~pdIlI~EG~nvLq~~~p------------  203 (283)
T COG1072         146 DVAALLRFLSDVK----AGKPDVFAPVYSHLIYD----PVPDA-FQVV-PQPDILIVEGNNVLQDGEP------------  203 (283)
T ss_pred             cHHHHHHHHHHHh----cCCCccccccccccccc----cCCCc-eeec-CCCCEEEEechhhhcCCCc------------
Confidence            9999999999995    564 5999999999986    66654 3444 5559999999999987652            


Q ss_pred             HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHhHHhhh
Q 044604          379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREA----------GNPGMSDEEVKDFVSRYLPAYHAYL  448 (476)
Q Consensus       379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~----------~~~GmS~EeV~~Fv~r~~Paye~Y~  448 (476)
                        +..++++||+ ++|||+       +.+.+.+|+++|...++..          ...-|++.++..+....|-.  .+.
T Consensus       204 --~~~~sdffDf-SIyvDa-------~~~~le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~a~~~a~~~w~~--in~  271 (283)
T COG1072         204 --WLFLSDFFDF-SIYVDA-------DEELLEERYIERFLKFGLTAFEDPASYFHNYAPLSEREAIESARAIWDN--INL  271 (283)
T ss_pred             --cccccccceE-EEEecC-------CHHHHHHHHHHHHHhcccchhhChhhHhhccCcchHHHHHHhhhhccee--ehh
Confidence              2358999999 999999       9999999999999876543          24445666666666666654  556


Q ss_pred             hhhhhc-CCCC
Q 044604          449 PTLYSE-GPNG  458 (476)
Q Consensus       449 ~~l~~~-~P~~  458 (476)
                      .++.++ .||+
T Consensus       272 ~nl~~~i~ptr  282 (283)
T COG1072         272 LNLRENILPTR  282 (283)
T ss_pred             hhhhhccCcCC
Confidence            666665 5654

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.98  E-value=1.7e-31  Score=257.67  Aligned_cols=200  Identities=20%  Similarity=0.288  Sum_probs=157.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH--cCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV--TGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTA  310 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~--~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~  310 (476)
                      ||||+|++||||||||+.|..+|+.  .+.++.+|++||||+++.++.+.       ++++.+|+|+++|++++.+.|..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~-------~~~~~~g~p~~~d~~~l~~~L~~   73 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIER-------GLMDRKGFPESYDMEALLKFLKD   73 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHh-------hhhhcCCCcccCCHHHHHHHHHH
Confidence            6999999999999999999999975  46689999999999998866542       34567799999999999999999


Q ss_pred             hhhhhcC-CceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhh
Q 044604          311 ISKLTKE-GTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFD  389 (476)
Q Consensus       311 Lk~~~k~-G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~D  389 (476)
                      |+    . ++.+.+|.|||..++    +.++. ...+ .+.+|||||||++++.+...             +..+++++|
T Consensus        74 l~----~g~~~v~~P~yd~~~~~----~~~~~-~~~~-~~~~vvIvEG~~~l~~~~~~-------------~~~l~~~~D  130 (220)
T cd02025          74 IK----SGKKNVKIPVYSHLTYD----VIPGE-KQTV-DQPDILIIEGLNVLQTGQNP-------------RLFVSDFFD  130 (220)
T ss_pred             HH----CCCCcEEccccceeccc----cCCCC-ceec-CCCCEEEECCchhcCCcccc-------------hhhHHHhCC
Confidence            95    5 578999999999864    55543 2224 67799999999999864321             334888888


Q ss_pred             hhhhccceEEEEecCCCchhHHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHhHHhhhhhhhhc--CCC
Q 044604          390 AWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREA----------GNPGMSDEEVKDFVSRYLPAYHAYLPTLYSE--GPN  457 (476)
Q Consensus       390 lw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~----------~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~--~P~  457 (476)
                      + ++|||+       +.+.+++|+++|...+++.          .++||+.+++.+|+...   |+....+....  .|+
T Consensus       131 ~-~ifvd~-------~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~i~p~  199 (220)
T cd02025         131 F-SIYVDA-------DEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREV---WKNINLKNLRENILPT  199 (220)
T ss_pred             e-EEEEEC-------CHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHH---HHHcCHHHHhhhccCC
Confidence            8 788887       7799999999998765322          14799999999999885   23344444422  576


Q ss_pred             CCCCCceEEEEeCCCCCC
Q 044604          458 GSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       458 ~a~~~~~Lvl~id~~r~v  475 (476)
                      +  ..|++||..+.+|++
T Consensus       200 ~--~~AD~ii~~~~~~~~  215 (220)
T cd02025         200 R--NRADLILEKGADHSI  215 (220)
T ss_pred             c--cceEEEEEeCCCCcE
Confidence            6  578899999999986

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.97  E-value=6.5e-32  Score=260.94  Aligned_cols=187  Identities=26%  Similarity=0.382  Sum_probs=154.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .+++||||+|+|||||||+|+.|...|+.  ..+++|++||||+..+++... +++..     .+++|+++|+++|.+.|
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D~YYk~~~~~~~~-~~~~~-----n~d~p~A~D~dLl~~~L   77 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLDDYYKDQSHLPFE-ERNKI-----NYDHPEAFDLDLLIEHL   77 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeeccccccchhhcCHh-hcCCc-----CccChhhhcHHHHHHHH
Confidence            45799999999999999999999999964  388999999999987765542 22222     24899999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|    ++|+.|.+|.||+.++.    |.++.   ....|.+||||||++++.                  ++.|++++
T Consensus        78 ~~L----~~g~~v~~P~yd~~~~~----r~~~~---i~~~p~~VVIvEGi~~l~------------------d~~lr~~~  128 (218)
T COG0572          78 KDL----KQGKPVDLPVYDYKTHT----REPET---IKVEPNDVVIVEGILLLY------------------DERLRDLM  128 (218)
T ss_pred             HHH----HcCCcccccccchhccc----ccCCc---cccCCCcEEEEecccccc------------------cHHHHhhc
Confidence            999    58999999999999865    54332   233788999999999996                  56899999


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII  467 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl  467 (476)
                      |+ ++|||+       |.+.+..||++|+..     ++|.+.+.| .+|...++|+|+.|+++...        -|++++
T Consensus       129 d~-kIfvdt-------d~D~RliRri~RD~~-----~rg~~~e~vi~qy~~~vkp~~~~fIeptk~--------~ADiii  187 (218)
T COG0572         129 DL-KIFVDT-------DADVRLIRRIKRDVQ-----ERGRDLESVIEQYVKTVRPMYEQFIEPTKK--------YADIII  187 (218)
T ss_pred             CE-EEEEeC-------CccHHHHHHHHHHHH-----HhCCCHHHHHHHHHHhhChhhhhccCcccc--------cceEEe
Confidence            99 999998       899999999999873     689999999 99999999999999985543        455666


Q ss_pred             EeCCCC
Q 044604          468 EIDDGR  473 (476)
Q Consensus       468 ~id~~r  473 (476)
                      --...+
T Consensus       188 p~~~~n  193 (218)
T COG0572         188 PSGGKN  193 (218)
T ss_pred             ecCCcc
Confidence            555433

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.97  E-value=1.7e-30  Score=243.76  Aligned_cols=187  Identities=29%  Similarity=0.446  Sum_probs=147.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCC----eEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRK----SATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~----v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      ||||+|+|||||||||+.|...|++.|..    +.++++|+||.+.....+....   +..+. ++.|+++|++++.+.|
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~-~~~p~a~d~~~l~~~l   76 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRG---ENRYN-FDHPDAFDFDLLKEDL   76 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHC---TTTSS-TTSGGGBSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhcc---ccccC-CCCccccCHHHHHHHH
Confidence            79999999999999999999999987766    7889999999876654443221   11223 3789999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|+    +|+.+.+|.|||.+++    +.+   |..+..|.+||||||+|+++.                  +.+++++
T Consensus        77 ~~L~----~g~~i~~p~yd~~~~~----~~~---~~~~~~~~~ivIvEG~~~l~~------------------~~l~~l~  127 (194)
T PF00485_consen   77 KALK----NGGSIEIPIYDFSTGD----RDP---WIIIISPSDIVIVEGIYALYD------------------EELRDLF  127 (194)
T ss_dssp             HHHH----TTSCEEEEEEETTTTE----EEE---EEEEEES-SEEEEEETTTTSS------------------HCHGGG-
T ss_pred             HHHh----CCCccccccccccccc----cee---eeeecCCCCEEEEcccceeee------------------eeecccc
Confidence            9994    7889999999998854    332   456667889999999999963                  3488999


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIE  468 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~  468 (476)
                      |+ ++|||+       +.+..+.||++|+..     .+|.+.|++.+...+++|.|+.|+.+....        |++||.
T Consensus       128 D~-~ifld~-------~~~~~l~Rri~RD~~-----~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~--------ADivi~  186 (194)
T PF00485_consen  128 DL-KIFLDA-------DEDLRLERRIQRDVA-----ERGRSPEEVIAQYERVRPGYERYIEPQKER--------ADIVIP  186 (194)
T ss_dssp             SE-EEEEEE--------HHHHHHHHHHHHHH-----HS-S-HHHHHHHHHTHHHHHHHCTGGGGGG---------SEEEE
T ss_pred             ee-EEEecc-------cHHHHHHHHhhhhcc-----ccCCcceeEEEEeecCChhhhhheeccccc--------cEEEEC
Confidence            98 888887       889999999999974     579999999777779999999999887643        458888


Q ss_pred             eCCCC
Q 044604          469 IDDGR  473 (476)
Q Consensus       469 id~~r  473 (476)
                      .....
T Consensus       187 ~~~~~  191 (194)
T PF00485_consen  187 SGPTN  191 (194)
T ss_dssp             SCTSS
T ss_pred             CCCCc
Confidence            76654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PTZ00301 uridine kinase; Provisional

Probab=99.96  E-value=7.1e-30  Score=245.62  Aligned_cols=186  Identities=22%  Similarity=0.286  Sum_probs=146.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCC-eEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV-TGRK-SATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~-v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .++|||+|+|||||||||+.|...|.. .|.. +.++++|+||++..+......     +. ..+|.|+|+|+++|.+.|
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~-----~~-~~~d~p~a~D~~~l~~~l   76 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESER-----AY-TNYDHPKSLEHDLLTTHL   76 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHh-----cC-CCCCChhhhCHHHHHHHH
Confidence            489999999999999999999877743 4554 568999999998754433211     12 345999999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|    ++|+.+.+|.||+..++    +....  ..+ .|.+||||||+++++                  +++|++++
T Consensus        77 ~~L----~~g~~i~~P~yd~~~~~----~~~~~--~~i-~p~~ViIvEGi~~l~------------------~~~l~~l~  127 (210)
T PTZ00301         77 REL----KSGKTVQIPQYDYVHHT----RSDTA--VTM-TPKSVLIVEGILLFT------------------NAELRNEM  127 (210)
T ss_pred             HHH----HcCCcccCCCcccccCC----cCCce--EEe-CCCcEEEEechhhhC------------------CHHHHHhC
Confidence            999    47889999999998864    33321  344 567999999999985                  35689999


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVK-DFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII  467 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~-~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl  467 (476)
                      |+ ++|||+       +.++.+.||++|+.+     .+|.+.+++. .|.+++.|.+..|+++...        .|++||
T Consensus       128 D~-~ifvd~-------~~d~~~~Rr~~Rd~~-----~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~--------~ADiIi  186 (210)
T PTZ00301        128 DC-LIFVDT-------PLDICLIRRAKRDMR-----ERGRTFESVIEQYEATVRPMYYAYVEPSKV--------YADIIV  186 (210)
T ss_pred             CE-EEEEeC-------ChhHHHHHHHhhhHH-----hcCCCHHHHHHHHHHhhcccHHHHcCcccc--------CCcEEE
Confidence            99 888887       889999999999873     4799999995 5888899999999887653        455887


Q ss_pred             EeCCC
Q 044604          468 EIDDG  472 (476)
Q Consensus       468 ~id~~  472 (476)
                      .-+.+
T Consensus       187 ~~~~~  191 (210)
T PTZ00301        187 PSWKD  191 (210)
T ss_pred             cCCCc
Confidence            64443

>PLN02348 phosphoribulokinase

Probab=99.95  E-value=1.5e-27  Score=247.58  Aligned_cols=185  Identities=21%  Similarity=0.327  Sum_probs=145.6

Q ss_pred             eHHHHHHHHHhhhhcCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC---------------CCeEEEecc
Q 044604          204 TYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTG---------------RKSATISID  268 (476)
Q Consensus       204 PL~~~l~~~v~~~~~~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G---------------~~v~vISlD  268 (476)
                      |+..|+......            ..+|+||||+|+|||||||||+.|..+|+..+               ..+.+|++|
T Consensus        34 ~~~~~~~~~~~~------------~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lD  101 (395)
T PLN02348         34 PAASSVVVALAA------------DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD  101 (395)
T ss_pred             chhHHHHHhhcc------------CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcc
Confidence            888777665222            35789999999999999999999999997532               368899999


Q ss_pred             ccccCH-HHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceec
Q 044604          269 DFYLTA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIE  347 (476)
Q Consensus       269 DFYl~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~  347 (476)
                      |||+.. ..+..    ...+    . ..|+++|+++|.+.|.+|    ++|+.+.+|+|||.+.    +..+   +..| 
T Consensus       102 DYh~~dr~~r~~----~g~t----~-ldP~a~dfDll~~~L~~L----k~G~~I~~PiYDh~tg----~~~~---~e~I-  160 (395)
T PLN02348        102 DYHSLDRTGRKE----KGVT----A-LDPRANNFDLMYEQVKAL----KEGKAVEKPIYNHVTG----LLDP---PELI-  160 (395)
T ss_pred             cccCCChhhHhh----cCCc----c-CCcccccHHHHHHHHHHH----HCCCcEEeeccccCCC----CcCC---cEEc-
Confidence            999753 33222    1111    1 358999999999999999    4899999999999873    2333   2345 


Q ss_pred             CCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCC
Q 044604          348 GPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPG  427 (476)
Q Consensus       348 ~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~G  427 (476)
                      .|.+||||||+++++.                  +.+++++|+ ++|||+       +.+..+.||++|+.+     .+|
T Consensus       161 ~p~~VVIVEGlh~L~~------------------e~lr~l~D~-~IyVd~-------~~dvrl~RRI~RD~~-----eRG  209 (395)
T PLN02348        161 EPPKILVIEGLHPMYD------------------ERVRDLLDF-SIYLDI-------SDDVKFAWKIQRDMA-----ERG  209 (395)
T ss_pred             CCCcEEEEechhhccC------------------ccccccCcE-EEEEEC-------CHHHHHHHHHHhhHh-----hcC
Confidence            6789999999999863                  347788888 777776       789999999999863     479


Q ss_pred             CCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604          428 MSDEEVKDFVSRYLPAYHAYLPTLY  452 (476)
Q Consensus       428 mS~EeV~~Fv~r~~Paye~Y~~~l~  452 (476)
                      ++.|+|.+.++..+|.|+.|+.+..
T Consensus       210 ~S~EeV~~~i~ar~pd~~~yI~pqk  234 (395)
T PLN02348        210 HSLESIKASIEARKPDFDAYIDPQK  234 (395)
T ss_pred             CCHHHHHHHHHhcCcchhhhccccc
Confidence            9999998888889999999997655

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.95  E-value=2e-27  Score=236.40  Aligned_cols=181  Identities=20%  Similarity=0.264  Sum_probs=143.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHHH---HHcccCCccccccCC--CCCccHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAKL---REANRGNALLEFRGN--AGSHDLQLSVE  306 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~l---a~~~p~npLl~~rG~--P~t~D~~lL~e  306 (476)
                      ||||+|+|||||||+++.|...|+..|.++++|++|+||+ ++.++++.   ++....|  |   ++  |+++|+++|.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~n--f---dHf~PeAnd~dlL~~   75 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRN--F---SHFGPEANLFDLLEE   75 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCC--C---CCCCcccccHHHHHH
Confidence            6999999999999999999999988888999999999998 44343321   1111122  2   55  99999999999


Q ss_pred             HHHHhhhhhcCCceEEeeccccc-----cccC-CCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604          307 TLTAISKLTKEGTKMKLPRYDKS-----AYNG-RGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV  380 (476)
Q Consensus       307 ~L~~Lk~~~k~G~~v~iP~YD~s-----~~~G-~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v  380 (476)
                      .|++|    ++|+.++.|+|||.     .|+. .|.+.   .|..+..|.||||+||++.++.-               .
T Consensus        76 ~l~~L----~~g~~i~~p~Y~h~~~~~~~~~~~~gtft---~~~~~~~p~dvIivEGLhg~~~~---------------~  133 (277)
T cd02029          76 LFRTY----GETGRGRSRYYLHSDEEAAPFNQEPGTFT---PWEDLPEDTDLLFYEGLHGGVVT---------------E  133 (277)
T ss_pred             HHHHH----HcCCCcccceeeccccccccccCCCCccC---CcccccCCCcEEEECCCCccccc---------------c
Confidence            99999    58999999999984     2321 12232   36665588999999999976421               2


Q ss_pred             hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604          381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      +++|++++|+ ++|||.       +.+..+.||++|+.+     .||+|.|+|.+-+.+.+|.|..|+.+.+.
T Consensus       134 ~~~lr~~~Dl-kIfVd~-------~~dlr~irRI~RD~~-----ERGrs~EsVi~qilrrmpdy~~yI~PQ~~  193 (277)
T cd02029         134 GYNVAQHADL-LVGVVP-------IINLEWIQKIHRDTA-----ERGYSAEAVMDTILRRMPDYINYICPQFS  193 (277)
T ss_pred             cHHHHHhCCe-EEEecC-------cHHHHHHHHHHhhhH-----hhCCCHHHHHHHHHHhCchHHhhCCcccc
Confidence            4679999999 999987       788999999999973     68999999977777777999999988873

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=99.94  E-value=7.4e-27  Score=233.80  Aligned_cols=188  Identities=19%  Similarity=0.237  Sum_probs=145.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHHH---HHcccCCccccccCCCCCccHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAKL---REANRGNALLEFRGNAGSHDLQLS  304 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~l---a~~~p~npLl~~rG~P~t~D~~lL  304 (476)
                      +++.+|||+|+|||||||+|+.|..+|+..+.++++|++|+||. ++.++...   +++...|  |+..| |+++|+++|
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~n--fdhf~-PdAnd~dlL   79 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRH--FSHFG-PEANLFDEL   79 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCC--CCCCC-CCcccHHHH
Confidence            46789999999999999999999999987788899999999996 66665331   1121112  32222 999999999


Q ss_pred             HHHHHHhhhhhcCCceEEeeccccc-----cccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhH
Q 044604          305 VETLTAISKLTKEGTKMKLPRYDKS-----AYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLET  379 (476)
Q Consensus       305 ~e~L~~Lk~~~k~G~~v~iP~YD~s-----~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~  379 (476)
                      .+.|++|+    +|+.++.|.|+|+     .|+.....  -..|..+..|.||||+||++.++..               
T Consensus        80 ~~~l~~l~----~~~~g~~~~Y~h~f~~a~~~~~~~gt--ft~~e~i~~p~dvIivEGLh~~~~~---------------  138 (290)
T PRK15453         80 EQLFREYG----ETGTGKTRKYLHTDDEAVPYNQVPGT--FTPWEPLPEGTDLLFYEGLHGGVVT---------------  138 (290)
T ss_pred             HHHHHHHh----cCCCcceeeccccccccccCCCCCCc--cCCceEecCCCcEEEEecccccccc---------------
Confidence            99999994    7778888999753     24322111  1237788778999999999998531               


Q ss_pred             HhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604          380 VNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       380 vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      ...+|++++|+ ++|||.       +.+..+.||++|+.+     +||+|.|+|.+-+.+.+|.|..|+.+.+.
T Consensus       139 ~~~~lr~~~Dl-kIfVdp-------~~dlr~irRI~RD~~-----ERGrs~EsVi~qilrrmPdy~~yI~PQ~~  199 (290)
T PRK15453        139 DQVDVAQHVDL-LIGVVP-------IVNLEWIQKIHRDTS-----ERGYSREAVMDTILRRMPDYINYITPQFS  199 (290)
T ss_pred             ccHHHHHhCCe-eEeeCC-------cHhHHHHHHHHhhhH-----hhCCCHHHHHHHHHHhCChHhhhCCCCcc
Confidence            13568999999 888887       778888999999973     68999999977777778999999988773

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.93  E-value=7.1e-26  Score=211.71  Aligned_cols=166  Identities=24%  Similarity=0.281  Sum_probs=129.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhh
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS  312 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk  312 (476)
                      ||||+|++||||||||+.|+..|...|.++.+|++||||++..  ...  ..     ....+.|..+|++++.+.|..| 
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~--~~~--~~-----~g~~d~~~~~d~~~l~~~l~~l-   70 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRK--TPR--DE-----DGNYDFESILDLDLLNKNLHDL-   70 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcc--ccc--cc-----CCCCCCCccccHHHHHHHHHHH-
Confidence            6999999999999999999999988889999999999999871  111  11     1123677789999999999999 


Q ss_pred             hhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhh
Q 044604          313 KLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWD  392 (476)
Q Consensus       313 ~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~  392 (476)
                         ++|+.+.+|.||+.++.    +....  .....|.+||||||+++++                   ++|++++|+ +
T Consensus        71 ---~~~~~~~~p~yd~~~~~----~~~~~--~~~~~~~~vIIvEG~~~l~-------------------~~l~~~~d~-~  121 (179)
T cd02028          71 ---LNGKEVELPIYDFRTGK----RRGYR--KLKLPPSGVVILEGIYALN-------------------ERLRSLLDI-R  121 (179)
T ss_pred             ---HCCCeeecccceeECCc----cCCCc--eEEeCCCCEEEEecHHhcC-------------------HhHHhhcCE-E
Confidence               47889999999998854    33211  2233678999999999984                   458888888 7


Q ss_pred             hccceEEEEecCCCch-hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhh
Q 044604          393 KFIKAWIVIKIKDPSC-VYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPT  450 (476)
Q Consensus       393 ifVDa~I~L~~~d~d~-v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~  450 (476)
                      +|||+       +.+. .+.||+.|+.     ..+|.+.+++... ..+.|+++.++.+
T Consensus       122 I~vd~-------~~~~~rl~rri~RD~-----~~rg~~~~~~i~~-~~~~~~~~~~~~~  167 (179)
T cd02028         122 VAVSG-------GVHLNRLLRRVVRDI-----QFRGYSAELTILM-WPSVPSGEEFIIP  167 (179)
T ss_pred             EEEeC-------CccHHHHHHHHHHhH-----HhhCCCHHHHhhh-cccccCchhhcCC
Confidence            77776       6776 8999999987     3679999999665 3467777766644

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.91  E-value=1.2e-23  Score=198.97  Aligned_cols=185  Identities=23%  Similarity=0.298  Sum_probs=139.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .+|++|||+|++|||||||++.|...|.  +..+.+|++|+||.+..+.... ...    .+ .++.|+++|++.+.+.|
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~~~~~~~~~-~~~----~~-~~~~~~~~~~~~l~~~l   75 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYKDQSHLSFE-ERV----KT-NYDHPDAFDHDLLIEHL   75 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCccccCcccCCHH-Hhc----cc-CccCcccccHHHHHHHH
Confidence            5789999999999999999999999883  4578999999999876432111 110    01 23789999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|    +.|+.+.+|.||+.++.    +.+..  ..+ .+.++||+||++++..                  +.+.+++
T Consensus        76 ~~l----~~~~~v~~p~~d~~~~~----~~~~~--~~~-~~~~~vivEg~~l~~~------------------~~~~~~~  126 (209)
T PRK05480         76 KAL----KAGKAIEIPVYDYTEHT----RSKET--IRV-EPKDVIILEGILLLED------------------ERLRDLM  126 (209)
T ss_pred             HHH----HcCCccccCcccccccc----cCCCe--EEe-CCCCEEEEEeehhcCc------------------hhHhhhh
Confidence            999    47889999999998854    33221  233 5669999999999852                  3466777


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII  467 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl  467 (476)
                      |+ .+|||+       +.+...+|+++|+.     ..+|.+.+++ ..|.....|.|+.|+++...        .|++||
T Consensus       127 d~-~I~v~~-------~~~~~~~R~~~Rd~-----~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~--------~AD~vI  185 (209)
T PRK05480        127 DI-KIFVDT-------PLDIRLIRRLKRDV-----NERGRSLESVINQYLSTVRPMHLQFIEPSKR--------YADIII  185 (209)
T ss_pred             ce-eEEEeC-------ChhHHHHHHHhhcc-----hhcCCCHHHHHHHHHHhhhhhHHhhccHhhc--------ceeEEe
Confidence            76 666665       67888888998875     3578999888 66777788999988776542        356888


Q ss_pred             EeCC
Q 044604          468 EIDD  471 (476)
Q Consensus       468 ~id~  471 (476)
                      ..+.
T Consensus       186 ~~~~  189 (209)
T PRK05480        186 PEGG  189 (209)
T ss_pred             cCCC
Confidence            7653

>PRK06696 uridine kinase; Validated

Probab=99.90  E-value=2.5e-23  Score=199.75  Aligned_cols=195  Identities=20%  Similarity=0.203  Sum_probs=141.7

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCC-CCCccHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGN-AGSHDLQLSVE  306 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~-P~t~D~~lL~e  306 (476)
                      ...|++|||+|++||||||||+.|+..|...|..++++++||||++..++.+....       ...|+ ++++|+++|.+
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~-------~~~g~~~~~~d~~~L~~   91 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRE-------SAEGYYEDAYDYTALRR   91 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCC-------ChhhcCccccCHHHHHH
Confidence            35799999999999999999999999998888889999999999998877653211       12232 48999999998


Q ss_pred             HHHHhhhhhcCC-ceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHh
Q 044604          307 TLTAISKLTKEG-TKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLE  385 (476)
Q Consensus       307 ~L~~Lk~~~k~G-~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~  385 (476)
                      .|..+..  ..| ..+..|.||+....    +... .+..+ ++.+|||+||.+++.                   ..+.
T Consensus        92 ~l~~~l~--~~~~~~~~~~~~d~~~~~----~~~~-~~~~~-~~~~vviveg~~l~~-------------------~~~~  144 (223)
T PRK06696         92 LLLDPLG--PNGDRQYRTASHDLKTDI----PVHN-PPLLA-APNAVLIVDGTFLLR-------------------PELR  144 (223)
T ss_pred             HHHhhcc--CCCceeEeeeeeccccCc----ccCC-Cceec-CCCCEEEEecHHHhh-------------------hhHH
Confidence            8765321  123 36888899997632    2211 12233 566899999999863                   3466


Q ss_pred             hhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceE
Q 044604          386 AYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTL  465 (476)
Q Consensus       386 dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~L  465 (476)
                      +++|+ .+||++       +.+...+|+.+|+..     .+|..++....|.++|+|+++.|+....   | +  ..|++
T Consensus       145 ~~~d~-~i~v~~-------~~e~~~~R~~~Rd~~-----~~g~~~~~~~~~~~r~~~~~~~y~~~~~---p-~--~~ADi  205 (223)
T PRK06696        145 DLWDY-KIFLDT-------DFEVSRRRGAKRDTE-----AFGSYEEAEKMYLARYHPAQKLYIAEAN---P-K--ERADV  205 (223)
T ss_pred             hhCCE-EEEEEC-------CHHHHHHHHHHhhhh-----hhCCchHHHHHHHHHHhHHHHHHHhhcC---h-H--hhCeE
Confidence            77776 566665       678888888888753     3454556669999999999998886553   4 2  45779


Q ss_pred             EEEeCCCCCC
Q 044604          466 IIEIDDGRNP  475 (476)
Q Consensus       466 vl~id~~r~v  475 (476)
                      ||.-+..++|
T Consensus       206 vi~n~~~~~p  215 (223)
T PRK06696        206 VIDNSDPANP  215 (223)
T ss_pred             EEECCCCCCC
Confidence            9877775554

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.90  E-value=1.7e-23  Score=226.12  Aligned_cols=166  Identities=19%  Similarity=0.282  Sum_probs=133.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .+++||||+|++||||||||+.|...+    ..+.+|++|||+.....   .  .  .|     .+.|+++|++.+.+.|
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~~~~~~---i--~--~n-----fD~P~a~D~d~L~enL  126 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYNDSSRI---I--D--GN-----FDDPRLTDYDTLLDNI  126 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEcceecchhh---h--C--cc-----CCChhhcchhHHHHHH
Confidence            468999999999999999999999886    25789999999854321   1  1  11     2679999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|    ++|+.+.+|.||+.+++    +....  .....|.+||||||+|++.                   +.|++++
T Consensus       127 ~~L----r~GksV~iPiYDf~t~~----r~~~~--~i~v~p~~VVIVEGIyaL~-------------------~~Lr~Ll  177 (656)
T PLN02318        127 HDL----KAGKSVQVPIYDFKSSS----RVGYR--TLEVPSSRIVIIEGIYALS-------------------EKLRPLL  177 (656)
T ss_pred             HHH----hCCCceecCccccccCc----ccCCc--eeecCCCcEEEEechhhcc-------------------HhHHhhC
Confidence            999    58999999999998754    43221  1223678999999999984                   4689999


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhh
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLY  452 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~  452 (476)
                      |+ ++|||+       +.+..+.||+.|+..     .+|.+.+++ .+|...++|+|+.|+++..
T Consensus       178 Dl-kIFVDt-------dvDirL~RRI~RD~~-----eRGrs~EsVi~q~~~~VkP~y~~FIeP~k  229 (656)
T PLN02318        178 DL-RVSVTG-------GVHFDLVKRVLRDIQ-----RAGQEPEEIIHQISETVYPMYKAFIEPDL  229 (656)
T ss_pred             CE-EEEEcC-------CccHHHHHHHHHHHH-----HhCCCHHHHHHHHHHhhcchHHHHhCcch
Confidence            98 888886       677888899999873     468899988 7888999999999998754

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.90  E-value=2.6e-24  Score=204.08  Aligned_cols=177  Identities=18%  Similarity=0.180  Sum_probs=131.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhh
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS  312 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk  312 (476)
                      ||||+|++||||||+|+.|+..+.    .+.+|++||||++..++.... .    + +..+|.|+++|+++|.+.|..|+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~~~~~~~~~~-~----~-~~~~d~p~a~D~~~l~~~L~~l~   70 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFKPEDEIPVDE-N----G-FKQWDVLEALDMEAMMSTLDYWR   70 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccCCcccCChHh-h----c-CCCCCCcccccHHHHHHHHHHHH
Confidence            699999999999999999999873    478999999999887554321 1    1 33569999999999999999995


Q ss_pred             hhhcCCceEEeeccccccccCCCCC---------CCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHH
Q 044604          313 KLTKEGTKMKLPRYDKSAYNGRGDR---------ADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKN  383 (476)
Q Consensus       313 ~~~k~G~~v~iP~YD~s~~~G~gDr---------~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~  383 (476)
                          +|+.+..|.+++...+.....         ... . ..+..+.+||||||.+++..                  +.
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~iViVEG~~l~~~------------------~~  126 (187)
T cd02024          71 ----ETGHFPKFLRSHGNENDPEKEFIEDAQIEETKA-D-LLGAEDLHILIVDGFLLYNY------------------KP  126 (187)
T ss_pred             ----cCCCccCcccCccccccccccccchhhhhhccc-c-ccccCCCcEEEEechHhcCC------------------HH
Confidence                666666666665443210000         000 0 12336779999999998753                  45


Q ss_pred             HhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhc
Q 044604          384 LEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSE  454 (476)
Q Consensus       384 L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~  454 (476)
                      +++++|+ ++|||+       +.+.+.+||++|+...   -..|...+-...|.+.+||+|..++..++++
T Consensus       127 l~~l~D~-~Ifvd~-------~~d~~~~Rr~~R~~~~---~~~~~w~Dp~~yf~~~v~p~y~~~~~~~~~~  186 (187)
T cd02024         127 LVDLFDI-RYFLRV-------PYETCKRRREARTGYV---TLEGFWPDPPGYFDGHVWPMYLKHHAEMFEN  186 (187)
T ss_pred             HHhhcCc-eeEecC-------CHHHHHHHHHHcCCcc---ccCcccCCCCcccccccchhHHHHHHHHhhc
Confidence            8889898 888887       8899999999886421   1234445566889999999999999999875

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR00235 udk uridine kinase

Probab=99.89  E-value=2.6e-22  Score=190.32  Aligned_cols=188  Identities=23%  Similarity=0.290  Sum_probs=139.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      ++..+|||+|++|||||||++.|..++..  ..+.++++|+||.+..++.... ..  +  + ..+.|+++|.+++.+.|
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~~~~~~~~~~-~~--~--~-~~~~~~~~~~~~l~~~l   75 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYYKDQSHLEMAE-RK--K--T-NFDHPDAFDNDLLYEHL   75 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccccccChhhCCHHH-hc--C--C-CCCCccHhHHHHHHHHH
Confidence            56789999999999999999999998863  4678999999998765443221 11  1  1 23679999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|    +.|+.+.+|.||+.+++    +..+  ...+ .+.+++|+||+++++.                  +.+.+++
T Consensus        76 ~~l----~~g~~v~~p~yd~~~~~----~~~~--~~~~-~~~~~vIieG~~~~~~------------------~~~~~~~  126 (207)
T TIGR00235        76 KNL----KNGSPIDVPVYDYVNHT----RPKE--TVHI-EPKDVVILEGIMPLFD------------------ERLRDLM  126 (207)
T ss_pred             HHH----HCCCCEecccceeecCC----CCCc--eEEe-CCCCEEEEEehhhhch------------------HhHHHhC
Confidence            999    47889999999998754    3222  2334 5679999999999852                  3456666


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII  467 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl  467 (476)
                      |+ .+|||+       +.+..+.|+++|+..     .+|.+.+++ ..|....+|.|..|+.+..        ..|++||
T Consensus       127 d~-~I~v~~-------~~~~~l~R~~~R~~~-----~rg~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~Ad~vi  185 (207)
T TIGR00235       127 DL-KIFVDT-------PLDIRLIRRIERDIN-----ERGRSLDSVIDQYRKTVRPMYEQFVEPTK--------QYADLII  185 (207)
T ss_pred             CE-EEEEEC-------ChhHHHHHHHHHHHH-----hhCCCHHHHHHHHHHhhhhhHHHhCcccc--------cccEEEE
Confidence            65 455555       678888889988753     357787776 6677777888887765443        3566999


Q ss_pred             EeCCCCC
Q 044604          468 EIDDGRN  474 (476)
Q Consensus       468 ~id~~r~  474 (476)
                      ..+.+|.
T Consensus       186 ~~~~~~~  192 (207)
T TIGR00235       186 PEGGRNE  192 (207)
T ss_pred             cCCCCch
Confidence            8777764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.88  E-value=5.6e-22  Score=185.74  Aligned_cols=183  Identities=21%  Similarity=0.329  Sum_probs=135.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhh
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS  312 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk  312 (476)
                      ||||+|++|||||||++.|..+|  .+.++.++++|+||.+..........      ...+++|+++|++++.+.|..| 
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~l-   71 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERK------NNNYDHPDAFDFDLLISHLQDL-   71 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhc------cCCCCCCCcccHHHHHHHHHHH-
Confidence            69999999999999999999998  35689999999999765433322111      1234789999999999999999 


Q ss_pred             hhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhhh
Q 044604          313 KLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWD  392 (476)
Q Consensus       313 ~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw~  392 (476)
                         +.|+.+.+|.||++++.    +....  ..+ .+.+++|+||++++..                  +.+.+++|+ .
T Consensus        72 ---~~~~~~~~p~~d~~~~~----~~~~~--~~i-~~~~~vI~eg~~~~~~------------------~~~~~~~d~-~  122 (198)
T cd02023          72 ---KNGKSVEIPVYDFKTHS----RLKET--VTV-YPADVIILEGILALYD------------------KELRDLMDL-K  122 (198)
T ss_pred             ---HCCCCEeccccccccCc----ccCCc--eec-CCCCEEEEechhhccc------------------hhHHhhcCe-E
Confidence               47888999999998854    33322  233 5669999999999853                  235566666 5


Q ss_pred             hccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEEeCC
Q 044604          393 KFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIEIDD  471 (476)
Q Consensus       393 ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~id~  471 (476)
                      +|||+       +.+..++||++|+..     .+|++.+++ ..|..+..|.|..|+.+..        ..+++||..+.
T Consensus       123 i~v~~-------~~~~~~~R~~~Rd~~-----~rg~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~aD~ii~~~~  182 (198)
T cd02023         123 IFVDT-------DADVRLIRRIERDIV-----ERGRDLESVINQYLKFVKPMHEQFIEPTK--------RYADVIIPRGG  182 (198)
T ss_pred             EEEEC-------ChhHHHHHHHHHHhh-----hcCCCHHHHHHHHHHhhhhhHHHhCccch--------hceeEEECCCC
Confidence            55555       677888999998752     478888877 7777888899888876532        34568887655


Q ss_pred             CC
Q 044604          472 GR  473 (476)
Q Consensus       472 ~r  473 (476)
                      +.
T Consensus       183 ~~  184 (198)
T cd02023         183 DN  184 (198)
T ss_pred             Cc
Confidence            43

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07429 phosphoribulokinase; Provisional

Probab=99.88  E-value=6.3e-22  Score=202.10  Aligned_cols=171  Identities=20%  Similarity=0.302  Sum_probs=133.8

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC-HHHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT-AEGQAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~-~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      ..+|++|||+|++|||||||++.|..+|...  .+.++++||||.. ..++..    .+..+     -.|+++|++++.+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~~~~~~~~r~~----~g~~~-----l~p~~~~~d~l~~   73 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDYHSYDRKQRKE----LGITA-----LDPRANNLDIMYE   73 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecccccCCHHHHHh----cCCcc-----cCccchHHHHHHH
Confidence            3578999999999999999999999998532  4678999999854 233222    11111     1488999999999


Q ss_pred             HHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604          307 TLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA  386 (476)
Q Consensus       307 ~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d  386 (476)
                      .|..|    +.|+.+..|.||+.+.    ...+   +..+ .|.+||||||+++++.                  +.+++
T Consensus        74 ~l~~L----~~g~~I~~P~yd~~~g----~~~~---~~~i-~p~~iVIvEG~~~l~~------------------~~lr~  123 (327)
T PRK07429         74 HLKAL----KTGQPILKPIYNHETG----TFDP---PEYI-EPNKIVVVEGLHPLYD------------------ERVRE  123 (327)
T ss_pred             HHHHH----HCCCceecceeecCCC----CcCC---cEec-CCCcEEEEechhhcCc------------------HhHHh
Confidence            99999    4899999999999862    2222   2344 5679999999998753                  34778


Q ss_pred             hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604          387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLY  452 (476)
Q Consensus       387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~  452 (476)
                      ++|+ ++|||+       +.+....||++|+.+     .+|++.|++.+.+...+|.++.|+.+..
T Consensus       124 ~~D~-~I~Vda-------~~evr~~Rri~Rd~~-----rrG~s~eei~~~i~~r~pd~~~yI~P~k  176 (327)
T PRK07429        124 LYDF-KVYLDP-------PEEVKIAWKIKRDMA-----KRGHTYEQVLAEIEAREPDFEAYIRPQR  176 (327)
T ss_pred             hCCE-EEEEEC-------CHHHHHHHHHHHHHh-----hcCCCHHHHHHHHHHhCccHhhhhcccc
Confidence            8888 777776       889999999999863     4689999999999999999999988754

>PRK07667 uridine kinase; Provisional

Probab=99.87  E-value=1.1e-21  Score=185.00  Aligned_cols=176  Identities=19%  Similarity=0.276  Sum_probs=123.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH-H
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET-L  308 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~-L  308 (476)
                      .+++|||+|++||||||+|+.|...|+..|.++.++++||||.+...+...  .++  +....  +..++|++.|.+. +
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~--~~~--~~~~~--~~~~~d~~~L~~~v~   89 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHT--GFE--EWYEY--YYLQWDIEWLRQKFF   89 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhc--CCC--chhhh--hhhhhhHHHHHHHHH
Confidence            459999999999999999999999998889999999999999876643221  110  01111  1235788888754 5


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|    +.|+.+..|.||+....    +..  .+..+ ++.+||||||++++.                   ..+.+++
T Consensus        90 ~~L----~~~~~i~~P~~d~~~~~----~~~--~~~~~-~~~~vvIvEG~~l~~-------------------~~~~~~~  139 (193)
T PRK07667         90 RKL----QNETKLTLPFYHDETDT----CEM--KKVQI-PIVGVIVIEGVFLQR-------------------KEWRDFF  139 (193)
T ss_pred             Hhh----cCCCeEEEeeecccccc----ccc--cceec-CCCCEEEEEehhhhh-------------------hhHHhhc
Confidence            878    47889999999998632    222  12234 567999999999652                   3466666


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII  467 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl  467 (476)
                      |+ .+|||+       +++..++|.++|+            .+...+|..+|+|+++.|+....   | .  ..|++||
T Consensus       140 d~-~v~V~~-------~~~~~~~R~~~r~------------~~~~~~~~~r~~~a~~~y~~~~~---~-~--~~ad~i~  192 (193)
T PRK07667        140 HY-MVYLDC-------PRETRFLRESEET------------QKNLSKFKNRYWKAEDYYLETES---P-K--DRADLVI  192 (193)
T ss_pred             eE-EEEEEC-------CHHHHHHHHhccc------------HhHHHHHHHHhHHHHHHHHhhcC---h-H--hhCcEEe
Confidence            66 556665       5666655555432            33457899999999999987654   3 2  3456776

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.87  E-value=5.3e-21  Score=184.36  Aligned_cols=190  Identities=21%  Similarity=0.277  Sum_probs=136.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEE-EeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSAT-ISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~v-ISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      .+|++|||+|++|||||||++.|..++...+..+.+ |++|+||.+...+...       +.+..+|.|+++|++.+.++
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~-------g~~~~~~~~~~~d~~~~~~~  103 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAH-------GLRPRKGAPETFDVAGLAAL  103 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhc-------ccccccCCCCCCCHHHHHHH
Confidence            578999999999999999999999999887777777 9999999998755431       34455789999999999999


Q ss_pred             HHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604          308 LTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA  386 (476)
Q Consensus       308 L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d  386 (476)
                      |..|+    .|+ .+.+|.||+....    ...+  +..+.++.+|||+||.++++...              ....+.+
T Consensus       104 l~~l~----~~~~~i~~P~yD~~~~~----~~~~--~~~~~~~~~ivIvEG~~~l~~~~--------------~~~~l~~  159 (229)
T PRK09270        104 LRRLR----AGDDEVYWPVFDRSLED----PVAD--AIVVPPTARLVIVEGNYLLLDEE--------------PWRRLAG  159 (229)
T ss_pred             HHHHH----cCCCceecccCCcccCC----CCCC--ceEecCCCCEEEEcCcceeeccc--------------cHHHHHh
Confidence            99995    565 8999999998743    2222  23444456899999999986421              1133555


Q ss_pred             hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHhHHhhhhhhhhcCCCCCCCCceE
Q 044604          387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVS-RYLPAYHAYLPTLYSEGPNGSDPEHTL  465 (476)
Q Consensus       387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~-r~~Paye~Y~~~l~~~~P~~a~~~~~L  465 (476)
                      ++|+ .+|||      + +.+...+|..+|..      ..|++++++.+.+. +.+|.++ |+.+.      +  ..+++
T Consensus       160 ~~D~-vi~v~------~-~~~~~~~R~~~R~~------~~g~s~~~~~~~~~~~~~~~~~-~i~~~------~--~~ad~  216 (229)
T PRK09270        160 LFDF-TIFLD------A-PAEVLRERLVARKL------AGGLSPEAAEAFVLRNDGPNAR-LVLET------S--RPADL  216 (229)
T ss_pred             hCCE-EEEEE------C-CHHHHHHHHHHHHH------hcCCCHHHHHHHHHhcChHHHH-HHHhc------C--CCCCE
Confidence            5555 44444      4 55666666666642      36999999976665 5677653 44332      2  34568


Q ss_pred             EEEeCCC
Q 044604          466 IIEIDDG  472 (476)
Q Consensus       466 vl~id~~  472 (476)
                      ||+.+..
T Consensus       217 vI~n~~~  223 (229)
T PRK09270        217 VLEMTAT  223 (229)
T ss_pred             EEEecCC
Confidence            8887643

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.87  E-value=2.3e-21  Score=193.20  Aligned_cols=166  Identities=24%  Similarity=0.402  Sum_probs=129.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC-HHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHh
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT-AEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAI  311 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~-~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~L  311 (476)
                      ||||+|++|||||||++.|..+|...  .+.+|++||||.. ..++...+    ..+     -.|++++++++.+.|+.|
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~--~~~vi~~Dd~~~~~~~~r~~~g----~~~-----~~p~~~~~d~l~~~l~~L   69 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSD--LVTVICLDDYHSLDRKGRKETG----ITA-----LDPRANNFDLMYEQLKAL   69 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCC--ceEEEECcccccCCHHHHHHhh----ccc-----ccccchhHHHHHHHHHHH
Confidence            69999999999999999999998543  4678999999964 33332211    111     148899999999999999


Q ss_pred             hhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhhhh
Q 044604          312 SKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAW  391 (476)
Q Consensus       312 k~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~Dlw  391 (476)
                          +.|+.+..|.||+.+..    ..+   +..+ .|.+||||||+++++.                  +.+++++|+ 
T Consensus        70 ----k~g~~i~~P~y~~~~~~----~~~---~~~i-~~~~ivIvEG~~~l~~------------------~~l~~~~D~-  118 (273)
T cd02026          70 ----KEGQAIEKPIYNHVTGL----IDP---PELI-KPTKIVVIEGLHPLYD------------------ERVRELLDF-  118 (273)
T ss_pred             ----HCCCCcccccccccCCC----cCC---cEEc-CCCCEEEEeeehhhCc------------------hhhhhhccE-
Confidence                47999999999998732    222   2234 5679999999998863                  357888888 


Q ss_pred             hhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604          392 DKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLY  452 (476)
Q Consensus       392 ~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~  452 (476)
                      ++|||+       +.+..++||++|+.+     .+|++.|++.+.+...+|.++.|+++..
T Consensus       119 ~I~vd~-------~~e~r~~r~i~Rd~~-----rrG~s~e~v~~~i~~r~~~~~~~I~P~~  167 (273)
T cd02026         119 SVYLDI-------SDEVKFAWKIQRDMA-----ERGHSLEDVLASIEARKPDFEAYIDPQK  167 (273)
T ss_pred             EEEEEC-------ChhHHHHHHHHHHHH-----HhCCCHHHHHHHHHhhchhHHHHhcccc
Confidence            777777       789999999999874     3689999998888778999999988754

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK06547 hypothetical protein; Provisional

Probab=99.72  E-value=4.6e-17  Score=152.29  Aligned_cols=154  Identities=17%  Similarity=0.108  Sum_probs=109.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .+|.+|+|+|++||||||+|+.|++.+     .+.++++|+||.+..++                  +  .+.+.+.+.+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~~~~~~~~~------------------~--~~~~~l~~~~   67 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDDLYPGWHGL------------------A--AASEHVAEAV   67 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeecccceecccccC------------------C--hHHHHHHHHH
Confidence            568999999999999999999999876     46789999999654321                  1  1233333333


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      .      ..|+...+| ||+.+..    + .  .|..+ .|.++||+||.+++.                   +.+++++
T Consensus        68 l------~~g~~~~~~-yd~~~~~----~-~--~~~~l-~~~~vVIvEG~~al~-------------------~~~r~~~  113 (172)
T PRK06547         68 L------DEGRPGRWR-WDWANNR----P-G--DWVSV-EPGRRLIIEGVGSLT-------------------AANVALA  113 (172)
T ss_pred             H------hCCCCceec-CCCCCCC----C-C--CcEEe-CCCCeEEEEehhhcc-------------------HHHHHHh
Confidence            2      246667778 9998632    1 1  23445 566899999999974                   3467777


Q ss_pred             h-----hhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCc
Q 044604          389 D-----AWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEH  463 (476)
Q Consensus       389 D-----lw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~  463 (476)
                      |     + .+|||+       +.+.+++|+++|+..             ...|.++|+|+++.|+....   | +  ++|
T Consensus       114 d~~g~v~-~I~ld~-------~~~vr~~R~~~Rd~~-------------~~~~~~~w~~~e~~~~~~~~---~-~--~~a  166 (172)
T PRK06547        114 SLLGEVL-TVWLDG-------PEALRKERALARDPD-------------YAPHWEMWAAQEERHFARYD---P-R--DVA  166 (172)
T ss_pred             ccCCCEE-EEEEEC-------CHHHHHHHHHhcCch-------------hhHHHHHHHHHHHHHHhcCC---C-h--hcc
Confidence            6     5 666666       778888888877631             57899999999998887763   2 3  567


Q ss_pred             eEEEE
Q 044604          464 TLIIE  468 (476)
Q Consensus       464 ~Lvl~  468 (476)
                      ++++.
T Consensus       167 d~~~~  171 (172)
T PRK06547        167 DWLGS  171 (172)
T ss_pred             EEEec
Confidence            78763

>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]

Probab=99.63  E-value=8e-16  Score=164.24  Aligned_cols=180  Identities=21%  Similarity=0.331  Sum_probs=144.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc---C--CCeEEEeccccccC--HHHHHHHHHcccCCccccccCCCCCcc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVT---G--RKSATISIDDFYLT--AEGQAKLREANRGNALLEFRGNAGSHD  300 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~---G--~~v~vISlDDFYl~--~~er~~la~~~p~npLl~~rG~P~t~D  300 (476)
                      ...|++||++|+++|||||.+..+...|.+.   |  ..+++++.|-||..  ..++.. +..+    .+.+ ++|+++|
T Consensus        41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~-a~~~----~~~f-~~pda~~  114 (473)
T KOG4203|consen   41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAK-AQEG----KYNF-DHPDAFD  114 (473)
T ss_pred             CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHH-hhhc----cccc-cCCCCcc
Confidence            4689999999999999999988888777521   2  36888999999963  333322 3332    2333 6899999


Q ss_pred             HHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604          301 LQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV  380 (476)
Q Consensus       301 ~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v  380 (476)
                      .+++...++.+    ++|..|.+|.||+.+++    +.++ .+..+ .|.+++|+||+++++                  
T Consensus       115 ~~l~~~~~~~~----~kg~~v~ip~y~~~~~~----~~~~-~~~~l-~~~~~~ilegil~~y------------------  166 (473)
T KOG4203|consen  115 FELLYLTLKNL----KKGKAVEIPVYDFVTHS----RDEE-KTIVV-YPADVIILEGILAFY------------------  166 (473)
T ss_pred             hhhHHHHHhcc----cccceeeceeeeeeccc----CCCC-ceEEe-cCCCceeehhHHHHh------------------
Confidence            99999999999    58999999999999976    3333 23455 566999999999996                  


Q ss_pred             hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhc
Q 044604          381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSE  454 (476)
Q Consensus       381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~  454 (476)
                      +++++++++. ++|+|+       |.+....||+.|+.     ..+|++.+.+ .++.+++.|+|..|+++....
T Consensus       167 d~~~~~l~~~-k~fvd~-------~~d~rla~ri~r~~-----~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~  228 (473)
T KOG4203|consen  167 DERVRDLFTM-KLFVDT-------DADVRLARRILRDI-----VERGRDLESILTQYSTFVKPAFEEFILPTKKY  228 (473)
T ss_pred             HHHHHHHhcc-eEEEec-------CcchhhHHHHhcch-----hhhcccHHHHHHHHHhhcCchHHHHhhHHHHh
Confidence            4678888888 999998       89999999999886     3578999988 899999999999999987753

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.62  E-value=2.9e-15  Score=146.64  Aligned_cols=164  Identities=19%  Similarity=0.203  Sum_probs=119.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH-------cCCCe-EEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV-------TGRKS-ATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQ  302 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-------~G~~v-~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~  302 (476)
                      ...+|++|+.|+||||++.++......       .-.++ .+|.||+|++.++++...  ++|.. --.+||.|.|||-.
T Consensus       119 ~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f--~dP~~-AharRGapwTFD~~  195 (323)
T KOG2702|consen  119 EELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLF--KDPQT-AHARRGAPWTFDSN  195 (323)
T ss_pred             hheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhh--cChHH-HHhhcCCCcccCHH
Confidence            458999999999999999988874321       12344 448999999999887764  33321 23678999999999


Q ss_pred             HHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhH
Q 044604          303 LSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNK  382 (476)
Q Consensus       303 lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~  382 (476)
                      ++.+.++-||+.  .-..+.+|.|||..    ||++++.  .-|.....|||+||.|++.+..+              ++
T Consensus       196 lfl~l~k~lkk~--t~~~iyvPsFdHa~----gDPv~Dd--icVs~~~rIvI~EGnYlLl~~~~--------------Wk  253 (323)
T KOG2702|consen  196 LFLQLCKILKKT--TIPDIYVPSFDHAL----GDPVPDD--ICVSKFTRIVILEGNYLLLDQEN--------------WK  253 (323)
T ss_pred             HHHHHHHHHhhc--CCCceecccccccc----CCCCccc--eeecccceEEEEeccEEEecCcc--------------HH
Confidence            999999999642  34589999999976    6777764  34556679999999999986442              56


Q ss_pred             HHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCC--CCHHHH
Q 044604          383 NLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPG--MSDEEV  433 (476)
Q Consensus       383 ~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~G--mS~EeV  433 (476)
                      .+.+.||. +-|||.       +.+...++-..|..      ..|  -+.+|+
T Consensus       254 di~k~~d~-k~~idV-------~~~~a~~RVa~RHl------~sGl~~t~~ea  292 (323)
T KOG2702|consen  254 DIYKTLDD-KYKIDV-------DYEAAEERVAKRHL------QSGLVTTIAEA  292 (323)
T ss_pred             HHHHHhhh-heeccc-------cHHHHHHHHHHHhh------cccccCCHHHH
Confidence            67777777 556776       66666665554443      356  456665

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=99.53  E-value=4.9e-15  Score=142.20  Aligned_cols=166  Identities=19%  Similarity=0.208  Sum_probs=108.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLT  309 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~  309 (476)
                      +.+||||+|.+.|||||||+.|++.|.    .+.+|++||||+|.+|.....     |. +..++.+++.|++.+.+.+.
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~----~~~lIhqDDFyKp~~Ei~v~~-----~n-~~~wd~~esLdm~~fl~~ia   72 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFP----GCSLIHQDDFYKPENEIEVDY-----NN-IDNWDLLESLDMEKFLEKIA   72 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHcc----CCeeeccccccCchhhhhccc-----CC-cchhcchhhhhHHHHHHHHH
Confidence            468999999999999999999999995    577999999999988655421     11 33458999999999999886


Q ss_pred             HhhhhhcCCceE--------EeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHh
Q 044604          310 AISKLTKEGTKM--------KLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVN  381 (476)
Q Consensus       310 ~Lk~~~k~G~~v--------~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn  381 (476)
                      ..-   ++...+        ..-.++|-.-          ..+.-.-...|||+||.++..                  +
T Consensus        73 ~~l---~~~~~~~~ar~~~v~~~~~~~~~~----------~~q~~~~~~~iviidGfmiy~------------------y  121 (225)
T KOG3308|consen   73 TWL---DSRHNAPEAREHLVSYANFEHYAQ----------QFQIKAYKNHIVIIDGFMIYN------------------Y  121 (225)
T ss_pred             HHh---cCccccchHhhhhhhhhHHHHHhh----------hcCcccccCcEEEEecceEEe------------------c
Confidence            541   121111        1112222110          011111345799999999984                  4


Q ss_pred             HHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604          382 KNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       382 ~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      +.+.+.+|. +      |++.+ +++.+.++|-.|         .|....+--.|.-.+||.|+.+......
T Consensus       122 ~p~~~~~d~-~------im~~~-~y~~~krRr~~R---------t~y~p~~tgyfd~~~~P~Y~~~~~~~~d  176 (225)
T KOG3308|consen  122 KPQVDLFDR-I------IMLTL-DYETCKRRREAR---------TYYPPDDTGYFDPVVWPHYEKNFEEARD  176 (225)
T ss_pred             chhhhhhhh-h------eeeec-cHHHHHHhhccc---------ccCCCCCCccccCccchHHHHHHHHHHh
Confidence            556666665 3      44444 666666555322         3443333355677789998888776654

>PRK08233 hypothetical protein; Provisional

Probab=99.37  E-value=3.6e-12  Score=116.45  Aligned_cols=146  Identities=16%  Similarity=0.205  Sum_probs=89.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH--HHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE--GQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~--er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      +++||+|+|++||||||+|+.|...|.    .+.++++|+|+.+..  +....         +......+.++++.+.+.
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~----~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   68 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK----NSKALYFDRYDFDNCPEDICKW---------IDKGANYSEWVLTPLIKD   68 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC----CCceEEECCEEcccCchhhhhh---------hhccCChhhhhhHHHHHH
Confidence            468999999999999999999998873    346789999986532  11111         111112256677777666


Q ss_pred             HHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhh
Q 044604          308 LTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAY  387 (476)
Q Consensus       308 L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy  387 (476)
                      |..+.    ++                             ...++||+||.+...                  ++.+.+.
T Consensus        69 l~~~~----~~-----------------------------~~~~~vivd~~~~~~------------------~~~~~~~   97 (182)
T PRK08233         69 IQELI----AK-----------------------------SNVDYIIVDYPFAYL------------------NSEMRQF   97 (182)
T ss_pred             HHHHH----cC-----------------------------CCceEEEEeeehhhc------------------cHHHHHH
Confidence            65552    11                             012788999876643                  2345566


Q ss_pred             hhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhh
Q 044604          388 FDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPT  450 (476)
Q Consensus       388 ~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~  450 (476)
                      +|+ .+|||+       +++..++|+++|...-   ....--.+....|..+.+|.|.....+
T Consensus        98 ~d~-~i~l~~-------~~~~~~~R~~~R~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~~~  149 (182)
T PRK08233         98 IDV-TIFIDT-------PLDIAMARRILRDFKE---DTGNEIHNDLKHYLNYARPLYLEALHT  149 (182)
T ss_pred             cCE-EEEEcC-------CHHHHHHHHHHHHhhh---ccccchhhHHHHHHHHHHHHHHHHhhc
Confidence            665 555555       6788888888876421   001111234567777777776655444

>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]

Probab=99.34  E-value=9.3e-12  Score=119.68  Aligned_cols=189  Identities=23%  Similarity=0.363  Sum_probs=136.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHH-HHHHcccCCccccccCCCCCccHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQA-KLREANRGNALLEFRGNAGSHDLQLSVETLT  309 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~-~la~~~p~npLl~~rG~P~t~D~~lL~e~L~  309 (476)
                      .||+|.|+||+|.||+..+..++|++..++++-|..|.|+. ++.+.. +++++......+.+.| |++.|+..|.+++.
T Consensus         6 PiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFg-peANdf~~LE~~f~   84 (289)
T COG3954           6 PVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFG-PEANDFGLLEQTFI   84 (289)
T ss_pred             ceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecC-ccccchHHHHHHHH
Confidence            48999999999999999999999999999999999999995 444322 2222222223366666 99999999999999


Q ss_pred             HhhhhhcCC--c-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604          310 AISKLTKEG--T-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA  386 (476)
Q Consensus       310 ~Lk~~~k~G--~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d  386 (476)
                      +..   +.|  + .-.+..||....-++ ++..-..|+....|.||+..||++-+.....             +  ++..
T Consensus        85 eYg---~~G~Gr~R~YlHt~dEAvp~nq-~PGTFTpW~~lpe~sDvLFYEGLHGgvVt~~-------------~--nvAq  145 (289)
T COG3954          85 EYG---QSGKGRSRKYLHTYDEAVPWNQ-VPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQ-------------H--NVAQ  145 (289)
T ss_pred             Hhc---ccCCcchhhhhhchhhcCccCC-CCCCCCCcccCCCccceeeeeccccceecCc-------------c--cHhh
Confidence            886   344  2 244566776543332 2333446999988999999999998853221             2  2555


Q ss_pred             hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604          387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      ..|+       +|.+   -+-+-++|-.+-   .|+++.+|.|.|.|.+-+-|-||.|-.|+.+.++
T Consensus       146 HvDl-------liGv---VPivNLEWIQK~---~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFS  199 (289)
T COG3954         146 HVDL-------LVGV---VPIVNLEWIQKL---IRDTSERGHSREAVMDSVVRSMDDYINYITPQFS  199 (289)
T ss_pred             hhce-------eeee---eeEeeHHHHHHH---HhcccccCccHHHHHHHHHHhhhhHHhhcCcccc
Confidence            5555       4433   234556776432   3566789999999999999999999999988774

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.59  E-value=3.2e-07  Score=80.64  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=28.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ||.|+|++||||||+|+.|...+     ....++.|+.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~~i   33 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTGGI   33 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-----CCceeccccC
Confidence            68999999999999999999887     3456888854

>PRK06762 hypothetical protein; Provisional

Probab=98.55  E-value=4.5e-07  Score=82.63  Aligned_cols=38  Identities=32%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.+|+|+|++||||||+|+.|+..+   |..+.+++.|.+.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r   39 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR   39 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence            6799999999999999999999887   4467788877665

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.43  E-value=6.6e-08  Score=90.22  Aligned_cols=108  Identities=22%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-----HHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-----EGQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-----~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      +|||+|+.||||||+++.|.. +     .+.+|++|.+....     ....++....+. ..+   ...+..|...|.+.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~-~~~---~~~g~idr~~L~~~   70 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKIAHEVYEPGGPALQAIVEAFGP-DIL---LEDGELDRKKLGEI   70 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHHHHhhhhcccHHHHHHHHHcCc-cee---CCCCcCCHHHHHHH
Confidence            599999999999999999987 3     35679999987532     112222222110 011   12367888766665


Q ss_pred             H-HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccc
Q 044604          308 L-TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLG  361 (476)
Q Consensus       308 L-~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll  361 (476)
                      + ..-.. ++.-+.+..|.+......    ..     ... ....++|+|+-.++
T Consensus        71 vf~~~~~-~~~l~~i~hp~i~~~~~~----~~-----~~~-~~~~~vive~plL~  114 (179)
T cd02022          71 VFADPEK-RKKLEAITHPLIRKEIEE----QL-----AEA-RKEKVVVLDIPLLF  114 (179)
T ss_pred             HhCCHHH-HHHHHHHHHHHHHHHHHH----HH-----HHc-cCCCEEEEEehHhh
Confidence            4 21100 012235566765443210    01     011 12368999977765

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.39  E-value=4.2e-07  Score=98.71  Aligned_cols=85  Identities=15%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .++.+|+|+|++||||||+|+.|+..|     ....+++|+||+....... . .          |.+ .-|...+...+
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~YR~~a~~~l-~-~----------~~~-~~~~~~l~~l~  343 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAMYRAVTWLVL-Q-E----------GID-PQDEEALAELL  343 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCceehHHHHHHH-H-c----------CcC-CcCHHHHHHHH
Confidence            367899999999999999999999998     3688999999986543221 1 1          111 11233334444


Q ss_pred             HHhhhhh----cCCceEEeeccccccc
Q 044604          309 TAISKLT----KEGTKMKLPRYDKSAY  331 (476)
Q Consensus       309 ~~Lk~~~----k~G~~v~iP~YD~s~~  331 (476)
                      ..++-..    ..|..|.+|.||...+
T Consensus       344 ~~l~~~~~~~~~~~~~i~~~~~dv~~~  370 (512)
T PRK13477        344 SDLKIELKPSSGSPQRVWINGEDVTEA  370 (512)
T ss_pred             hcCCeeeccCCCCCceEEeCCcchHhh
Confidence            4443211    1335688999987654

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.37  E-value=3e-06  Score=76.69  Aligned_cols=36  Identities=36%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|+|+|++||||||+|+.|+..|     ...+++.|+++.
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~l-----g~~~~~~~~~~~   36 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKL-----SLKLISAGDIFR   36 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc-----CCceecHHHHHH
Confidence            379999999999999999998877     345788887664

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.32  E-value=4.2e-07  Score=78.01  Aligned_cols=34  Identities=41%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ||+|+|++||||||+|+.|++.+     ...+|++|+|+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL-----GFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH-----CCeEEEecceE
Confidence            69999999999999999999988     46789999954

...

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.11  E-value=4.5e-06  Score=79.96  Aligned_cols=52  Identities=31%  Similarity=0.353  Sum_probs=42.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH-HHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE-GQAKLRE  282 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~-er~~la~  282 (476)
                      |.||.+.||+|+||||++..|+..+...|.+|.+|++|.|.-..- +++.+++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~   53 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAE   53 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHH
Confidence            789999999999999999999999987799999999999987543 4444444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR00017 cmk cytidylate kinase

Probab=98.11  E-value=8.7e-06  Score=79.17  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +++|+|.|++||||||+++.|+..|     ....+..|++|..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~-----~~~~~~~g~~~r~   39 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKL-----GYAYLDSGAMYRA   39 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-----CCceeeCchHHHH
Confidence            4789999999999999999999887     3456788888853

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.08  E-value=3e-06  Score=80.42  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +++|||+|+.||||||+++.|.. +     .+.+|..|.+.+
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~   37 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAIAH   37 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHHHH
Confidence            46899999999999999999887 4     357899999864

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.06  E-value=8.2e-06  Score=84.43  Aligned_cols=56  Identities=21%  Similarity=0.130  Sum_probs=45.9

Q ss_pred             eHHHHHHHHHhhhhcCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          204 TYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       204 PL~~~l~~~v~~~~~~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |+..+|-..+..   +        .++|++|||.|++|||||||+..|...+...|.+|.+|++|.-
T Consensus        40 ~~~~~l~~~~~~---~--------~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~   95 (332)
T PRK09435         40 ALAQELLDALLP---H--------TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS   95 (332)
T ss_pred             HHHHHHHHHHhh---c--------CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence            666666555322   1        2468999999999999999999999999888999999999973

>PRK07261 topology modulation protein; Provisional

Probab=98.04  E-value=2.3e-05  Score=73.06  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=29.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|+|.|++||||||||+.|...+     ....+++|+++.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~-----~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY-----NCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----CCCeEecCCEEe
Confidence            48999999999999999998776     345789999875

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.04  E-value=3.7e-06  Score=80.50  Aligned_cols=67  Identities=25%  Similarity=0.248  Sum_probs=42.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc----ccCH-HHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF----YLTA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF----Yl~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      ++|||+|+.||||||+++.|.. +     .+.+|..|..    |.+. ...+++.+.. ....+   ...|++|...|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~-----g~~vid~D~i~~~~~~~~~~~~~~l~~~f-g~~~~---~~~g~idR~~L~~   71 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-E-----GFLIVDADQVARDIVEPGQPALAELAEAF-GDDIL---NPDGTLDRAGLAA   71 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeCcHHHHHHHhcCCHHHHHHHHHh-Ccccc---CCCChhhHHHHHH
Confidence            4799999999999999999985 2     3578999964    4432 2233333321 11122   2347888877655


Q ss_pred             HH
Q 044604          307 TL  308 (476)
Q Consensus       307 ~L  308 (476)
                      .+
T Consensus        72 ~v   73 (200)
T PRK14734         72 KA   73 (200)
T ss_pred             HH
Confidence            43

>PRK04182 cytidylate kinase; Provisional

Probab=98.03  E-value=1.2e-05  Score=73.23  Aligned_cols=37  Identities=32%  Similarity=0.446  Sum_probs=30.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ++|+|+|.+||||||+|+.|+..|   |  ..++.+|+++..
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~l---g--~~~id~~~~~~~   37 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKL---G--LKHVSAGEIFRE   37 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc---C--CcEecHHHHHHH
Confidence            379999999999999999999887   3  456777777643

>PRK04040 adenylate kinase; Provisional

Probab=98.01  E-value=0.00017  Score=68.55  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      |.+|+|.|.+||||||+++.|...|.   .....++.|+|+..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~~   41 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVMLE   41 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHHH
Confidence            67999999999999999999998884   23567888998754

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.92  E-value=8e-06  Score=77.91  Aligned_cols=36  Identities=19%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|||+|+.||||||+|+.|...+     .+.+|+.|++.+
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~   37 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAR   37 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHH
Confidence            379999999999999999999876     357789998864

>PRK13808 adenylate kinase; Provisional

Probab=97.90  E-value=4.6e-05  Score=79.05  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |.|.|++||||||+|..|...+     .+..|++||.+.
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~y-----gl~~is~gdlLR   36 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQY-----GIVQLSTGDMLR   36 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCceecccHHHH
Confidence            6689999999999999999877     457899999884

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.87  E-value=1.4e-05  Score=75.89  Aligned_cols=154  Identities=22%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----cCH-HHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----LTA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----l~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      ++|||+|+-||||||+++.|+. +     .+.+|..|..-    .+. ....++.+..+. .++.   .-|+.|...|.+
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~-----G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~-~il~---~~g~idR~~L~~   70 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-L-----GFPVIDADEIAHELYEPGSEGYKALKERFGE-EILD---EDGEIDRKKLAE   70 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-T-----T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGG-GGBE---TTSSB-HHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-C-----CCCEECccHHHHHHhhcCHHHHHHHHHHcCc-cccC---CCCCChHHHHHH
Confidence            5899999999999999999887 3     56789999654    343 333344333211 1232   236888887766


Q ss_pred             HH----HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhH
Q 044604          307 TL----TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNK  382 (476)
Q Consensus       307 ~L----~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~  382 (476)
                      .+    ..++.    =+.+-.|.--.....    +     +... ....++++|.=.++-.                   
T Consensus        71 ~vF~d~~~~~~----L~~iihP~I~~~~~~----~-----~~~~-~~~~~~v~e~pLL~E~-------------------  117 (180)
T PF01121_consen   71 IVFSDPEKLKK----LENIIHPLIREEIEK----F-----IKRN-KSEKVVVVEIPLLFES-------------------  117 (180)
T ss_dssp             HHTTSHHHHHH----HHHHHHHHHHHHHHH----H-----HHHC-HSTSEEEEE-TTTTTT-------------------
T ss_pred             HHhcCHHHHHH----HHHHHhHHHHHHHHH----H-----HHhc-cCCCEEEEEcchhhhh-------------------
Confidence            54    11211    123344542221110    0     0011 1127888887665521                   


Q ss_pred             HHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Q 044604          383 NLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYH  445 (476)
Q Consensus       383 ~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye  445 (476)
                      .+       ..++|..|++.+| .    +-|++|-.+   +  +||+.+++.+.+..=+|..+
T Consensus       118 ~~-------~~~~D~vi~V~a~-~----e~ri~Rl~~---R--~~~~~~~~~~ri~~Q~~~~~  163 (180)
T PF01121_consen  118 GL-------EKLCDEVIVVYAP-E----EIRIKRLME---R--DGLSEEEAEARIASQMPDEE  163 (180)
T ss_dssp             TG-------GGGSSEEEEEE---H----HHHHHHHHH---H--HTSTHHHHHHHHHTS--HHH
T ss_pred             hH-------hhhhceEEEEECC-H----HHHHHHHHh---h--CCCcHHHHHHHHHhCCCHHH
Confidence            12       2335666777664 2    333443221   1  38999999888888777643

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.84  E-value=1.2e-05  Score=77.78  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CHHHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TAEGQAKLREANRGNALLEFRGNAGSHDLQLS  304 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~~er~~la~~~p~npLl~~rG~P~t~D~~lL  304 (476)
                      ..|++|||+|+.||||||+++.|+..+   |  +.++..|....    +.....++.+.. +..++.    -+.+|...|
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~l---g--~~vidaD~i~~~l~~~~~~~~~i~~~f-G~~i~~----~g~idR~~L   73 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKL---N--LNVVCADTISREITKKPSVIKKIAEKF-GDEIVM----NKQINRAML   73 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHc---C--CeEEeccHHHHHHHCchHHHHHHHHHh-CHHhcc----CCCcCHHHH
Confidence            458999999999999999999998765   3  45788887753    222223333221 112222    267888777


Q ss_pred             HHHH
Q 044604          305 VETL  308 (476)
Q Consensus       305 ~e~L  308 (476)
                      .+.+
T Consensus        74 ~~~v   77 (204)
T PRK14733         74 RAII   77 (204)
T ss_pred             HHHH
Confidence            6654

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.83  E-value=6.8e-05  Score=75.48  Aligned_cols=46  Identities=33%  Similarity=0.394  Sum_probs=39.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CCeEEEeccccccCHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT-G-RKSATISIDDFYLTAE  275 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-~~v~vISlDDFYl~~~  275 (476)
                      ++.+|+|.||+|+||||++..|...+... | .+|.+|++|.|.....
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~  240 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAV  240 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHH
Confidence            57799999999999999999999888765 5 7999999999875443

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.81  E-value=3.3e-05  Score=73.24  Aligned_cols=40  Identities=25%  Similarity=0.140  Sum_probs=35.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ..+.||+|+|++|||||||++.|..+|...|.+|.+|-.|
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~   43 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   43 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence            3567999999999999999999999998888888888653

>TIGR00152 dephospho-CoA kinase

Probab=97.80  E-value=1.3e-05  Score=75.09  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|||+|+.||||||+++.|....     ...+++.|.+-
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~   34 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIA   34 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHH
Confidence            59999999999999999988764     35689999885

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.79  E-value=2.7e-05  Score=72.69  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=36.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|++|-|+|.+||||||+|+.|...|...|.++.+|-.|.+-
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR   42 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR   42 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence            478999999999999999999999999999999999888664

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.77  E-value=3.2e-05  Score=77.77  Aligned_cols=40  Identities=35%  Similarity=0.480  Sum_probs=33.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+.++|||+|++|+|||||...|...+.+.|.+|.+|..|
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD   66 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD   66 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence            4578999999999999999999999998889999999999

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.75  E-value=3.2e-05  Score=71.34  Aligned_cols=42  Identities=24%  Similarity=0.209  Sum_probs=35.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+|.+|.|.|++||||||+|+.|...|...+..+.++..|++
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~   46 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL   46 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence            467899999999999999999999999766666777766654

>PRK06217 hypothetical protein; Validated

Probab=97.74  E-value=2.5e-05  Score=72.93  Aligned_cols=36  Identities=28%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .|.|.|.+||||||+|+.|++.|     ....+++|+++..
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l-----~~~~~~~D~~~~~   38 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL-----DIPHLDTDDYFWL   38 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCcEEEcCceeec
Confidence            48999999999999999999887     3568999999963

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.74  E-value=5.3e-05  Score=80.95  Aligned_cols=48  Identities=31%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG  276 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e  276 (476)
                      .+|.+|+++|++||||||++..|+..+...|.+|.+|++|-|--...+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~e  145 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFD  145 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHH
Confidence            468999999999999999999999999888999999999988754333

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.00021  Score=67.70  Aligned_cols=37  Identities=32%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .+|.|+|++||||||+|+.|+..+   |.+  ++|.-.++..
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~---gl~--~vsaG~iFR~   37 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHL---GLK--LVSAGTIFRE   37 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHh---CCc--eeeccHHHHH
Confidence            379999999999999999999998   444  5666666643

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.71  E-value=5.3e-05  Score=69.83  Aligned_cols=41  Identities=29%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ++.+|+|.|.+||||||+|+.|...|...|.++.+|..|.+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            35699999999999999999999999877778888888866

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.71  E-value=5.4e-05  Score=71.70  Aligned_cols=44  Identities=23%  Similarity=0.171  Sum_probs=37.7

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..+|.+|+|.|.+||||||+++.|...|...|..+..|..|++.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~   64 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR   64 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence            35689999999999999999999999887667777888777765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.70  E-value=5.1e-05  Score=60.68  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE----eccccccCHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI----SIDDFYLTAE  275 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI----SlDDFYl~~~  275 (476)
                      +|+|+|++||||||+++.|+..|  .+.++.++    -+|+++....
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~~~I~eg~~~~~~   45 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDEIVILEGLYASYK   45 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeEEEEecchhhhhh
Confidence            58999999999999999999998  34455444    3455554433

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.68  E-value=8e-05  Score=74.87  Aligned_cols=46  Identities=26%  Similarity=0.182  Sum_probs=40.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      .+|.+|++.|++|+||||++..|+..+...|.+|.+|.+|-|....
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a  115 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAA  115 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHH
Confidence            4678999999999999999999999998889999999999876543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.67  E-value=5.3e-05  Score=77.55  Aligned_cols=40  Identities=33%  Similarity=0.422  Sum_probs=37.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ..+.+|||.|.+|+|||||...|-..|...|.+|.+|..|
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD   88 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD   88 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence            5678999999999999999999999998899999999999

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.66  E-value=2.4e-05  Score=74.96  Aligned_cols=66  Identities=24%  Similarity=0.258  Sum_probs=40.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CH-HHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TA-EGQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      +|||+|+.||||||+++.|...      .+.+++.|..-+    +. ...+++.+.. +..++.   .-|+.|...|.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~------g~~~i~~D~i~~~~~~~~~~~~~~i~~~f-G~~i~~---~~g~idr~~L~~~   70 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEEL------GAFGISADRLAKRYTEPDSPILSELVSLL-GPSILD---ENGKPNRKKISEI   70 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHHC------CCEEEecchHHHHHHhcCcHHHHHHHHHh-ChhhcC---CCCccCHHHHHHH
Confidence            5899999999999999988642      367788897742    22 2233333221 111221   2367888776665


Q ss_pred             H
Q 044604          308 L  308 (476)
Q Consensus       308 L  308 (476)
                      +
T Consensus        71 v   71 (196)
T PRK14732         71 V   71 (196)
T ss_pred             H
Confidence            4

>PRK14528 adenylate kinase; Provisional

Probab=97.64  E-value=0.00032  Score=66.15  Aligned_cols=35  Identities=34%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++||||||+|+.|+..+     .+..|++|+...
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~-----~~~~is~~~~lr   37 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL-----SIPQISTGDILR   37 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCCeeeCCHHHH
Confidence            47899999999999999998877     356788888873

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.64  E-value=0.00018  Score=80.41  Aligned_cols=42  Identities=17%  Similarity=0.108  Sum_probs=34.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      ++..+|.|.||+||||||+|+.|.+.|+     ...+.+|.||+.-.
T Consensus       440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~-----~~~~~~~~~~~~~~  481 (661)
T PRK11860        440 DRVPVICIDGPTASGKGTVAARVAEALG-----YHYLDSGALYRLTA  481 (661)
T ss_pred             cCcceEEeeCCCCCCHHHHHHHHHHHhC-----CeEecHHHhhhHHH
Confidence            3355899999999999999999999983     34699999997643

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.60  E-value=9e-05  Score=68.96  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=36.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++.+|+|.|.+||||||+++.|...+...|..+..+..|++-
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r   58 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR   58 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence            4678999999999999999999999997767777778777653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.60  E-value=3.9e-05  Score=67.38  Aligned_cols=35  Identities=34%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ||-++|++||||||+|+.|...+     ...+|+.|.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~~~~   35 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDEIRR   35 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHHHHH
Confidence            57899999999999999998776     378899999653

...

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.60  E-value=0.00019  Score=65.22  Aligned_cols=35  Identities=29%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      |+|.|++||||||+|+.|...+     ....|+.|+|+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~   35 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPA   35 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccCh
Confidence            5689999999999999999887     3577899999753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.60  E-value=9.4e-05  Score=67.94  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=36.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ++|++.|++|+||||++..+...+.+.|.++.++..|.|..
T Consensus         1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~   41 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP   41 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence            47899999999999999999999888888999999997653

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.59  E-value=0.0001  Score=75.89  Aligned_cols=45  Identities=24%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .+|.+|++.|++||||||++..|+..+...|.+|.++..|-|-..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~  156 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAA  156 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchh
Confidence            467899999999999999999999999888889999999987543

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.59  E-value=9.4e-05  Score=78.03  Aligned_cols=67  Identities=27%  Similarity=0.320  Sum_probs=43.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC----H-HHHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT----A-EGQAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~----~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      ++|||+|+.||||||+++.|+. +     .+.+|..|..-..    . ....++.+.. +..++.   .-|++|...|.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~-----G~~vidaD~i~~~l~~~~~~~~~~i~~~f-G~~il~---~~G~idr~~L~~   71 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-L-----GAVVVDADVLAREVVEPGTEGLAALVAAF-GDDILL---ADGALDRPALAA   71 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEehHHHHHHHhcCChHHHHHHHHHh-ChHhcC---CCCcCCHHHHHH
Confidence            4699999999999999999986 3     4678999977532    2 2223332221 112222   236899887766


Q ss_pred             HH
Q 044604          307 TL  308 (476)
Q Consensus       307 ~L  308 (476)
                      .+
T Consensus        72 ~v   73 (395)
T PRK03333         72 KA   73 (395)
T ss_pred             HH
Confidence            54

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.57  E-value=6.8e-05  Score=77.96  Aligned_cols=42  Identities=31%  Similarity=0.326  Sum_probs=37.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEeccccccCH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDFYLTA  274 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDFYl~~  274 (476)
                      ++.+.|.+||||||+++.|...|. ..|.+|.++++|||+...
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~   43 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEA   43 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccccc
Confidence            356899999999999999998887 579999999999999643

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.56  E-value=0.00012  Score=74.24  Aligned_cols=43  Identities=33%  Similarity=0.353  Sum_probs=39.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++.+|||.|++|||||||+..|...+...|.+|.+|..|..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~   74 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS   74 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4578999999999999999999999998889999999999766

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.55  E-value=0.00038  Score=66.13  Aligned_cols=27  Identities=26%  Similarity=0.053  Sum_probs=23.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+|.+|.|+|||||||||+++.|...+
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            357899999999999999999886653

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.53  E-value=0.00012  Score=66.72  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEE-Eecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSAT-ISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~v-ISlD  268 (476)
                      +|+|+|+++||||||++.|...|...|.++.+ .++|
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~   38 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD   38 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence            79999999999999999999999888998874 4544

>PRK10867 signal recognition particle protein; Provisional

Probab=97.51  E-value=0.00014  Score=77.86  Aligned_cols=54  Identities=30%  Similarity=0.235  Sum_probs=43.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccCH-HHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLTA-EGQAKLRE  282 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~~-~er~~la~  282 (476)
                      .+|.+|.++|++||||||++..|+..|... |.+|.+|+.|-|--.. +++..+++
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~  153 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGE  153 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHh
Confidence            468999999999999999999999988877 8999999999865332 23444443

>PRK08118 topology modulation protein; Reviewed

Probab=97.51  E-value=7.5e-05  Score=69.54  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      -|.|.|++||||||+|+.|...+     .+.++++|+.+.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l-----~~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL-----NIPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCCceecchhhc
Confidence            48899999999999999999988     456789998764

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.50  E-value=0.0001  Score=69.17  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=33.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      +.|+||+|.++||||||...|...|++.|.+|.+|-
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK   37 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK   37 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence            469999999999999999999999999999999984

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.49  E-value=0.00015  Score=69.65  Aligned_cols=42  Identities=26%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+|++|=++|.|||||||+|.+|...|.+.|..+.++-.|.-
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv   62 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV   62 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence            568999999999999999999999999999999988877754

>PRK14974 cell division protein FtsY; Provisional

Probab=97.48  E-value=0.00019  Score=74.57  Aligned_cols=46  Identities=28%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      .+|.+|++.|++|+||||++..|...|...|.+|.++..|-|-...
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a  183 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGA  183 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHH
Confidence            4689999999999999999999999998888899999999885544

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.47  E-value=9e-05  Score=68.66  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .+|.++|++||||||+|+.|+..+.   .....+..|+|+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D~~~~~   41 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLA---EPWLHFGVDSFIEA   41 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhC---CCccccCccHHHHh
Confidence            3799999999999999999998873   23456789999854

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.47  E-value=0.00022  Score=69.08  Aligned_cols=50  Identities=24%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             CCc-EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHH
Q 044604          229 LPW-WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAK  279 (476)
Q Consensus       229 ~~P-~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~  279 (476)
                      .+| +.|+|.||+|||||||...+.+.|+.. .++++|.-|=++...+++-.
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~   60 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLR   60 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHH
Confidence            456 899999999999999998888888654 79999999999876665543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.47  E-value=0.0017  Score=73.38  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=33.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      +|+|+|++||||||+|+.|+..|.     ...+.+..+|...+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~-----~~~~~~g~~~r~~~   40 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLG-----YAYLDTGAMYRACA   40 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcEeecCcEeHHHH
Confidence            799999999999999999999983     46789999997654

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.47  E-value=0.00011  Score=65.85  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +|.|+|++||||||+|+.|...+     ....++.|.|...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~   36 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPP   36 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccH
Confidence            57899999999999999999886     3577899999864

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.47  E-value=0.00016  Score=76.98  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=53.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcccCCccccccCCCC--CccHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNAG--SHDLQLSV  305 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P~--t~D~~lL~  305 (476)
                      .+|.+|+|.|+.||||||++..|+..|...|.+|.++++|-|-... +++...++..         |.|-  ..|-..+.
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l---------gipv~v~~d~~~L~  309 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI---------GFEVIAVRDEAAMT  309 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc---------CCcEEecCCHHHHH
Confidence            3478999999999999999999999888778999999999986432 3333333221         2221  34556666


Q ss_pred             HHHHHhh
Q 044604          306 ETLTAIS  312 (476)
Q Consensus       306 e~L~~Lk  312 (476)
                      +.|..++
T Consensus       310 ~aL~~lk  316 (436)
T PRK11889        310 RALTYFK  316 (436)
T ss_pred             HHHHHHH
Confidence            7776663

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.00023  Score=75.98  Aligned_cols=124  Identities=25%  Similarity=0.275  Sum_probs=77.7

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcccCCccccccCCCCCccH-HHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNAGSHDL-QLSV  305 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P~t~D~-~lL~  305 (476)
                      .++|.||-.+|-|||||||+|..|+..|+..|.+|.+++.|=|-... ++++.+++.... |   +.+.....|. +...
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v-~---~f~~~~~~~Pv~Iak  172 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV-P---FFGSGTEKDPVEIAK  172 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC-c---eecCCCCCCHHHHHH
Confidence            46799999999999999999999999999999999999999876543 456667766422 2   2233223333 3456


Q ss_pred             HHHHHhhhhhcCCceEEeeccccccccCCCCCCCCC--------CCceecCCCcEEEEcccccccCCCc
Q 044604          306 ETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPS--------TWPEIEGPLTVVLYEGWMLGFKPLP  366 (476)
Q Consensus       306 e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~--------~w~~V~~P~DVVIVEG~~ll~~p~~  366 (476)
                      +.|+..+.   ++  ..+=..|-.     | |..-.        .-..+..|..+++|=--+.++.+..
T Consensus       173 ~al~~ak~---~~--~DvvIvDTA-----G-Rl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~  230 (451)
T COG0541         173 AALEKAKE---EG--YDVVIVDTA-----G-RLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN  230 (451)
T ss_pred             HHHHHHHH---cC--CCEEEEeCC-----C-cccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence            66777652   22  112223321     1 22111        0112236777777777777776543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.45  E-value=0.00016  Score=66.27  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+|.|.|+.||||||+++.|+..|...|.++..+.-.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~   37 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP   37 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3799999999999999999999998888888776543

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.00098  Score=70.74  Aligned_cols=75  Identities=19%  Similarity=0.137  Sum_probs=54.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcccCCccccccCCC--CCccHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNA--GSHDLQLSV  305 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P--~t~D~~lL~  305 (476)
                      .++.+|+|.|++||||||++..|...+...|.+|.+|++|.|--.. +++...++..         |+|  ...|...+.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l---------gvpv~~~~dp~dL~  274 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL---------DVELIVATSPAELE  274 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC---------CCCEEecCCHHHHH
Confidence            4577999999999999999999998887778999999999986543 3444444321         222  245667777


Q ss_pred             HHHHHhh
Q 044604          306 ETLTAIS  312 (476)
Q Consensus       306 e~L~~Lk  312 (476)
                      +.|..++
T Consensus       275 ~al~~l~  281 (407)
T PRK12726        275 EAVQYMT  281 (407)
T ss_pred             HHHHHHH
Confidence            7777663

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.43  E-value=0.00018  Score=77.07  Aligned_cols=54  Identities=30%  Similarity=0.295  Sum_probs=43.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC-HHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT-AEGQAKLRE  282 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~-~~er~~la~  282 (476)
                      .+|.+|.++|++|+||||++..|+..|.+.|.+|.+|+.|.|--. .+++..++.
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~  147 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAE  147 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999888999999999987432 233444443

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.42  E-value=0.00017  Score=66.61  Aligned_cols=36  Identities=33%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ||+|+|++|||||||+..|...|+..|.+|.+|-.|
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~   36 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD   36 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            689999999999999999999998889999999766

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.41  E-value=0.00017  Score=73.84  Aligned_cols=39  Identities=26%  Similarity=0.336  Sum_probs=33.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.|++|.|+|++||||||+|..|+..|   |.. .+|++|.|-
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r  128 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIR  128 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence            469999999999999999999999888   344 578999886

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.39  E-value=0.00027  Score=65.83  Aligned_cols=38  Identities=37%  Similarity=0.376  Sum_probs=34.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+|+|+|++|||||||+..|...|...|.+|.+|-.|.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~   39 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH   39 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence            48999999999999999999999988899998887654

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR00959 ffh signal recognition particle protein

Probab=97.39  E-value=0.00024  Score=75.98  Aligned_cols=44  Identities=30%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDFYl  272 (476)
                      .+|.+|.++|++||||||+|..|+..|. +.|.+|.+|++|-|-.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~  141 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP  141 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence            4689999999999999999999998876 4689999999998543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.39  E-value=0.00014  Score=67.05  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=30.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ||.|.|++||||||+|+.|+..+     .+..|++||...
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d~lr   35 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGDLLR   35 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECChHHH
Confidence            58899999999999999999877     468899998875

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.38  E-value=0.00018  Score=65.62  Aligned_cols=39  Identities=28%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ||.|.|.+||||||+|+.|...+...|.++..+..|.+-
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r   39 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR   39 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence            578999999999999999999997667777777666543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.38  E-value=0.00013  Score=62.31  Aligned_cols=22  Identities=45%  Similarity=0.542  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      |+|+|.+||||||+|+.|+..+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7999999999999999999987

...

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.37  E-value=0.0002  Score=68.79  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=29.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..|++|||+|+.||||||+++.|..+      .+.++..|..
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~~------g~~v~d~D~i   38 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAEM------GCELFEADRV   38 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHC------CCeEEeccHH
Confidence            45799999999999999999998863      4567888844

>PRK03839 putative kinase; Provisional

Probab=97.36  E-value=0.00018  Score=66.57  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++||||||+++.|++.+     ....+++|+++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d~~~~   36 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLTEFAL   36 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehhhhhh
Confidence            58899999999999999999988     356799998863

>PRK13768 GTPase; Provisional

Probab=97.35  E-value=0.00028  Score=69.91  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=35.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +++|.|.|+.||||||++..+...+...|.+|.+|.+|
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D   39 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD   39 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence            57899999999999999999999998889999999888

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.35  E-value=0.00016  Score=65.17  Aligned_cols=37  Identities=22%  Similarity=0.107  Sum_probs=31.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+.+|.|.|++||||||+|+.|+..|     ....+..|++.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d~~~   39 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTDHLI   39 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEChHHH
Confidence            35689999999999999999999998     35677888775

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.34  E-value=0.00019  Score=70.24  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=33.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|-++|.+||||||+|+.|+..|...|.++.+++.|.+
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l   38 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI   38 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            47799999999999999999999877888888877764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.33  E-value=0.00015  Score=66.66  Aligned_cols=36  Identities=19%  Similarity=0.108  Sum_probs=29.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|+|.|++||||||+|+.|...+     ....+++|++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~-----g~~~~~~g~~~~   39 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY-----GFTHLSTGDLLR   39 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHH
Confidence            478999999999999999999876     346788887653

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PLN02200 adenylate kinase family protein

Probab=97.32  E-value=0.00024  Score=69.81  Aligned_cols=40  Identities=18%  Similarity=0.033  Sum_probs=34.1

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+.|++|.|.|++||||||+|+.|+..+     .+..|+++|...
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~-----g~~his~gdllR   79 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETF-----GFKHLSAGDLLR   79 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh-----CCeEEEccHHHH
Confidence            4578999999999999999999998877     356788888874

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.31  E-value=0.00016  Score=71.39  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=27.1

Q ss_pred             EeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          236 FSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       236 IaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      |.||.||||||+++.+++.+...|.++.+|.+|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            689999999999999999999889999999999

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.31  E-value=0.0067  Score=59.78  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=34.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..+++|...|-+|.|||++|+.|.+.|+-.|.++.+++.-+|
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~y   51 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDY   51 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccc
Confidence            567999999999999999999999999977999999987765

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PLN02422 dephospho-CoA kinase

Probab=97.30  E-value=0.0002  Score=70.87  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CHH-HHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TAE-GQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~~-er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      +|||+|+.||||||+++.|+. +     .+.+|+.|+..+    +.. ...++.+.. +...+   ...|+.|-..|.+.
T Consensus         3 ~igltG~igsGKstv~~~l~~-~-----g~~~idaD~~~~~l~~~g~~~~~~l~~~F-G~~il---~~dG~idR~~L~~~   72 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFKS-S-----GIPVVDADKVARDVLKKGSGGWKRVVAAF-GEDIL---LPDGEVDREKLGQI   72 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-C-----CCeEEehhHHHHHHHHhhHHHHHHHHHHh-CHHhc---CCCCcCCHHHHHHH
Confidence            799999999999999999883 2     457899998753    222 123333221 11122   23478898877665


Q ss_pred             H
Q 044604          308 L  308 (476)
Q Consensus       308 L  308 (476)
                      +
T Consensus        73 V   73 (232)
T PLN02422         73 V   73 (232)
T ss_pred             H
Confidence            4

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.30  E-value=0.00017  Score=68.44  Aligned_cols=37  Identities=30%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      .|.|.|++||||||+|+.|.+.+     ...-|++||++...
T Consensus         2 riiilG~pGaGK~T~A~~La~~~-----~i~hlstgd~~r~~   38 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL-----GLPHLDTGDILRAA   38 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-----CCcEEcHhHHhHhh
Confidence            37799999999999999999886     46678888988754

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.28  E-value=0.00031  Score=64.30  Aligned_cols=36  Identities=39%  Similarity=0.577  Sum_probs=33.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|++.|+.||||||++..+...+.+.|.++.++.+|
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D   36 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID   36 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence            489999999999999999999998889999999999

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.27  E-value=0.00028  Score=66.93  Aligned_cols=43  Identities=30%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...|.+|-|+|++||||||++..+...+.  +..+++|..|+|-.
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~   54 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ   54 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence            36799999999999999999998877764  45788999999864

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.26  E-value=0.00045  Score=66.22  Aligned_cols=42  Identities=33%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      |+.|||.|+.|||||||.+.+...+.. ..++.++..|-++..
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~   42 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQE   42 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChh
Confidence            689999999999999999998888764 345777776665543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.26  E-value=0.00025  Score=59.08  Aligned_cols=42  Identities=33%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ..|.|.|++|+||||+++.|...+...+..+..+..+.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~   44 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE   44 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence            478999999999999999999888654435777777766543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.25  E-value=0.00029  Score=72.28  Aligned_cols=38  Identities=32%  Similarity=0.333  Sum_probs=32.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--ccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl  272 (476)
                      .+.+|.|+||+||||||+|..|+..+     .+.+|+.|+  +|+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds~Qvy~   42 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRL-----NGEIISADSMQVYR   42 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccccceee
Confidence            45799999999999999999998876     467899999  664

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.22  E-value=0.00041  Score=72.27  Aligned_cols=37  Identities=27%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      +|++|+|+|.+|||||||+..|...|+.. .+|.+|-.
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~   40 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH   40 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence            68999999999999999999999999877 88888854

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.21  E-value=0.00053  Score=72.56  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=39.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHH----cCCCeEEEeccccccCHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV----TGRKSATISIDDFYLTAEG  276 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~----~G~~v~vISlDDFYl~~~e  276 (476)
                      ..|.+|.+.|++|+||||++..|+..+..    .|.+|.+|++|.|-....+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e  223 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK  223 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH
Confidence            35789999999999999999999988763    3679999999998654433

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.19  E-value=0.0005  Score=69.47  Aligned_cols=36  Identities=25%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|+|.+|||||||+..|...|++.| +|.+|-.|.
T Consensus         3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~   38 (274)
T PRK14493          3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD   38 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence            799999999999999999999999989 899997775

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.0018  Score=61.33  Aligned_cols=53  Identities=25%  Similarity=0.143  Sum_probs=40.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGN  287 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~n  287 (476)
                      .-+.+|-|.|.+||||||.+++|...|+     ..-+-.|||+-+.. +++..+..|.|
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~-----~~F~dgDd~Hp~~N-veKM~~GipLn   62 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELG-----LKFIDGDDLHPPAN-VEKMTQGIPLN   62 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhC-----CcccccccCCCHHH-HHHHhcCCCCC
Confidence            4567999999999999999999999883     56789999986644 44444444433

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.13  E-value=0.0014  Score=69.66  Aligned_cols=73  Identities=25%  Similarity=0.283  Sum_probs=55.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccccccCHHHHHH-HHHcccCCccccccCCC--CCccHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFYLTAEGQAK-LREANRGNALLEFRGNA--GSHDLQLSV  305 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDDFYl~~~er~~-la~~~p~npLl~~rG~P--~t~D~~lL~  305 (476)
                      ..||.+.||.|+||||+...|+..+.  ....+|.+|++|.|--...+|-+ .++      +|   |.|  -.++..-|.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~------im---~vp~~vv~~~~el~  273 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD------IM---GVPLEVVYSPKELA  273 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHH------Hh---CCceEEecCHHHHH
Confidence            56999999999999999999998887  33569999999999987765544 332      22   333  356677777


Q ss_pred             HHHHHhh
Q 044604          306 ETLTAIS  312 (476)
Q Consensus       306 e~L~~Lk  312 (476)
                      +.+..++
T Consensus       274 ~ai~~l~  280 (407)
T COG1419         274 EAIEALR  280 (407)
T ss_pred             HHHHHhh
Confidence            7777773

>PRK12338 hypothetical protein; Provisional

Probab=97.11  E-value=0.00046  Score=71.30  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|.+|.|+|++||||||+|+.|+..+   |.  ..+..+|+.
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l---~~--~~~~~tD~~   39 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTL---NI--KHLIETDFI   39 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHC---CC--eEEccChHH
Confidence            58999999999999999999999887   32  345445554

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.11  E-value=0.00063  Score=59.58  Aligned_cols=39  Identities=33%  Similarity=0.431  Sum_probs=33.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++.|.|++|+||||++..+...+...|.++..++.+.-.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~   39 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI   39 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence            478999999999999999988887777788888887654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.11  E-value=0.00086  Score=62.42  Aligned_cols=38  Identities=26%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ..+|.|.|+.||||||+++.|+..|...|.++.++...
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~   40 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP   40 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            36899999999999999999999998888887666544

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK01184 hypothetical protein; Provisional

Probab=97.11  E-value=0.00038  Score=64.54  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=26.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|+|+|++||||||+++.    ++..|  +.++++||...
T Consensus         2 ~~i~l~G~~GsGKsT~a~~----~~~~g--~~~i~~~d~lr   36 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSKI----AREMG--IPVVVMGDVIR   36 (184)
T ss_pred             cEEEEECCCCCCHHHHHHH----HHHcC--CcEEEhhHHHH
Confidence            4899999999999999873    33334  55688887653

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.11  E-value=0.00062  Score=72.88  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH-HHcCCCeEEEeccccccC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLF-RVTGRKSATISIDDFYLT  273 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL-~~~G~~v~vISlDDFYl~  273 (476)
                      .++.+|+|.|++||||||++..|+..+ ...|.+|.++++|-|--.
T Consensus       221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a  266 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA  266 (432)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence            357899999999999999999998755 445888999999986543

>PRK14527 adenylate kinase; Provisional

Probab=97.10  E-value=0.00036  Score=65.53  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=32.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .|.+|.|.|++||||||+|+.|+..+     .+..+++|+....
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~-----~~~~is~gd~~r~   43 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL-----GLKKLSTGDILRD   43 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-----CCCCCCccHHHHH
Confidence            56799999999999999999998877     3567888887743

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.10  E-value=0.00073  Score=63.53  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      -+|+|.|++||||||+++.|..++.     ...|..|+++...
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~-----~~~i~gd~~~~~~   41 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFS-----AKFIDGDDLHPAK   41 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC-----CEEECCcccCCHh
Confidence            3789999999999999999999873     3578888886543

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.10  E-value=0.00043  Score=67.03  Aligned_cols=36  Identities=31%  Similarity=0.349  Sum_probs=31.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .++|||+|+.||||||+|+.++. +     .+.+|++|++-+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~-----G~~vidaD~v~r   37 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-L-----GFPVIDADDVAR   37 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-c-----CCeEEEccHHHH
Confidence            47999999999999999999887 4     457899998875

>PLN02840 tRNA dimethylallyltransferase

Probab=97.10  E-value=0.0011  Score=70.85  Aligned_cols=67  Identities=19%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc--c---------CHHHHHHHHHcccCCccccccCCCC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY--L---------TAEGQAKLREANRGNALLEFRGNAG  297 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY--l---------~~~er~~la~~~p~npLl~~rG~P~  297 (476)
                      ....+|.|+||+||||||||..|+..+.     ..+|+.|.+.  .         +.+++..    -| |-|++..++-+
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~-----~~iis~Ds~qvYr~~~IgTaKpt~eE~~~----V~-Hhlidil~p~e   88 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLN-----GEIISADSVQVYRGLDVGSAKPSLSERKE----VP-HHLIDILHPSD   88 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCC-----CCeEeccccceecceeEEcCCCCHHHHcC----CC-eEeEeecCCCC
Confidence            3456899999999999999999998873     4689999853  2         1223221    22 23666667777


Q ss_pred             CccHHHHH
Q 044604          298 SHDLQLSV  305 (476)
Q Consensus       298 t~D~~lL~  305 (476)
                      .|....+.
T Consensus        89 ~ySv~~F~   96 (421)
T PLN02840         89 DYSVGAFF   96 (421)
T ss_pred             ceeHHHHH
Confidence            88876553

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.08  E-value=0.00077  Score=53.95  Aligned_cols=34  Identities=32%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      +|.+.|..|+||||++..|...|.+.|.++.++.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            4788999999999999999999988888776554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.08  E-value=0.00087  Score=62.50  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      ..+|.|.|+.||||||+++.|.+.|...|..+.+.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~   37 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT   37 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence            46899999999999999999999998777555443

>PRK14530 adenylate kinase; Provisional

Probab=97.06  E-value=0.00055  Score=65.57  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .|.|.|++||||||+|+.|+..+     .+..|++|++...
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~-----~~~~i~~g~~lr~   40 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEF-----GVEHVTTGDALRA   40 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCeEEeccHHHHH
Confidence            58899999999999999999887     3567888888753

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00051  Score=67.54  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .++|+|.||+||||||+|+.|+..|+     ..-+.+=-+|+.
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg-----~~yldTGamYRa   41 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLG-----FHYLDTGAMYRA   41 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhC-----CCeecccHHHHH
Confidence            48999999999999999999999983     234555566643

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.02  E-value=0.00087  Score=69.93  Aligned_cols=40  Identities=25%  Similarity=0.146  Sum_probs=36.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.+|+|+|.+|||||||...|...|++.|.+|.+|-.|.
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~  243 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH  243 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence            4679999999999999999999999999999999997664

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.02  E-value=0.0028  Score=69.77  Aligned_cols=47  Identities=28%  Similarity=0.281  Sum_probs=38.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQ  277 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er  277 (476)
                      .-+|+|.|++|+||||++..|...+...  |.+|.+|++|.|.....++
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQ  398 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQ  398 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHH
Confidence            4689999999999999999998877554  4689999999987654433

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.02  E-value=0.0006  Score=63.05  Aligned_cols=34  Identities=32%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |.|.|++||||||+|+.|+..+     .+..|++|+...
T Consensus         2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~~l~~   35 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTGDLLR   35 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-----CCeEEECcHHHH
Confidence            7899999999999999999886     467899999874

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.02  E-value=0.0011  Score=71.90  Aligned_cols=46  Identities=24%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTAE  275 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~~  275 (476)
                      ++.||++.|++|+||||++..|...+. ..| .+|.+|.+|.|...-.
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~  302 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH  302 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH
Confidence            457999999999999999999998874 345 4899999998765543

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.99  E-value=0.00075  Score=66.43  Aligned_cols=40  Identities=20%  Similarity=0.080  Sum_probs=34.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +.|+-|.|.|++||||||+|+.|+..+     .+..|++|+.+..
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~gdllr~   43 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMGNILRE   43 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECChHHHH
Confidence            346679999999999999999999887     4788999999853

>PRK08356 hypothetical protein; Provisional

Probab=96.98  E-value=0.0009  Score=63.26  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=28.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ..+|+|+|++||||||+|+.|+.    +|.  .+|++.+.++
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~----~g~--~~is~~~~~~   40 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE----KGF--CRVSCSDPLI   40 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH----CCC--cEEeCCCccc
Confidence            46899999999999999999952    344  3677777654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.98  E-value=0.00088  Score=71.52  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDDFY  271 (476)
                      ..+|++.||+|+||||++..|...+.  ..|.+|.+|++|.|-
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            34899999999999999999988776  347899999999974

>PRK00023 cmk cytidylate kinase; Provisional

Probab=96.96  E-value=0.00061  Score=66.50  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      +.+|+|+|++||||||+|+.|+..|     ....++.|++|..-
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~-----~~~~~~~~~~~r~~   42 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKL-----GFHYLDTGAMYRAV   42 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCchhHHHH
Confidence            5799999999999999999999887     35678999999753

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.96  E-value=0.00074  Score=60.04  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.|.|++||||||+|+.|+..|     ....++.|.+.
T Consensus         2 i~l~G~~GsGKstla~~la~~l-----~~~~~~~d~~~   34 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL-----GLPFVDLDELI   34 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh-----CCCEEEchHHH
Confidence            7899999999999999999888     34578888775

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.93  E-value=0.00071  Score=67.38  Aligned_cols=37  Identities=24%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.+|-+.|++||||||+|+.|+..+.    ....|+.|++.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r   38 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLR   38 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHH
Confidence            46788999999999999999988772    46788998873

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=96.92  E-value=0.00057  Score=64.85  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .||-+.|+|.|||||+|+.|+..|.   ..-..+++|+|..
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~---~p~~~l~~D~f~~   39 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLP---EPWLHLSVDTFVD   39 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSS---S-EEEEEHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCc---CCeEEEecChHHh
Confidence            3899999999999999999999984   2447899999985

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK14531 adenylate kinase; Provisional

Probab=96.92  E-value=0.00089  Score=62.66  Aligned_cols=37  Identities=27%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ..|.|.|++||||||+|+.|+..+     .+..|+++|....
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~-----g~~~is~gd~lr~   39 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH-----GLRHLSTGDLLRS   39 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-----CCCeEecccHHHH
Confidence            358899999999999999999887     3567999888753

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.92  E-value=0.0017  Score=68.59  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=37.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTAEG  276 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~~e  276 (476)
                      +.-+|++.||+|+||||++..|...+. ..| .+|.+|++|.|-....+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~E  184 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHE  184 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHH
Confidence            346899999999999999999987754 446 58999999998665443

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=96.90  E-value=0.0013  Score=65.06  Aligned_cols=35  Identities=29%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      .+|+|+|.+||||||++..|...|+..|.+|.+|-
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK   36 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK   36 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence            48999999999999999999999998899999984

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=96.90  E-value=0.0011  Score=71.16  Aligned_cols=36  Identities=22%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ||+|+|.+|||||||+..|...|+..|.+|.+|-.|
T Consensus         3 Vi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~   38 (452)
T PRK14495          3 VYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS   38 (452)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            899999999999999999999999999999999654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.89  E-value=0.001  Score=65.84  Aligned_cols=51  Identities=29%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREA  283 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~  283 (476)
                      +|+|.||||||||||-..|..+.+.-+-.+.+-..|-..++..++..++.+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~   83 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK   83 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence            899999999999999999988876532233333344455666666665544

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.89  E-value=0.0016  Score=57.52  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      |++.|..|+||||++..|...|.+.|.+|.+|.+|-
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            789999999999999999999988899999999998

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.88  E-value=0.0035  Score=63.40  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH-HHHHHHHcccCCccccccCCC--CCccHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE-GQAKLREANRGNALLEFRGNA--GSHDLQLSVE  306 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~-er~~la~~~p~npLl~~rG~P--~t~D~~lL~e  306 (476)
                      ++.+|++.|++|+||||++..|...+...|.++.++++|.|..... ++...++.      +   |+|  ...|.+.+.+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~------~---~~~~~~~~~~~~l~~  144 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT------I---GFEVIAVRDEAAMTR  144 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh------c---CceEEecCCHHHHHH
Confidence            3468999999999999999999988876688999999998874332 22332221      1   222  3456677777


Q ss_pred             HHHHhh
Q 044604          307 TLTAIS  312 (476)
Q Consensus       307 ~L~~Lk  312 (476)
                      .|..++
T Consensus       145 ~l~~l~  150 (270)
T PRK06731        145 ALTYFK  150 (270)
T ss_pred             HHHHHH
Confidence            777774

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.86  E-value=0.00087  Score=61.79  Aligned_cols=24  Identities=29%  Similarity=0.257  Sum_probs=22.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|.|.|++||||||+++.|...+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            789999999999999999988874

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.83  E-value=0.0018  Score=54.82  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ..|.|.|++|+||||+++.+...+...+..+..+..+.++.
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~   60 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE   60 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence            36779999999999999999988865566676676666554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.82  E-value=0.001  Score=66.53  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=35.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ||-..|.||+||||||.+....+.|++.|+++.+|.+|
T Consensus         2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLD   39 (290)
T KOG1533|consen    2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLD   39 (290)
T ss_pred             CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecC
Confidence            45567899999999999999999999999999999999

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.79  E-value=0.0014  Score=63.17  Aligned_cols=37  Identities=16%  Similarity=-0.012  Sum_probs=28.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .|.+|.|+|.+||||||+|+.|+..+   |.. .+++.|-+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~---~~~-~~~~~D~~   38 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHR---AID-IVLSGDYL   38 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc---CCe-EEehhHHH
Confidence            46799999999999999999998886   332 34555533

>PRK14532 adenylate kinase; Provisional

Probab=96.79  E-value=0.0012  Score=61.43  Aligned_cols=35  Identities=23%  Similarity=0.133  Sum_probs=30.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      |.|.|++||||||+|+.|+..+     .+..|++||....
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d~lr~   37 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEER-----GMVQLSTGDMLRA   37 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcHHHHH
Confidence            6789999999999999998776     4678999988753

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.78  E-value=0.00097  Score=62.66  Aligned_cols=25  Identities=40%  Similarity=0.311  Sum_probs=22.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ..+|+|.|++|||||||++.|...+
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998876

>TIGR01351 adk adenylate kinases

Probab=96.78  E-value=0.00097  Score=63.65  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |.|.|++||||||+|+.|+..+     .+..|+++|.+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~gdllr   35 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTGDLLR   35 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-----CCCeeehhHHHH
Confidence            6789999999999999998876     467899988874

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PLN02748 tRNA dimethylallyltransferase

Probab=96.78  E-value=0.0029  Score=68.55  Aligned_cols=67  Identities=21%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--cccC---------HHHHHHHHHcccCCccccccCCCC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYLT---------AEGQAKLREANRGNALLEFRGNAG  297 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl~---------~~er~~la~~~p~npLl~~rG~P~  297 (476)
                      ..+.+|.|.||+||||||||..|+..+     .+.+|+.|.  .|..         .+++.    .- .|=|++..+.-+
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgLdIgTaKpt~eE~~----~V-pHHLid~v~p~e   89 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGLDVLTNKVPLHEQK----GV-PHHLLGVISPSV   89 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCcchhcCCCCHHHHc----CC-CCeeEeecCCCC
Confidence            456689999999999999999998887     478999996  7742         22222    12 233677767667


Q ss_pred             CccHHHHH
Q 044604          298 SHDLQLSV  305 (476)
Q Consensus       298 t~D~~lL~  305 (476)
                      .|+...+.
T Consensus        90 ~ysv~~F~   97 (468)
T PLN02748         90 EFTAKDFR   97 (468)
T ss_pred             cCcHHHHH
Confidence            88886554

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.0082  Score=63.76  Aligned_cols=80  Identities=25%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHH-HHHHHcccCCccccccCCCCCcc-HHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQ-AKLREANRGNALLEFRGNAGSHD-LQLSVE  306 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er-~~la~~~p~npLl~~rG~P~t~D-~~lL~e  306 (476)
                      .+|-||-+.|-+||||||+|..|+..+++.|.++.+|+-|-|--..-+| ++.+... .-|.+   |.-.-.| ...+.+
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~-~iP~y---gsyte~dpv~ia~e  174 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA-RVPFY---GSYTEADPVKIASE  174 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh-CCeeE---ecccccchHHHHHH
Confidence            5788999999999999999999999999999999999999998766544 3333332 11332   2111122 235566


Q ss_pred             HHHHhh
Q 044604          307 TLTAIS  312 (476)
Q Consensus       307 ~L~~Lk  312 (476)
                      -++..|
T Consensus       175 gv~~fK  180 (483)
T KOG0780|consen  175 GVDRFK  180 (483)
T ss_pred             HHHHHH
Confidence            677775

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.76  E-value=0.0011  Score=65.30  Aligned_cols=35  Identities=26%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      +|-++|.+||||||+|+.|+++|++.+..+..++-
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k   37 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK   37 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence            45599999999999999999999998888877766

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.74  E-value=0.0014  Score=66.01  Aligned_cols=39  Identities=28%  Similarity=0.233  Sum_probs=29.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|-|+|-+||||||+|+.|+..|...+..|.+++-|++.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~   41 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG   41 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            466999999999999999999999888899999866665

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=96.70  E-value=0.0013  Score=75.95  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=35.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      ..++|+|+|++||||||+|+.|+..|.     ...|.+++||+.-+
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~-----~~~~~~g~~yRa~a   73 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLG-----AQCLNTGSFYRAFT   73 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC-----CcEEeHHHHHHHHH
Confidence            346999999999999999999999983     46799999997544

>PRK02496 adk adenylate kinase; Provisional

Probab=96.68  E-value=0.0017  Score=60.27  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++||||||+|+.|+..+     ++..+++|+...
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~-----~~~~i~~~~~~~   37 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL-----HIPHISTGDILR   37 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEEhHHHHH
Confidence            47889999999999999999887     356788888763

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=96.67  E-value=0.0019  Score=64.33  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=43.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----cCHH-HHHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----LTAE-GQAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----l~~~-er~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      ++|||+|+.||||||+++.|...+     ...+|..|-.-    .+.. ..+++.+..+ +.++.   ..|..|...|.+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~~~~~~i~~~Fg-~~i~~---~dg~idR~~L~~   72 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNMACTRKIAARWP-LCVHP---ETGELNRAELGK   72 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCChHHHHHHHHHhc-hhhcC---CCCcCCHHHHHH
Confidence            589999999999999999998764     35678888664    3332 2333333221 11221   136788887766


Q ss_pred             HH
Q 044604          307 TL  308 (476)
Q Consensus       307 ~L  308 (476)
                      .+
T Consensus        73 ~V   74 (244)
T PTZ00451         73 II   74 (244)
T ss_pred             HH
Confidence            43

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.66  E-value=0.0028  Score=60.19  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSA  263 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~  263 (476)
                      +.+.-|+|+|++|+||||++..|...|+..|.+|.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg   37 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG   37 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence            34678999999999999999999999988776554

>PLN02165 adenylate isopentenyltransferase

Probab=96.66  E-value=0.0016  Score=67.82  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...+|+|.||+||||||||..|+..++     ..+|+.|..
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs~   77 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDKM   77 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCChh
Confidence            344899999999999999999998873     468899876

>PLN02924 thymidylate kinase

Probab=96.65  E-value=0.0032  Score=61.54  Aligned_cols=39  Identities=15%  Similarity=0.012  Sum_probs=33.6

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      ++...+|.|.|.-||||||+++.|++.|...|..|..+.
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~   51 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR   51 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence            355679999999999999999999999998888875553

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.64  E-value=0.0014  Score=65.47  Aligned_cols=25  Identities=36%  Similarity=0.413  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ++||.|+||||||||++.|..+.+.
T Consensus        35 ~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          35 TLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             EEEEEcCCCCCHHHHHHHHhcccCC
Confidence            7999999999999999999988764

>PRK06761 hypothetical protein; Provisional

Probab=96.63  E-value=0.0022  Score=65.30  Aligned_cols=34  Identities=24%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .+|.|.|++||||||+++.|...|...|..+.++
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~   37 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY   37 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence            4799999999999999999999997667766653

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.62  E-value=0.0022  Score=61.44  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++||||||+|+.|+..+     .+..|+++|...
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~dl~r   36 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHISTGDMLR   36 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEECCccHH
Confidence            47899999999999999999887     468899988764

>PRK07933 thymidylate kinase; Validated

Probab=96.62  E-value=0.0026  Score=61.54  Aligned_cols=36  Identities=33%  Similarity=0.461  Sum_probs=32.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|.|.|.-||||||+++.|+..|+..|.+|.++.--
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P   37 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP   37 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            799999999999999999999999889888777543

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.61  E-value=0.0077  Score=56.88  Aligned_cols=40  Identities=23%  Similarity=0.260  Sum_probs=34.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +--++-|.|++||||||||..+.......|.+|+-|++++
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3468999999999999999888776656688899999988

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01394 radB RadB

Probab=96.61  E-value=0.0032  Score=59.91  Aligned_cols=42  Identities=26%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +..++.|.|++||||||||..+...+...|.+|..+++|.-+
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~   59 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS   59 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence            456899999999999999998887776668889889887544

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK13949 shikimate kinase; Provisional

Probab=96.59  E-value=0.0015  Score=60.90  Aligned_cols=34  Identities=35%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -|.|.|+.||||||+++.|+..+     ....+.+|.+.
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D~~i   36 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLDFFI   36 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCCeecccHHH
Confidence            38899999999999999999988     35678899765

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=96.59  E-value=0.003  Score=70.23  Aligned_cols=39  Identities=33%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ...||+|+|.+|||||||...|...|++.|.+|.+|-.|
T Consensus         9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~   47 (597)
T PRK14491          9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA   47 (597)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence            356999999999999999999999999999999999654

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.59  E-value=0.011  Score=67.70  Aligned_cols=73  Identities=23%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCH-HHHHHHHHcccCCccccccCCCC--CccHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTA-EGQAKLREANRGNALLEFRGNAG--SHDLQLS  304 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~-~er~~la~~~p~npLl~~rG~P~--t~D~~lL  304 (476)
                      ++.||++.|++|+||||++..|...+. ..| .+|.+++.|.|-... ++++..++..         |.|-  ..|.+.+
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~---------gvpv~~~~~~~~l  254 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL---------GVPVHAVKDAADL  254 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC---------CCCccccCCHHHH
Confidence            357999999999999999999998774 445 488999999876443 3344443321         2222  3466667


Q ss_pred             HHHHHHh
Q 044604          305 VETLTAI  311 (476)
Q Consensus       305 ~e~L~~L  311 (476)
                      .+.|..+
T Consensus       255 ~~al~~~  261 (767)
T PRK14723        255 RFALAAL  261 (767)
T ss_pred             HHHHHHh
Confidence            7777766

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.55  E-value=0.0024  Score=54.65  Aligned_cols=34  Identities=38%  Similarity=0.433  Sum_probs=25.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |-|.|++|+||||+++.+...+   |..+..+....+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~   34 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSEL   34 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhc---cccccccccccc
Confidence            5689999999999999999987   334444444443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.55  E-value=0.003  Score=69.92  Aligned_cols=42  Identities=26%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDDF  270 (476)
                      +++.+|.|.|.+||||||+|+.|+..|.. .|..+..+..|..
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v  432 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV  432 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence            56789999999999999999999999976 5667788877755

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.54  E-value=0.0028  Score=70.56  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|.+|.+.|.+||||||+|+.|...|...|..+..|..|++..
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~  501 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH  501 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence            45899999999999999999999999987788889999999764

>PRK13947 shikimate kinase; Provisional

Probab=96.54  E-value=0.0024  Score=58.24  Aligned_cols=33  Identities=24%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.|.|++||||||+|+.|+..|.     ...+..|.+.
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg-----~~~id~d~~~   36 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLS-----FGFIDTDKEI   36 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC-----CCEEECchhh
Confidence            78999999999999999999983     3467888753

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.54  E-value=0.0039  Score=59.49  Aligned_cols=41  Identities=29%  Similarity=0.183  Sum_probs=32.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..+.+|++.|..|||||||...+...+.. +.++.++..|-+
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~   60 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVI   60 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCC
Confidence            46899999999999999999887766542 457888887754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.54  E-value=0.0043  Score=67.67  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=43.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHHHHHHHHcccCCcccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEGQAKLREANRGNALLEFR  293 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~er~~la~~~p~npLl~~r  293 (476)
                      .|||.|++|||||||++.|..++... |                  ..+..+.+|.|..+..-++.+.           .
T Consensus       371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~-----------~  439 (582)
T PRK11176        371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA-----------Y  439 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh-----------c
Confidence            69999999999999999999888542 2                  1234556666665544333221           1


Q ss_pred             CCCCCccHHHHHHHHHH
Q 044604          294 GNAGSHDLQLSVETLTA  310 (476)
Q Consensus       294 G~P~t~D~~lL~e~L~~  310 (476)
                      |.|+.+|-+.+.+.++.
T Consensus       440 ~~~~~~~~~~i~~al~~  456 (582)
T PRK11176        440 ARTEQYSREQIEEAARM  456 (582)
T ss_pred             CCCCCCCHHHHHHHHHH
Confidence            44555666666666554

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=96.53  E-value=0.0034  Score=61.26  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=34.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|+|--|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus         3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp   39 (270)
T cd02040           3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP   39 (270)
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            6888899999999999999999998999999998883

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>TIGR01287 nifH nitrogenase iron protein

Probab=96.52  E-value=0.0034  Score=62.04  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|.|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D   37 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCD   37 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999999999999999999999999999888

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.50  E-value=0.0028  Score=59.12  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..|.|.|++||||||+++.|...+     ....+.+|..
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~~   38 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQE   38 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCch
Confidence            358999999999999999999887     3557888874

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.48  E-value=0.0016  Score=59.83  Aligned_cols=24  Identities=42%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+|+|.|++||||||+++.|...+
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            379999999999999999998765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.48  E-value=0.0017  Score=60.75  Aligned_cols=24  Identities=33%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+|+|.|++||||||+++.|...+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999997765

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=96.48  E-value=0.0044  Score=59.15  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|.|--|+||||++..|+..|.+.|.+|.+|=+|
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D   37 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD   37 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            689999999999999999999999999999999888

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.007  Score=62.44  Aligned_cols=79  Identities=25%  Similarity=0.251  Sum_probs=55.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----------cC-HHHHHHHHHcccCCccccccCCCCC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----------LT-AEGQAKLREANRGNALLEFRGNAGS  298 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----------l~-~~er~~la~~~p~npLl~~rG~P~t  298 (476)
                      .|.+|.|.||+|||||-+|-.|+..+     ...+||.|..-          +| .++++    ..| |-|++.+++-++
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~-----~~eIIs~DSmQvYr~mdIGTAKps~~e~~----~vp-HhliDi~~p~e~   71 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRL-----GGEIISLDSMQVYRGLDIGTAKPSLEELA----GVP-HHLIDIRDPTES   71 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHc-----CCcEEecchhhhcCCCcccCCCCCHHHHc----CCC-EEEecccCcccc
Confidence            46789999999999999999999888     46899999765          22 23332    223 347888888889


Q ss_pred             ccHHHHHHHH-HHhhhhhcCC
Q 044604          299 HDLQLSVETL-TAISKLTKEG  318 (476)
Q Consensus       299 ~D~~lL~e~L-~~Lk~~~k~G  318 (476)
                      |+...+.+.. ..+...+.+|
T Consensus        72 ysa~~f~~~a~~~i~~i~~rg   92 (308)
T COG0324          72 YSAAEFQRDALAAIDDILARG   92 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHhCC
Confidence            9987655443 3343322445

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.45  E-value=0.0028  Score=66.56  Aligned_cols=54  Identities=22%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEec--------cccc--cCHHHHHHHHHc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISI--------DDFY--LTAEGQAKLREA  283 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISl--------DDFY--l~~~er~~la~~  283 (476)
                      .+..+++|+||+||||||||+.|+..|+..     |+ ...+.-        |++.  .|.+.|..+.++
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~-~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~  144 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGR-RYTFKWNGEESPMHEDPLHLFPDELREDLEDE  144 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCc-eEEEEecCCCCCCccCCcccCCHHHHHHHHHH
Confidence            346789999999999999999999999763     22 233333        3333  366677766554

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.45  E-value=0.0042  Score=56.99  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ++.|.|++|+|||||+..+.....+.|.+|..++++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~   37 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE   37 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            3679999999999999776655545688898888764

A related protein is found in archaea.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.44  E-value=0.0022  Score=65.38  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--cccC---------HHHHHHHHHcccCCccccccCCCCCccH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYLT---------AEGQAKLREANRGNALLEFRGNAGSHDL  301 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl~---------~~er~~la~~~p~npLl~~rG~P~t~D~  301 (476)
                      +|.|+||+|||||+||..|...+     ...+||.|+  +|+.         .+++..    -| |-|++..+..+.|+.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~-----~~~iis~Ds~qvY~~l~IgTakp~~~e~~~----v~-hhlid~~~~~~~~~v   70 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKL-----NAEIISVDSMQIYKGMDIGTAKPSLQEREG----IP-HHLIDILDPSESYSA   70 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC-----CCcEEEechhheeeeccccCCCCCHHHHcC----cc-EEEEEEechhheEcH
Confidence            58999999999999999998776     457899998  6642         122221    12 235666666777877


Q ss_pred             HHHHH
Q 044604          302 QLSVE  306 (476)
Q Consensus       302 ~lL~e  306 (476)
                      ..+.+
T Consensus        71 ~~f~~   75 (287)
T TIGR00174        71 ADFQT   75 (287)
T ss_pred             HHHHH
Confidence            54443

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.42  E-value=0.0026  Score=57.97  Aligned_cols=21  Identities=38%  Similarity=0.281  Sum_probs=17.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~l  254 (476)
                      |+|+|+.|+|||||++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            889999999999999999877

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.0031  Score=63.68  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+.|+||.|.|+||+||||+|..|+..|   |++ .+|++|..
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rL---gI~-~visTD~I  124 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRL---GIR-SVISTDSI  124 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHc---CCc-eeecchHH
Confidence            3679999999999999999999999888   555 57888854

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.40  E-value=0.0043  Score=64.54  Aligned_cols=57  Identities=25%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHcc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREAN  284 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~~  284 (476)
                      .++|+||.+.|-.|+||||+...|+..|.+.|.+|.+.-.|-|--.. ++++.++++.
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~  193 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL  193 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999998654 3455566553

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=96.40  E-value=0.0044  Score=60.98  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+|+|+|--|+||||+|..|+..|.+.|.+|.+|=+|
T Consensus         1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D   37 (267)
T cd02032           1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD   37 (267)
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            3799999999999999999999999999999999888

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.40  E-value=0.0032  Score=60.37  Aligned_cols=27  Identities=19%  Similarity=0.162  Sum_probs=22.9

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      +..+.+|.|.||+||||||+++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            456788999999999999999888643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.39  E-value=0.0049  Score=58.70  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +|.|+||+||||||+...|...+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            6899999999999999987777754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.39  E-value=0.0023  Score=72.60  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .|||.|.||||||||++.|..++..
T Consensus       501 ~vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         501 KVAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            6999999999999999999988764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.38  E-value=0.0029  Score=60.16  Aligned_cols=25  Identities=36%  Similarity=0.486  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999998874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.37  E-value=0.0021  Score=57.96  Aligned_cols=24  Identities=42%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|+|.||+||||||+++.|.+.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999988763

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK13973 thymidylate kinase; Provisional

Probab=96.34  E-value=0.006  Score=58.71  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      ..+|.|-|..||||||.++.|+..|...|.++..+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            36788999999999999999999999888877655

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=96.31  E-value=0.0068  Score=55.58  Aligned_cols=39  Identities=31%  Similarity=0.291  Sum_probs=33.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.-.++..|+||||+|..|+..|.+.|.+|.+|-+|-..
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~   39 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA   39 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc
Confidence            345678899999999999999999999999999999655

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.31  E-value=0.0073  Score=64.69  Aligned_cols=49  Identities=24%  Similarity=0.237  Sum_probs=38.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CCeEEEeccccccCHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR-VTG-RKSATISIDDFYLTAEGQA  278 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G-~~v~vISlDDFYl~~~er~  278 (476)
                      .+-+|++.|++|+||||+...|...+. ..+ .++.+++.|.|-....++.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL  240 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL  240 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH
Confidence            456999999999999999999987543 223 5788899999887655443

>PRK00625 shikimate kinase; Provisional

Probab=96.29  E-value=0.0034  Score=59.17  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|.|.|..||||||+++.|+..+     ....|.+|+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D~~I   35 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTDDLI   35 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhhHHH
Confidence            48899999999999999999888     35568888764

>smart00072 GuKc Guanylate kinase homologues

Probab=96.29  E-value=0.0081  Score=56.28  Aligned_cols=24  Identities=38%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+|.|.|||||||+|++..|...+
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcC
Confidence            468899999999999999887664

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.29  E-value=0.0034  Score=59.70  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.28  E-value=0.003  Score=60.08  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.28  E-value=0.018  Score=55.15  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...++.|.|++|+||||||..+...+...|.+|+.|++++|
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~   62 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGL   62 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            45699999999999999998888766666889999999854

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=96.27  E-value=0.0068  Score=59.70  Aligned_cols=37  Identities=27%  Similarity=0.338  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .||+|+|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D   39 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD   39 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence            5889999999999999999999999999999999888

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.27  E-value=0.0041  Score=56.89  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=28.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|.|.|.+||||||+++.|+..|.     ...+..|.+.
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg-----~~~~d~D~~~   37 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALG-----YRFVDTDQWL   37 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-----CCEEEccHHH
Confidence            477899999999999999999882     3567888765

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.25  E-value=0.0038  Score=59.06  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999998764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=96.24  E-value=0.0062  Score=60.54  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|+|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus         3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D   38 (279)
T PRK13230          3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD   38 (279)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence            688889999999999999999999999999999777

>PHA00729 NTP-binding motif containing protein

Probab=96.24  E-value=0.0062  Score=60.27  Aligned_cols=26  Identities=27%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ...|.|.|++|+||||||..|...+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999988763

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=96.23  E-value=0.0062  Score=59.91  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|.|--|+||||+|-.|+..|.+.|.+|.+|=+|
T Consensus         2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D   37 (268)
T TIGR01281         2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD   37 (268)
T ss_pred             EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            688999999999999999999998889999999887

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.22  E-value=0.029  Score=55.06  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD  269 (476)
                      -++.|+|++|+|||||+..+...+... |.+|..+|++.
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~   69 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE   69 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence            378899999999999998887666444 88999999876

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.19  E-value=0.0069  Score=54.97  Aligned_cols=42  Identities=26%  Similarity=0.165  Sum_probs=26.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..+.+|-|.|++|+|||||.+.+...+...+.-+..+..+.+
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            456789999999999999999888888765333555666666

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.18  E-value=0.0058  Score=49.05  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +..|.|++||||||+-.+++.+|
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999887

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.17  E-value=0.0065  Score=57.62  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +..|.|.|++|+||||+|+.+...+...+..+..++.+++-
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            44677999999999999999988876666677777766664

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.15  E-value=0.0034  Score=59.35  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999988764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.15  E-value=0.0045  Score=58.72  Aligned_cols=25  Identities=40%  Similarity=0.626  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.15  E-value=0.004  Score=54.96  Aligned_cols=21  Identities=33%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -+++|.|+||||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            589999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13975 thymidylate kinase; Provisional

Probab=96.13  E-value=0.0053  Score=57.16  Aligned_cols=25  Identities=36%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+|.|.|+.||||||+++.|+..|+
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5899999999999999999999985

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.13  E-value=0.0044  Score=59.79  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13946 shikimate kinase; Provisional

Probab=96.13  E-value=0.005  Score=57.75  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +..|.+.|.+||||||+++.|+..|   |  ...+..|.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~L---g--~~~id~D~   43 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATML---G--LPFLDADT   43 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc---C--CCeECcCH
Confidence            4579999999999999999999988   3  34567774

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=96.11  E-value=0.0083  Score=59.43  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|+|--|+||||+|-.|...|.+.|.+|.+|-.|=
T Consensus         3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dp   39 (273)
T PRK13232          3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDP   39 (273)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence            7888899999999999999999999999999998874

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.11  E-value=0.0036  Score=60.29  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          28 EFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3899999999999999999998774

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.11  E-value=0.015  Score=58.20  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=39.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccCH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLTA  274 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~~  274 (476)
                      ..|++|||.|+=||||||+.+.+...|+.. ..+..++..|-+.+..
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~   64 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDG   64 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCC
Confidence            579999999999999999999999999875 4467788888887653

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.10  E-value=0.0033  Score=58.67  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999987764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.10  E-value=0.0047  Score=58.46  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.09  E-value=0.0047  Score=58.81  Aligned_cols=25  Identities=32%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.09  E-value=0.0049  Score=58.36  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.09  E-value=0.0035  Score=59.40  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999988764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=96.09  E-value=0.008  Score=63.82  Aligned_cols=40  Identities=30%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ..+-+|.|.||+.||||||+..|...+-+.|.++.+|..|
T Consensus        71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD  110 (398)
T COG1341          71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD  110 (398)
T ss_pred             cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence            4567899999999999999999999988889999999888

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.08  E-value=0.0036  Score=62.67  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=34.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc--------------CCCeEEEeccccccCHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT--------------GRKSATISIDDFYLTAE  275 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~--------------G~~v~vISlDDFYl~~~  275 (476)
                      +|+|.||||||||||-+.|+.+.+..              +++...+.+++-.+|+.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~   87 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWL   87 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchh
Confidence            89999999999999999999887642              23566778888888875

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.08  E-value=0.0049  Score=58.84  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.08  E-value=0.005  Score=58.16  Aligned_cols=25  Identities=40%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999988764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK08727 hypothetical protein; Validated

Probab=96.08  E-value=0.0072  Score=59.10  Aligned_cols=40  Identities=35%  Similarity=0.420  Sum_probs=34.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++|+|||.|+.++...+.+.|.++..++++++-.
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~   82 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG   82 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence            3889999999999999999888877788888888877653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.08  E-value=0.0053  Score=57.73  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999998774

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.07  E-value=0.0036  Score=61.95  Aligned_cols=36  Identities=31%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -||.|.||||||||||-+.|..+=.   +..-.|..|+-
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~   64 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGE   64 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCE
Confidence            4899999999999999998875532   33445666663

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0051  Score=59.34  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999998764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0053  Score=59.80  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (246)
T PRK14269         29 KITALIGASGCGKSTFLRCFNRMND   53 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            3899999999999999999998763

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.07  E-value=0.0052  Score=59.39  Aligned_cols=25  Identities=32%  Similarity=0.547  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999987764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=96.06  E-value=0.0083  Score=61.41  Aligned_cols=39  Identities=31%  Similarity=0.393  Sum_probs=34.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|-+.|.-|+||||+|.+++-.+.+.|.+|.++|+|--+
T Consensus         3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~   41 (305)
T PF02374_consen    3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH   41 (305)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence            678999999999999999999999899999999999654

...

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.06  E-value=0.0052  Score=57.73  Aligned_cols=25  Identities=40%  Similarity=0.272  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+|+|+|++|||||||.+.|..++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4799999999999999999888775

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13948 shikimate kinase; Provisional

Probab=96.06  E-value=0.0061  Score=58.04  Aligned_cols=38  Identities=18%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|..|.+.|..||||||+++.|+..|.     ...|.+|.+.
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg-----~~~iD~D~~i   45 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALM-----LHFIDTDRYI   45 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC-----CCEEECCHHH
Confidence            4567899999999999999999998873     3567888544

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.06  E-value=0.016  Score=55.44  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=30.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT------GRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~------G~~v~vISlDD  269 (476)
                      .--++.|.|++||||||||..+.......      +.+|..|++++
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            44689999999999999998887543221      25677777776

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.05  E-value=0.0045  Score=68.05  Aligned_cols=26  Identities=35%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|.||||||||++.|..++..
T Consensus       318 E~lglVGeSGsGKSTlar~i~gL~~P  343 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILAGLLPP  343 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            38999999999999999999998865

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.04  E-value=0.01  Score=58.10  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=28.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -+++|.|++|+||||||..+...+...|.++..++.+.
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~   62 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL   62 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            48999999999999998655544434577887777654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.03  E-value=0.0051  Score=58.95  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          27 EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            489999999999999999999887

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK12377 putative replication protein; Provisional

Probab=96.03  E-value=0.0072  Score=60.33  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=33.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -+.|.|++|+|||+||.+|...+...|..|..++..++.
T Consensus       103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~  141 (248)
T PRK12377        103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM  141 (248)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence            577999999999999999999888778888877777654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.02  E-value=0.0041  Score=60.08  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3899999999999999999987764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.02  E-value=0.01  Score=49.82  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             EEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSA-PQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |+|.| ..|+||||+|..|...+.+.|.++.++-+|-.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~   39 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ   39 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            55665 66999999999999999888999999999966

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.01  E-value=0.0047  Score=54.04  Aligned_cols=36  Identities=33%  Similarity=0.394  Sum_probs=26.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -++||.|++|||||||.+.|...+..   ..-.|..|+.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~   47 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGK   47 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTE
T ss_pred             CEEEEEccCCCccccceeeecccccc---cccccccccc
Confidence            38999999999999999988877653   2334444443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.01  E-value=0.0036  Score=59.28  Aligned_cols=25  Identities=40%  Similarity=0.487  Sum_probs=22.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ++||.|++|||||||.+.|..++..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~   51 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPP   51 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCC
Confidence            8999999999999999999987753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.00  E-value=0.0056  Score=59.30  Aligned_cols=25  Identities=36%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.99  E-value=0.0044  Score=59.58  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            38999999999999999999988753

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.98  E-value=0.01  Score=56.97  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|.|.|++|+|||+||+++...+...|..+..++..++.
T Consensus        44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            467999999999999999998876667788878776653

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.98  E-value=0.006  Score=58.47  Aligned_cols=25  Identities=32%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4899999999999999999998764

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=95.98  E-value=0.0065  Score=56.26  Aligned_cols=30  Identities=20%  Similarity=0.201  Sum_probs=24.9

Q ss_pred             eCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          237 SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       237 aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|++||||||+++.|...+.     ...|..|.++
T Consensus         1 ~G~sGsGKSTla~~la~~l~-----~~~~~~d~~~   30 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH-----AAFLDGDFLH   30 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC-----CeEEeCccCC
Confidence            49999999999999998883     4667777775

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0054  Score=62.10  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|.|||||||+++.|..+++.
T Consensus        40 e~~glVGESG~GKSTlgr~i~~L~~p   65 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLILGLEEP   65 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHHcCcCC
Confidence            38999999999999999999998864

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=95.97  E-value=0.011  Score=58.65  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|+|--|+||||+|-.|...|.+.|.+|.+|-+|
T Consensus         3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D   38 (274)
T PRK13235          3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD   38 (274)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            788999999999999999999999999999999776

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=95.97  E-value=0.0072  Score=60.06  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        51 e~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         51 EVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4899999999999999999998874

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.96  E-value=0.0062  Score=58.16  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.96  E-value=0.0093  Score=52.61  Aligned_cols=35  Identities=37%  Similarity=0.442  Sum_probs=27.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |-|.|++|+|||++++.|++.+   +.++..+++....
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~   36 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDT   36 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccc
Confidence            5689999999999999999998   5566666665543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.95  E-value=0.0057  Score=59.53  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         30 AIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

>PHA02518 ParA-like protein; Provisional

Probab=95.95  E-value=0.012  Score=55.02  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=33.2

Q ss_pred             EEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ||+|.+. -|+||||+|..|...|.+.|.+|.+|-+|--.
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~   41 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG   41 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            5677755 45999999999999999999999999999543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.95  E-value=0.026  Score=54.65  Aligned_cols=26  Identities=38%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +..+|.|+||||+||||+++.|....
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            35789999999999999998877665

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.94  E-value=0.004  Score=59.04  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999988764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.94  E-value=0.0042  Score=59.75  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999988764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.93  E-value=0.0045  Score=57.52  Aligned_cols=37  Identities=30%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -++||.|++|||||||.+.|..++..   ..--|..|+..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   63 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGED   63 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence            48999999999999999999877643   23335555543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.93  E-value=0.0047  Score=58.47  Aligned_cols=26  Identities=35%  Similarity=0.330  Sum_probs=23.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p   51 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIP   51 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC
Confidence            48999999999999999999988754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.93  E-value=0.0048  Score=58.31  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.90  E-value=0.01  Score=60.85  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ...++|+|.|++|||||||...+...|... .++++|.-|
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD  140 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGD  140 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCC
Confidence            356899999999999999999888877542 467777665

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.0067  Score=58.77  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.90  E-value=0.0068  Score=58.22  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          34 QVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccC
Confidence            5899999999999999999998875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.89  E-value=0.0061  Score=57.93  Aligned_cols=40  Identities=18%  Similarity=0.022  Sum_probs=28.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -++||.|++|||||||.+.|..++...++..-.|.+|+.-
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~   73 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP   73 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence            4899999999999999999998875111223345556643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.89  E-value=0.0061  Score=62.68  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||++.|..++.
T Consensus        34 e~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         34 EVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3899999999999999999998875

>PRK05642 DNA replication initiation factor; Validated

Probab=95.89  E-value=0.0092  Score=58.46  Aligned_cols=41  Identities=17%  Similarity=0.247  Sum_probs=35.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .+.|.|++|+|||.|+.++...+...|.+|..++.++|...
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~   87 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR   87 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence            46799999999999999998877766889999999998754

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=95.88  E-value=0.013  Score=65.59  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -.|||.|++|||||||++.|..++..
T Consensus       480 e~vaIvG~sGsGKSTLlklL~gl~~p  505 (686)
T TIGR03797       480 EFVAIVGPSGSGKSTLLRLLLGFETP  505 (686)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            37999999999999999999988754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=95.88  E-value=0.0085  Score=65.00  Aligned_cols=39  Identities=26%  Similarity=0.236  Sum_probs=32.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++|.+|.|+|.+||||||+|..|+..+.   . ..+|++|.+-
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg---~-~~ii~tD~iR  291 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLG---I-TRIVSTDAVR  291 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC---C-cEEeehhHHH
Confidence            4699999999999999999999998873   3 3478998764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.88  E-value=0.005  Score=58.65  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09183 transposase/IS protein; Provisional

Probab=95.87  E-value=0.009  Score=59.62  Aligned_cols=35  Identities=37%  Similarity=0.411  Sum_probs=28.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      .|.|.|++|+|||+|+.+|...+...|.+|..++.
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~  138 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA  138 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence            57799999999999999998776666777765543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.87  E-value=0.0063  Score=59.69  Aligned_cols=26  Identities=35%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~p   58 (258)
T PRK11701         33 EVLGIVGESGSGKTTLLNALSARLAP   58 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999988743

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.85  E-value=0.0074  Score=56.98  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999987764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.85  E-value=0.0049  Score=58.73  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.85  E-value=0.0065  Score=54.75  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             EeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          236 FSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       236 IaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |.||+||||||+|+.|+..+     ....|+..+...
T Consensus         1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~~llr   32 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVGDLLR   32 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH-----TSEEEEHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc-----CcceechHHHHH
Confidence            67999999999999999987     467889888774

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.85  E-value=0.012  Score=64.49  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -.+||.|+||||||||++.|...+
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999998877

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.85  E-value=0.0075  Score=56.72  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999988764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.84  E-value=0.0051  Score=59.02  Aligned_cols=26  Identities=35%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~   52 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGLLPV   52 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999988753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK04296 thymidine kinase; Provisional

Probab=95.84  E-value=0.015  Score=55.23  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .++-|.|+.|+||||++..+...+...|.+|.++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            4788999999999999988777776668888887

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.84  E-value=0.0077  Score=58.52  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         30 EVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999987764

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.83  E-value=0.011  Score=57.86  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=32.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+.|.||+|+|||+|+.++...+...|.+|..++.|++
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~   84 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR   84 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence            46799999999999999999887777888888888874

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.82  E-value=0.0055  Score=58.77  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14526 adenylate kinase; Provisional

Probab=95.82  E-value=0.0091  Score=58.04  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |+|.|++||||||+|+.|+..+     ....|++++...
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~-----~~~~is~G~llr   36 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL-----NYYHISTGDLFR   36 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCceeecChHHH
Confidence            6799999999999999998876     345688888764

>PF13245 AAA_19: Part of AAA domain

Probab=95.81  E-value=0.016  Score=47.67  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=24.2

Q ss_pred             EEEEeCCCCCcHHHH-HHHHHHHHHHc---CCCeEEEec
Q 044604          233 YIGFSAPQGCGKTTL-AFALDYLFRVT---GRKSATISI  267 (476)
Q Consensus       233 VIGIaG~sGSGKTTL-A~~L~~lL~~~---G~~v~vISl  267 (476)
                      ++.|.|++||||||+ ++.+..++..+   +.++.+++-
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~   50 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP   50 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            566899999999955 56677776432   446666654

>PLN02674 adenylate kinase

Probab=95.81  E-value=0.0077  Score=60.15  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=32.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +..|.|.|++||||||+|+.|+..+     .+..|+++|....
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~-----~~~his~GdllR~   68 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA   68 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc-----CCcEEchhHHHHH
Confidence            4567799999999999999999887     4678999998853

>PRK13695 putative NTPase; Provisional

Probab=95.80  E-value=0.012  Score=54.43  Aligned_cols=30  Identities=40%  Similarity=0.661  Sum_probs=25.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCe
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKS  262 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v  262 (476)
                      .|+|.|++|||||||++.|...+...|..+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            589999999999999999888776666553

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.80  E-value=0.0088  Score=58.86  Aligned_cols=25  Identities=32%  Similarity=0.699  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc
Confidence            4899999999999999999998764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=95.80  E-value=0.0057  Score=58.19  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            6999999999999999999987764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.80  E-value=0.0078  Score=59.61  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999998875

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.80  E-value=0.0064  Score=58.63  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4899999999999999999998874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PF13173 AAA_14: AAA domain

Probab=95.79  E-value=0.013  Score=51.69  Aligned_cols=40  Identities=30%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .++.|.|+-||||||+++.+...+. ...++..++.|+...
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~   42 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD   42 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH
Confidence            4788999999999999988776653 224667777777654

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=95.78  E-value=0.019  Score=62.28  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -.|+|.|++|||||||.+.|..++..
T Consensus       359 ~~v~IvG~sGsGKSTLl~lL~gl~~~  384 (571)
T TIGR02203       359 ETVALVGRSGSGKSTLVNLIPRFYEP  384 (571)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            37999999999999999999988753

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.78  E-value=0.0068  Score=58.24  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          29 ETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc
Confidence            4899999999999999999998875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=95.78  E-value=0.014  Score=57.89  Aligned_cols=38  Identities=34%  Similarity=0.425  Sum_probs=35.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|.++|..|+||||+|..+...+.+.|.+|.+|++|--
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~   39 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA   39 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence            67789999999999999999999989999999999974

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.77  E-value=0.011  Score=59.47  Aligned_cols=51  Identities=22%  Similarity=0.121  Sum_probs=33.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLRE  282 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~  282 (476)
                      -|.||.||||||||||-+.|..+++...-.+.+...|=--....++.++++
T Consensus        35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~   85 (263)
T COG1127          35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK   85 (263)
T ss_pred             cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence            489999999999999999999888643223333333322234556656553

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.77  E-value=0.0063  Score=57.82  Aligned_cols=25  Identities=36%  Similarity=0.413  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.77  E-value=0.012  Score=60.11  Aligned_cols=37  Identities=32%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .|.|+|++||||||++++|...+......-.++++.|
T Consensus       134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd  170 (299)
T TIGR02782       134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED  170 (299)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence            4669999999999999999888754322233455555

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.77  E-value=0.0088  Score=58.21  Aligned_cols=25  Identities=32%  Similarity=0.547  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        28 QVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            3899999999999999999998774

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.76  E-value=0.0085  Score=57.97  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.75  E-value=0.0089  Score=54.60  Aligned_cols=25  Identities=28%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+|.+.|+.|+|||||++.+...|.
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4899999999999999999998874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK10908 cell division protein FtsE; Provisional

Probab=95.75  E-value=0.0083  Score=57.37  Aligned_cols=25  Identities=24%  Similarity=0.149  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=95.75  E-value=0.025  Score=51.53  Aligned_cols=36  Identities=17%  Similarity=0.077  Sum_probs=30.5

Q ss_pred             cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCC
Q 044604          226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRK  261 (476)
Q Consensus       226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~  261 (476)
                      ..+.+|+|+..-|++|+|||.+++.|++.|=..|.+
T Consensus        48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~   83 (127)
T PF06309_consen   48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK   83 (127)
T ss_pred             CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence            357889999999999999999999999886555543

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.74  E-value=0.0089  Score=56.51  Aligned_cols=25  Identities=36%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.|++|||||||.+.|..++.
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999987764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.74  E-value=0.0083  Score=55.47  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~   54 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLRP   54 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            38999999999999999999987743

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.73  E-value=0.0081  Score=60.23  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         34 KYYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999998764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.73  E-value=0.0081  Score=58.56  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         32 EIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999998764

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.73  E-value=0.014  Score=61.68  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=26.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .|.|+|++||||||+.+.|...+........+++++|
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd  187 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED  187 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            5779999999999999988877754322233455553

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=95.73  E-value=0.0066  Score=66.26  Aligned_cols=48  Identities=27%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREA  283 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~  283 (476)
                      .+||.||||||||||++.|.....   +..-.|-+|+.-+..-+++++++.
T Consensus       364 ~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~lG~h  411 (580)
T COG4618         364 ALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQLGRH  411 (580)
T ss_pred             eEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHhccc
Confidence            799999999999999999887653   334456777666554455555443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.73  E-value=0.0066  Score=58.02  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~G~~~~   60 (224)
T TIGR02324        35 ECVALSGPSGAGKSTLLKSLYANYLP   60 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            38999999999999999999988753

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=95.72  E-value=0.014  Score=57.62  Aligned_cols=39  Identities=18%  Similarity=0.079  Sum_probs=34.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDDF  270 (476)
                      .+|+|+|--|+||||+|..|...|.+ .|.+|.+|=+|-=
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq   42 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPK   42 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcC
Confidence            48889999999999999999999986 5999999977743

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.72  E-value=0.0088  Score=55.46  Aligned_cols=25  Identities=28%  Similarity=0.242  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            4899999999999999999988764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.72  E-value=0.0061  Score=60.12  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGFVPY   53 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999988753

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.72  E-value=0.016  Score=64.91  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .|||.|++|||||||++.|..++..
T Consensus       493 ~iaIvG~sGsGKSTLlklL~gl~~p  517 (694)
T TIGR03375       493 KVAIIGRIGSGKSTLLKLLLGLYQP  517 (694)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            7999999999999999999887753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.72  E-value=0.0067  Score=58.89  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999988764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.72  E-value=0.0063  Score=58.89  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998775

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.72  E-value=0.0084  Score=58.55  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        27 EKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.71  E-value=0.0087  Score=60.35  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=23.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -+++|.||.|||||||-+.|..+|+.
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            48999999999999999999999863

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.71  E-value=0.0077  Score=57.99  Aligned_cols=25  Identities=32%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            4899999999999999999988764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.71  E-value=0.009  Score=54.07  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999988764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=95.71  E-value=0.0084  Score=59.56  Aligned_cols=25  Identities=32%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         34 SIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999988764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.71  E-value=0.0065  Score=59.13  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         30 TITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            4899999999999999999998764

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=95.70  E-value=0.013  Score=54.91  Aligned_cols=38  Identities=29%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHH
Q 044604          238 APQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLR  281 (476)
Q Consensus       238 G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la  281 (476)
                      |.+||||||++..|+..|     .+.-|-.|||+-+.. .++.+
T Consensus         2 GVsG~GKStvg~~lA~~l-----g~~fidGDdlHp~aN-i~KM~   39 (161)
T COG3265           2 GVSGSGKSTVGSALAERL-----GAKFIDGDDLHPPAN-IEKMS   39 (161)
T ss_pred             CCCccCHHHHHHHHHHHc-----CCceecccccCCHHH-HHHHh
Confidence            889999999999999998     367889999986544 44433

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.70  E-value=0.0065  Score=58.83  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998774

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.70  E-value=0.0079  Score=62.02  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||++.|..++.
T Consensus        43 e~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         43 ETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCC
Confidence            3899999999999999999998874

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.69  E-value=0.0067  Score=57.74  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~~   50 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGFIEP   50 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            48999999999999999999988753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd04163 Era Era subfamily

Probab=95.69  E-value=0.0097  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.|++.|++|||||||...|.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~   24 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALV   24 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999998875

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.69  E-value=0.0069  Score=56.37  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~~~   51 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLKP   51 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999887643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.69  E-value=0.0083  Score=58.52  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14242         33 QVTALIGPSGCGKSTFLRCLNRMND   57 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4899999999999999999998753

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.69  E-value=0.0083  Score=55.93  Aligned_cols=35  Identities=34%  Similarity=0.312  Sum_probs=26.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -++||.|++|||||||.+.|..++..   ..--|..|+
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g   61 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDG   61 (182)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC
Confidence            37999999999999999999988753   223344555

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=95.69  E-value=0.02  Score=55.37  Aligned_cols=42  Identities=21%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+.-++.|.|++||||||||..+....-+.|.+|..++++.-
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~   64 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT   64 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            345689999999999999998876543345889999999753

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.68  E-value=0.0088  Score=59.39  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999988774

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=95.68  E-value=0.008  Score=57.53  Aligned_cols=27  Identities=33%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSA  263 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~  263 (476)
                      .|+|+|.+|+||||+|+.|. .|   |.+++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~l---g~~~i   28 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-EL---GYKVI   28 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-Hh---CCcee
Confidence            69999999999999999998 54   55543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=95.68  E-value=0.012  Score=58.29  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=34.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +-+.|.||.||||||+|..+.......|+.+.+|.+|
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLD   40 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLD   40 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecC
Confidence            4567899999999999999999998889999999999

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.68  E-value=0.011  Score=59.22  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|.|+|++||||||+.+.+...+...+.  .+++++|
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~~--~iitiEd  116 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPEK--NIITVED  116 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCCC--eEEEECC
Confidence            7899999999999999877666543233  3445443

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=95.68  E-value=0.015  Score=56.04  Aligned_cols=39  Identities=33%  Similarity=0.339  Sum_probs=34.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|-++|..|+||||++..+...+.+.|.++.+|.+|---
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~   39 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH   39 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence            366899999999999999999999899999999988433

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=95.68  E-value=0.0093  Score=58.63  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=32.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+|+|+|-.|+||||+|..|+..|.+.| +|.+|-+|
T Consensus         3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~D   38 (264)
T PRK13231          3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCD   38 (264)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEc
Confidence            4788889999999999999999998889 99999887

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.67  E-value=0.0078  Score=57.61  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4899999999999999999998874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.67  E-value=0.011  Score=50.91  Aligned_cols=27  Identities=33%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ..++.|.|++|+||||+++.+...+..
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            347889999999999999998888754

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=95.67  E-value=0.02  Score=59.49  Aligned_cols=42  Identities=21%  Similarity=0.236  Sum_probs=38.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ++..+|+|.|-.|+||||++..|...|.+.|.+|.+|-.|=.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~   70 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK   70 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence            467899999999999999999999999988999999999844

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=95.67  E-value=0.0087  Score=61.51  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||++.|..++.
T Consensus        34 e~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         34 EIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCC
Confidence            3899999999999999999998874

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.66  E-value=0.009  Score=58.64  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        39 e~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         39 EVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3899999999999999999998764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.66  E-value=0.0079  Score=57.23  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 ~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          31 EKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4899999999999999999987764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=95.66  E-value=0.023  Score=63.86  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=33.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEGQAK  279 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~er~~  279 (476)
                      .|||.|++|||||||++.|..++... |                  ..+..+.+|.+..+..-++.
T Consensus       502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  567 (708)
T TIGR01193       502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN  567 (708)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence            79999999999999999998887532 2                  13456666766665544433

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=95.66  E-value=0.019  Score=52.07  Aligned_cols=37  Identities=30%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .-.++-.|+||||+|..|...|.+.|.+|.+|-+|-.
T Consensus         3 ~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~   39 (179)
T cd02036           3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG   39 (179)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3356789999999999999999988999999988754

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=95.65  E-value=0.015  Score=55.16  Aligned_cols=41  Identities=27%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      -+|-|.|-|||||||+|-+|.+.|-+.|.-+.++-.|+.-.
T Consensus        32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh   72 (207)
T KOG0635|consen   32 CVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH   72 (207)
T ss_pred             cEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc
Confidence            58999999999999999999999988888777777776543

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=95.65  E-value=0.014  Score=59.73  Aligned_cols=43  Identities=21%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +...+|.+|-+.|-.|||||||+..|...+.+.+-...+|.+|
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD   56 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD   56 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence            3456789999999999999999999999998776667888888

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.64  E-value=0.0085  Score=58.44  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        30 EVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=95.64  E-value=0.018  Score=56.91  Aligned_cols=31  Identities=32%  Similarity=0.339  Sum_probs=25.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTG  259 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G  259 (476)
                      ..+.-|.+.||+|+||||+|+.+...+...|
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            3445677999999999999999999886544

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.64  E-value=0.0078  Score=57.62  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 ~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          30 ETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            3799999999999999999998774

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.64  E-value=0.0084  Score=64.71  Aligned_cols=48  Identities=21%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-CC-----------------CeEEEeccccccCHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-GR-----------------KSATISIDDFYLTAEGQAK  279 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~-----------------~v~vISlDDFYl~~~er~~  279 (476)
                      -.|+|.|++|||||||++.|..++... |.                 .+..+++|.|..+..-++.
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN  427 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN  427 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence            379999999999999999998777542 11                 3456666766665544443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.63  E-value=0.018  Score=57.39  Aligned_cols=39  Identities=10%  Similarity=0.185  Sum_probs=31.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +..++.|+|++|+||||||..+.......|.+|..++++
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            456899999999999999987765444458899999987

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.63  E-value=0.0085  Score=59.38  Aligned_cols=25  Identities=40%  Similarity=0.647  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         28 PVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999988774

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.63  E-value=0.0097  Score=59.32  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         32 SKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3899999999999999999998774

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.63  E-value=0.018  Score=55.24  Aligned_cols=40  Identities=15%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +.-++.|.|++|+|||||+..+....-..|.++..++.+.
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~   58 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE   58 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            3458999999999999999876543323477888888754

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.63  E-value=0.0098  Score=59.03  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999998864

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.62  E-value=0.0071  Score=57.29  Aligned_cols=26  Identities=35%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~p   53 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999887753

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=95.62  E-value=0.0088  Score=58.79  Aligned_cols=26  Identities=35%  Similarity=0.253  Sum_probs=23.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -.+|+|+|+-|+||||||+.|+..|+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhC
Confidence            35899999999999999999999985

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.62  E-value=0.0079  Score=58.03  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=23.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~G~~~~   55 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLERFYDP   55 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence            48999999999999999999988753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.62  E-value=0.0089  Score=57.64  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        27 EIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            389999999999999999998774

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.62  E-value=0.012  Score=57.81  Aligned_cols=25  Identities=28%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         34 KVTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4899999999999999999998765

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.62  E-value=0.018  Score=55.39  Aligned_cols=39  Identities=21%  Similarity=0.154  Sum_probs=32.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD  269 (476)
                      --++.|+|++|+|||||+..+...+... |.+|..+|++.
T Consensus        13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~   52 (242)
T cd00984          13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM   52 (242)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence            3588899999999999998776555444 88999999887

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.62  E-value=0.0092  Score=61.44  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||++.|..++.
T Consensus        42 e~~~IvG~sGsGKSTLl~~l~gl~~   66 (327)
T PRK11308         42 KTLAVVGESGCGKSTLARLLTMIET   66 (327)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCC
Confidence            3899999999999999999988774

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=95.61  E-value=0.0075  Score=59.18  Aligned_cols=25  Identities=32%  Similarity=0.619  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         31 SVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            4899999999999999999998874

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.61  E-value=0.0095  Score=59.64  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        34 e~~~I~G~nGaGKSTLl~~l~G~~~p   59 (282)
T PRK13640         34 SWTALIGHNGSGKSTISKLINGLLLP   59 (282)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            48999999999999999999988743

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=95.61  E-value=0.019  Score=59.62  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|.++|-.|+||||+|.+++..+.+.|.++.+||+|-=+.
T Consensus         3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs   43 (322)
T COG0003           3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS   43 (322)
T ss_pred             EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence            58999999999999999999999988898899999997664

>PLN02459 probable adenylate kinase

Probab=95.60  E-value=0.012  Score=59.45  Aligned_cols=39  Identities=26%  Similarity=0.169  Sum_probs=32.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +|+.|.|.|++||||||+|..|+..+     ....|++.+.+..
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~   66 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLL-----GVPHIATGDLVRE   66 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeCcHHHHH
Confidence            45668889999999999999999887     4678999988753

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.60  E-value=0.017  Score=54.32  Aligned_cols=28  Identities=32%  Similarity=0.348  Sum_probs=23.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCC
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRK  261 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~  261 (476)
                      |.|+|++|+||||+.+.+...|+..|..
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~   29 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLP   29 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence            7899999999999999999998765544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.60  E-value=0.0074  Score=58.20  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~~   51 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFLTP   51 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999887653

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.60  E-value=0.0096  Score=59.19  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         34 SYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999988764

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.59  E-value=0.0074  Score=58.87  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         31 GVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            3899999999999999999998864

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.59  E-value=0.0094  Score=58.88  Aligned_cols=25  Identities=40%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLGLEK   62 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.59  E-value=0.0099  Score=54.95  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999987764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.59  E-value=0.0073  Score=57.22  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.58  E-value=0.0096  Score=56.31  Aligned_cols=20  Identities=25%  Similarity=0.248  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFAL  251 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L  251 (476)
                      -+++|.|++|||||||.+.+
T Consensus        22 ~~~~l~G~nG~GKSTLl~~i   41 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEG   41 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999877

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.58  E-value=0.0086  Score=58.46  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256         31 SVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccc
Confidence            3899999999999999999998864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.58  E-value=0.0094  Score=59.09  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         34 KITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.57  E-value=0.011  Score=57.98  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         32 DVISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998874

>PRK06893 DNA replication initiation factor; Validated

Probab=95.56  E-value=0.017  Score=56.34  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.|.|++|+|||+|+.++...+.+.|.++..+++++
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~   77 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK   77 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence            4779999999999999999988877788888787753

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=95.56  E-value=0.01  Score=58.37  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         31 EMVALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            3899999999999999999998764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.55  E-value=0.0088  Score=55.22  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -+++|.|++|||||||.+.|..++..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~   53 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLWPW   53 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            38999999999999999999887643

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.55  E-value=0.011  Score=57.26  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        27 SLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999998764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.55  E-value=0.01  Score=59.65  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        33 e~v~i~G~nGsGKSTLl~~l~Gl~~p   58 (288)
T PRK13643         33 SYTALIGHTGSGKSTLLQHLNGLLQP   58 (288)
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            38999999999999999999987743

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=95.54  E-value=0.012  Score=57.17  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14240         30 QVTALIGPSGCGKSTFLRTLNRMND   54 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc
Confidence            4899999999999999999987653

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=95.54  E-value=0.018  Score=58.34  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      |+|+|--|+||||+|..|+..|.+.|.+|.+|-+|
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D   37 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD   37 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence            88999999999999999999999999999999887

>CHL00175 minD septum-site determining protein; Validated

Probab=95.54  E-value=0.024  Score=56.28  Aligned_cols=41  Identities=27%  Similarity=0.149  Sum_probs=34.7

Q ss_pred             CcEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...+|+|+ |-.|+||||+|..|...|.+.|.+|.+|-+|--
T Consensus        14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~   55 (281)
T CHL00175         14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG   55 (281)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            44577776 589999999999999999988999999988853

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.54  E-value=0.0071  Score=58.43  Aligned_cols=25  Identities=32%  Similarity=0.169  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~~   56 (237)
T PRK11614         32 EIVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999987764

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.54  E-value=0.011  Score=57.40  Aligned_cols=25  Identities=40%  Similarity=0.561  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.53  E-value=0.0083  Score=60.10  Aligned_cols=26  Identities=19%  Similarity=0.116  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~Gl~~p   63 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNGLIIS   63 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            38999999999999999999988743

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=95.53  E-value=0.01  Score=59.90  Aligned_cols=25  Identities=44%  Similarity=0.595  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998875

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.53  E-value=0.0083  Score=57.77  Aligned_cols=25  Identities=40%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.53  E-value=0.019  Score=60.29  Aligned_cols=26  Identities=23%  Similarity=0.179  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -+|+|+|++||||||+.+.|...+..
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i~~  160 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIRELAE  160 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            38999999999999999998887753

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.53  E-value=0.0095  Score=57.32  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            4899999999999999999998874

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.53  E-value=0.009  Score=58.21  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         31 ELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccc
Confidence            4899999999999999999998764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.53  E-value=0.0094  Score=56.76  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          31 EKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4899999999999999999987754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.53  E-value=0.0074  Score=59.62  Aligned_cols=25  Identities=28%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999998764

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.52  E-value=0.096  Score=56.33  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             EEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          234 IGFS-APQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       234 IGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      |.|+ ..+||||||++..|.+.|++.|.+|..+-.+
T Consensus         6 i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G   41 (451)
T PRK01077          6 LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG   41 (451)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence            3444 5699999999999999999999888877543

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.52  E-value=0.011  Score=57.00  Aligned_cols=25  Identities=32%  Similarity=0.415  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        49 e~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=95.51  E-value=0.02  Score=57.98  Aligned_cols=38  Identities=24%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+|+|.|-.|+||||++..|...|.+.|.+|.+|-+|-
T Consensus         5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~   42 (295)
T PRK13234          5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP   42 (295)
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence            47888899999999999999999999999999998874

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.51  E-value=0.011  Score=56.42  Aligned_cols=25  Identities=32%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999988764

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.51  E-value=0.017  Score=57.75  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             EEEEeCCCCCcHHHHHHH-HHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFA-LDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~-L~~lL~~~G~~v~vISlDD  269 (476)
                      .|+|+|--||||||+|.. +.+++++.|.+|.+|-.|-
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp   39 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP   39 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence            699999999999999988 6667766668888888884

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.51  E-value=0.0099  Score=57.33  Aligned_cols=24  Identities=38%  Similarity=0.769  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|+|.||||||||||-+.++.+..
T Consensus        31 ~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccC
Confidence            699999999999999999988764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.50  E-value=0.0098  Score=54.90  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~~~   54 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDP   54 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            38999999999999999999988753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=95.50  E-value=0.011  Score=55.21  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.|.|..||||||+++.|++.+
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~   23 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHL   23 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.50  E-value=0.011  Score=59.00  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (279)
T PRK13650         34 EWLSIIGHNGSGKSTTVRLIDGLLE   58 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999998874

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.49  E-value=0.011  Score=56.87  Aligned_cols=26  Identities=42%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~~~   39 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLDAP   39 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccC
Confidence            48999999999999999999987753

>PF05729 NACHT: NACHT domain

Probab=95.49  E-value=0.016  Score=51.28  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=23.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTG  259 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G  259 (476)
                      ++.|.|+.|+||||+++.+...+...+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            678999999999999999998887654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.49  E-value=0.0083  Score=59.57  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999998774

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.48  E-value=0.012  Score=57.58  Aligned_cols=27  Identities=15%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|-+++|.|++||||||+.++|..+|.
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            356899999999999999999999884

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.47  E-value=0.0085  Score=55.14  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.|++|||||||.+.|..++.
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.47  E-value=0.011  Score=58.51  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         48 AVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            389999999999999999998865

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.46  E-value=0.011  Score=55.88  Aligned_cols=25  Identities=36%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            3899999999999999999988764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.46  E-value=0.0096  Score=57.96  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         30 QITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc
Confidence            4899999999999999999997764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=95.46  E-value=0.011  Score=58.47  Aligned_cols=25  Identities=32%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        46 e~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         46 TVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4899999999999999999998874

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.45  E-value=0.012  Score=55.44  Aligned_cols=25  Identities=40%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        27 EALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.45  E-value=0.011  Score=57.40  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         30 QVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4899999999999999999998764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.45  E-value=0.012  Score=58.57  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~NGsGKSTLl~~l~Gl~~   55 (277)
T PRK13652         31 SRIAVIGPNGAGKSTLFRHFNGILK   55 (277)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999998764

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.45  E-value=0.012  Score=55.49  Aligned_cols=24  Identities=29%  Similarity=0.164  Sum_probs=21.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.44  E-value=0.012  Score=57.42  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..+..
T Consensus        32 e~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244         32 EVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4899999999999999999988763

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.44  E-value=0.012  Score=56.00  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=95.44  E-value=0.012  Score=60.93  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 ei~~iiG~nGsGKSTLlk~L~Gl~~   56 (343)
T PRK11153         32 EIFGVIGASGAGKSTLIRCINLLER   56 (343)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4899999999999999999998774

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=95.43  E-value=0.014  Score=64.21  Aligned_cols=38  Identities=13%  Similarity=0.039  Sum_probs=31.1

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...|.+|.+.|.+||||||+|+.+....     ...+|+.|.+
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~l  403 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTL  403 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHH
Confidence            3568899999999999999998877653     3578899875

Note that the EC number for the kinase function is: 2.7.1.78

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.43  E-value=0.0095  Score=58.78  Aligned_cols=26  Identities=35%  Similarity=0.447  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p   51 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKP   51 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            48999999999999999999988753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=95.43  E-value=0.012  Score=56.96  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=22.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|+|.|.-||||||+++.|+..|.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~   24 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLG   24 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999884

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.43  E-value=0.0084  Score=57.83  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999998875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.43  E-value=0.01  Score=58.06  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         34 SITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc
Confidence            3899999999999999999998875

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.42  E-value=0.013  Score=57.75  Aligned_cols=34  Identities=38%  Similarity=0.294  Sum_probs=26.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      -.|.|+|+.||||||+.+.|...+...+.++++|
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~i  161 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTI  161 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEE
T ss_pred             eEEEEECCCccccchHHHHHhhhccccccceEEe
Confidence            4788999999999999998887776543344444

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.42  E-value=0.012  Score=59.04  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         34 EFVGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3899999999999999999998774

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=95.42  E-value=0.029  Score=63.28  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -+|+|.|++||||||+++.|..++..
T Consensus       508 e~vaIvG~SGsGKSTLl~lL~gl~~p  533 (711)
T TIGR00958       508 EVVALVGPSGSGKSTVAALLQNLYQP  533 (711)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            37999999999999999999988754

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.42  E-value=0.012  Score=61.57  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++.|.||||||||||-+.|+.+..
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999998875

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=95.41  E-value=0.022  Score=54.65  Aligned_cols=40  Identities=30%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH-HHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD-YLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~-~lL~~~G~~v~vISlDD  269 (476)
                      +.-++.|.|++|+|||+||..+. +.+.+.|.+|..++++.
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee   58 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE   58 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence            34589999999999999997655 44444388999998764

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=95.40  E-value=0.026  Score=55.10  Aligned_cols=37  Identities=27%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      ...+|.|-|.=||||||.++.|...|...|.+|.+.-
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr   38 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR   38 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3578999999999999999999999999998776653

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=95.40  E-value=0.012  Score=56.93  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        29 ELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK06526 transposase; Provisional

Probab=95.39  E-value=0.01  Score=59.35  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=29.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .-|.|.||+|+|||+||..|...+...|.+|..++..+
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~  136 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ  136 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence            35789999999999999999877766677765544443

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.39  E-value=0.012  Score=58.52  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~l~G~nGsGKSTLl~~i~Gl~~   53 (275)
T PRK13639         29 EMVALLGPNGAGKSTLFLHFNGILK   53 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999988764

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.39  E-value=0.021  Score=54.37  Aligned_cols=41  Identities=22%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC------CCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG------RKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G------~~v~vISlDDF  270 (476)
                      .--++.|.|++|+||||||..+.......+      .+|.-|++++=
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~   64 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA   64 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence            345899999999999999988876654334      56777777663

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.39  E-value=0.013  Score=57.24  Aligned_cols=23  Identities=30%  Similarity=0.670  Sum_probs=21.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      -++||.|++|||||||.+.|..+
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         30 SVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhh
Confidence            48999999999999999999865

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=95.38  E-value=0.012  Score=57.19  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14239         32 EITALIGPSGSGKSTLLRSINRMN   55 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc
Confidence            489999999999999999998763

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.37  E-value=0.015  Score=54.86  Aligned_cols=40  Identities=28%  Similarity=0.266  Sum_probs=30.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .-+.|.|++|+|||.||.++...+-..|..|..++.++++
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~   87 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL   87 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence            3588999999999999999987776678888777766654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.37  E-value=0.0099  Score=56.28  Aligned_cols=25  Identities=36%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          27 EALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.37  E-value=0.02  Score=57.28  Aligned_cols=28  Identities=32%  Similarity=0.352  Sum_probs=23.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ..|+-+.|.|++|||||||...|-..+.
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            5689999999999999999987766554

This is thought to be an ATPase involved in viral DNA packaging [].

>PF12846 AAA_10: AAA-like domain

Probab=95.36  E-value=0.022  Score=55.24  Aligned_cols=32  Identities=25%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      +.|.|.+||||||++..+...+-..|..+.++
T Consensus         4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~   35 (304)
T PF12846_consen    4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF   35 (304)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE
Confidence            67999999999999988877766678777777

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.36  E-value=0.021  Score=59.25  Aligned_cols=37  Identities=30%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -|.|+|++|||||||.++|...+.......-++++.|
T Consensus       146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd  182 (323)
T PRK13833        146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED  182 (323)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence            4679999999999999998877642212233455554

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.35  E-value=0.01  Score=58.53  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         29 EVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998864

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=95.35  E-value=0.026  Score=51.78  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          235 GFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       235 GIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -.++-.|+||||+|..|+..+.+.|.+|.+|-.|-.
T Consensus         4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q   39 (169)
T cd02037           4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY   39 (169)
T ss_pred             EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            355788999999999999999988999999999853

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.35  E-value=0.015  Score=56.26  Aligned_cols=51  Identities=24%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREA  283 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~  283 (476)
                      -|||.|+||||||||-..|+.+=..-+-.|.++-++=+-+..+.+..++.+
T Consensus        38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~   88 (228)
T COG4181          38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRAR   88 (228)
T ss_pred             eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcc
Confidence            699999999999999988775532223345555555444555555555443

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=95.35  E-value=0.012  Score=64.36  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -.|||.|++||||||+++.|.+.+..
T Consensus       356 e~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         356 EKVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            47999999999999999999988864

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.35  E-value=0.012  Score=57.52  Aligned_cols=25  Identities=28%  Similarity=0.507  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         31 KITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccC
Confidence            4899999999999999999998764

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=95.34  E-value=0.032  Score=49.76  Aligned_cols=41  Identities=34%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             EEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +|+|.| ..|+||||+|..|+..|.+.|.+|.+|.+|-+.-.
T Consensus         2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~   43 (157)
T PF13614_consen    2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS   43 (157)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence            788888 66999999999999999999988999999887753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=95.34  E-value=0.015  Score=56.09  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|...+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~g~~~~   52 (232)
T cd03300          27 EFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            48999999999999999999888753

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.33  E-value=0.018  Score=54.15  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.|.|++||||||+|..+...+
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~   25 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS   25 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc
Confidence            68999999999999999887654

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.33  E-value=0.018  Score=57.33  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+.+.|++|+|||+|+.+|...|...|.+|..++..++.
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~  139 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM  139 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence            467899999999999999999887778888877665543

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=95.33  E-value=0.012  Score=56.11  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          28 QLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            4899999999999999999998764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.32  E-value=0.013  Score=60.54  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||++.|..++.
T Consensus        48 e~~~lvG~sGsGKSTLlk~i~Gl~~   72 (331)
T PRK15079         48 ETLGVVGESGCGKSTFARAIIGLVK   72 (331)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Confidence            3899999999999999999988774

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.32  E-value=0.011  Score=57.78  Aligned_cols=25  Identities=36%  Similarity=0.557  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         31 QITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            3899999999999999999998875

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=95.32  E-value=0.025  Score=57.52  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=33.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|.|--|+||||+|-.|...|.+.|.+|.+|=+|
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~D   37 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCD   37 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEec
Confidence            688889999999999999999999899999999887

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.31  E-value=0.025  Score=53.20  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDFY  271 (476)
                      ..+-++||+|+|||.+|+.|.+.|. ........+-+-.|-
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~   44 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS   44 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence            4788999999999999999999996 222244444444443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK05973 replicative DNA helicase; Provisional

Probab=95.31  E-value=0.025  Score=56.31  Aligned_cols=39  Identities=23%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      --++-|+|++|+||||||-.+.......|.+|..++++.
T Consensus        64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe  102 (237)
T PRK05973         64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY  102 (237)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence            347889999999999999776654444588888887654

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.31  E-value=0.023  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=17.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+..|.||+|+||||+...+...+
T Consensus        18 ~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   18 GITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHHHHh
Confidence            378899999999998765555554

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.31  E-value=0.014  Score=58.03  Aligned_cols=25  Identities=36%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        39 e~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419         39 ETVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999987764

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=95.31  E-value=0.028  Score=54.03  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|. +-.|+||||+|..|...|...|.+|.+|-+|-
T Consensus         3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~   40 (246)
T TIGR03371         3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP   40 (246)
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            56665 47899999999999999998899999999995

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>CHL00181 cbbX CbbX; Provisional

Probab=95.31  E-value=0.024  Score=57.57  Aligned_cols=42  Identities=29%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR----KSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~----~v~vISlDDF  270 (476)
                      ..++.|-+.|++|+||||+|+.+...+...|.    .+..++.+++
T Consensus        57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l  102 (287)
T CHL00181         57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL  102 (287)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence            34566889999999999999999998876543    2445555544

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.31  E-value=0.013  Score=57.17  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         33 RVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc
Confidence            489999999999999999998765

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=95.30  E-value=0.015  Score=55.61  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|...+.
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G~~~   56 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGGLRS   56 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999987653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=95.30  E-value=0.012  Score=58.21  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        47 e~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         47 KITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccC
Confidence            3899999999999999999998764

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.29  E-value=0.014  Score=56.94  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         32 EITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            489999999999999999998765

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=95.29  E-value=0.013  Score=57.11  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      -++||.|++|||||||.+.|..+
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         34 EIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCC
Confidence            48999999999999999999875

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=95.28  E-value=0.012  Score=57.59  Aligned_cols=25  Identities=36%  Similarity=0.474  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        28 SLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4899999999999999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=95.28  E-value=0.014  Score=60.71  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..+++.
T Consensus        32 ei~gIiG~sGaGKSTLlr~I~gl~~p   57 (343)
T TIGR02314        32 QIYGVIGASGAGKSTLIRCVNLLERP   57 (343)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            48999999999999999999887753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.28  E-value=0.013  Score=62.22  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -...|+|.|++|||||||++.|...++
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g  244 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFN  244 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999998863

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.27  E-value=0.015  Score=60.72  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.|++|||||||.+.|..++.
T Consensus        33 e~~~llGpsGsGKSTLLr~IaGl~~   57 (351)
T PRK11432         33 TMVTLLGPSGCGKTTVLRLVAGLEK   57 (351)
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCC
Confidence            3899999999999999999998775

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.27  E-value=0.015  Score=58.27  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635         34 EWVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3899999999999999999998775

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=95.27  E-value=0.015  Score=57.54  Aligned_cols=25  Identities=32%  Similarity=0.584  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        37 e~~~i~G~nGsGKSTLl~~l~Gl~~   61 (264)
T PRK14243         37 QITAFIGPSGCGKSTILRCFNRLND   61 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4899999999999999999998764

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.25  E-value=0.024  Score=58.64  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .|.|+|++|||||||.++|...+........+++++|
T Consensus       150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd  186 (319)
T PRK13894        150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIED  186 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcC
Confidence            5889999999999999988765432222334455554

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.24  E-value=0.013  Score=55.31  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        32 ~~~~i~G~nG~GKSTLl~~i~G~~~~   57 (204)
T cd03250          32 ELVAIVGPVGSGKSSLLSALLGELEK   57 (204)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence            48999999999999999999887753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.24  E-value=0.011  Score=58.41  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl~~p   56 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGLVAP   56 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999987753

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.23  E-value=0.015  Score=56.70  Aligned_cols=26  Identities=31%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +-++.|.|++|+||||+++.+...+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            34688999999999999999988775

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=95.23  E-value=0.014  Score=57.74  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~G~~~   58 (265)
T PRK10253         34 HFTAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            3899999999999999999988764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.23  E-value=0.015  Score=58.44  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         34 SYVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3899999999999999999988764

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.22  E-value=0.017  Score=52.34  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.|++|||||||.+.|..++.
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999987764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.22  E-value=0.015  Score=60.80  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ..|.|+|++|||||||.++|...+.
T Consensus       163 ~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHHcccC
Confidence            3689999999999999999887764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.22  E-value=0.015  Score=58.33  Aligned_cols=37  Identities=27%  Similarity=0.475  Sum_probs=28.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -++||.|++|||||||.+.|..++..   ..-.|..|+..
T Consensus        34 e~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~   70 (287)
T PRK13641         34 SFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGYH   70 (287)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEE
Confidence            38999999999999999999887643   23335555543

>PF13479 AAA_24: AAA domain

Probab=95.21  E-value=0.022  Score=54.90  Aligned_cols=34  Identities=35%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ++++.|.|-|++|+||||||..+        .++.+|.+|+=
T Consensus         1 ~~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g   34 (213)
T PF13479_consen    1 KKPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENG   34 (213)
T ss_pred             CCceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence            35789999999999999999877        46788888754

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.21  E-value=0.012  Score=56.35  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        27 SVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998774

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.20  E-value=0.015  Score=57.15  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        39 e~~~i~G~nGsGKSTLl~~i~Gl~~   63 (258)
T PRK14268         39 SVTALIGPSGCGKSTFIRCLNRMND   63 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999987764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.19  E-value=0.012  Score=54.51  Aligned_cols=42  Identities=33%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      -|.+.|++|||||||+++|...-......=.+...|++--++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTP   44 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTP   44 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECC
Confidence            377899999999999998875432222222445556665443

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=95.19  E-value=0.012  Score=57.61  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         29 KITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4899999999999999999998764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.19  E-value=0.013  Score=60.28  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        53 e~~~I~G~nGsGKSTLl~~L~Gl~~p   78 (320)
T PRK13631         53 KIYFIIGNSGSGKSTLVTHFNGLIKS   78 (320)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            38999999999999999999988753

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=95.18  E-value=0.016  Score=60.22  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaGl~~   49 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISGLTR   49 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999998764

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.18  E-value=0.014  Score=55.14  Aligned_cols=37  Identities=27%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH--HHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF--RVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL--~~~G~~v~vISlDDFY  271 (476)
                      -++||.|++|||||||.+.|..++  ..   ..--|..|+--
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~   74 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRP   74 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEe
Confidence            489999999999999999998876  43   22335556543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	476
1odf_A	290	Structure Of Ygr205w Protein Length = 290		5e-32

>pdb|1ODF|A Chain A, Structure Of Ygr205w Protein Length = 290

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 134/266 (50%), Gaps = 23/266 (8%)
Query: 228 YLPWWY---------IGFSAPQGCGK--TTLAFALDYLFRVTGRKS-ATISIDDFYLTAE 275
           Y+P W+         I FS PQG GK  T++      + +  G KS    SIDDFYLT E
Sbjct: 19  YIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE 78
Query: 276 GQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTK--EGTKMKLPRYDKSAYNG 333
            Q KL E  + N LL+ RG  G+HD++L  E L  I    +  +   + LP+YDKS + G
Sbjct: 79  DQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKG 138
Query: 334 RGDRADPSTWPEIEGPLTVVLYEGWMLGFKPL--PVEVVKAVDPQLETVNKNLEAYFD-A 390
            GDR    T  +I+ P+ + + EGW LGF P+   +E    +   +  VN  L  Y D  
Sbjct: 139 EGDRC--PTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLL 196
Query: 391 W-DKFIKAW-IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYL 448
           W +  IK+  IV    + + VY WRLQ E  +      GM+DE+V  FV RY+P+Y  YL
Sbjct: 197 WRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYL 256
Query: 449 PTLYSEGPNGSDPEHTLIIEIDDGRN 474
                    GS    TL + ID  RN
Sbjct: 257 NDFVRSESLGSIA--TLTLGIDSNRN 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	476
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	8e-46
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	2e-19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	1e-08
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	2e-06
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	4e-06
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	1e-05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	2e-05
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	2e-04
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	2e-04

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score =  160 bits (405), Expect = 8e-46
 Identities = 90/255 (35%), Positives = 124/255 (48%), Gaps = 14/255 (5%)

Query: 232 WYIGFSAPQGCGKTTLAFAL-DYLFRVTG--RKSATISIDDFYLTAEGQAKLREANRGNA 288
            +I FS PQG GK+  +  + ++L    G  +     SIDDFYLT E Q KL E  + N 
Sbjct: 32  LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNK 91

Query: 289 LLEFRGNAGSHDLQLSVETLTAI--SKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEI 346
           LL+ RG  G+HD++L  E L  I  +    +   + LP+YDKS + G GDR    T  +I
Sbjct: 92  LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDR--CPTGQKI 149

Query: 347 EGPLTVVLYEGWMLGFKPLPVEVVKAV--DPQLETVNKNLEAYFDAW---DKFIKAWIVI 401
           + P+ + + EGW LGF P+   +         +  VN  L  Y D      +     IV 
Sbjct: 150 KLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVF 209

Query: 402 KIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDP 461
              + + VY WRLQ E  +      GM+DE+V  FV RY+P+Y  YL         GS  
Sbjct: 210 TTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIA 269

Query: 462 EHTLIIEIDDGRNPI 476
             TL + ID  RN  
Sbjct: 270 --TLTLGIDSNRNVY 282

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 38/223 (17%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY--LTAEGQAKLREANRGNALLE 291
           I  +   G G +T+    D +FR  G K+ +I  D F+    A+ +A+L           
Sbjct: 8   ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATF 67

Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPST---WPEIEG 348
              +  +++L+              E  + +   Y             P     W + + 
Sbjct: 68  SHFSYEANELKELERVFREY----GETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDS 123

Query: 349 PLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSC 408
              ++ YEG         V +    D ++  V                          + 
Sbjct: 124 DSHLLFYEGLHGAVVNSEVNIAGLADLKIGVV-----------------------PVINL 160

Query: 409 VYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAY-LPT 450
            +  ++  + A R     G + E V D + R + AY    +P 
Sbjct: 161 EWIQKIHRDRATR-----GYTTEAVTDVILRRMHAYVHCIVPQ 198

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 48/219 (21%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           +  S   G GK+TL+  L       G  +  + +D F+L       L         L  +
Sbjct: 25  VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD---NRLLEPRGL----LPRK 77

Query: 294 GNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVV 353
           G   + D +       A+    K   ++  P +D++               E+     V 
Sbjct: 78  GAPETFDFEGFQRLCHAL----KHQERVIYPLFDRARDIAIAGA------AEVGPECRVA 127

Query: 354 LYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFD-AWDKFIKAWIVIKIKDPSCVYEW 412
           + EG  L F                   ++L A +D +    ++          + +   
Sbjct: 128 IIEGNYLLFDAPG--------------WRDLTAIWDVSI--RLEV-------PMADLEAR 164

Query: 413 RLQAEIAMREAGNPGMSDEEVKDFVSR-YLPAYHAYLPT 450
            +Q  +        G++ +          L    A    
Sbjct: 165 LVQRWLDH------GLNHDAAVARAQGNDLANARAIEAA 197

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 16/132 (12%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           +G       GKTTLA  L    R  G       +DD  +    +AK           E+ 
Sbjct: 25  LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE---RAKRYHTGNEEW-FEYY 80

Query: 294 GNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVV 353
                 D++     L    +L K   ++ LP YD             S          ++
Sbjct: 81  YLQ--WDVEWLTHQL--FRQL-KASHQLTLPFYDHETDT-------HSKRTVYLSDSDMI 128

Query: 354 LYEGWMLGFKPL 365
           + EG  L  K  
Sbjct: 129 MIEGVFLQRKEW 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 71/501 (14%), Positives = 143/501 (28%), Gaps = 169/501 (33%)

Query: 86  HKFSHMPTHLSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERAQVSSVQ 145
           H   HM     + +           Q   +L   E          C  +      + S +
Sbjct: 2   HHHHHMDFETGEHQ----------YQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKE 49

Query: 146 DLFAFICSGP--------LIDKMGFSKEKI-----GDSIDK---WIA------------- 176
           +    I            L   +   +E++      + +     ++              
Sbjct: 50  E-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 177 ---YNSYLCRLFQLNELY----LTFPQKVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYL 229
              Y     RL+  N+++    ++  Q              +K++       LR  K   
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPY------------LKLR--QALLELRPAK--- 151

Query: 230 PWWYIGFSAPQGCGKTTLAF--ALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGN 287
               +      G GKT +A    L Y  +V  +    I    F+L       L+  N   
Sbjct: 152 ---NVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKI----FWLN------LKNCNSPE 196

Query: 288 ALLE--------FRGN---AGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKS------- 329
            +LE           N      H   + +   +  ++L +    +K   Y+         
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKPYENCLLVLLNV 253

Query: 330 -------AYNGR------------GDRADPSTWPEI-----EGPLT----VVLYEGWMLG 361
                  A+N               D    +T   I        LT      L   + L 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LD 312

Query: 362 FKP--LPVEVVKAVDPQ-LETVNKNLEAYFDAWD--KFIKAWIVIKIKDPSCV-----YE 411
            +P  LP EV+   +P+ L  + +++      WD  K +    +  I + S +      E
Sbjct: 313 CRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAE 370

Query: 412 WR-LQAEIAM-REAGN-P---------GMSDEEVKDFVS---------RYLPAYHAYLPT 450
           +R +   +++   + + P          +   +V   V+         +        +P+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 451 LYSE--GPNGSDPE-HTLIIE 468
           +Y E      ++   H  I++
Sbjct: 431 IYLELKVKLENEYALHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 53/343 (15%), Positives = 100/343 (29%), Gaps = 102/343 (29%)

Query: 143 SVQDLFAFICSG-PLIDKM-GFSKEKIGDSIDKWIAYNSYLC-RLFQLNEL---YLTFPQ 196
             QDL   + +  P    +     E I D +  W  +    C +L  + E     L   +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 197 KVGFFTTTYLFSCGVKIKFLSMCPSLRMEKIYLPWWYIGFSAPQ----GCGKTTLAFALD 252
               F    +F     I      P++ +  I   W+ +  S          K +L     
Sbjct: 371 YRKMFDRLSVFPPSAHI------PTILLSLI---WFDVIKSDVMVVVNKLHKYSL----- 416

Query: 253 YLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAIS 312
            + +    K +TISI   YL                           +L++ +E   A+ 
Sbjct: 417 -VEK--QPKESTISIPSIYL---------------------------ELKVKLENEYALH 446

Query: 313 KLTKEGTKMKLPRYD-KSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVK 371
           +       + +  Y+    +    D  D    P ++       Y    +G     +E   
Sbjct: 447 R------SI-VDHYNIPKTF----DSDDLIP-PYLDQ------YFYSHIGHHLKNIE--- 485

Query: 372 AVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSD- 430
                 E +      + D   +F++     KI+  S    W     I         +   
Sbjct: 486 ----HPERMTLFRMVFLD--FRFLEQ----KIRHDS--TAWNASGSIL------NTLQQL 527

Query: 431 EEVKDFVSRYLPAYHAYLPT----LYSEGPNGSDPEHTLIIEI 469
           +  K ++    P Y   +      L     N    ++T ++ I
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 25/131 (19%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKS-----ATISIDDFYLTAEGQAKLREANRGNA 288
           IG S     GK+T+   +  L      +        +S D FY         +       
Sbjct: 28  IGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY---------KVLTAEQK 78

Query: 289 LLEFRGNAG-----SHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYN--GRGDRADPS 341
               +G        + D  L   TL  I     EG  +++P YD   ++         P+
Sbjct: 79  AKALKGQYNFDHPDAFDNDLMHRTLKNI----VEGKTVEVPTYDFVTHSRLPETTVVYPA 134

Query: 342 TWPEIEGPLTV 352
                EG L  
Sbjct: 135 DVVLFEGILVF 145

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 21/98 (21%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           IG +     GKTTLA AL       G + A + +D +Y        L E  R N      
Sbjct: 9   IGIAGGTASGKTTLAQALARTL---GERVALLPMDHYYKDLG-HLPLEERLRVNYD---- 60

Query: 294 GNAGSH----DLQLSVETLTAISKLTKEGTKMKLPRYD 327
                H    DL L +E   A+      G  +++P YD
Sbjct: 61  -----HPDAFDLALYLEHAQAL----LRGLPVEMPVYD 89

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 29/172 (16%)

Query: 232 WYIGFSAPQGCGKTTLAFALDYLF--RVTGRKSATISIDDFYLTAEGQAKLREANRGNAL 289
           + IG +     GK+T A  L  L        +   ++ D F        +    +R    
Sbjct: 91  FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHR---- 146

Query: 290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEG 348
              +G   S++ +  +  +T++    K G+     P Y    Y+       P     +  
Sbjct: 147 ---KGFPESYNRRALMRFVTSV----KSGSDYACAPVYSHLHYD-----IIPGAEQVVRH 194

Query: 349 PLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIV 400
           P  +++ EG  +      + V    D            Y DA  + I+ W V
Sbjct: 195 P-DILILEGLNVLQTGPTLMVSDLFD---------FSLYVDARIEDIEQWYV 236

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 25/131 (19%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKS-----ATISIDDFYLTAEGQAKLREANRGNA 288
           IG S     GK+++   +  L               +S D FY         R       
Sbjct: 25  IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY---------RVLTSEQK 75

Query: 289 LLEFRGNAG-----SHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYN--GRGDRADPS 341
               +G        + D +L ++TL  I     EG  +++P YD  +++         P+
Sbjct: 76  AKALKGQFNFDHPDAFDNELILKTLKEI----TEGKTVQIPVYDFVSHSRKEETVTVYPA 131

Query: 342 TWPEIEGPLTV 352
                EG L  
Sbjct: 132 DVVLFEGILAF 142

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 42/233 (18%)

Query: 232 WYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNAL 289
           + I  +     GK+T A  L  L       R+   I+ D F    +   +     +    
Sbjct: 81  YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKK---- 136

Query: 290 LEFRGNAGSHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEG 348
              +G   S+D+   V+ ++ +    K G   +  P Y    Y+   D        +   
Sbjct: 137 ---KGFPESYDMHRLVKFVSDL----KSGVPNVTAPVYSHLIYDVIPDG------DKTVV 183

Query: 349 PLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSC 408
              +++ EG  +    +            + V+ ++  Y DA +  ++ W + +      
Sbjct: 184 QPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI--YVDAPEDLLQTWYINR------ 235

Query: 409 VYEWRLQAEIAMREAGN-----PGMSDEEVKDFVSRY-----LPAYHAY-LPT 450
              +    E A  +  +       ++ EE                     LPT
Sbjct: 236 ---FLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPT 285

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 60/240 (25%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFYLTAEGQAKLREANRGNALLE 291
           IG +     GK+T +  L  L            I+ D F  +    AKL +      L++
Sbjct: 95  IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS---NAKLEKQG----LMK 147

Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEGPL 350
            +G   S+D+   +  L AI    K G + +++P Y    Y+    +       EI    
Sbjct: 148 RKGFPESYDMPSLLRVLNAI----KSGQRNVRIPVYSHHYYDIVRGQY------EIVDQP 197

Query: 351 TVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFD------AWDKFIKAWIVIKI- 403
            +V+ EG  +    +           L+ +   +  +FD      A  + I+ W + ++ 
Sbjct: 198 DIVILEGLNILQTGVR--------KTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVL 249

Query: 404 -------KDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRY-----LPAYHAY-LPT 450
                  KDP   + +  Q            MS+ EV  F                 LP 
Sbjct: 250 SFWRTTFKDPHSYFHYLTQ------------MSETEVAAFAKHVWNEINKVNLMENILPY 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	100.0
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	100.0
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.96
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.95
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.89
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.84
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.7
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.62
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.57
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.24
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.91
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.88
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.58
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.41
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.32
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.25
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.24
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.23
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.97
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.96
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.93
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.85
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.85
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.83
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.83
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.81
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.8
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.76
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.74
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.74
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.72
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.72
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.71
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.68
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.68
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.68
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.67
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.65
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.64
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.63
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.62
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.62
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.62
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.62
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.61
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.58
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.57
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.55
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.55
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.54
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.54
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.52
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.51
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.51
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.51
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.5
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.5
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.48
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.48
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.48
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.48
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.45
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.44
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.43
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.43
1via_A	175	Shikimate kinase; structural genomics, transferase	97.43
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.42
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.42
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.41
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.41
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.4
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.4
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.4
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.39
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.39
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.39
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.34
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.32
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.3
2og2_A	359	Putative signal recognition particle receptor; nuc	97.3
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.29
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.29
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.26
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.25
2xxa_A	433	Signal recognition particle protein; protein trans	97.25
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.22
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.22
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.21
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.2
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.18
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.18
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.17
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.16
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.16
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.16
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.16
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.14
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.12
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.11
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.1
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.06
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.05
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.02
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.99
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.98
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.98
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.97
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.97
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.94
3bos_A	242	Putative DNA replication factor; P-loop containing	96.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.87
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.86
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.81
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.81
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.81
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.8
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.8
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.79
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.79
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.76
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.75
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.74
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.74
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.69
3end_A	307	Light-independent protochlorophyllide reductase ir	96.69
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.67
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.67
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.66
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.63
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.62
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.61
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.6
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.58
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.57
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.53
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.53
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.48
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.46
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.42
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.42
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.41
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.39
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.37
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.36
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.35
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.34
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.34
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.32
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.31
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.27
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.26
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.25
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.25
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.25
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.25
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.24
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.23
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.22
1g6h_A	257	High-affinity branched-chain amino acid transport	96.2
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.19
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.19
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.19
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.18
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.18
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.17
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.17
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.16
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.13
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.12
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.1
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	96.09
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.06
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.06
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.05
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.04
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.03
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.03
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.02
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.01
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.0
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.98
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	95.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.95
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.95
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	95.95
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.93
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.92
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	95.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.89
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.87
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.86
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.86
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.85
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.85
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.85
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	95.84
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.81
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	95.79
2qgz_A	308	Helicase loader, putative primosome component; str	95.79
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.78
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.78
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.77
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.76
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.74
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.74
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.74
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	95.73
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.71
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	95.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.71
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.7
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.69
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.66
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	95.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.64
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.62
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.61
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.6
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.59
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.59
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.57
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.57
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.55
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.54
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.52
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.49
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	95.48
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.45
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	95.45
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.43
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.42
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.41
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.38
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.37
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.35
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.34
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.34
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.33
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	95.32
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	95.32
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.32
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.32
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.31
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.31
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.31
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.3
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.29
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.27
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.26
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.23
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	95.21
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	95.21
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.19
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.19
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	95.17
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.16
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	95.13
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.1
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	95.1
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.05
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.05
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.03
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.02
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.01
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.97
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.95
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	94.95
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.88
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.88
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.87
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.8
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.8
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.79
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.76
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.75
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.71
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.7
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.69
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.58
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.57
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.57
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.56
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.55
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.55
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.54
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.54
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.53
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.53
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.48
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.47
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.47
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	94.47
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.46
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.46
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.45
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.44
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.43
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.42
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.41
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.37
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.37
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.33
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.32
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.32
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.3
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	94.3
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.25
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.24
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.2
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.18
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.17
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	94.14
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.09
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.07
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.05
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.03
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.03
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.02
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.95
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.94
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	93.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.92
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	93.92
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	93.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.88
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.84
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	93.84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.83
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	93.82
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.82
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.8
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.79
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.78
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.75
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.72
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.71
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	93.71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.67
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.64
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.61
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.61
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	93.6
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.59
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	93.57
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.56
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.54
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.54
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.52
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.5
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	93.46
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.45
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.44
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.43
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.43
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.41
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.34
2fna_A	357	Conserved hypothetical protein; structural genomic	93.32
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.27
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.26
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	93.25
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.24
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.22
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.21
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	93.2
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	93.2
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.2
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.17
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	93.16
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	93.15
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.11
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	93.1
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	93.08
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.05
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	93.05
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.03
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	93.03
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	93.03
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	93.0
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	92.98
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	92.9
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	92.87
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.86
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	92.85
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.83
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	92.83
1tue_A	212	Replication protein E1; helicase, replication, E1E	92.83
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	92.78
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.77
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	92.76
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	92.74
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	92.73
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.72
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.7
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.7
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	92.68
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	92.66
3ice_A	422	Transcription termination factor RHO; transcriptio	92.64
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.61
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.61
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	92.61
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.6
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.6
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.53
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	92.53
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.52
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.51
3igf_A	374	ALL4481 protein; two-domained protein consisting o	92.5
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	92.5
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	92.47
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.47
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	92.47
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	92.4
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.33
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.33
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	92.32
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.31
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	92.3
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	92.28
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.26
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	92.23
2chq_A	319	Replication factor C small subunit; DNA-binding pr	92.22
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.2
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.19
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	92.08
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	92.05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	92.02
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.97
2r44_A	331	Uncharacterized protein; putative ATPase, structur	91.93
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	91.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.87
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.83
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	91.83
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	91.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.81
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	91.78
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	91.77
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	91.77
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.75
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	91.73
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.72
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	91.68
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	91.65
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	91.61
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.59
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	91.58

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=100.00  E-value=8.1e-40  Score=325.00  Aligned_cols=238  Identities=37%  Similarity=0.584  Sum_probs=200.4

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC--CCeEEE-eccccccCHHHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTG--RKSATI-SIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLS  304 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G--~~v~vI-SlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL  304 (476)
                      .++|.+|||+|++|||||||++.|..+|...|  .+++++ ++|+||++..++..+...++.|++++.+|+|+++|.+++
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l  107 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL  107 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence            35789999999999999999999999997644  455556 999999999988887766666789999999999999999


Q ss_pred             HHHHHHhhhhhcCC------ceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhh--ccCch
Q 044604          305 VETLTAISKLTKEG------TKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVK--AVDPQ  376 (476)
Q Consensus       305 ~e~L~~Lk~~~k~G------~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~--~~d~~  376 (476)
                      .++|..|+    .|      +.+.+|.||+....|+++|.+...|..+  +.+|||+||++++.+|...+...  ..++.
T Consensus       108 ~~~l~~l~----~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~  181 (290)
T 1odf_A          108 QEVLNTIF----NNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPILQGIENNDLLTGD  181 (290)
T ss_dssp             HHHHHHHT----C------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCCSCTTTCSSSCTT
T ss_pred             HHHHHHhh----ccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccchhhhhcccchhh
Confidence            99999995    55      6799999999998899999876557777  56999999999988876432211  12346


Q ss_pred             hhHHhHHHhhhhh-hhhhccceE---EEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhh
Q 044604          377 LETVNKNLEAYFD-AWDKFIKAW---IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLY  452 (476)
Q Consensus       377 l~~vn~~L~dy~D-lw~ifVDa~---I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~  452 (476)
                      ++.+|++|.+|.+ +|.. +|.+   |+|++++.+++++||++||+.|++..+.|||+|+|.+|+++|||+|+.|++++.
T Consensus       182 l~~~n~~l~~y~~~l~~~-~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~  260 (290)
T 1odf_A          182 MVDVNAKLFFYSDLLWRN-PEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFV  260 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTC-TTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh-hhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHH
Confidence            7889999988876 5532 4555   999999999999999999988877656899999999999999999999999999


Q ss_pred             hc-CCCCCCCCceEEEEeCCCCCC
Q 044604          453 SE-GPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       453 ~~-~P~~a~~~~~Lvl~id~~r~v  475 (476)
                      ++ .|++   +|+|||++|++|+|
T Consensus       261 ~~~~~~~---~adlvl~~~~~~~~  281 (290)
T 1odf_A          261 RSESLGS---IATLTLGIDSNRNV  281 (290)
T ss_dssp             HHTCSSS---SEEEEEEECTTSCE
T ss_pred             HhccCCC---CCCEEEEECCCCCE
Confidence            87 6653   79999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=2.5e-38  Score=319.65  Aligned_cols=274  Identities=17%  Similarity=0.208  Sum_probs=213.2

Q ss_pred             CCCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhhcCC---c
Q 044604          155 PLIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLSMCP---S  221 (476)
Q Consensus       155 ~l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~~~~---~  221 (476)
                      ..++|+.|+|++       |++|+.         +|.++.|+|| .++++++   ++|+||+++|+.++...+...   .
T Consensus        12 ~~~~~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~y~pl~rll~~~~~~~~~l~~~~~   81 (321)
T 3tqc_A           12 EITPYLQFNRQQ-------WGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVT---EIYLPLSRLLSFYVTARQTLQQATY   81 (321)
T ss_dssp             -CCSEEEEEHHH-------HTC------CCCCHHHHHHTTTTHHHHCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEECHHH-------HHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHH---HHHHHHHHHHHHhhcchHHHHHHHH
Confidence            357999999999       999975         9999999997 4788877   999999999999988732111   1


Q ss_pred             cc-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCC
Q 044604          222 LR-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGS  298 (476)
Q Consensus       222 ~~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t  298 (476)
                      .+ +....++|+||||+|++|||||||++.|..++...  +..+.+|++|+||++..++..       ++++..+|+|++
T Consensus        82 ~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~-------~~~~~~~g~P~~  154 (321)
T 3tqc_A           82 QFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEK-------QGLMKRKGFPES  154 (321)
T ss_dssp             HHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHH-------TTCGGGTTSGGG
T ss_pred             HHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhh-------HHHHhhccCccc
Confidence            12 33345789999999999999999999999999753  567999999999999876543       245677899999


Q ss_pred             ccHHHHHHHHHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchh
Q 044604          299 HDLQLSVETLTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQL  377 (476)
Q Consensus       299 ~D~~lL~e~L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l  377 (476)
                      +|.+++.++|..|+    +|+ .+.+|+||+.+++    +.+. .+..+ .+.+||||||+++++.+.....-      .
T Consensus       155 ~D~~~l~~~L~~L~----~g~~~v~~P~yd~~~~~----r~~~-~~~~v-~~~dIVIvEGi~lL~~~~~~~~~------~  218 (321)
T 3tqc_A          155 YDMPSLLRVLNAIK----SGQRNVRIPVYSHHYYD----IVRG-QYEIV-DQPDIVILEGLNILQTGVRKTLQ------Q  218 (321)
T ss_dssp             BCHHHHHHHHHHHH----TTCSSEEEEEEETTTTE----EEEE-EEEEE-CSCSEEEEECTTTTCCCCCSSSS------S
T ss_pred             ccHHHHHHHHHhhh----ccccccccchhhhhccc----cccC-ceeec-cCCCEEEEEcccccccccccccc------c
Confidence            99999999999994    787 8999999999865    4432 23445 55699999999999865210000      0


Q ss_pred             hHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHhHHhh
Q 044604          378 ETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREA----------GNPGMSDEEVKDFVSRYLPAYHAY  447 (476)
Q Consensus       378 ~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~----------~~~GmS~EeV~~Fv~r~~Paye~Y  447 (476)
                        -+..+.+++|+ .+|||+       +.+..++|+++|+...|..          .+.+++++|+.+++..+|+.  ..
T Consensus       219 --~~~~l~~~~D~-~I~Vda-------~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~--~~  286 (321)
T 3tqc_A          219 --LQVFVSDFFDF-SLFVDA-------QAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNE--IN  286 (321)
T ss_dssp             --CCCCGGGGCSE-EEEEEC-------CHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHH--TH
T ss_pred             --hhhhhhhhcCe-EEEEEC-------CHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHh--cc
Confidence              00136677777 777777       7899999999999877653          24589999999999999966  55


Q ss_pred             hhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604          448 LPTLYSE-GPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       448 ~~~l~~~-~P~~a~~~~~Lvl~id~~r~v  475 (476)
                      .+++.++ .|++  .+|+|||.++.+|.|
T Consensus       287 ~pn~~~~I~ptr--~~Adlil~~g~~~~v  313 (321)
T 3tqc_A          287 KVNLMENILPYK--NRAQLILEKAADHSI  313 (321)
T ss_dssp             HHHHHHHTGGGG--GGCSEEEEECTTSCE
T ss_pred             ccCHHHhCccCc--cCceEEEecCCCCcE
Confidence            6677665 7888  789999999999986

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.96  E-value=1.9e-29  Score=252.87  Aligned_cols=267  Identities=17%  Similarity=0.166  Sum_probs=196.1

Q ss_pred             CCCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhhc-C--Cc
Q 044604          155 PLIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLSM-C--PS  221 (476)
Q Consensus       155 ~l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~~-~--~~  221 (476)
                      .++||+.|+|++       |.+|+.         ++.++.++++ ..+..+.   .+|.|+.+.++.++.+... +  ..
T Consensus         6 ~~~~~~~~~r~~-------~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~---~~y~p~~~~~~~~~~~~~~~~~~~~   75 (312)
T 3aez_A            6 EPSPYVEFDRRQ-------WRALRMSTPLALTEEELVGLRGLGEQIDLLEVE---EVYLPLARLIHLQVAARQRLFAATA   75 (312)
T ss_dssp             CCCSEEEEEHHH-------HHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeECHHH-------HHHHHhcCCCCCCHHHHHhccCCCCeEEeeehh---hhhhhHHHHHHHHHhhhhHHHHHHH
Confidence            467899999999       999974         8889999997 3666665   7789999999988655210 1  01


Q ss_pred             cc-cc----cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CCeEEEeccccccCHHHHHHHHHcccCCccccccC
Q 044604          222 LR-ME----KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT-G-RKSATISIDDFYLTAEGQAKLREANRGNALLEFRG  294 (476)
Q Consensus       222 ~~-~~----~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG  294 (476)
                      .| +.    ....++.+|||+|++|||||||++.|..++... | .++.+|++|+||++...++.+       .++..+|
T Consensus        76 ~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~-------~~~~~~g  148 (312)
T 3aez_A           76 EFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRR-------NLMHRKG  148 (312)
T ss_dssp             HHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHT-------TCTTCTT
T ss_pred             HhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHH-------HHHHhcC
Confidence            11 11    124568999999999999999999999999765 4 478999999999998555432       2344468


Q ss_pred             CCCCccHHHHHHHHHHhhhhhcCCc-eEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhcc
Q 044604          295 NAGSHDLQLSVETLTAISKLTKEGT-KMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAV  373 (476)
Q Consensus       295 ~P~t~D~~lL~e~L~~Lk~~~k~G~-~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~  373 (476)
                      .|+++|.+.+.+.|..++    .|. .+.+|.||+....    |+... +..+ .+.+|||+||++++.++..       
T Consensus       149 ~~~~~d~~~~~~~L~~l~----~~~~~~~~~~lS~G~~q----Rv~~a-~al~-~~p~ilIlDep~~~~d~~~-------  211 (312)
T 3aez_A          149 FPESYNRRALMRFVTSVK----SGSDYACAPVYSHLHYD----IIPGA-EQVV-RHPDILILEGLNVLQTGPT-------  211 (312)
T ss_dssp             SGGGBCHHHHHHHHHHHH----TTCSCEEEEEEETTTTE----EEEEE-EEEE-CSCSEEEEECTTTTCCCSS-------
T ss_pred             CChHHHHHHHHHHHHHhC----CCcccCCcccCChhhhh----hhhhH-HHhc-cCCCEEEECCccccCCcch-------
Confidence            999999999999999994    454 4889999986543    54322 2334 4459999999999975311       


Q ss_pred             CchhhHHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHHh
Q 044604          374 DPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGN----------PGMSDEEVKDFVSRYLPA  443 (476)
Q Consensus       374 d~~l~~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~----------~GmS~EeV~~Fv~r~~Pa  443 (476)
                              ..+.+++|+ .+|||+       +.+.+.+|+++|+..+|+...          .|||++++.+|+..+|+.
T Consensus       212 --------~~l~~~~D~-~I~V~a-------~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~  275 (312)
T 3aez_A          212 --------LMVSDLFDF-SLYVDA-------RIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRT  275 (312)
T ss_dssp             --------CCGGGGCSE-EEEEEE-------CHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHH
T ss_pred             --------HHHHHhcCc-EEEEEC-------CHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHh
Confidence                    135566665 455555       779999999999988776432          599999999999987765


Q ss_pred             HHhhhhhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604          444 YHAYLPTLYSE-GPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       444 ye~Y~~~l~~~-~P~~a~~~~~Lvl~id~~r~v  475 (476)
                        ...+++... .|++  .+|++||.++.+|.|
T Consensus       276 --~~~p~~~~~i~p~~--~~ADlii~~~~~~~v  304 (312)
T 3aez_A          276 --INRPNLVENILPTR--PRATLVLRKDADHSI  304 (312)
T ss_dssp             --THHHHHHHTTGGGG--GGCSEEEEECTTSCE
T ss_pred             --ccHHHHHHhccCCC--CCCeEEEecCCCCce
Confidence              333434332 3554  467799999999986

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.95  E-value=2e-27  Score=235.96  Aligned_cols=269  Identities=16%  Similarity=0.168  Sum_probs=187.2

Q ss_pred             CCCccccchhhhcccHHHHHHHHH---------HHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-cC--Ccc
Q 044604          156 LIDKMGFSKEKIGDSIDKWIAYNS---------YLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-MC--PSL  222 (476)
Q Consensus       156 l~~~~~f~~e~~~~~i~~w~~l~~---------~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~~--~~~  222 (476)
                      +++|+.|++++       |.+|+.         +...+.++++ ..+..+.   ..|.|+++.++..+.... .+  ...
T Consensus         1 ~~~~~~~~r~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~---~~y~~~~~~i~~~~~~~~~~~~~~~~   70 (308)
T 1sq5_A            1 MTPYLQFDRNQ-------WAALRDSVPMTLSEDEIARLKGINEDLSLEEVA---EIYLPLSRLLNFYISSNLRRQAVLEQ   70 (308)
T ss_dssp             CCSEEEEEHHH-------HHHTCC---C-CCHHHHHHHHHHCTTCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccEEECHHH-------HHHhhhcCCCCCCHHHHHhhhCCccccchHhHH---HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            35899999999       999853         3456667765 3555554   667799999988773310 00  001


Q ss_pred             c-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCc
Q 044604          223 R-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSH  299 (476)
Q Consensus       223 ~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~  299 (476)
                      + +.....++.+|||.|++|||||||++.|..++.  ..+..+.+|++|+|+.+...+...       ++++..|.|+++
T Consensus        71 ~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~-------~~vq~~~~~~~~  143 (308)
T 1sq5_A           71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKER-------GLMKKKGFPESY  143 (308)
T ss_dssp             HHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHH-------TCTTCTTSGGGB
T ss_pred             HhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhC-------CEeecCCCCCCc
Confidence            1 212235678999999999999999999999986  334568899999999876544321       334566889999


Q ss_pred             cHHHHHHHHHHhhhhhcCCce-EEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhh
Q 044604          300 DLQLSVETLTAISKLTKEGTK-MKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLE  378 (476)
Q Consensus       300 D~~lL~e~L~~Lk~~~k~G~~-v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~  378 (476)
                      |...+...+..++    .|.. +..|.||+..++    +.+. .|..+ .+.+|||+||++++..+....    .+++  
T Consensus       144 ~~~~~~~~~~~l~----~~~~~i~~P~~~~~~~~----~~~~-~~~~~-~~~~ivIlEG~~l~~~~~~~~----~~~~--  207 (308)
T 1sq5_A          144 DMHRLVKFVSDLK----SGVPNVTAPVYSHLIYD----VIPD-GDKTV-VQPDILILEGLNVLQSGMDYP----HDPH--  207 (308)
T ss_dssp             CHHHHHHHHHHHT----TTCSCEEECCEETTTTE----ECTT-CCEEE-C-CCEEEEECTTTTCCGGGCT----TSCC--
T ss_pred             cHHHHHHHHHHHh----CCCCceecccccccccC----cccc-cceec-CCCCEEEECchhhCCCccccc----cccc--
Confidence            9999999998883    6666 999999998754    5543 24445 445999999999987521000    0000  


Q ss_pred             HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHHh-----
Q 044604          379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGN----------PGMSDEEVKDFVSRYLPA-----  443 (476)
Q Consensus       379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~----------~GmS~EeV~~Fv~r~~Pa-----  443 (476)
                        ...+.+++|+       .|++++ +.+.+++|+++|+..+|+...          +|||+|++.+++...|+.     
T Consensus       208 --~~~~~~~~D~-------~i~V~~-~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~  277 (308)
T 1sq5_A          208 --HVFVSDFVDF-------SIYVDA-PEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLN  277 (308)
T ss_dssp             --SSCGGGGCSE-------EEEEEC-CHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHH
T ss_pred             --hHHHHHhCCE-------EEEEEC-CHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHH
Confidence              0124444444       555555 679999999999998887654          399999999999987764     


Q ss_pred             HHhhhhhhhhcCCCCCCCCceEEEEeCCCCCC
Q 044604          444 YHAYLPTLYSEGPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       444 ye~Y~~~l~~~~P~~a~~~~~Lvl~id~~r~v  475 (476)
                      ++.|+.+.      +  ..|++||..+.+|.|
T Consensus       278 ~~~~i~~~------~--~~AD~vI~n~~~~~v  301 (308)
T 1sq5_A          278 LKQNILPT------R--ERASLILTKSANHAV  301 (308)
T ss_dssp             HHHTTGGG------G--GGCSEEEEECGGGCE
T ss_pred             HHHHcccc------c--ccCcEEEEeCCCCcE
Confidence            44444433      3  356699999998876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.89  E-value=1.4e-23  Score=215.14  Aligned_cols=169  Identities=13%  Similarity=0.114  Sum_probs=122.4

Q ss_pred             CeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHHHHhhhhh--------------------cC---
Q 044604          261 KSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLT--------------------KE---  317 (476)
Q Consensus       261 ~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L~~Lk~~~--------------------k~---  317 (476)
                      .|++|+|||||++++++..+.  ++ ++++.+||+|+|||..+|.++|+.|++.+                    ..   
T Consensus       155 ~v~vi~mDgFh~~~~~L~~~~--d~-~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  231 (359)
T 2ga8_A          155 IAQIVPMDGFHLSRRCLDLFK--DP-QTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFS  231 (359)
T ss_dssp             SEEEEEGGGGBCCHHHHTTSS--ST-HHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEE
T ss_pred             eEEEEecCcCCCCHHHHhhcc--Cc-chhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccc
Confidence            478999999999999876531  11 23567889999999999999999997530                    00   


Q ss_pred             --CceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhhh-----h
Q 044604          318 --GTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFD-----A  390 (476)
Q Consensus       318 --G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~D-----l  390 (476)
                        .+.|.+|.|||..++    +.++.  ..+.++.+||||||+++|++..              .+..|++++|     +
T Consensus       232 ~~~~~v~~P~yD~~~~d----~~~~~--~~v~~~~~iVIvEGi~LL~e~~--------------~w~~l~~l~D~~~~~~  291 (359)
T 2ga8_A          232 QTIPDIFVPGFNHALKD----PTPDQ--YCISKFTRIVILEGLYLLYDQE--------------NWKKIYKTLADTGALL  291 (359)
T ss_dssp             TTCCCEEEEEEETTTTE----EEEEE--EEECTTCCEEEEEESSTTBCSH--------------HHHHHHHHHHTTTCEE
T ss_pred             ccCceEeeccccCccCC----CCCCc--eEecCCCCEEEEEeehhhcccc--------------chhhhhhccccccceE
Confidence              157999999999865    55532  4554546999999999997521              1346888888     5


Q ss_pred             hhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEEE
Q 044604          391 WDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGM--SDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLIIE  468 (476)
Q Consensus       391 w~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~Gm--S~EeV~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl~  468 (476)
                       .+|||+       +++...+|+++|+.+      +|+  |.|++.+++...      -.++..--.|++  .+|++||+
T Consensus       292 -~i~Vda-------d~ev~~~Rli~R~~~------~Gl~~s~eea~~r~~~~------d~pN~~~I~~~~--~~ad~i~~  349 (359)
T 2ga8_A          292 -VYKIDI-------DYEATEERVAKRHLQ------SGLVTTIAEGREKFRSN------DLLNGRDIDNHL--IKVDNIVH  349 (359)
T ss_dssp             -EEEEEC-------CHHHHHHHHHHHHHH------TTSCSSHHHHHHHHHHC------TTTSSHHHHHTB--CCCTTEEE
T ss_pred             -EEEEEC-------CHHHHHHHHHHhhhc------cCCCCCHHHHHHHHHhc------CchhhHhHhhcC--CCCCEEEE
Confidence             678888       889999999999863      689  999996655532      222221113555  56779999


Q ss_pred             eCCCCC
Q 044604          469 IDDGRN  474 (476)
Q Consensus       469 id~~r~  474 (476)
                      |-.+|.
T Consensus       350 ~~~~~~  355 (359)
T 2ga8_A          350 IRNDHH  355 (359)
T ss_dssp             EECCC-
T ss_pred             ecCCcc
Confidence            988874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.84  E-value=2.5e-21  Score=191.64  Aligned_cols=188  Identities=18%  Similarity=0.246  Sum_probs=128.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHH-HHH--cccCCccccccCCCCCccHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAK-LRE--ANRGNALLEFRGNAGSHDLQLSV  305 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~-la~--~~p~npLl~~rG~P~t~D~~lL~  305 (476)
                      ++++|||+|++||||||+|+.|+..|...|.++.+|++|+||+ +..++.. ++.  .. ++..++..| |+++|.+.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~-g~~~~~~fg-~~~~d~~~l~   81 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA-GDATFSHFS-YEANELKELE   81 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHH-TCTTCSTTS-GGGBCHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhc-cCcCcCCCC-hhhhcHHHHH
Confidence            5679999999999999999999999887778899999999998 5665432 111  11 111233333 8999999999


Q ss_pred             HHHHHhhhhhcCCceEEeecccc-----ccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604          306 ETLTAISKLTKEGTKMKLPRYDK-----SAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV  380 (476)
Q Consensus       306 e~L~~Lk~~~k~G~~v~iP~YD~-----s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v  380 (476)
                      +.|..++    .|+.+..|.|++     ..|.......  ..|..+..+.++||+||++++....               
T Consensus        82 ~~l~~l~----~~~~i~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~vvIvEG~~~~~~~~---------------  140 (290)
T 1a7j_A           82 RVFREYG----ETGQGRTRTYVHDDAEAARTGVAPGNF--TDWRDFDSDSHLLFYEGLHGAVVNS---------------  140 (290)
T ss_dssp             HHHHHHH----HHSCCEECCCC------CCSSCCTTSC--CCCEECCSSCSEEEEEESCTTCBCS---------------
T ss_pred             HHHHHHH----cCCcccceeeccccccccccCCCCCcc--ccccccCCCCCEEEEEecccccccc---------------
Confidence            9998884    567789999965     3332111111  1244554457999999999984210               


Q ss_pred             hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604          381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      ...+.+++|+ .+||++       +.+..++||++|+.     ..+|++.|++.+.+...+|.|+.|+.+...
T Consensus       141 ~~~v~~~~D~-~IfV~a-------~~~~rl~Rrl~Rd~-----~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~  200 (290)
T 1a7j_A          141 EVNIAGLADL-KIGVVP-------VINLEWIQKIHRDR-----ATRGYTTEAVTDVILRRMHAYVHCIVPQFS  200 (290)
T ss_dssp             SCBCGGGCSE-EEEEEE-------CHHHHHHHHHHHTS-----SSCCSCCCCHHHHHHHHHHHHHHHTGGGGG
T ss_pred             hHhHHHhCCE-EEEEEC-------CHHHHHHHHhhhhh-----hhcCCChHHHHHHHHHhCccHHHhhhhhhc
Confidence            0124455555 555555       67888899988864     468999999966665559999999888764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.82  E-value=1.3e-19  Score=168.66  Aligned_cols=178  Identities=17%  Similarity=0.184  Sum_probs=129.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .++.+|||.|++|||||||++.|..++...|..+..|++|+|+.+...+..+       +.+..+|.|.++|...+.+.|
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l   92 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPR-------GLLPRKGAPETFDFEGFQRLC   92 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGG-------TCGGGTTSGGGBCHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHh-------cccccCCCCchhhHHHHHHHH
Confidence            4568999999999999999999999997666778999999999987654321       234556899999999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..|.    .|+.+..|.||+....    +..  +++.+....+++|+||.+++++...              +..+.+++
T Consensus        93 ~~l~----~~~~i~~p~~d~~~~~----~~g--~~~~v~~~~~~~i~eg~~~l~de~~--------------~~~l~~~~  148 (208)
T 3c8u_A           93 HALK----HQERVIYPLFDRARDI----AIA--GAAEVGPECRVAIIEGNYLLFDAPG--------------WRDLTAIW  148 (208)
T ss_dssp             HHHH----HCSCEEEEEEETTTTE----EEE--EEEEECTTCCEEEEEESSTTBCSTT--------------GGGGGGTC
T ss_pred             HHHh----cCCceecccCCccccC----CCC--CceEEcCCCcEEEECCceeccCCch--------------hHHHHHhc
Confidence            9994    6788999999997643    222  2345643348999999998763211              22345555


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHhHHhhhhhhh
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVS-RYLPAYHAYLPTLY  452 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~-r~~Paye~Y~~~l~  452 (476)
                      |+ .+|||+       +.+...+|+++|..      .+|++.+++.+++. +.+|.+ .|+.+..
T Consensus       149 d~-~i~vd~-------~~~~~~~R~~~R~~------~~g~t~~~~~~~~~~~~~~~~-~~i~~~~  198 (208)
T 3c8u_A          149 DV-SIRLEV-------PMADLEARLVQRWL------DHGLNHDAAVARAQGNDLANA-RAIEAAR  198 (208)
T ss_dssp             SE-EEEECC-------CHHHHHHHHHHHHH------HTTCCHHHHHHHHHTHHHHHH-HHHHTTB
T ss_pred             CE-EEEEeC-------CHHHHHHHHHHHHH------hcCCCHHHHHHHHHhccHHHH-HHHHhCC
Confidence            55 455554       55666666676653      36899999976666 578865 5665544

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.79  E-value=8.8e-19  Score=167.80  Aligned_cols=178  Identities=21%  Similarity=0.353  Sum_probs=124.4

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEeccccccC--HHHHHHHHHcccCCccccccCCCCCcc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISIDDFYLT--AEGQAKLREANRGNALLEFRGNAGSHD  300 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISlDDFYl~--~~er~~la~~~p~npLl~~rG~P~t~D  300 (476)
                      ..+|++|||+|++||||||+|+.|+..|...     +.++.+|++|+||..  ..++.+ ...+.    +. .+.|+++|
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~-~~~g~----~~-f~~~~~~d   92 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAK-ALKGQ----FN-FDHPDAFD   92 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHH-HHTTC----SC-TTSGGGBC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhh-hccCC----CC-CCCcchhh
Confidence            4578999999999999999999999987532     456889999999974  322221 11111    12 25799999


Q ss_pred             HHHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604          301 LQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV  380 (476)
Q Consensus       301 ~~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v  380 (476)
                      ++++.+.|+.|    ..|..+.+|.||+..+.    +..  .|..+ .+.++||+||+++++.                 
T Consensus        93 ~~~l~~~L~~l----~~~~~v~~~~~d~~~~~----~~~--~~~~~-~~~~~vIveG~~~~~~-----------------  144 (252)
T 1uj2_A           93 NELILKTLKEI----TEGKTVQIPVYDFVSHS----RKE--ETVTV-YPADVVLFEGILAFYS-----------------  144 (252)
T ss_dssp             HHHHHHHHHHH----HTTCCEEEEEEETTTTE----EEE--EEEEE-CCCSEEEEECTTTTSS-----------------
T ss_pred             HHHHHHHHHHH----HcCCeeecCcccccccc----CCC--ceeee-CCCcEEEEeeeccccC-----------------
Confidence            99999999999    47888999999998754    221  13333 3568999999888642                 


Q ss_pred             hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhh
Q 044604          381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~  453 (476)
                       +.+.+.+|+       .|+|++ +++...+|+.+|+..     .+|++.+++ ..|..+..+.|+.++.+...
T Consensus       145 -~~~~~~~d~-------vi~l~~-~~e~~~~R~~~R~~~-----~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~  204 (252)
T 1uj2_A          145 -QEVRDLFQM-------KLFVDT-DADTRLSRRVLRDIS-----ERGRDLEQILSQYITFVKPAFEEFCLPTKK  204 (252)
T ss_dssp             -HHHHHHCSE-------EEEEEC-CHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHTHHHHHHHHTGGGGG
T ss_pred             -HHHHHhcCe-------eEEEeC-CHHHHHHHHHHHHHh-----hhCCCHHHHHHHHHHhccHHHHHHhhhhhh
Confidence             234555554       444444 667777777776531     357888888 56777777888888766543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.70  E-value=3.8e-18  Score=158.14  Aligned_cols=167  Identities=21%  Similarity=0.285  Sum_probs=107.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .++.+|||.|++||||||+++.|...+...|..+.++++|+|+++..++..   .  ..+. ....+++++|.+.+.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~---~--~~~~-~~~~~~~~~d~~~l~~~v   93 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYH---T--GNEE-WFEYYYLQWDVEWLTHQL   93 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSS---S--SSCH-HHHHHHTSSCHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHh---c--CCCC-ccCCCccccCHHHHHHHH
Confidence            457899999999999999999999999877888889999999998764322   1  1000 000135899999887765


Q ss_pred             -HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhh
Q 044604          309 -TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAY  387 (476)
Q Consensus       309 -~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy  387 (476)
                       ..+    +.|+.+.+|.|+|....    +..  .+ ....+.++|||||++++..                   .+.++
T Consensus        94 ~~~l----~~~~~~~~~~~~~~~~~----~~~--~~-~~~~~~~~vIveg~~l~~~-------------------~~~~~  143 (201)
T 1rz3_A           94 FRQL----KASHQLTLPFYDHETDT----HSK--RT-VYLSDSDMIMIEGVFLQRK-------------------EWRPF  143 (201)
T ss_dssp             GGGT----TTCSEEEEEEEETTTTE----EEE--EE-EECTTCSEEEEEETTTTST-------------------TTGGG
T ss_pred             HHHH----hcCCccccCceeccCCC----CCC--ce-EEeCCCcEEEEechhhccH-------------------HHHhh
Confidence             667    47789999999997311    111  11 2224568999999998731                   23444


Q ss_pred             hhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhh
Q 044604          388 FDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTL  451 (476)
Q Consensus       388 ~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l  451 (476)
                      +|+       .|+|++ +.+..++|+++|+            ++....|..+++|+|+.|+...
T Consensus       144 ~d~-------~i~v~~-~~~~~~~R~~~R~------------~~~~~~~~~~~~~~~~~y~~~~  187 (201)
T 1rz3_A          144 FDF-------VVYLDC-PREIRFARENDQV------------KQNIQKFINRYWKAEDYYLETE  187 (201)
T ss_dssp             CSE-------EEEECC-C--------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCE-------EEEEeC-CHHHHHHHHhcCC------------HHHHHHHHhheeHHHHHHhCCC
Confidence            444       455544 4566665555442            2233667799999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.62  E-value=4.8e-15  Score=136.53  Aligned_cols=184  Identities=24%  Similarity=0.356  Sum_probs=126.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .++.+|||.|++|||||||++.|..++..   .+.++++|+||.+..........+     +. .+.|+++|.+.+.+.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~l   74 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLR-----VN-YDHPDAFDLALYLEHA   74 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHH-----SC-TTSGGGBCHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcC-----CC-CCChhhhhHHHHHHHH
Confidence            35689999999999999999999998842   588999999997422110000000     11 2568899999999999


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      +.++    .++.+..|.|+.+..    .+...  ...+ ...+++|+||.+++.+                  +.+..++
T Consensus        75 ~~~~----~~~~~~~~~~~~s~g----~~~~~--~~~~-~~~~~li~~~~ll~~d------------------e~~~~~~  125 (211)
T 3asz_A           75 QALL----RGLPVEMPVYDFRAY----TRSPR--RTPV-RPAPVVILEGILVLYP------------------KELRDLM  125 (211)
T ss_dssp             HHHH----TTCCEEECCEETTTT----EECSS--CEEE-CCCSEEEEESTTTTSS------------------HHHHTTC
T ss_pred             HHHH----cCCCcCCCcccCccc----CCCCC--eEEe-CCCcEEEEeehhhccC------------------HHHHHhc
Confidence            8884    567788899988753    23221  2344 4568999999999852                  3455555


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCCceEEE
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPEHTLII  467 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~~~Lvl  467 (476)
                      |. .+|||+       +.+....++++|+.+     .+|++...+ .++...+.|.|+.|+++....        +++||
T Consensus       126 d~-~i~ld~-------~~~~~~~r~l~r~~~-----~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------aD~ii  184 (211)
T 3asz_A          126 DL-KVFVDA-------DADERFIRRLKRDVL-----ERGRSLEGVVAQYLEQVKPMHLHFVEPTKRY--------ADVIV  184 (211)
T ss_dssp             SE-EEEEEC-------CHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHTHHHHHHHTTGGGGGG--------CSEEE
T ss_pred             CE-EEEEeC-------CHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHhhhhhHHHhcccchhc--------CeEEE
Confidence            65 555554       556666667776532     358888887 667888899999998876532        34777


Q ss_pred             EeCC
Q 044604          468 EIDD  471 (476)
Q Consensus       468 ~id~  471 (476)
                      .-+.
T Consensus       185 ~~~~  188 (211)
T 3asz_A          185 PRGG  188 (211)
T ss_dssp             ESTT
T ss_pred             eCCC
Confidence            6543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.57  E-value=3.9e-14  Score=134.96  Aligned_cols=176  Identities=23%  Similarity=0.352  Sum_probs=114.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEecccccc--CHHHHHHHHHcccCCccccccCCCCCccH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISIDDFYL--TAEGQAKLREANRGNALLEFRGNAGSHDL  301 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISlDDFYl--~~~er~~la~~~p~npLl~~rG~P~t~D~  301 (476)
                      .++.+|||.|++|||||||++.|..++...     ...+.++.+|+||.  +..+.......     .+. .+.|+++|.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~-----~~~-~~~~~~~~~   96 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKG-----QYN-FDHPDAFDN   96 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTT-----CCC-TTSGGGBCH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhcc-----CCC-CCCcccccH
Confidence            356899999999999999999999988431     23567899999885  33333222111     111 245778999


Q ss_pred             HHHHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHh
Q 044604          302 QLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVN  381 (476)
Q Consensus       302 ~lL~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn  381 (476)
                      +.+.+.|..|.    .+....+|.||.....    |+..  +..+ .+.++||+||+.++..                  
T Consensus        97 ~~~~~~L~~l~----~~~~~~~~~ls~g~~~----r~~~--~~~~-~~~~~lilDg~~~~~~------------------  147 (245)
T 2jeo_A           97 DLMHRTLKNIV----EGKTVEVPTYDFVTHS----RLPE--TTVV-YPADVVLFEGILVFYS------------------  147 (245)
T ss_dssp             HHHHHHHHHHH----TTCCEEECCEETTTTE----ECSS--CEEE-CCCSEEEEECTTTTTS------------------
T ss_pred             HHHHHHHHHHH----CCCCeecccccccccC----ccCc--eEEe-cCCCEEEEeCcccccc------------------
Confidence            99999998883    5667788889876543    4422  2334 4459999999877632                  


Q ss_pred             HHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhh
Q 044604          382 KNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       382 ~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      ..+.+++       |..|++.++ .+....+++.|+.      ..|++.+++ .++..+..|.++.|+.+...
T Consensus       148 ~~l~~~~-------~~~i~v~th-~~~~~~r~~~r~~------~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~  206 (245)
T 2jeo_A          148 QEIRDMF-------HLRLFVDTD-SDVRLSRRVLRDV------RRGRDLEQILTQYTTFVKPAFEEFCLPTKK  206 (245)
T ss_dssp             HHHHTTC-------SEEEEEECC-HHHHHHHHHHHHT------C---CHHHHHHHHHHTHHHHHHHHTGGGGG
T ss_pred             HHHHHhc-------CeEEEEECC-HHHHHHHHHHHHH------HcCCCHHHHHHHHHHhhhHhHHHhCCcchh
Confidence            2343333       555666554 3444455555442      568899999 56777888998988776653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.24  E-value=1.5e-12  Score=119.88  Aligned_cols=158  Identities=16%  Similarity=0.165  Sum_probs=91.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      .++.+|||.|++||||||+++.|...+.    .+.+|++|+|+.+......      ..+-+...+.+++.|...+.+.+
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~i   88 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKPESEIET------DKNGFLQYDVLEALNMEKMMSAI   88 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCCGGGSCB------CTTSCBCCSSGGGBCHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccCHhHhhc------cccCCChhHHHHHhHHHHHHHHH
Confidence            4578999999999999999999987652    5789999999986532100      00111122456678888888877


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..+..    + .+ .|....      +  .     .. ..+.+++|+||..++..                  +.+.+. 
T Consensus        89 ~~~l~----~-~~-~~~~~~------~--~-----~~-~~~~~~vi~eg~~~~~~------------------~~~~~~-  129 (207)
T 2qt1_A           89 SCWME----S-AR-HSVVST------D--Q-----ES-AEEIPILIIEGFLLFNY------------------KPLDTI-  129 (207)
T ss_dssp             HHHHH----H-HT-TSSCCC-------------------CCCCEEEEECTTCTTC------------------GGGTTT-
T ss_pred             HHHHh----C-CC-CCCcCC------C--e-----ee-cCCCCEEEEeehHHcCc------------------HHHHHh-
Confidence            66521    1 00 111110      0  0     11 23458999999765521                  112233 


Q ss_pred             hhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhh
Q 044604          389 DAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLY  452 (476)
Q Consensus       389 Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~  452 (476)
                            .|..|+++++ ++...+|+..          |+++.+++ ..|..++|+.|..+.+...
T Consensus       130 ------~d~~i~l~~~-~~~~~~R~~~----------R~~~~e~~~~~~~~~~~~~~~~~~~~~~  177 (207)
T 2qt1_A          130 ------WNRSYFLTIP-YEECKRRRST----------RVYQPPDSPGYFDGHVWPMYLKYRQEMQ  177 (207)
T ss_dssp             ------CSEEEEEECC-HHHHHHHHHH----------SCCSSCCCTTHHHHTHHHHHHHHHHHGG
T ss_pred             ------cCeeEEEECC-HHHHHHHHHH----------cCCCccchHHHHHHHHhHHHHHHHHHHH
Confidence                  3455566553 4444433322          23444443 3566689998877665543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.91  E-value=1.8e-10  Score=112.94  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.+|++|||+|++||||||+|+.|+. +     .+.+|++|+|+
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~-l-----g~~~id~D~~~  109 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN-L-----GAYIIDSDHLG  109 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH-H-----TCEEEEHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH-C-----CCcEEehhHHH
Confidence            45689999999999999999999984 4     35789999994

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.88  E-value=1.6e-10  Score=117.72  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc--ccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVETL  308 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF--Yl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~L  308 (476)
                      +.+|+|+||+||||||||..|+..|     .+.+|++|+|  |.......    ..|  ..-+..|.|         ..|
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~qvYr~~~i~T----akp--~~eE~~~v~---------hhl   66 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSMQVYQGMDIGT----AKV--TTEEMEGIP---------HYM   66 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSSTTBTTCCTTT----TCC--CTTTTTTCC---------EES
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccccccccccccc----cCC--CHHHHHHHH---------HHH
Confidence            4689999999999999999999887     3789999999  75432100    000  000112222         112


Q ss_pred             HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhhh
Q 044604          309 TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYF  388 (476)
Q Consensus       309 ~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy~  388 (476)
                      ..+    ..+.. .+|+||+.....    ....  ..+..+..|||++|..+..                   +.|.+.+
T Consensus        67 ~di----~~~~~-~~~~~dF~~~a~----~~i~--~i~~~g~~~IlvGGt~ly~-------------------~~l~~~l  116 (340)
T 3d3q_A           67 IDI----LPPDA-SFSAYEFKKRAE----KYIK--DITRRGKVPIIAGGTGLYI-------------------QSLLYNY  116 (340)
T ss_dssp             SSC----BCTTS-CCCHHHHHHHHH----HHHH--HHHHTTCEEEEECCCHHHH-------------------HHHHBCS
T ss_pred             HHH----hCCcc-ccCHHHHHHHHH----HHHH--HHHhCCCcEEEECChhhhH-------------------HHHHhcc
Confidence            223    24434 677787754321    1000  1122455889999998542                   3344332


Q ss_pred             hhhhhccc-eEEEEecCCCc--hhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhh
Q 044604          389 DAWDKFIK-AWIVIKIKDPS--CVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLP  449 (476)
Q Consensus       389 Dlw~ifVD-a~I~L~~~d~d--~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~  449 (476)
                         .+|++ +       |++  ...++|++| .     ..+|  .+.+.++...+-|.|..++.
T Consensus       117 ---~~~~~~~-------d~~~~~Rlrrrl~r-~-----~~~G--~~~l~~~L~~vdP~~a~~I~  162 (340)
T 3d3q_A          117 ---AFEDESI-------SEDKMKQVKLKLKE-L-----EHLN--NNKLHEYLASFDKESAKDIH  162 (340)
T ss_dssp             ---CCC---C-------CHHHHHHHHHHHHT-T-----SSSC--HHHHHHHHHHHCHHHHHHSC
T ss_pred             ---cccCCCC-------ChHHHHHHHHHHHH-H-----HhcC--HHHHHHHHHhhCcHHHhhcC
Confidence               23444 3       444  234555554 2     2344  35677778877777766543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.58  E-value=1.1e-08  Score=95.55  Aligned_cols=110  Identities=18%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH--HHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG--QAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e--r~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      ..-++|||+|+.||||||+++.|+..+     .+.+|.+|+++....+  ..++.+.. +...+   . ++++|.+.|.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~~~~~~~~~~~~i~~~f-G~~~~---~-~g~ldr~~L~~   79 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRIGHEVLEEVKEKLVELF-GGSVL---E-DGKVNRKKLAG   79 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHHTHHHHHHHH-CGGGB---S-SSSBCHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHHHHHHHHHHHHHHHHHh-Chhhc---C-CCCcCHHHHHH
Confidence            346899999999999999999999887     3678999999864332  12222111 11222   2 68899987766


Q ss_pred             HH-HHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccc
Q 044604          307 TL-TAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLG  361 (476)
Q Consensus       307 ~L-~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll  361 (476)
                      .+ ..... ++..+.+..|.+......            .+.....+||+||-+++
T Consensus        80 ~vF~~~~~-~~~l~~i~hP~i~~~~~~------------~~~~~~~~vv~d~pll~  122 (192)
T 2grj_A           80 IVFESREN-LKKLELLVHPLMKKRVQE------------IINKTSGLIVIEAALLK  122 (192)
T ss_dssp             HHTTCHHH-HHHHHHHHHHHHHHHHHH------------HHHTCCEEEEEECTTTT
T ss_pred             HHhCCHHH-HHHHHhhhCHHHHHHHHH------------HHHHcCCEEEEEEecee
Confidence            42 11100 012234567777654321            11111368999987665

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.41  E-value=3.9e-06  Score=74.77  Aligned_cols=38  Identities=13%  Similarity=0.053  Sum_probs=32.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|.+|+|.|++||||||+|+.|+..+     ...+|++|++..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~~   39 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGELLR   39 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHHHH
Confidence            47899999999999999999999877     356789998874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.32  E-value=3.5e-07  Score=84.56  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|++|+|.|++||||||+++.|+. +     ...++.+|+++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D~~~~   39 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-L-----GINVIDADIIAR   39 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEccHHHH
Confidence            468999999999999999999976 4     357899999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.25  E-value=1.6e-05  Score=70.66  Aligned_cols=38  Identities=18%  Similarity=0.036  Sum_probs=32.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.+|+|.|++||||||+|+.|+..+     ...++++|++..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~   42 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAGDLLR   42 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEeeHHHHHH
Confidence            46799999999999999999999887     357889998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.24  E-value=2.1e-06  Score=80.88  Aligned_cols=43  Identities=19%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ....++.+|+|.|++||||||+++.|+..|     .+..+.+|+++..
T Consensus        11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d~~~~~   53 (236)
T 1q3t_A           11 DDKMKTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMYRA   53 (236)
T ss_dssp             ---CCCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHc-----CCceecCCCeeEc
Confidence            344667899999999999999999999877     3578999999863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.23  E-value=5.3e-06  Score=80.14  Aligned_cols=42  Identities=17%  Similarity=0.271  Sum_probs=34.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      ..|++|+|.|++||||||+++.|...|     ....+..|.+|....
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~~~r~~~   48 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGAMYRIAT   48 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCcHHHHHH
Confidence            357899999999999999999999888     357799999986543

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.97  E-value=4.1e-06  Score=79.92  Aligned_cols=155  Identities=18%  Similarity=0.175  Sum_probs=84.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc----cCH-HHHHHHHHcccCCccccccCCCCCccHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY----LTA-EGQAKLREANRGNALLEFRGNAGSHDLQLS  304 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY----l~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL  304 (476)
                      .-+.|||+|+.||||||+++.|+. +     .+.+|..|..-    .+. ....++.+.. +...+.   .-|+.|...|
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~ia~~l~~~~~~~~~~i~~~f-G~~~~~---~dg~ldR~~L   77 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDLIAHRITAPAGLAMPAIEQTF-GPAFVA---ADGSLDRARM   77 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHHTSTTCTTHHHHHHHH-CGGGBC---TTSSBCHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcHHHHHHhcCCcHHHHHHHHHh-ChhhcC---CCCCCcHHHH
Confidence            457899999999999999999876 4     46789999743    222 1122222221 112232   2368998877


Q ss_pred             HHHH-H---HhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHH
Q 044604          305 VETL-T---AISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETV  380 (476)
Q Consensus       305 ~e~L-~---~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~v  380 (476)
                      .+.+ .   .++    .-+.+--|..-.....    ..      . ..+..++|+|.-.++-.                 
T Consensus        78 ~~~vF~d~~~~~----~L~~i~HP~I~~~~~~----~~------~-~~~~~~vv~d~pLL~E~-----------------  125 (210)
T 4i1u_A           78 RALIFSDEDARR----RLEAITHPLIRAETER----EA------R-DAQGPYVIFVVPLLVES-----------------  125 (210)
T ss_dssp             HHHHHHCHHHHH----HHHHHHHHHHHHHHHH----HH------H-TCCSSSEEEECTTCTTC-----------------
T ss_pred             HHHHhCCHHHHH----HHHHHhhHHHHHHHHH----HH------H-hcCCCEEEEEEeccccc-----------------
Confidence            6654 1   111    1123334432211100    00      0 01235788887554410                 


Q ss_pred             hHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhH
Q 044604          381 NKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAY  444 (476)
Q Consensus       381 n~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Pay  444 (476)
                       ..+..+       +|..|++.+ +++...+|-.+|+         |+|.+++.+.+..-+|..
T Consensus       126 -~~~~~~-------~D~vi~V~a-p~e~r~~Rl~~Rd---------g~s~eea~~ri~~Q~~~e  171 (210)
T 4i1u_A          126 -RNWKAR-------CDRVLVVDC-PVDTQIARVMQRN---------GFTREQVEAIIARQATRE  171 (210)
T ss_dssp             -HHHHHH-------CSEEEEEEC-CHHHHHHHHHHHH---------CCCHHHHHHHHHHSCCHH
T ss_pred             -CCcccc-------CCeEEEEEC-CHHHHHHHHHhcC---------CCCHHHHHHHHHHcCChH
Confidence             123333       455555655 4455444443332         899999988888877763

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.96  E-value=0.0002  Score=76.26  Aligned_cols=43  Identities=14%  Similarity=0.106  Sum_probs=38.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...|.+|.++|.+||||||+|+.|+..|...+..+.+|+.|++
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~   74 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY   74 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence            3567899999999999999999999999877889999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.93  E-value=5.3e-06  Score=73.79  Aligned_cols=42  Identities=17%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +.+|.|.|++||||||+++.|+..|...|.+...+++|+++.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r   44 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF   44 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence            468999999999999999999999976666577888888865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.85  E-value=9e-06  Score=74.19  Aligned_cols=39  Identities=18%  Similarity=-0.010  Sum_probs=33.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .+.+|+|.|++||||||+|+.|...+     ...+|+.|+++..
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~   55 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPP   55 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcch
Confidence            46789999999999999999999888     3568999999854

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.85  E-value=9.6e-06  Score=72.07  Aligned_cols=40  Identities=20%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|.|.|++||||||+|+.|+..|...|..+..++.|+++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~   41 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM   41 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence            3789999999999999999999998777778888777765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.83  E-value=9.4e-06  Score=74.76  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=33.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      +.+|||.|++||||||+++.|...+     .+..+.+|++|...
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCcceeehh
Confidence            4689999999999999999999887     35778999998643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.83  E-value=6.8e-06  Score=74.09  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .+|.+|+|+|++||||||+++.|+..    |  +.++.+|+++..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~~~~   44 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDALAAR   44 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHHHHH
Confidence            46899999999999999999998875    3  568999999853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.81  E-value=9.7e-06  Score=71.91  Aligned_cols=38  Identities=13%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.+|.|+|++||||||+++.|+..|   +.....+++|+|.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~~   40 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLI   40 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchHh
Confidence            4689999999999999999999887   3456667899875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.80  E-value=2e-05  Score=72.80  Aligned_cols=40  Identities=18%  Similarity=0.004  Sum_probs=35.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +..+|+|+|++|||||||+..|...|...|.+|.+|..|.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~   42 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   42 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence            3568999999999999999999999988899999998875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.76  E-value=1.2e-05  Score=72.28  Aligned_cols=38  Identities=18%  Similarity=0.074  Sum_probs=33.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.+|+|.|++||||||+|+.|+..+     ....+++|+++.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~~~   48 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTGELLR   48 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHH
Confidence            35689999999999999999999988     367899999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.75  E-value=1.4e-05  Score=72.62  Aligned_cols=40  Identities=20%  Similarity=0.003  Sum_probs=33.9

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +.++.+|+|.|++||||||+|+.|...+     ....|++|+++.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d~~~~   51 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDLLR   51 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeHHHHHH
Confidence            4567899999999999999999998776     357899998764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.74  E-value=2.4e-05  Score=71.60  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++.+|+|.|++||||||+++.|...+...|.-+..+..|++.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR   65 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence            3568999999999999999999999997556544456666654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.74  E-value=1.9e-05  Score=69.04  Aligned_cols=35  Identities=31%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|+|.|++||||||+++.|+..+     ....+..|.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~   37 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGSSFEL   37 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH-----CCCEEECCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCeeecCccccc
Confidence            79999999999999999999887     356789998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.72  E-value=1.3e-05  Score=69.34  Aligned_cols=35  Identities=26%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|+|.|++||||||+|+.| ..+   |  ..++++|+++.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~---g--~~~i~~~~~~~   36 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER---G--AKVIVMSDVVR   36 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT---T--CEEEEHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC---C--CcEEEHhHHHH
Confidence            47999999999999999999 443   3  45788888775

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.72  E-value=3e-05  Score=69.76  Aligned_cols=42  Identities=24%  Similarity=0.187  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .++.+|.|.|.+||||||+++.|...|...|.++.++..|.+
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~   52 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA   52 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence            356899999999999999999999999887888877776654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.71  E-value=2.6e-05  Score=74.88  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=34.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ++.+|.|.|++||||||+|+.|+..|...|..+.+++.|.+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~   43 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI   43 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence            36789999999999999999999998877877766777765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.71  E-value=1.7e-05  Score=71.04  Aligned_cols=39  Identities=18%  Similarity=0.085  Sum_probs=33.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ++.+|+|.|++||||||+|+.|+..|     ....+++|+++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~~~~   46 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTGDLLRS   46 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHHH
Confidence            46789999999999999999999887     3568899987753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.68  E-value=1.9e-05  Score=71.35  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=32.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA  274 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~  274 (476)
                      +|+|+|++||||||+++.|+..|     .+.++.+|+++...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL-----GVPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc-----CCceeccchHHHhh
Confidence            89999999999999999999887     36789999998643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.68  E-value=1.7e-05  Score=69.91  Aligned_cols=36  Identities=25%  Similarity=0.085  Sum_probs=29.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |.+|.|.|++||||||+|+.|+..    .....+|++|.+
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~   37 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDY   37 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHH
Confidence            678999999999999999999872    125678888765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.68  E-value=1.3e-05  Score=73.09  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +++|||.|++||||||+++.|+. +   |  ..++.+|+++.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~~~~   37 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADVVAR   37 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHHHHH
Confidence            36899999999999999999976 3   3  56789999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.67  E-value=2.4e-05  Score=71.31  Aligned_cols=42  Identities=21%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             cCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          226 KIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       226 ~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .....|.+|+|.|++||||||+|+.|+..+.     ..+|++|++..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~-----~~~i~~d~~~r   56 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLG-----IPQISTGELFR   56 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CcEEehhHHHH
Confidence            3456788999999999999999999998873     45789998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.65  E-value=1.6e-05  Score=72.28  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|||+|++||||||+++.|+. +     .+.++.+|+++.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~-----g~~~i~~d~~~~   36 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-L-----GAYVLDADKLIH   36 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-T-----TCEEEEHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-C-----CCEEEEccHHHH
Confidence            3799999999999999999988 5     478899999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.64  E-value=4.3e-05  Score=69.41  Aligned_cols=36  Identities=17%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      +|.+|+|.|++||||||+++.|+..|...|..+..+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~   43 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   43 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            467999999999999999999999998777766443

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.64  E-value=5.7e-05  Score=67.02  Aligned_cols=38  Identities=16%  Similarity=0.095  Sum_probs=32.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...+|+|.|++||||||+++.|...+     ....+..|++..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~   44 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHP   44 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccc
Confidence            35689999999999999999999887     357889998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.63  E-value=1.8e-05  Score=70.88  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=30.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|+|.|++||||||+|+.|+..|.     +.+|++|+++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~~~   38 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVAIE   38 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchHHH
Confidence            3699999999999999999999883     46789998853

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.63  E-value=2.8e-05  Score=71.92  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +++.+|.|.|++||||||+|+.|+..|     ....|++|+++.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~   40 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF-----HAAHLATGDMLR   40 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEehhHHHH
Confidence            356789999999999999999999887     357899999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.62  E-value=3.2e-05  Score=68.96  Aligned_cols=38  Identities=26%  Similarity=0.190  Sum_probs=32.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ++.+|+|.|++||||||+++.|+..+     ....+++|+...
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d~~~~   40 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTGDILR   40 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH-----TCEEECHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-----CCeEecHHHHHH
Confidence            46789999999999999999999877     356788888764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.62  E-value=2.9e-05  Score=69.36  Aligned_cols=37  Identities=30%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|.+|.|.|++||||||+++.|+..|   |  ..+++.|++.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~--~~~i~~D~~~   40 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL---R--LPLLSKDAFK   40 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH---T--CCEEEHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc---C--CeEecHHHHH
Confidence            57899999999999999999999887   2  4568888773

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.62  E-value=2.1e-05  Score=69.33  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.+|+|.|++||||||+++.|...+.     ...+..|++.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~~~   39 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQEI   39 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccHHH
Confidence            35799999999999999999998873     4567777654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.62  E-value=0.00011  Score=76.98  Aligned_cols=44  Identities=30%  Similarity=0.344  Sum_probs=40.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|.+|+++|++||||||++..|...|...|.+|.++..|-|-.
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~  138 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP  138 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence            35899999999999999999999999998899999999997654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.61  E-value=6e-05  Score=68.96  Aligned_cols=39  Identities=23%  Similarity=0.164  Sum_probs=33.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ++.+|+|.|++||||||+++.|...+     ....+..|++...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~   66 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSP   66 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccH
Confidence            45689999999999999999999887     3577889998743

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.58  E-value=5.2e-05  Score=68.84  Aligned_cols=37  Identities=16%  Similarity=0.111  Sum_probs=31.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      ++.+|+|.|++||||||+++.|+..|...+..+.++.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            4679999999999999999999999987777765444

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.57  E-value=3.9e-05  Score=73.03  Aligned_cols=39  Identities=23%  Similarity=0.161  Sum_probs=33.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|++|+|.|++||||||+|+.|...+     ....|++|+...
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~~~~r   65 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTGDLLR   65 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecHHHHH
Confidence            468999999999999999999998877     467889988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.55  E-value=5.7e-05  Score=72.55  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|.|+|++||||||+|+.|+..+     ...+|++|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~-----~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET-----GWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH-----CCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC-----CCeEEeccHHh
Confidence            378999999999999999999887     35789999975

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.54  E-value=0.00015  Score=73.11  Aligned_cols=48  Identities=25%  Similarity=0.182  Sum_probs=41.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG  276 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e  276 (476)
                      .+|.+|+|.|++||||||+++.|..++...+.+|.+...|-|-....+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~e  174 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIE  174 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHH
Confidence            568999999999999999999999999888889999999877665443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.54  E-value=9.5e-05  Score=73.85  Aligned_cols=43  Identities=28%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|.+|+|.|++||||||++..|+..+...|.+|.++..|-|-
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            4678999999999999999999999998888899999999764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.52  E-value=8.2e-05  Score=66.49  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      ++.+|+|.|++||||||+++.|...|...|..+..+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~   39 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   39 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence            467899999999999999999999987656655444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.51  E-value=0.0001  Score=77.53  Aligned_cols=43  Identities=26%  Similarity=0.227  Sum_probs=40.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|.+|.|+|++||||||++..|...|...|.+|.++..|-|..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~  141 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP  141 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            5899999999999999999999999988899999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.51  E-value=2.1e-05  Score=71.67  Aligned_cols=39  Identities=33%  Similarity=0.482  Sum_probs=33.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|+|.|++||||||+++.|...|...|..+.++..++|.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~   40 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG   40 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCC
Confidence            799999999999999999999998767777777666654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.51  E-value=4.6e-05  Score=68.06  Aligned_cols=36  Identities=25%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.+|.|.|++||||||+|+.|+..|     ....+++|++.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~~d~~~   40 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT-----KRILYDSDKEI   40 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEChHHH
Confidence            4578899999999999999999888     35678889884

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.50  E-value=4.6e-05  Score=67.02  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|+|.|++||||||+|+.|+..|.     ..++.+|+++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~~   37 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG-----YEFVDTDIFM   37 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHHH
Confidence            3699999999999999999999883     5678899875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.50  E-value=0.00016  Score=73.38  Aligned_cols=67  Identities=19%  Similarity=0.207  Sum_probs=47.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc--cc--------C-HHHHHHHHHcccCCccccccCCCCCc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YL--------T-AEGQAKLREANRGNALLEFRGNAGSH  299 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF--Yl--------~-~~er~~la~~~p~npLl~~rG~P~t~  299 (476)
                      +.+|.|+||+||||||||..|+..+     ...+|+.|.+  |+        | .+++.    .-|. -+++..++-+.|
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~QvYr~~~igTakp~~~E~~----gvph-hlid~~~~~e~~   72 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSMQVYRGMDIGTAKITAEEMD----GVPH-HLIDIKDPSESF   72 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGGGGBTTCCTTTTCCCHHHHT----TCCE-ESSSCBCTTSCC
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcccceeeeeecCCCCCHHHHc----CCCE-EEeccCChhhhc
Confidence            4688999999999999999998776     4689999998  63        2 22222    1222 256666667788


Q ss_pred             cHHHHHHH
Q 044604          300 DLQLSVET  307 (476)
Q Consensus       300 D~~lL~e~  307 (476)
                      +...+.+.
T Consensus        73 s~~~F~~~   80 (322)
T 3exa_A           73 SVADFQDL   80 (322)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            88655443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.48  E-value=8e-05  Score=68.70  Aligned_cols=42  Identities=19%  Similarity=0.133  Sum_probs=34.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF  270 (476)
                      ..+.+|.|.|++||||||+++.|...|. ..|..+..+..|.+
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            3467899999999999999999999997 56777777766655

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=5.1e-05  Score=69.37  Aligned_cols=36  Identities=28%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..+|+|.|++||||||+++.|+..+     ....+.+|++.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~~d~~~   60 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL-----NVPFIDLDWYI   60 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcchHHH
Confidence            3589999999999999999999888     34578899876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.48  E-value=4.8e-05  Score=69.78  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .|+|.|++||||||+|+.|+..+     ...++++|++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~   37 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY-----EIPHISTGDMFRA   37 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEeeHHHHHHH
Confidence            58999999999999999998877     3567999988753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.48  E-value=5.4e-05  Score=67.80  Aligned_cols=39  Identities=31%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +..+|+|.|++||||||+++.|...+   +...+.+..|++.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~   46 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLW   46 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchh
Confidence            35689999999999999999998763   3445667777764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.45  E-value=0.00011  Score=65.29  Aligned_cols=35  Identities=29%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|.|++||||||+|+.|+..|...|..  ++++|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~--~i~~d~   36 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF--VSLYRE   36 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEeC
Confidence            79999999999999999999998765654  456664

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.45  E-value=4.5e-05  Score=71.07  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=33.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ++.+|.|.|++||||||+|+.|+..+     ....|++|+++..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~~   44 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSGDLLRD   44 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEEechHHHHH
Confidence            46789999999999999999998876     3578999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.44  E-value=6.6e-05  Score=65.85  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +|+|.|++||||||+|+.|+..|.     ..++.+|++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~   35 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN-----IPFYDVDEEV   35 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-----CCEEECcHHH
Confidence            699999999999999999999873     4578999886

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.43  E-value=0.00012  Score=72.45  Aligned_cols=45  Identities=29%  Similarity=0.303  Sum_probs=39.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEeccccccCH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDDFYLTA  274 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDDFYl~~  274 (476)
                      ++.+|+|.|++||||||++..|...+.. .|.+|.++..|-|-...
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a  149 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAA  149 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchH
Confidence            4679999999999999999999999985 68899999999875443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.43  E-value=6.9e-05  Score=66.17  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|+|.|+.||||||+|+.|+..|.     ..++.+|++.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg-----~~~id~D~~~   42 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK-----LEVLDTDMII   42 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHHH
Confidence            4899999999999999999998883     4568888876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.43  E-value=6.4e-05  Score=66.93  Aligned_cols=35  Identities=31%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|.|.|++||||||+|+.|+..|     ....+.+|+++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d~~~~   40 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFLIE   40 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcccHHHH
Confidence            58899999999999999999888     356788998863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.42  E-value=7.7e-05  Score=68.39  Aligned_cols=40  Identities=20%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|+|.|++|||||||++.|..++...|.++..|..|+-.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG   42 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence            3799999999999999999999998877778888888754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.42  E-value=6.8e-05  Score=66.92  Aligned_cols=38  Identities=26%  Similarity=0.164  Sum_probs=31.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+.+|.|.|++||||||+++.|...+     ....+++|+++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d~~~~   47 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS-----GLKYINVGDLAR   47 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHHHHHh
Confidence            34578899999999999999999887     356788887653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.42  E-value=7.2e-05  Score=73.45  Aligned_cols=42  Identities=21%  Similarity=0.076  Sum_probs=34.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ..|.+|.|+|++||||||+|+.|...+.   .....|+.|.|...
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~   72 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQ   72 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHh
Confidence            4688999999999999999999987652   24678899988754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.41  E-value=8.1e-05  Score=67.35  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=31.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH-HHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYL-FRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~l-L~~~G~~v~vISlDDFY  271 (476)
                      ++.+|+|.|++||||||+++.|+.. +     ...++.+|++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~~   46 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLV   46 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHHH
Confidence            4568999999999999999999987 4     46778988875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.41  E-value=0.00016  Score=66.50  Aligned_cols=39  Identities=28%  Similarity=0.229  Sum_probs=34.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..+|+|+|++|||||||++.|...+...|.++.++..|.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            457899999999999999999988888888888888764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.40  E-value=0.00014  Score=72.45  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=38.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ++-+|+|.|++|||||||++.|..++...+.+|.+...|-|-..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~  144 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA  144 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChh
Confidence            57799999999999999999999999877778888888866543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.40  E-value=8.6e-05  Score=70.88  Aligned_cols=42  Identities=24%  Similarity=0.140  Sum_probs=34.7

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...|.+|.|.|++||||||+|+.|...+.   ..+.++..|.|-.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~   70 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRS   70 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHH
Confidence            35688999999999999999999998773   3567788888853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.40  E-value=5e-05  Score=69.76  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=30.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .|+|.|++||||||+|+.|+..+     ...+|++|+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~   37 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDMFRA   37 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHH
Confidence            58999999999999999998766     4568999988753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.39  E-value=0.00017  Score=71.62  Aligned_cols=44  Identities=25%  Similarity=0.085  Sum_probs=37.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .++-+|+|.|++||||||+++.|..++...+.+|.+...|-|-.
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~  141 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA  141 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccch
Confidence            45789999999999999999999999987777888888776543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.39  E-value=0.00014  Score=65.51  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=26.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG  259 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G  259 (476)
                      ++.+|.|.|++||||||+|+.|+..|...|
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g   32 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR   32 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            357899999999999999999999986545

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.39  E-value=0.00065  Score=68.67  Aligned_cols=69  Identities=25%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc--cc---------CHHHHHHHHHcccCCccccccCCCC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF--YL---------TAEGQAKLREANRGNALLEFRGNAG  297 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF--Yl---------~~~er~~la~~~p~npLl~~rG~P~  297 (476)
                      ..|.+|.|+||+||||||||..|+..+     ...+|+.|.+  |+         +.+|+..    -|. -+++..++-+
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~qvY~~~~igTakp~~~E~~~----v~h-hlid~~~~~e   77 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDSALIYKGMDIGTAKPNAEELLA----APH-RLLDIRDPSQ   77 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCTTTTBTTCCTTTTCCCHHHHHH----SCE-ETSSCBCTTS
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEecccccccccccccCCCCCHHHHcC----CCE-EEeccCCccc
Confidence            457789999999999999999998876     4789999985  52         1233332    222 2566667777


Q ss_pred             CccHHHHHHH
Q 044604          298 SHDLQLSVET  307 (476)
Q Consensus       298 t~D~~lL~e~  307 (476)
                      .|+...+.+.
T Consensus        78 ~~s~~~f~~~   87 (316)
T 3foz_A           78 AYSAADFRRD   87 (316)
T ss_dssp             CCCHHHHHHH
T ss_pred             cccHHHHHHH
Confidence            8888765544

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.34  E-value=0.00022  Score=66.43  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ..||.|+|+.||||||+++.|+..|
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999999988

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.32  E-value=8e-05  Score=68.40  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      |++|+|+|++||||||+++.|+..+     ....+.+|++|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~-----g~~~~~~d~~~~~   40 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL-----SMIYVDTGAMYRA   40 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc-----CCceecCChHHHH
Confidence            6789999999999999999998876     3578999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.30  E-value=7.8e-05  Score=69.03  Aligned_cols=39  Identities=21%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +|.+|.|.|++||||||+++.|+..|.     ...+++|+++..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-----~~~i~~d~~~~~   42 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ-----LAHISAGDLLRA   42 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC-----CEECCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHHHHHHH
Confidence            467899999999999999999998883     467888888754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.30  E-value=0.00025  Score=72.55  Aligned_cols=43  Identities=26%  Similarity=0.096  Sum_probs=37.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++-+|+|.|++|||||||++.|..++...+.+|.+...|-|-
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            4678999999999999999999999998777788888887654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.29  E-value=0.0002  Score=74.65  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc--cccCH---------HHHHHHHHcccCCccccccCCCCCc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD--FYLTA---------EGQAKLREANRGNALLEFRGNAGSH  299 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD--FYl~~---------~er~~la~~~p~npLl~~rG~P~t~  299 (476)
                      +.+|+|+||+||||||||..|...+.     ..+|+.|+  +|..-         +++.    .-|. -+++..++-+.|
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds~QvYr~l~i~T~kp~~~E~~----gv~h-hlid~~~~~~~~   71 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDSMQVYKDIPIITNKHPLQERE----GIPH-HVMNHVDWSEEY   71 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCTTTTBSSCTTTTTCCCGGGTT----TCCE-ESCSCBCTTSCC
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCccceecccccccCCCCHHHHc----Cchh-hcCCccChHhHh
Confidence            45899999999999999999998883     57899999  67422         1111    1122 245555556677


Q ss_pred             cHHHHHHH-HHHhhhhhcCCc
Q 044604          300 DLQLSVET-LTAISKLTKEGT  319 (476)
Q Consensus       300 D~~lL~e~-L~~Lk~~~k~G~  319 (476)
                      +...+.+. ...|.+....|+
T Consensus        72 s~~~F~~~a~~~i~~i~~~g~   92 (409)
T 3eph_A           72 YSHRFETECMNAIEDIHRRGK   92 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCC
Confidence            77655433 333333224554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.29  E-value=0.00028  Score=70.75  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=38.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++.+|+|.|++|+||||++..|...+...|.+|.++..|-|-
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            4678999999999999999999999998889999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.26  E-value=0.00011  Score=68.06  Aligned_cols=37  Identities=19%  Similarity=0.137  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...|.|.|++||||||+|+.|+..|     ...+|++|++..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~   41 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTGDMLR   41 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-----CceEEehhHHHH
Confidence            4678999999999999999999888     357899999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.25  E-value=0.00017  Score=67.67  Aligned_cols=39  Identities=23%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ..+..|.|.|++||||||+|+.|+..|     .+..|++|+++.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~   52 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATGDMLR   52 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHHHH
Confidence            456789999999999999999999888     357899998864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.25  E-value=0.00032  Score=73.26  Aligned_cols=45  Identities=27%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccC
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLT  273 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~  273 (476)
                      .+|.+|.|+|.+|+||||++..|+..|... |.+|.++..|-|-..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~  143 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA  143 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            468899999999999999999999999988 999999999976543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.24  E-value=0.00011  Score=66.18  Aligned_cols=26  Identities=27%  Similarity=0.140  Sum_probs=23.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ++.+|||.|++||||||+++.|...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999998776

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.22  E-value=0.00025  Score=71.80  Aligned_cols=37  Identities=32%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+.+|.|+|++||||||+|..|+..+     ...+|+.|++.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~q   40 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSAL   40 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccchh
Confidence            35689999999999999999999877     47899999984

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.22  E-value=0.00019  Score=64.84  Aligned_cols=25  Identities=40%  Similarity=0.357  Sum_probs=22.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ..+|||.||+|||||||++.|..++
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3589999999999999999998875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.21  E-value=0.00033  Score=74.84  Aligned_cols=43  Identities=26%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++.||+|.|++|||||||++.|..++...+.+|.+...|-|-
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR  333 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence            4678999999999999999999999998777788777788764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.20  E-value=0.00016  Score=69.10  Aligned_cols=36  Identities=28%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..+|+|.|++||||||+++.|...|.     ...+..|..|
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg-----~~~~d~g~i~   62 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN-----WRLLDSGAIY   62 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT-----CEEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC-----CCcCCCCcee
Confidence            46899999999999999999998872     4556777776

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.18  E-value=0.0004  Score=69.83  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ..+++|+|+|.+|+|||||+..|...+...|.+|.++..|
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            3578999999999999999999999887779999999988

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.18  E-value=0.00037  Score=74.31  Aligned_cols=43  Identities=35%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|.+|+|+|.+||||||++..|...|...|.+|.+++.|-|-
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            4688999999999999999999999998889999999988754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.17  E-value=0.00017  Score=64.88  Aligned_cols=36  Identities=28%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|+|.|++||||||+++.|...+   + ..+.+..|+|.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~---~-g~~~i~~d~~~   38 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQL---D-NSAYIEGDIIN   38 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS---S-SEEEEEHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhccc---C-CeEEEcccchh
Confidence            489999999999999999997633   1 23567777764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.16  E-value=0.00042  Score=62.93  Aligned_cols=38  Identities=16%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||++.|...+...+.+|..++.+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            48999999999999999999977766677888888765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.16  E-value=0.00017  Score=75.38  Aligned_cols=43  Identities=33%  Similarity=0.272  Sum_probs=38.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.+|+|+|++|+||||++..|...+...|.+|.++..|-|.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            3578999999999999999999999998889999999999764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.16  E-value=0.00024  Score=63.53  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=31.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF  270 (476)
                      ...|+|.|++|+|||||++.|...+. ..|..+..++.+++
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~   78 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL   78 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            34789999999999999999998886 45766666555444

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.16  E-value=0.00021  Score=66.75  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|.|.|++||||||+|+.|+..+   |  ..+|++|++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l---g--~~~i~~dd~~r   36 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY---S--LAHIESGGIFR   36 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---C--CeEEchHHHHH
Confidence            68999999999999999999887   2  46799998874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.14  E-value=0.0002  Score=64.66  Aligned_cols=26  Identities=12%  Similarity=0.065  Sum_probs=22.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ..+|+|.||+|||||||++.|...+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34899999999999999999988763

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.14  E-value=0.00061  Score=63.90  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .++.++.+.|..|+||||++..|...|. .|.+|.+|..|-
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~   51 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT   51 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            5678999999999999999999999998 899999999883

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.12  E-value=0.00019  Score=66.23  Aligned_cols=35  Identities=26%  Similarity=0.169  Sum_probs=30.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|+|.|++||||||+|+.|+..+   |  ..+|++|++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~i~~d~~~r   36 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY---G--IPQISTGDMLR   36 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---C--CCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHHHHHH
Confidence            58999999999999999999877   3  46789998874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.11  E-value=0.00024  Score=64.03  Aligned_cols=26  Identities=23%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ++.+|+|.|++||||||+++.|+..|
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999877

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.10  E-value=0.00025  Score=68.31  Aligned_cols=37  Identities=24%  Similarity=0.035  Sum_probs=30.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.+|.|.|++||||||+|+.|...+    ....+|++|.|.
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r   38 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR   38 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence            5789999999999999999998753    246788998653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.08  E-value=0.0002  Score=65.70  Aligned_cols=27  Identities=26%  Similarity=0.167  Sum_probs=23.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .++.+|+|+|++||||||+++.|...+
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            356789999999999999999998876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.08  E-value=0.00015  Score=64.32  Aligned_cols=26  Identities=31%  Similarity=0.248  Sum_probs=19.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.+|.|.|++||||||+|+.|+..|
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56799999999999999999998876

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.06  E-value=0.00063  Score=67.12  Aligned_cols=42  Identities=26%  Similarity=0.262  Sum_probs=37.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++.+|+|.|++|+||||++..|...+...|.+|.++..|-+-
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            578999999999999999999999998888899999888653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.05  E-value=0.00023  Score=65.77  Aligned_cols=27  Identities=30%  Similarity=0.161  Sum_probs=23.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++.+|+|.||+||||||+++.|...+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999987763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.02  E-value=0.00047  Score=61.23  Aligned_cols=41  Identities=24%  Similarity=0.217  Sum_probs=33.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      -+++|.|++|+|||||++.|...+...|.++..+...++..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~   77 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL   77 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH
Confidence            37889999999999999999998876676777777666553

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.98  E-value=0.00043  Score=61.95  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|+|.|++||||||+++.|+..|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999884

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.98  E-value=0.00074  Score=70.58  Aligned_cols=43  Identities=26%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +|.+|+|+|++||||||++..|...+...|.+|.++..|- +.+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~-~r~  139 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRP  139 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS-SCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc-cCc
Confidence            6789999999999999999999999988889999999864 444

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.97  E-value=0.00059  Score=67.60  Aligned_cols=41  Identities=32%  Similarity=0.404  Sum_probs=37.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.+|+|.|++|+||||++..|...+...|.+|.++..|-|-
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            78999999999999999999999998889999999988754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.97  E-value=0.00042  Score=65.35  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|.+|+|.|++||||||+++.|...+   |.  ..++.|+.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l---g~--~~~~~G~i~~   63 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF---GL--QHLSSGHFLR   63 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH---CC--CCEEHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHHHHHH
Confidence            47899999999999999999999877   32  2345555543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.94  E-value=0.00047  Score=70.31  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=32.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++.+|.|+||+|||||||+..|+..|     ...+|+.|..-
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~q   75 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQ   75 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSST
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccc
Confidence            45688999999999999999998876     57899999983

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.92  E-value=0.00094  Score=60.71  Aligned_cols=41  Identities=22%  Similarity=0.052  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ..|.|.|++|+||||+++.+...+...+..+..++.+++..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~   93 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS   93 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            45779999999999999999999887778888888877653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.87  E-value=0.00072  Score=64.43  Aligned_cols=41  Identities=22%  Similarity=0.045  Sum_probs=34.6

Q ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          227 IYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       227 ~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .-++|.||.|.||+||||+|.|+.|+..+     ....||+.|.+.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR   65 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLR   65 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHH
Confidence            34668899999999999999999999887     467788888764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.87  E-value=0.00046  Score=63.47  Aligned_cols=26  Identities=23%  Similarity=0.233  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .-++||.|++|||||||.+.|..++.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34899999999999999999998873

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.86  E-value=0.00047  Score=63.43  Aligned_cols=25  Identities=32%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+|+|.||+|||||||.+.|...+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4789999999999999999988774

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.86  E-value=0.00041  Score=71.53  Aligned_cols=38  Identities=13%  Similarity=-0.079  Sum_probs=32.1

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...|.+|.|+|++||||||+|+.|...+     ....|+.|++
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  292 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL  292 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence            3467899999999999999999988765     4678899987

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.82  E-value=0.00088  Score=72.32  Aligned_cols=42  Identities=21%  Similarity=0.198  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTG-RKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-~~v~vISlDDF  270 (476)
                      .++.+|.|.|.+||||||+|+.|+..|...| ..+..+..|.+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i  436 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV  436 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence            4578999999999999999999999998766 77777777764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.81  E-value=0.0014  Score=65.88  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=34.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ...+|||.|++|||||||.+.|..++...+.++.++..|-
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   93 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence            4579999999999999999999999877777888887764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.81  E-value=0.0014  Score=66.10  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=35.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ...+|||.|++|||||||.+.|...+...+.++.++..|-+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            46799999999999999999999888777788999988744

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.81  E-value=0.0012  Score=66.01  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+..+|||.|++|+|||||+..|...+...|.++.++..|-+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~   95 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   95 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence            356799999999999999999999999877889998887754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.80  E-value=0.0013  Score=62.40  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeE
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSA  263 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~  263 (476)
                      .+..+|.|.|++||||||+++.|...|.. |..+.
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~   57 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI   57 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence            45689999999999999999999999976 66553

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.80  E-value=0.00089  Score=60.58  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..|.|.|++|+||||||+.|...+...|..+..++..++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~   93 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL   93 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence            567799999999999999999988766777776766543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.79  E-value=0.00063  Score=63.09  Aligned_cols=35  Identities=31%  Similarity=0.632  Sum_probs=28.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|||.|++|||||||.+.|..++...|     |..|+|+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-----i~~~g~~~   37 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSG-----VPVDGFYT   37 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT-----CCCEEEEC
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCC-----EEEcCEec
Confidence            689999999999999999999987434     45577665

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.79  E-value=0.0013  Score=60.50  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=31.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||+..+...+...|.+|..++++.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            48999999999999999877766655677888888876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.76  E-value=0.0013  Score=63.61  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||+..|...+... |.+|..++.+.
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            489999999999999999999888765 66787887764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.75  E-value=0.0012  Score=59.96  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .-+++|.|++|||||||+..|..   ..|.+|..++.+.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~   55 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG   55 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence            34899999999999999999887   3467888888876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.74  E-value=0.00047  Score=64.28  Aligned_cols=25  Identities=40%  Similarity=0.426  Sum_probs=16.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH-HHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD-YLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~-~lL  255 (476)
                      ..+|||.||+||||||+++.|. .++
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3589999999999999999998 776

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.74  E-value=0.00098  Score=71.50  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +.+.+|.|.|.+||||||+|+.|+..|...|..+.++..|.+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i  411 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV  411 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence            356899999999999999999999999887888888887754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.72  E-value=0.0016  Score=61.42  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      +..+|.|.|+.||||||+++.|...|...|..|.+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            457899999999999999999999998888877544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.69  E-value=0.0012  Score=59.32  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFAL  251 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L  251 (476)
                      .-+++|.|++|||||||++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            468999999999999999973

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.67  E-value=0.001  Score=60.81  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=22.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|||.|++|||||||.+.|..++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999884

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.67  E-value=0.0015  Score=62.96  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCe
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKS  262 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v  262 (476)
                      .++.+|.|.|++||||||+++.|...|...|..+
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~   58 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH   58 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCe
Confidence            4567899999999999999999999998888873

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.66  E-value=0.00066  Score=63.48  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .-+|||.||+|||||||.+.|..++
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3489999999999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.63  E-value=0.0017  Score=63.05  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=24.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      -+|+|.||+|||||||.+.|..++...
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~   52 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYINQT   52 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCCCC
Confidence            489999999999999999999988653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.62  E-value=0.001  Score=62.35  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=28.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+..+|+|.|++||||||+++.|...    +..+.+...+
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            45789999999999999999988766    4456665554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.61  E-value=0.0012  Score=60.12  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      --+++|.|++|||||||++.|...+.
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999987653

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.60  E-value=0.0014  Score=60.41  Aligned_cols=37  Identities=24%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   38 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3778999999999999999999998899999999985

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.58  E-value=0.001  Score=64.52  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=29.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|+|.|++||||||+++.|...|.     ...+.+|+++
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg-----~~~~d~d~~~   83 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLG-----YTFFDCDTLI   83 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcC-----CcEEeCcHHH
Confidence            3699999999999999999999883     4567777765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.57  E-value=0.002  Score=61.61  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEE
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSAT  264 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~v  264 (476)
                      ..++.+|.|.|+.||||||+++.|...|.. .|..|.+
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~   55 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV   55 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence            346789999999999999999999999988 7887766

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.53  E-value=0.0011  Score=62.68  Aligned_cols=26  Identities=35%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .-+|+|.||+|||||||.+.|..++.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            35899999999999999999988764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.53  E-value=0.0011  Score=63.32  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -++||.|++|||||||.+.|..++..   ..--|..|+
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g   66 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDN   66 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECC
Confidence            38999999999999999999877642   333445554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.48  E-value=0.0014  Score=59.17  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -+|+|.|+.|||||||.+.|..++
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            589999999999999999999988

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.46  E-value=0.0032  Score=62.91  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=36.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ...||+|+|--|+||||+|-.|...|.+.|.+|.+|=.|
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D   85 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD   85 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            457999999999999999999999999999999999999

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.42  E-value=0.003  Score=59.64  Aligned_cols=38  Identities=18%  Similarity=0.240  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~   39 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence            37888999999999999999999998899999999983

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.42  E-value=0.0016  Score=61.27  Aligned_cols=35  Identities=31%  Similarity=0.263  Sum_probs=30.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +|.|.||+||||+|.|+.|+..+     ....||+.|.+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR   36 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILR   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence            67899999999999999999887     467799988875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.41  E-value=0.0032  Score=58.41  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .|.|-|.-||||||.++.|+..|++.|.+|.+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            688999999999999999999999989887655

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.39  E-value=0.0013  Score=62.13  Aligned_cols=34  Identities=21%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ++||.|++|||||||.+.|..++.   +..-.|..|+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g   65 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEG   65 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECC
Confidence            899999999999999999987764   2334455554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.37  E-value=0.0027  Score=66.10  Aligned_cols=41  Identities=15%  Similarity=0.071  Sum_probs=33.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..|.+|.+.|.+||||||+++.|+..+...+..+..++.|+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~   77 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ   77 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence            56789999999999999999999998876566666666665

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.36  E-value=0.0033  Score=57.20  Aligned_cols=39  Identities=18%  Similarity=-0.045  Sum_probs=30.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ...+|+|.|.+|||||||+..|...+... .++.+|..|-
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~   67 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV   67 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence            45789999999999999998888766433 5677787654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.35  E-value=0.0016  Score=63.99  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=26.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ++||.|++|||||||.+.|..++..   ..-.|..|+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G   69 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDN   69 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECC
Confidence            8999999999999999999877642   333444444

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.34  E-value=0.0029  Score=69.29  Aligned_cols=40  Identities=25%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .++.+|.|.|.+||||||+|+.|+..|...|..+..+..|
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD   89 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   89 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence            3678999999999999999999999997767766555433

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.34  E-value=0.0019  Score=61.93  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5899999999999999999988764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.32  E-value=0.0018  Score=60.85  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=24.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|.+|.|.|+.||||||+++.|+..|+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            368999999999999999999998874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.31  E-value=0.0023  Score=60.19  Aligned_cols=27  Identities=15%  Similarity=0.045  Sum_probs=22.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++.+|+|+||+|||||||++.|...+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            445889999999999999999887653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.27  E-value=0.0031  Score=64.13  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=24.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      -+|+|+||+|||||||.+.|...+...
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            389999999999999999999988764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.26  E-value=0.0019  Score=62.38  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=32.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      -.-+||.|++||||||+|+.|+..+     .+..|++||.+..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~gdllR~   45 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKF-----GIPQISTGDMLRA   45 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHH-----TCCEECHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHh-----CCCeeechHHHHH
Confidence            3579999999999999999999887     4668999988753

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.25  E-value=0.0052  Score=55.18  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=32.6

Q ss_pred             EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|+|. +-.|+||||+|..|...|.+.|.+|.+|-.|
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D   39 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD   39 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            67776 6788999999999999999999999999999

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.25  E-value=0.0019  Score=62.08  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -++||.|++|||||||.+.|..++.   +..-.|..|+
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g   70 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDG   70 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECC
Confidence            3899999999999999999987764   2334444554

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.25  E-value=0.003  Score=60.43  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=28.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc----CCCeEEE
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT----GRKSATI  265 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~----G~~v~vI  265 (476)
                      .+..+|.|.|+.||||||+++.|...|...    |..|.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~   63 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT   63 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence            356789999999999999999999999877    8777543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.25  E-value=0.0033  Score=54.35  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ..|.|.|++|+||||+++.+...+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHh
Confidence            34679999999999999999988754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.24  E-value=0.002  Score=62.51  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999987764

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.23  E-value=0.0046  Score=59.42  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+|+|+|-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~   40 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            47888999999999999999999998899999999984

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.22  E-value=0.003  Score=61.72  Aligned_cols=42  Identities=14%  Similarity=0.048  Sum_probs=34.2

Q ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          227 IYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       227 ~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..+.|..|.+.||+|+|||++|+.|+..+   |..+..++..++.
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~   73 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELE   73 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhh
Confidence            34567889999999999999999999888   5677777765553

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.20  E-value=0.0021  Score=62.01  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..++.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            899999999999999999987764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.19  E-value=0.0017  Score=63.32  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3899999999999999999988764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.19  E-value=0.0022  Score=69.00  Aligned_cols=41  Identities=29%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG-RKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-~~v~vISlDDF  270 (476)
                      +..+|+|.|++||||||+++.|...|...+ ..+..+-.|++
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            457999999999999999999999997543 34555666654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.19  E-value=0.0028  Score=58.30  Aligned_cols=38  Identities=16%  Similarity=0.146  Sum_probs=28.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH--HHH----cCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYL--FRV----TGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~l--L~~----~G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||+..|...  +..    .+..+..++.++
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            48999999999999999998874  321    134566666655

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.18  E-value=0.0035  Score=61.20  Aligned_cols=39  Identities=31%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|.|.|++|+||||+++.|...+...+..+..++.++|.
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            467899999999999999998887667788888887774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.18  E-value=0.0022  Score=61.21  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999987764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.17  E-value=0.0045  Score=58.50  Aligned_cols=32  Identities=25%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC-Ce
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGR-KS  262 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~-~v  262 (476)
                      ..+|.|.|+.||||||.++.|...|...|. .+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v   35 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM   35 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence            357889999999999999999999988887 44

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.17  E-value=0.0047  Score=59.17  Aligned_cols=40  Identities=28%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -.|.|.|++|+||||+|+.|...+...+..+..+.+..+-
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~   87 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   87 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence            4789999999999999999999886544456666666554

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.16  E-value=0.0023  Score=62.38  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            3899999999999999999987764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.13  E-value=0.0024  Score=62.33  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=26.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -++||.|++|||||||.+.|..++..   ..-.|..|+
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g   80 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDG   80 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECC
Confidence            38999999999999999999887642   333444444

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.12  E-value=0.0075  Score=58.31  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=35.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.|.+.|+.|+||||++-.+...+...|.+|.++.+|-
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            477999999999999999999988888899999999986

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.10  E-value=0.0026  Score=60.28  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFYl~  273 (476)
                      ++||.|++|||||||.+.|..++... |     -++..+.++..+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~   82 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP   82 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC
Confidence            89999999999999999998877532 1     13555666654443

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=96.09  E-value=0.0074  Score=60.66  Aligned_cols=41  Identities=32%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ....|+-++|..|+||||+|..|+..|.+.|.+|.+|.+|-
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   64 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP   64 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            34567778899999999999999999998999999999996

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.06  E-value=0.0057  Score=58.71  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc----------CCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT----------GRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~----------G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||+..|...+..-          +.+|..++..+
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~   78 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED   78 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence            489999999999999999998866531          23565666555

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.06  E-value=0.0027  Score=61.62  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3899999999999999999987764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.06  E-value=0.0045  Score=63.04  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=24.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      -+|+|.|++|||||||.+.|...+...
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            489999999999999999999988754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.06  E-value=0.0028  Score=61.51  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3899999999999999999987764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.05  E-value=0.0021  Score=64.17  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+|||.|++|||||||.+.|..++.
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCC
Confidence            3899999999999999999987764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.04  E-value=0.0034  Score=61.20  Aligned_cols=26  Identities=27%  Similarity=0.162  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      |.|||.|++|||||||.+.|..++..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999999988743

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.03  E-value=0.0035  Score=62.74  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -+|||.|++|||||||++.|..++
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc
Confidence            389999999999999999999988

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.03  E-value=0.0074  Score=57.87  Aligned_cols=43  Identities=28%  Similarity=0.440  Sum_probs=32.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC----CeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR----KSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~----~v~vISlDDFY  271 (476)
                      ..+.-|.|.|++|+||||+|+.+...+...+.    .+..++..++.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~  111 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV  111 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence            34456789999999999999999999876543    45556655553

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.02  E-value=0.0074  Score=56.21  Aligned_cols=39  Identities=26%  Similarity=0.154  Sum_probs=30.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .|.-|.|.|++|+||||+|+.|...+   +.....++..++.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~   76 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFV   76 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHH
Confidence            34557799999999999999998876   4566666666654

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.01  E-value=0.0064  Score=57.54  Aligned_cols=40  Identities=30%  Similarity=0.272  Sum_probs=34.2

Q ss_pred             CCcEEEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          229 LPWWYIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +.+.+|+| +|-.|+||||+|..|+..|. .|.+|.+|-+|-
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~   65 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT   65 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence            34667777 57788999999999999999 899999999994

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.00  E-value=0.0026  Score=60.21  Aligned_cols=24  Identities=33%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..++.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            799999999999999999987764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.00  E-value=0.0071  Score=56.89  Aligned_cols=37  Identities=35%  Similarity=0.167  Sum_probs=28.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |.-|.|.|++|+||||+|+.|...+   +..+..++..++
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~   81 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDF   81 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSS
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHH
Confidence            3348899999999999999999877   345555555554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.00  E-value=0.0019  Score=61.72  Aligned_cols=25  Identities=32%  Similarity=0.604  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999988775

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.00  E-value=0.003  Score=61.97  Aligned_cols=24  Identities=29%  Similarity=0.149  Sum_probs=22.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..++.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            899999999999999999987764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.98  E-value=0.0021  Score=65.03  Aligned_cols=34  Identities=35%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|+|++|||||||.+.|...+..   ..-.|++||
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie~  210 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEIPF---DQRLITIED  210 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC---CceEEEECC
Confidence            7999999999999999999877643   333455554

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=95.97  E-value=0.0081  Score=55.99  Aligned_cols=40  Identities=28%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             EEEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|+| ++..|+||||+|..|...|.+.|.+|.+|-.|-..
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   43 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL   43 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            46777 56788999999999999999899999999998643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.95  E-value=0.0034  Score=59.88  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFYl  272 (476)
                      -++||.|++|||||||.+.|..++... |     -++..+.++.++.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~   78 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ   78 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCC
Confidence            389999999999999999998877532 1     1355667776543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.95  E-value=0.0047  Score=64.20  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      -+|+|+|++|||||||.+.|..++.....++.++
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~  201 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  201 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence            4899999999999999999998886543344443

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=95.95  E-value=0.0086  Score=58.13  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             CcEEEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.+|+|+|+ .|+||||+|..|+..|.+.|.+|.+|-.|-
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~  121 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM  121 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4568888876 789999999999999998899999999984

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.93  E-value=0.003  Score=59.31  Aligned_cols=25  Identities=32%  Similarity=0.287  Sum_probs=22.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      ++||.|++|||||||.+.|..+ ...
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl-~p~   48 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ-ALQ   48 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CCc
Confidence            7999999999999999999988 643

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.92  E-value=0.0053  Score=65.64  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=33.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH-c-CCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV-T-GRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~-G~~v~vISlDD  269 (476)
                      .+++|-+.|.+||||||+|++|+..|.. . |..+..+-.|+
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            4589999999999999999999999975 4 35566777776

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=95.91  E-value=0.0077  Score=59.28  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=35.1

Q ss_pred             CcEEEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.+|+|+|+ .|+||||+|..|+..|.+.|.+|.+|-.|-
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~  143 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL  143 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4568888876 699999999999999998899999998885

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.89  E-value=0.0042  Score=53.95  Aligned_cols=25  Identities=20%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .|.|.|++|+||||+++.+...+..
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4579999999999999999988754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.87  E-value=0.0017  Score=61.85  Aligned_cols=28  Identities=21%  Similarity=0.158  Sum_probs=24.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +++.+|.|.|+.||||||+++.|+..|.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4678999999999999999999988773

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.86  E-value=0.0041  Score=59.71  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      ++||.|++|||||||.+.|..+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            8999999999999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.86  E-value=0.0072  Score=57.36  Aligned_cols=39  Identities=26%  Similarity=0.153  Sum_probs=30.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+.-|.|.|++|+||||+|+.|...+   +..+..++..++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~   88 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELV   88 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHH
Confidence            34458899999999999999998776   4566667666664

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.85  E-value=0.0078  Score=54.89  Aligned_cols=38  Identities=29%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ++++|.|.|.+|||||||+..|...+.. ..++.+|..|
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~-~~~~~~i~~d   74 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD-KYKIACIAGD   74 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTT-TCCEEEEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhcc-CCeEEEEECC
Confidence            4678999999999999999887766532 2456666644

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.85  E-value=0.0038  Score=63.89  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.||+|||||||.+.|..++.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            3899999999999999999998774

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.85  E-value=0.0079  Score=60.81  Aligned_cols=39  Identities=26%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -++.|.|++||||||||..+...+...|.+|..++++.-
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~  100 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA  100 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            489999999999999999988777666888888988763

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=95.84  E-value=0.0087  Score=59.33  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=36.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..|+-++|..|+||||+|..|+..|.+.|.+|.+|.+|-
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            467778899999999999999999998999999999996

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.84  E-value=0.0044  Score=63.64  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCC
Confidence            3899999999999999999987764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.81  E-value=0.0035  Score=60.56  Aligned_cols=24  Identities=25%  Similarity=0.420  Sum_probs=22.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..++.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            899999999999999999987764

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=95.79  E-value=0.012  Score=55.39  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             EEEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+|+| +|..|+||||+|..|...|.+.|.+|.+|-.|-.
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   42 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            35666 5788999999999999999988999999988853

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.79  E-value=0.0067  Score=59.96  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF  270 (476)
                      .-|.|.|++|+|||+||.+|...+. ..|.+|..++..+|
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l  192 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF  192 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence            3567899999999999999999887 77888777766543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.78  E-value=0.0059  Score=59.27  Aligned_cols=22  Identities=41%  Similarity=0.588  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      |+|.||+|||||||+++|...+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHc
Confidence            8999999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.78  E-value=0.0043  Score=61.46  Aligned_cols=34  Identities=29%  Similarity=0.123  Sum_probs=26.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      -.+++|+|++|||||||.+.|....  .|.++++|.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~   37 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIE   37 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEEC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEE
Confidence            3589999999999999999887654  345555553

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.77  E-value=0.0088  Score=61.07  Aligned_cols=39  Identities=23%  Similarity=0.156  Sum_probs=33.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .-++.|.|++|||||||+..+...+...|.+|..|+...
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            458999999999999999999988877777787777664

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.76  E-value=0.0048  Score=59.94  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++||.|++|||||||.+.|..++
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            389999999999999999998763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.74  E-value=0.0054  Score=57.04  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      |-|+||||||||||++.|...+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            4589999999999998876654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.74  E-value=0.0047  Score=61.99  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -.++|.|++|||||||++.|..++.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999998874

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.74  E-value=0.0065  Score=57.86  Aligned_cols=26  Identities=15%  Similarity=0.078  Sum_probs=24.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ...||+|+|+.||||||+++.|+..|
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            35799999999999999999999988

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=95.73  E-value=0.0091  Score=60.14  Aligned_cols=38  Identities=26%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +.|+-++|-.|+||||+|..|+..|...|.+|.+|.+|
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D   53 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD   53 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            45777999999999999999999998889999999999

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.71  E-value=0.006  Score=54.01  Aligned_cols=26  Identities=38%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTG  259 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G  259 (476)
                      |.|.|++|+||||+++.+...+...+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~~~   66 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFGEN   66 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhccc
Confidence            78999999999999999988875433

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=95.71  E-value=0.01  Score=59.07  Aligned_cols=40  Identities=25%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..|+-++|..|+||||+|..|+..|.+.|.+|.+|.+|--
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            3466678999999999999999999988999999999953

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.71  E-value=0.0053  Score=63.34  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.||+|||||||.+.|..++.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCC
Confidence            3899999999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.71  E-value=0.0048  Score=59.70  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            3899999999999999999987763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.70  E-value=0.017  Score=54.86  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE-ecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI-SIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI-SlDDF  270 (476)
                      ..+.-|-|.|++|+||||+|+.|...+   +.....+ +.|++
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~~  101 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKM  101 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHHh
Confidence            456678899999999999999999876   4444444 44444

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.69  E-value=0.01  Score=63.34  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.++.++|..|+||||+|..|...+.+.|.+|.+|++|=
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            3457789999999999999999999998899999999993

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.66  E-value=0.0056  Score=62.52  Aligned_cols=25  Identities=32%  Similarity=0.728  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.||+|||||||.+.|..++.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCC
Confidence            3899999999999999999998774

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=95.65  E-value=0.0092  Score=56.45  Aligned_cols=39  Identities=26%  Similarity=0.356  Sum_probs=34.4

Q ss_pred             cEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..+|+|. +-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus         6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   45 (257)
T 1wcv_1            6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP   45 (257)
T ss_dssp             CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4578886 67799999999999999998899999999995

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.64  E-value=0.0059  Score=62.44  Aligned_cols=25  Identities=24%  Similarity=0.668  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.||+|||||||.+.|..++.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            3899999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.62  E-value=0.006  Score=62.29  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=22.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +++|.|++|||||||.+.|..++.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            899999999999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.61  E-value=0.0061  Score=62.55  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.||+|||||||.+.|..++.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3899999999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.60  E-value=0.0061  Score=62.46  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..++.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            899999999999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.59  E-value=0.0071  Score=56.78  Aligned_cols=23  Identities=39%  Similarity=0.420  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |+|.|++|+|||||++.|...+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.59  E-value=0.0061  Score=60.41  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+-.++|.||+|+|||||++.|...+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34568999999999999999999887

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.57  E-value=0.006  Score=54.16  Aligned_cols=24  Identities=17%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.+|.|++||||||+.++|..+|.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            889999999999999999998874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.57  E-value=0.0032  Score=63.06  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|+|.|++|||||||.+.|..++.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            799999999999999999887764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.55  E-value=0.006  Score=58.87  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFY  271 (476)
                      ++||.|++|||||||.+.|..++... |     ..+..+.++..+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~   77 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS   77 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCcc
Confidence            89999999999999999998887532 2     245667776544

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.54  E-value=0.013  Score=54.10  Aligned_cols=37  Identities=32%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             EEEE-eCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGF-SAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGI-aG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|+| ++-.|+||||+|..|+..|.+.| +|.+|-+|-.
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q   39 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN   39 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence            4666 58889999999999999999889 9999999954

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.52  E-value=0.0055  Score=62.29  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.||+|||||||.+.|..++.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCC
Confidence            3899999999999999999987764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.49  E-value=0.015  Score=59.19  Aligned_cols=39  Identities=23%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..+|.|.|++|+||||||..+...+...|.+|..|+++.
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            348899999999999999888877766788898888854

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=95.48  E-value=0.0099  Score=57.13  Aligned_cols=38  Identities=26%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             EEEEe---CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFS---APQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIa---G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|+|+   +-.|+||||+|..|+..|.+.|.+|.+|-+|-.
T Consensus        36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q   76 (298)
T 2oze_A           36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ   76 (298)
T ss_dssp             CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            44444   589999999999999999988999999999964

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.45  E-value=0.013  Score=55.59  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.-|-|.|++|+||||+|+.|...+   +..+..+...++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~~   87 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT   87 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGGS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhcc
Confidence            3346689999999999999999887   4566667666554

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=95.45  E-value=0.014  Score=57.35  Aligned_cols=41  Identities=15%  Similarity=0.071  Sum_probs=34.4

Q ss_pred             CcEEEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+.+|+|.| ..|+||||+|..|+..|.+.|.+|.+|-.|--
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~  132 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR  132 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence            345677765 57999999999999999988999999999854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.0057  Score=64.30  Aligned_cols=26  Identities=19%  Similarity=0.033  Sum_probs=23.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      +|+|.|++|||||||++.|..++...
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~  165 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYALKF  165 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCccccc
Confidence            79999999999999999999887654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.42  E-value=0.014  Score=54.54  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=27.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      ..|.|-|+-||||||.++.|+..|.+ |.+|...
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~   35 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   35 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEe
Confidence            36889999999999999999999964 7666544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.41  E-value=0.045  Score=53.53  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=26.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEe
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATIS  266 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vIS  266 (476)
                      .|.|.|++|+||||+++.+...+... +..+..+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            78899999999999999999888654 34444444

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.38  E-value=0.0052  Score=62.47  Aligned_cols=25  Identities=32%  Similarity=0.320  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.||+|||||||.+.|..++.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3899999999999999999998764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.37  E-value=0.019  Score=52.93  Aligned_cols=40  Identities=18%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             cEEEEEe-CCCCCcHHHHHHHHHHHHHHc-CCCeEEEecccc
Q 044604          231 WWYIGFS-APQGCGKTTLAFALDYLFRVT-GRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDF  270 (476)
                      ..+|+|. +-.|+||||+|..|+..|.+. |.+|.+|-+|--
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            4567666 567999999999999999988 999999999844

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.37  E-value=0.011  Score=52.56  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      |.+|.|.|++|+||||+++.+...+..
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            347889999999999999999887753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.35  E-value=0.013  Score=56.12  Aligned_cols=38  Identities=29%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+.-|.|.|++|+||||+|+.|...+   +.....++..++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l   90 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASL   90 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHH
Confidence            34568899999999999999998876   334444554443

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.34  E-value=0.016  Score=58.81  Aligned_cols=38  Identities=24%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlD  268 (476)
                      ..||.++|-.|+||||+|..|+..+.  ..|.+|.+|.+|
T Consensus        18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D   57 (348)
T 3io3_A           18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD   57 (348)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            35788999999999999999999998  789999999999

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.34  E-value=0.012  Score=57.31  Aligned_cols=38  Identities=18%  Similarity=-0.025  Sum_probs=28.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc---CCCeEEEec
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT---GRKSATISI  267 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~---G~~v~vISl  267 (476)
                      .+..|.|.|++|+|||||++.+...+...   +..++.+..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            34578899999999999999999888654   344444443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.33  E-value=0.013  Score=57.11  Aligned_cols=26  Identities=42%  Similarity=0.521  Sum_probs=23.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+..|.|.|++|+||||+|+.|...+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHh
Confidence            45578899999999999999999876

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=95.32  E-value=0.021  Score=52.50  Aligned_cols=39  Identities=28%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             EEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+|+|. +..|+||||+|..|...|.+.|.+|.+|-.|--
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            366665 667999999999999999988999999988853

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=95.32  E-value=0.031  Score=56.34  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=35.8

Q ss_pred             CCcEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +++.+|+|. |-.|+||||+|..|+..|.+.|.+|.+|-.|
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            456788887 5889999999999999998889999999999

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.32  E-value=0.009  Score=56.99  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=28.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...|.|.|++||||||||..|...+    .  .+|+-|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g----~--~iIsdDs~~v   69 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG----H--RLIADDRVDV   69 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT----C--EEEESSEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC----C--eEEecchhhe
Confidence            3578899999999999998887553    2  6788886554

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.32  E-value=0.019  Score=52.60  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=28.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH-HHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDY-LFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~-lL~~~G~~v~vISlD  268 (476)
                      -++-|+|++|+||||||..+.. .....|.+|..++++
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            4788999999999999977654 344446778777776

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.31  E-value=0.013  Score=54.79  Aligned_cols=43  Identities=16%  Similarity=0.089  Sum_probs=30.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH-----HcC-CCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR-----VTG-RKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~-----~~G-~~v~vISlDDFYl  272 (476)
                      .+.++.|.|++|||||++|..+...+.     +.| ..+.+..+||+-.
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~   52 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI   52 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc
Confidence            467899999999999999966533321     335 5555667788754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.31  E-value=0.0082  Score=58.44  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ++||.|++|||||||.+.|..++
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999998776

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.31  E-value=0.005  Score=65.58  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+|+|+|++|||||||.+.|..++.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4699999999999999999887774

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.30  E-value=0.015  Score=61.46  Aligned_cols=37  Identities=16%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      -+++|.|++|||||||++.+...+...|.++..+...
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e  318 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYE  318 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            4899999999999999999998887667666555543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.29  E-value=0.01  Score=60.99  Aligned_cols=26  Identities=46%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+-+|+|.|++|||||||++.|...+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34589999999999999999999876

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.27  E-value=0.015  Score=55.16  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .++.||||+|-+||||+|+|..|...+..  ..+.++++=|
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~--~~~~vv~msD   47 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGA--DVCAVLRLSG   47 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCT--TTEEEECTHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCC--CCceEEEccH
Confidence            46789999999999999999999887632  1356666654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.26  E-value=0.01  Score=53.26  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=22.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      ...+.|+|.|++|||||||.+.|...
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            34689999999999999999887654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.23  E-value=0.011  Score=61.12  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFY  271 (476)
                      +.-+.|.|++|+|||||+++|...+...  +.++..++..+|.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            3357799999999999999999888655  6677777777763

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=95.21  E-value=0.02  Score=52.33  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=28.4

Q ss_pred             EEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          233 YIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       233 VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      +|+|+| ..|+||||+|..|...|.+.|.+|.++
T Consensus         3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~   36 (224)
T 1byi_A            3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            567776 479999999999999999889998775

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=95.21  E-value=0.011  Score=57.12  Aligned_cols=24  Identities=25%  Similarity=0.077  Sum_probs=21.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+|||+|+.||||||+|+.|...+
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~   25 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            589999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.19  E-value=0.011  Score=51.41  Aligned_cols=36  Identities=17%  Similarity=-0.022  Sum_probs=26.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |-|.|++|+|||++|+.|.......+...+ +.....
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~   62 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP   62 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence            569999999999999999877644444444 544443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.19  E-value=0.015  Score=51.02  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+++.|+|.|++|+|||||.+.|..
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4578999999999999999988753

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=95.17  E-value=0.023  Score=54.89  Aligned_cols=39  Identities=31%  Similarity=0.284  Sum_probs=34.1

Q ss_pred             cEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +.+|+|+ +-.|+||||+|..|...|.+.|.+|.+|-.|-
T Consensus         4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~   43 (286)
T 2xj4_A            4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL   43 (286)
T ss_dssp             CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            3477776 67899999999999999998899999999986

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.16  E-value=0.018  Score=56.83  Aligned_cols=37  Identities=16%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      -+|.|+|++|+||||||..+.......|.+|..+++.
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            4788999999999999988886665557778888877

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=95.13  E-value=0.018  Score=58.25  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~--~~G~~v~vISlDD  269 (476)
                      ..|+-++|-.|+||||+|..|+..|.  +.|.+|.+|.+|-
T Consensus        18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~   58 (354)
T 2woj_A           18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP   58 (354)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            35677889999999999999999998  8899999999996

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.10  E-value=0.019  Score=56.87  Aligned_cols=28  Identities=29%  Similarity=0.037  Sum_probs=23.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ...+|||.|+.|+|||||++.+...+..
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            3456666999999999999999887754

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=95.10  E-value=0.029  Score=53.19  Aligned_cols=40  Identities=23%  Similarity=0.269  Sum_probs=33.7

Q ss_pred             cEEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +.+|+|. |-.|+||||+|..|+..|.+.|.+|.+|-+|--
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~   58 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL   58 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4567765 677899999999999999988999999988843

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.05  E-value=0.011  Score=56.62  Aligned_cols=23  Identities=39%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |+|.|++|+|||||++.|...+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            88999999999999999998763

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.05  E-value=0.023  Score=58.89  Aligned_cols=39  Identities=23%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlDD  269 (476)
                      --+|.|+|++|+|||||+..+...+.. .|.+|..+++..
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            348999999999999999988877654 477898888764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.05  E-value=0.018  Score=56.01  Aligned_cols=29  Identities=17%  Similarity=-0.024  Sum_probs=24.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      .+..|.|.|++|+||||+++.+...+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~   71 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEAR   71 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            34568899999999999999999887543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.03  E-value=0.0096  Score=58.84  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccccccCHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDFYLTAEGQA  278 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDFYl~~~er~  278 (476)
                      -++||.|++|||||||.+.|..++... |     -++..+.++..+.+...++
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~e  117 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKE  117 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHH
Confidence            389999999999999999998877532 2     1455666765544433333

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.02  E-value=0.01  Score=63.60  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccC
Confidence            3899999999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.01  E-value=0.011  Score=63.20  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            38999999999999999999888753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.97  E-value=0.015  Score=54.86  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=29.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |-|.|++|+|||++|+.|...+...+..++.|...++
T Consensus        32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            5689999999999999999877544455666766655

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.95  E-value=0.015  Score=58.66  Aligned_cols=26  Identities=27%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +--+++|.|++|||||||+..|....
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34599999999999999999998876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.95  E-value=0.022  Score=55.94  Aligned_cols=29  Identities=17%  Similarity=-0.003  Sum_probs=24.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      .|..|.|.|++|+||||+++.+...+...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~   72 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEV   72 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            34578899999999999999999887554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.021  Score=50.37  Aligned_cols=25  Identities=32%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+.|+|.|++|||||||...|..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999987753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.88  E-value=0.017  Score=51.83  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      .+.|+|.|++|||||||.+.|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            578999999999999999887653

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.88  E-value=0.025  Score=57.67  Aligned_cols=39  Identities=28%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -+|-|.|++|+||||||..+...+...|.+|..|+++.-
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s  113 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA  113 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            478889999999999998888777666788999998863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.87  E-value=0.02  Score=61.03  Aligned_cols=39  Identities=28%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++.+|+|.||+|+||||||+.|...+.   .....|+++++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~~~  145 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGGVR  145 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEecccc
Confidence            345899999999999999999999983   455566666543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.80  E-value=0.012  Score=60.66  Aligned_cols=25  Identities=32%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+++|.||+|||||||.+.|..++.
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3899999999999999999987764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.80  E-value=0.026  Score=51.60  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=25.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .++.|.|+.||||||++..+...+...|.++.++
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4788999999999999965555554557776665

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.79  E-value=0.025  Score=57.36  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=31.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      -+|.|+|++|+|||||+..+...+...|.+|..+|+.
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3788999999999999988887776678889888886

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.78  E-value=0.035  Score=53.00  Aligned_cols=35  Identities=17%  Similarity=0.062  Sum_probs=29.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      -.++-|.|+.|+||||++..+...+...|.+|.++
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            36888999999999999988777777778888877

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.76  E-value=0.021  Score=48.51  Aligned_cols=24  Identities=8%  Similarity=-0.085  Sum_probs=20.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|||||||...|.
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~   26 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHH
Confidence            356789999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.75  E-value=0.02  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.307  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.|+|.|++|+|||||.+.|.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~   24 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999998875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.71  E-value=0.025  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++-|+|.|.+|+|||||...|.
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~   27 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFA   27 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHH
Confidence            467889999999999999998765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.71  E-value=0.017  Score=61.27  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=23.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            58999999999999999999998854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.70  E-value=0.01  Score=53.27  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ....|+|.|++|||||||.+.|..
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999987764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.034  Score=58.10  Aligned_cols=40  Identities=23%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.=|.+.||+|+|||++|++|+..+   |.....|+..++.
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~  243 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV  243 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence            456668899999999999999999887   4566666666554

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.63  E-value=0.022  Score=59.50  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=26.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ++||.|++|||||||.+.|...+.   ..+.+|..++
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G  192 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIG  192 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEec
Confidence            799999999999999998888763   3344444444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.58  E-value=0.05  Score=57.38  Aligned_cols=37  Identities=14%  Similarity=0.248  Sum_probs=27.1

Q ss_pred             EEEEEeCCCCCcHHHHHHH--HHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFA--LDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~--L~~lL~~~G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||++.  +..++.. +-.++.|+..+
T Consensus        40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~   78 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEE   78 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence            4899999999999999998  4556542 44455565444

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.57  E-value=0.02  Score=54.30  Aligned_cols=27  Identities=22%  Similarity=-0.005  Sum_probs=24.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ..+|.|.|+.||||||+++.|...|..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468899999999999999999999853

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.57  E-value=0.022  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||...|.
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~   27 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            456889999999999999987765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.56  E-value=0.011  Score=63.51  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcC
Confidence            4899999999999999999887764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.55  E-value=0.021  Score=56.39  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc------CCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT------GRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~------G~~v~vISlDDF  270 (476)
                      -++.|.|++||||||||..+.......      |.+|..|++++-
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            489999999999999998887654322      457788888774

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.55  E-value=0.035  Score=55.93  Aligned_cols=35  Identities=23%  Similarity=0.115  Sum_probs=28.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      -+.|.|++||||||+++.|...+...|.++.++--
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            46799999999999999988777667777766643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.54  E-value=0.0097  Score=63.71  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            3899999999999999998887764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.54  E-value=0.027  Score=47.58  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|.+|+|||||...+.
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~   24 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999987665

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.53  E-value=0.029  Score=47.39  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|.+|+|||||...|.
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~   25 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999987765

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.48  E-value=0.017  Score=53.76  Aligned_cols=32  Identities=22%  Similarity=0.035  Sum_probs=23.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +|-|.|++||||||+|..|...    |.++.-|.+.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~   32 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence            3789999999999999987643    4455445443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.47  E-value=0.016  Score=57.13  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.+.||+|+||||+++.+...+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            78999999999999999998875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.47  E-value=0.029  Score=56.15  Aligned_cols=39  Identities=26%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+.-|.|.|++|+||||+|++|...+   +..+..++..++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~  154 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLT  154 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhh
Confidence            45568899999999999999998776   4556666666554

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=94.47  E-value=0.047  Score=55.12  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=34.9

Q ss_pred             CCcEEEEEe-CCCCCcHHHHHHHHHHHHHH------cCCCeEEEeccc
Q 044604          229 LPWWYIGFS-APQGCGKTTLAFALDYLFRV------TGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGIa-G~sGSGKTTLA~~L~~lL~~------~G~~v~vISlDD  269 (476)
                      ..+.+|+|. |--|+||||+|..|+..|..      .|.+|.+|-+|-
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~  153 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP  153 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence            456778777 77889999999999999974      589999999994

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.46  E-value=0.019  Score=48.71  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++-|+|.|.+|+|||||...|.
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~   27 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHH
Confidence            356889999999999999987765

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.46  E-value=0.056  Score=50.21  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=30.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      -.++.|.|+.||||||.+..+...+...|.+|.++.
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            368999999999999999777777766789998884

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.45  E-value=0.012  Score=55.53  Aligned_cols=23  Identities=35%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |.|.|++|+||||+|+.|...+.
T Consensus        47 vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            66999999999999999998773

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.45  E-value=0.026  Score=57.07  Aligned_cols=24  Identities=33%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..++.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            799999999999999999888864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.44  E-value=0.012  Score=63.17  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcc
Confidence            3899999999999999999887764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.43  E-value=0.028  Score=48.39  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=20.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|++|||||||...|.
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~   29 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYV   29 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999999997765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.42  E-value=0.025  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ++-|+|.|.+|+|||||...|.
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~   24 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999987765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.41  E-value=0.029  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.023  Sum_probs=20.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++.|+|.|.+|+|||||...|.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~   29 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIR   29 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999998764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.37  E-value=0.03  Score=48.06  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .++-|+|.|.+|+|||||.+.|.
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~   25 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFA   25 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEEECCCCccHHHHHHHHh
Confidence            46789999999999999998765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.37  E-value=0.031  Score=54.88  Aligned_cols=37  Identities=30%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .+.-|.|.|++|+|||++|++|...+   +..+..++..+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~   86 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD   86 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH
Confidence            45568899999999999999998876   34455555443

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.33  E-value=0.03  Score=56.00  Aligned_cols=42  Identities=19%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV------TGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~------~G~~v~vISlDDFY  271 (476)
                      +.-++.|.|++||||||||..+......      .|.+|..|++++-+
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~  168 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTF  168 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence            4568999999999999999888765321      24577778887743

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.32  E-value=0.046  Score=57.33  Aligned_cols=40  Identities=25%  Similarity=0.174  Sum_probs=32.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.=|-+.||+|+|||+||++|+..+   |.....|+..++.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~  252 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV  252 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc
Confidence            456678899999999999999999887   4566667766664

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.32  E-value=0.032  Score=48.02  Aligned_cols=25  Identities=16%  Similarity=0.108  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+++-|+|.|.+|+|||||.+.|..
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4568899999999999999877653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.30  E-value=0.035  Score=54.85  Aligned_cols=41  Identities=32%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.-|.|.||+|+|||++|+++...+.  +.....++..++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~   83 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV   83 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH
Confidence            3456788999999999999999998762  3345555555443

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=94.30  E-value=0.21  Score=48.35  Aligned_cols=34  Identities=26%  Similarity=0.239  Sum_probs=28.1

Q ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSA-PQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG-~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      ..|-|+| .+|+||||++..|.+.|++.|.+|..+
T Consensus        27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f   61 (251)
T 3fgn_A           27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC   61 (251)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            3455666 469999999999999999999988765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.26  E-value=0.024  Score=55.30  Aligned_cols=25  Identities=28%  Similarity=0.218  Sum_probs=21.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .|. +.|.|++|+||||+++.|...+
T Consensus        36 ~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           36 LPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            345 8899999999999999999854

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.25  E-value=0.036  Score=48.21  Aligned_cols=25  Identities=12%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ..++-|+|.|.+|+|||||...|..
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3568899999999999999987654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.24  E-value=0.053  Score=56.79  Aligned_cols=40  Identities=20%  Similarity=0.028  Sum_probs=31.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.=|-+-||+|+|||++|++|+..+   |.....++..++.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~  252 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV  252 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh
Confidence            456678899999999999999999887   4566666666654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.20  E-value=0.028  Score=47.82  Aligned_cols=23  Identities=13%  Similarity=0.240  Sum_probs=20.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +.+-|+|.|.+|+|||||.+.|.
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~   27 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFV   27 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHH
Confidence            46789999999999999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.18  E-value=0.027  Score=58.17  Aligned_cols=38  Identities=16%  Similarity=0.134  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH------cCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV------TGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~------~G~~v~vISlDD  269 (476)
                      -+++|.|++|||||||+..|......      .+.+++.|+..+
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            48999999999999999976533211      123466666665

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.17  E-value=0.035  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ++-|+|.|.+|+|||||.+.|.
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~   24 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            5779999999999999987765

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=94.14  E-value=0.036  Score=55.79  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=32.7

Q ss_pred             EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|. +-.|+||||+|..|+..|.+.|.+|.+|-+|-
T Consensus         3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~   40 (361)
T 3pg5_A            3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP   40 (361)
T ss_dssp             EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            56665 78899999999999999998999999999983

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.10  E-value=0.048  Score=56.32  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=31.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV-TGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~-~G~~v~vISlD  268 (476)
                      --+|.|+|++|+||||||..+...... .|.+|..+++.
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            348889999999999999888876654 47789888886

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.09  E-value=0.026  Score=58.74  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=23.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+.+|||.|++|||||||.+.|..++.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456999999999999999999987654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.07  E-value=0.036  Score=55.14  Aligned_cols=36  Identities=28%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+.-|.+.||+|+||||+|+.|...+   +.....+..-
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~   85 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT   85 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence            34467789999999999999999887   3445445443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.05  E-value=0.033  Score=48.40  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|.+|+|||||...|.
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~   25 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLI   25 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            46889999999999999998775

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.03  E-value=0.036  Score=48.15  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ..++-|+|.|.+|+|||||...|..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4568899999999999999887653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.03  E-value=0.039  Score=47.11  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++-|+|.|.+|+|||||...|.
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~   28 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQ   28 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            346789999999999999988774

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.02  E-value=0.027  Score=55.43  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+++|.|++|||||||.+.|. ++
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            489999999999999999988 54

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.00  E-value=0.041  Score=57.33  Aligned_cols=39  Identities=15%  Similarity=0.091  Sum_probs=32.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      --+|.|+|++|+||||||..+.......|.+|..+|+..
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm  235 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM  235 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            347889999999999999888766655588898888873

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.98  E-value=0.025  Score=60.52  Aligned_cols=26  Identities=38%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            38999999999999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.97  E-value=0.038  Score=46.95  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+-|+|.|.+|+|||||...|.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~   24 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFV   24 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5779999999999999998765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.95  E-value=0.027  Score=60.13  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999988764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.94  E-value=0.0064  Score=58.23  Aligned_cols=25  Identities=24%  Similarity=0.186  Sum_probs=22.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +++|.||+|||||||.++|..++..
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~   53 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIP   53 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccccc
Confidence            6789999999999999999988853

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=93.93  E-value=0.044  Score=54.63  Aligned_cols=35  Identities=26%  Similarity=0.205  Sum_probs=26.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .-|-|.|++|+||||+|+.|...+   +..+..+....
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~  107 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS  107 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence            346799999999999999999887   44555554433

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.92  E-value=0.035  Score=48.77  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+++-|+|.|.+|+|||||...|..
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHc
Confidence            4568999999999999999987753

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=93.92  E-value=0.032  Score=57.61  Aligned_cols=32  Identities=25%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTG  259 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G  259 (476)
                      ..+.+.|.|-|+-||||||+++.|+..|+..|
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g   77 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD   77 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            34678899999999999999999999987654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=93.91  E-value=0.034  Score=53.43  Aligned_cols=37  Identities=27%  Similarity=0.199  Sum_probs=28.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.|.|++|+||||+|+.+...+   +..+..+....+-
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~   75 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIE   75 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccC
Confidence            457789999999999999998877   3455556655553

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.88  E-value=0.035  Score=47.78  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            456889999999999999987764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.84  E-value=0.24  Score=49.69  Aligned_cols=43  Identities=14%  Similarity=-0.028  Sum_probs=33.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-----CCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG-----RKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G-----~~v~vISlDDFYl  272 (476)
                      .|..|-|.|++|+|||++++.+...|....     +.+..+++++.-.
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~   91 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL   91 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence            466788999999999999999999886531     2466777776654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=93.84  E-value=0.06  Score=53.93  Aligned_cols=37  Identities=27%  Similarity=0.179  Sum_probs=27.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +.-|.|.|++|+||||+|++|...+   +.....++..++
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l  120 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL  120 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence            3457788999999999999999887   344444544433

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.83  E-value=0.043  Score=47.43  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=20.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...|.
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHh
Confidence            456889999999999999987765

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=93.82  E-value=0.058  Score=58.05  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      -++.|.|++|+||||++..|...+...|.+|.++.
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            36779999999999999999999888888877664

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.82  E-value=0.078  Score=55.76  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=27.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +..|.|.|++|+||||+|+.|...+   |..+..+...++
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~  113 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDV  113 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCc
Confidence            4467899999999999999998887   445554544443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.80  E-value=0.05  Score=52.92  Aligned_cols=36  Identities=36%  Similarity=0.367  Sum_probs=27.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..|.|.|++|+||||+|+.|...+   +.....++...+
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~   91 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMI   91 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhc
Confidence            347899999999999999997775   445555555444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.79  E-value=0.03  Score=59.76  Aligned_cols=39  Identities=31%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDDF  270 (476)
                      -++||.|++|||||||.+.|..++... |     .++..+.+|-.
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~  357 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIK  357 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCc
Confidence            389999999999999999999877532 2     24556666643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.78  E-value=0.037  Score=47.65  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+-|+|.|.+|+|||||...|.
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~   28 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999988765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.77  E-value=0.032  Score=49.34  Aligned_cols=22  Identities=32%  Similarity=0.247  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      +-|+|.|++|+|||||.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999988765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.75  E-value=0.039  Score=46.84  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=19.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ++-|+|.|++|+|||||...|.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~   24 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4679999999999999987764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.72  E-value=0.044  Score=48.37  Aligned_cols=26  Identities=23%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ....+-|+|.|.+|+|||||...|..
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhc
Confidence            34578899999999999999877653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.71  E-value=0.034  Score=47.75  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...|.
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999988765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=93.71  E-value=0.041  Score=51.15  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||...|.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHc
Confidence            457899999999999999998765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.67  E-value=0.043  Score=46.69  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ++-|+|.|++|+|||||...|.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~   24 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHH
Confidence            5779999999999999988765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.64  E-value=0.061  Score=59.06  Aligned_cols=44  Identities=25%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             CCcE-EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWW-YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~-VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|. .|.+.|++|+|||++|+.|...+...+..++.|.+-.|.-
T Consensus       518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME  562 (758)
T ss_dssp             TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence            4454 6889999999999999999998855456777777777663

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.61  E-value=0.038  Score=48.63  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=20.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ....|+|.|.+|+|||||.+.|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            346799999999999999988764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.61  E-value=0.043  Score=51.46  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .-|.|.|+||+||||+|..|..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3588999999999999987765

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.60  E-value=0.062  Score=56.93  Aligned_cols=40  Identities=23%  Similarity=0.071  Sum_probs=31.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.=|-+.||+|+|||+||++|+..+   |.....++..++.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~  280 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELV  280 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhh
Confidence            456678899999999999999999887   4456666666654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.59  E-value=0.045  Score=47.30  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||...|.
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~   33 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFV   33 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHH
Confidence            456889999999999999987764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.57  E-value=0.085  Score=55.47  Aligned_cols=40  Identities=23%  Similarity=0.085  Sum_probs=31.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.=|-+.||+|+|||++|++|+..+   |.....|+..++.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~  253 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI  253 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh
Confidence            446668899999999999999999887   4456666666654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.56  E-value=0.055  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|||||||...|.
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~   35 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFM   35 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999987765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.54  E-value=0.035  Score=60.37  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=27.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-CC-----CeEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-GR-----KSATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G~-----~v~vISlD  268 (476)
                      ++||.|++|||||||.+.|..++... |.     .+..+.++
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~  421 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK  421 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccc
Confidence            69999999999999999999887543 32     34555555

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.54  E-value=0.035  Score=54.42  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -+++|.|++|||||||.+.|..++
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            389999999999999999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.52  E-value=0.056  Score=47.02  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...|.
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999999987765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.50  E-value=0.052  Score=45.82  Aligned_cols=21  Identities=19%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -|+|.|.+|+|||||...|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999987763

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=93.46  E-value=0.052  Score=54.98  Aligned_cols=41  Identities=20%  Similarity=0.139  Sum_probs=27.2

Q ss_pred             CCcEEEEEe-CCCCCcHHHHHHHHHHHHH------HcCCCeEEEeccc
Q 044604          229 LPWWYIGFS-APQGCGKTTLAFALDYLFR------VTGRKSATISIDD  269 (476)
Q Consensus       229 ~~P~VIGIa-G~sGSGKTTLA~~L~~lL~------~~G~~v~vISlDD  269 (476)
                      ..+.+|+|. |--|+||||+|..|+..|.      ..|.+|.+|-+|-
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~  156 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP  156 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence            456677777 7889999999999999997      5689999999983

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.45  E-value=0.032  Score=48.48  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++-|+|.|++|+|||||...|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            457889999999999999987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.44  E-value=0.053  Score=46.80  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||...|.
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~   31 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFK   31 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            457889999999999999987764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.43  E-value=0.048  Score=49.19  Aligned_cols=25  Identities=32%  Similarity=0.181  Sum_probs=21.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|.|.|++|+|||||...|..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3466799999999999999987764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.43  E-value=0.031  Score=58.55  Aligned_cols=23  Identities=30%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      +-|||.|++|||||||.+.|...
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCc
Confidence            34999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.41  E-value=0.045  Score=48.34  Aligned_cols=24  Identities=29%  Similarity=0.064  Sum_probs=20.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|++|+|||||...|.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHh
Confidence            456889999999999999988765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.40  E-value=0.075  Score=56.18  Aligned_cols=38  Identities=34%  Similarity=0.145  Sum_probs=29.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.=|.|.||+|+||||+|++|...+   +.....++..+|.
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~   86 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV   86 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH
Confidence            3347799999999999999999876   4566667666664

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.39  E-value=0.056  Score=47.98  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=20.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~   29 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYV   29 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            457889999999999999987764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.36  E-value=0.055  Score=46.42  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|+|.|.+|+|||||...|..
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc
Confidence            4468899999999999999987653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.35  E-value=0.055  Score=46.82  Aligned_cols=23  Identities=17%  Similarity=0.046  Sum_probs=20.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +.+-|+|.|.+|+|||||...|.
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~   26 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYT   26 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999997764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.34  E-value=0.042  Score=56.20  Aligned_cols=23  Identities=35%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +++|.|++|||||||.+.|...+
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            89999999999999998887544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.32  E-value=0.079  Score=50.77  Aligned_cols=35  Identities=9%  Similarity=-0.026  Sum_probs=27.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|.|.|+.|+|||||++.+...+.   ..+..+...++
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~~   66 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRKF   66 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchhh
Confidence            788999999999999998887663   34566666654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.29  E-value=0.065  Score=47.29  Aligned_cols=25  Identities=20%  Similarity=-0.004  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +-+.+|.|+.||||||+..+|...|
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4478999999999999999998776

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.041  Score=59.85  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            48999999999999999999987754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.26  E-value=0.053  Score=47.72  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|+|.|.+|+|||||.+.|..
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhc
Confidence            4578899999999999999987653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.25  E-value=0.052  Score=52.61  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.|.|++|+||||+++.|...+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.24  E-value=0.042  Score=59.69  Aligned_cols=37  Identities=32%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-C-----CCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-G-----RKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G-----~~v~vISlDD  269 (476)
                      ++||.|++|||||||.+.|..++... |     .++..+.+|-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~  426 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYI  426 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCc
Confidence            79999999999999999999877532 2     2455666664

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.22  E-value=0.064  Score=57.02  Aligned_cols=35  Identities=37%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.|.|++|+|||||+++|...+.   .....++.-+|.
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~  101 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  101 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence            88999999999999999998763   455556655554

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.21  E-value=0.044  Score=48.19  Aligned_cols=24  Identities=17%  Similarity=0.080  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||...|.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999998775

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=93.20  E-value=0.063  Score=47.30  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=20.5

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+++-|+|.|.+|+|||||...|.
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~   41 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFC   41 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHH
Confidence            3567899999999999999987764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=93.20  E-value=0.062  Score=47.54  Aligned_cols=25  Identities=16%  Similarity=0.127  Sum_probs=21.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ....+-|+|.|.+|+|||||...|.
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~   42 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFT   42 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHH
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHh
Confidence            3557889999999999999987765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.20  E-value=0.072  Score=47.39  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=21.8

Q ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          227 IYLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       227 ~~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+.+-|+|.|.+|+|||||...+.
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~   41 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYL   41 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHh
Confidence            34567899999999999999997654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.17  E-value=0.073  Score=55.03  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |.-|-+.||+|+|||++|+.|+..+.
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            34577899999999999999999884

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=93.16  E-value=0.066  Score=53.88  Aligned_cols=38  Identities=26%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.-|.|.|++|+|||++|+.|...+   +..+..++..++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~  185 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLT  185 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhh
Confidence            4567899999999999999997765   4455555555443

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=93.15  E-value=0.041  Score=55.71  Aligned_cols=30  Identities=27%  Similarity=0.206  Sum_probs=23.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTG  259 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G  259 (476)
                      +.+.|.|-|+-||||||+++.|++.|+..|
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g   32 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD   32 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            357899999999999999999999987654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.12  E-value=0.047  Score=53.54  Aligned_cols=25  Identities=20%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ..|-|.|++|+||||+|+.+...+.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5677999999999999999999885

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.11  E-value=0.063  Score=47.12  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||...|.
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~   37 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFA   37 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHH
Confidence            456789999999999999987765

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=93.10  E-value=0.095  Score=54.17  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCC-CeEEE
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGR-KSATI  265 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~-~v~vI  265 (476)
                      .+.|.|+.|+||||++..+...|...|. .+.++
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~   80 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA   80 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            6789999999999999998888877666 45444

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.08  E-value=0.066  Score=47.10  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|+|.|.+|+|||||...|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3467899999999999999987754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.06  E-value=0.063  Score=60.02  Aligned_cols=43  Identities=26%  Similarity=0.213  Sum_probs=32.5

Q ss_pred             CCc-EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPW-WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P-~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+| -.|.|.|++|+|||++|+.|...+...+...+.|.+..|.
T Consensus       585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~  628 (854)
T 1qvr_A          585 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM  628 (854)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence            344 3788999999999999999999885444456666665554

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.05  E-value=0.048  Score=51.93  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.|.|++|+||||+|+.+...+.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            78999999999999999988774

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.03  E-value=0.044  Score=59.48  Aligned_cols=26  Identities=31%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      -++||.|++|||||||.+.|..++..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~p  143 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLIP  143 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCC
Confidence            48999999999999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=93.03  E-value=0.061  Score=47.02  Aligned_cols=24  Identities=17%  Similarity=0.062  Sum_probs=20.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++-|+|.|.+|+|||||...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~   39 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFN   39 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHh
Confidence            356889999999999999987765

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=93.03  E-value=0.06  Score=56.22  Aligned_cols=39  Identities=13%  Similarity=0.109  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDD  269 (476)
                      --++.|+|++|+||||||..+...+... |.+|..+++..
T Consensus       242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~  281 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE  281 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred             CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence            3478899999999999998887766554 77898888865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.00  E-value=0.061  Score=46.49  Aligned_cols=24  Identities=17%  Similarity=0.073  Sum_probs=19.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...+.
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~   29 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYT   29 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            346789999999999999987665

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=93.00  E-value=0.066  Score=51.85  Aligned_cols=26  Identities=38%  Similarity=0.156  Sum_probs=22.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .|.++-+.|++|+||||+++.+...+
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            45578899999999999999998776

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.98  E-value=0.086  Score=54.89  Aligned_cols=40  Identities=25%  Similarity=0.102  Sum_probs=30.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.=|-+.||+|+|||++|++|+..+   |.....|+..++.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~  219 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV  219 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh
Confidence            345567899999999999999999887   4456666665554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.95  E-value=0.054  Score=47.11  Aligned_cols=24  Identities=17%  Similarity=0.070  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~   31 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFI   31 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHH
Confidence            346889999999999999998765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.95  E-value=0.021  Score=67.10  Aligned_cols=67  Identities=19%  Similarity=0.346  Sum_probs=42.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHHHHHHHHcccCCcccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEGQAKLREANRGNALLEFR  293 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~er~~la~~~p~npLl~~r  293 (476)
                      .|||.|++|||||||++.|.+++... |                  .++.+|++|-|.....-++.+.           .
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~-----------~ 1175 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII-----------Y 1175 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHS-----------S
T ss_pred             EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHh-----------c
Confidence            69999999999999999998776432 1                  1355666666665544333321           1


Q ss_pred             C-CCCCccHHHHHHHHHH
Q 044604          294 G-NAGSHDLQLSVETLTA  310 (476)
Q Consensus       294 G-~P~t~D~~lL~e~L~~  310 (476)
                      | .|..++-+.+.+.++.
T Consensus      1176 gld~~~~sd~ei~~Al~~ 1193 (1321)
T 4f4c_A         1176 GLDPSSVTMAQVEEAARL 1193 (1321)
T ss_dssp             SSCTTTSCHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHH
Confidence            2 2455666666665544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.95  E-value=0.065  Score=45.73  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|+|.|.+|+|||||...|.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568999999999999998774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.94  E-value=0.068  Score=47.71  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=20.0

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ....+-|+|.|.+|+|||||...|.
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHH
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHH
Confidence            3567899999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.94  E-value=0.054  Score=47.24  Aligned_cols=23  Identities=26%  Similarity=0.172  Sum_probs=19.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+.|+|.|.+|+|||||...|.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALF   44 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.93  E-value=0.061  Score=57.53  Aligned_cols=29  Identities=24%  Similarity=0.103  Sum_probs=24.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .+--++||.|++|||||||.+.|..++..
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            34469999999999999999999887643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=92.90  E-value=0.044  Score=64.24  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|||.|++|||||||++.|..++.
T Consensus      1061 ~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1061 TLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             EEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCcC
Confidence            799999999999999999987764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=92.87  E-value=0.048  Score=58.56  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .++|.|++|+||||||+.|..++..
T Consensus        62 ~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           62 HVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             EEEEEeCCCCCHHHHHHHHhccCCc
Confidence            6889999999999999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.86  E-value=0.072  Score=46.90  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~   43 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYA   43 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHH
Confidence            446889999999999999997764

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=92.85  E-value=0.06  Score=52.84  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=28.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -|-|.|++|+|||++|+.|.......+...+.+.+..+
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            35689999999999999999876544445556655544

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.83  E-value=0.055  Score=51.66  Aligned_cols=23  Identities=26%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+.|+|.|++|||||||.+.|..
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999988854

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=92.83  E-value=0.06  Score=50.57  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=20.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++.|+|.|.+|+|||||...|.
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~   43 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSIL   43 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHh
Confidence            456889999999999999998765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=92.83  E-value=0.048  Score=52.22  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|.|.||+|+||||+|..|+..+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998874

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=92.78  E-value=0.045  Score=52.19  Aligned_cols=23  Identities=43%  Similarity=0.570  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.|.|++|+||||+|+.+...+.
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            78999999999999999998874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.77  E-value=0.062  Score=48.33  Aligned_cols=25  Identities=24%  Similarity=0.040  Sum_probs=19.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+.+.|+|.|.+|+|||||...|..
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999987753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.77  E-value=0.052  Score=47.15  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|.+|+|||||...|.
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHH
Confidence            46789999999999999987765

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=92.76  E-value=0.13  Score=54.69  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=34.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..++-++|..|+||||+|..|...|.+.|.+|.+|.+|-
T Consensus       327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp  365 (589)
T 1ihu_A          327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP  365 (589)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence            356677899999999999999999988899999999993

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.74  E-value=0.08  Score=47.00  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+.+-|+|.|.+|+|||||...|..
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999877653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=92.74  E-value=0.072  Score=46.86  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=20.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +..++-|+|.|.+|+|||||...|.
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHh
Confidence            4567789999999999999987764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=92.73  E-value=0.058  Score=48.57  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999988763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.72  E-value=0.073  Score=47.07  Aligned_cols=24  Identities=21%  Similarity=0.079  Sum_probs=21.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ++.+-|+|.|.+|+|||||...|.
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~   43 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999988775

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.70  E-value=0.056  Score=46.01  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|+|.|.+|+|||||.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            568999999999999987763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.70  E-value=0.072  Score=46.84  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +.+-|+|.|.+|+|||||...|.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            46789999999999999998765

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=92.68  E-value=0.055  Score=54.85  Aligned_cols=28  Identities=18%  Similarity=0.031  Sum_probs=25.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +++.|.|.|+-||||||+++.|+..|..
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4689999999999999999999999865

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=92.66  E-value=0.072  Score=55.11  Aligned_cols=39  Identities=33%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .|.-|.|.||+|+|||++|++|...+.  +..+..++..++
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l  204 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL  204 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHH
Confidence            345678999999999999999998762  334445555544

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=92.64  E-value=0.093  Score=54.92  Aligned_cols=36  Identities=22%  Similarity=0.126  Sum_probs=28.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCC--eEEEecc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRK--SATISID  268 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~--v~vISlD  268 (476)
                      .++|.|++|+|||||+..|...+.+.+..  |+++-+|
T Consensus       176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG  213 (422)
T 3ice_A          176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID  213 (422)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred             EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence            69999999999999999999888765443  3444444

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.61  E-value=0.059  Score=48.08  Aligned_cols=23  Identities=30%  Similarity=0.249  Sum_probs=18.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|.+|+|||||.+.+.
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999988765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.61  E-value=0.06  Score=48.47  Aligned_cols=23  Identities=30%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|++|+|||||.+.+.
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999988764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=92.61  E-value=0.078  Score=51.73  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +..+.|.|+.|+||||+++.+...+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34678999999999999999988874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.60  E-value=0.066  Score=47.52  Aligned_cols=24  Identities=13%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...|.
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~   44 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFV   44 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHh
Confidence            457889999999999999987765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.60  E-value=0.085  Score=46.80  Aligned_cols=25  Identities=16%  Similarity=0.105  Sum_probs=20.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ....+-|+|.|.+|+|||||...+.
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~   42 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFL   42 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHH
Confidence            3456889999999999999987665

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.53  E-value=0.047  Score=64.21  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|||.|++|||||||++.|...+.
T Consensus       446 ~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          446 TVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             EEEEEecCCCcHHHHHHHhccccc
Confidence            799999999999999998877654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=92.53  E-value=0.044  Score=59.32  Aligned_cols=24  Identities=25%  Similarity=0.187  Sum_probs=21.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|||.|++|||||||.+.|..++.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred             eEEEECCCCChHHHHHHHHhCCCC
Confidence            399999999999999999998763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.52  E-value=0.081  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.249  Sum_probs=19.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+-|+|.|.+|+|||||...|.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~   29 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYA   29 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999987764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.51  E-value=0.073  Score=45.17  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -|+|.|.+|+|||||...+..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999987753

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=92.50  E-value=0.084  Score=54.12  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      .|+.++|..|+||||+|..|+..+...|.+|.+|.+
T Consensus         3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~   38 (374)
T 3igf_A            3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL   38 (374)
T ss_dssp             EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence            477789999999999999999999888999988876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=92.50  E-value=0.098  Score=54.98  Aligned_cols=37  Identities=27%  Similarity=0.243  Sum_probs=27.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |.-|.+.|++|+||||+|+.|+..+   +.....+....|
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~~~~   86 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF   86 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecchhh
Confidence            3457799999999999999999887   344444444333

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=92.47  E-value=0.046  Score=64.08  Aligned_cols=25  Identities=24%  Similarity=0.499  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3899999999999999999887664

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.47  E-value=0.077  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=20.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...|.
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~   45 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFV   45 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHH
Confidence            457889999999999999988765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=92.47  E-value=0.052  Score=53.39  Aligned_cols=24  Identities=25%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -.+-|+|.|++|+|||||.+.|..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            357889999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.40  E-value=0.068  Score=55.57  Aligned_cols=26  Identities=23%  Similarity=0.079  Sum_probs=21.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -.+-|+|.|++|||||||.+.|....
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCC
Confidence            35678999999999999999887543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.33  E-value=0.084  Score=46.68  Aligned_cols=25  Identities=24%  Similarity=0.102  Sum_probs=20.9

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...++-|+|.|.+|+|||||...+.
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~   44 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFS   44 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHh
Confidence            3457889999999999999987764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.33  E-value=0.03  Score=56.01  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -+++|.|++|||||||.+.|...+
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            389999999999999999887554

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=92.32  E-value=0.083  Score=45.69  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+.+-|+|.|.+|+|||||...+..
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3567899999999999999877653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.31  E-value=0.065  Score=46.98  Aligned_cols=25  Identities=16%  Similarity=0.121  Sum_probs=19.8

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+.+-|+|.|.+|+|||||...|.
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~   42 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFS   42 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHH
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHh
Confidence            3456889999999999999987765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=92.30  E-value=0.08  Score=47.28  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...+.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999998763

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=92.28  E-value=0.074  Score=52.05  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH--H----------HcC----CCeEEEecccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF--R----------VTG----RKSATISIDDF  270 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL--~----------~~G----~~v~vISlDDF  270 (476)
                      .-++.|.|++||||||||..+....  .          ..|    .+|..|++++=
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~  153 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT  153 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence            4589999999999999998877542  2          123    46777777763

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.26  E-value=0.04  Score=59.85  Aligned_cols=19  Identities=26%  Similarity=0.571  Sum_probs=17.3

Q ss_pred             EEEEeCCCCCcHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFAL  251 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L  251 (476)
                      ++||.|++|||||||.+.|
T Consensus       350 ~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          350 FVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEEEECSTTSSHHHHHTTT
T ss_pred             EEEEEeeCCCCHHHHHHHH
Confidence            8999999999999999654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=92.23  E-value=0.086  Score=47.91  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+++-|+|.|.+|+|||||...|.
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHH
Confidence            457889999999999999998775

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=92.22  E-value=0.054  Score=51.45  Aligned_cols=23  Identities=43%  Similarity=0.518  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.|.|++|+||||+|+.+...+.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhc
Confidence            77999999999999999998774

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.20  E-value=0.085  Score=46.08  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +++-|+|.|.+|+|||||...|.
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~   36 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFT   36 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999987764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.19  E-value=0.084  Score=45.99  Aligned_cols=27  Identities=22%  Similarity=-0.010  Sum_probs=21.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ...+-|.|.|.+|+|||||.+.|...+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence            346789999999999999987665543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=92.08  E-value=0.098  Score=48.00  Aligned_cols=24  Identities=17%  Similarity=0.071  Sum_probs=20.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~   50 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=92.05  E-value=0.089  Score=46.77  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=20.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHh
Confidence            345779999999999999998775

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=92.02  E-value=0.077  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+|+|.|++|+|||||.+.|.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~   29 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLL   29 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999998876

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.97  E-value=0.11  Score=46.38  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=19.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~   41 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFV   41 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHH
Confidence            446789999999999999997765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=91.93  E-value=0.1  Score=50.74  Aligned_cols=22  Identities=23%  Similarity=0.119  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      |.+.|++|+|||++|+.|...+
T Consensus        49 vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           49 ILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6689999999999999998877

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=91.87  E-value=0.099  Score=54.84  Aligned_cols=41  Identities=17%  Similarity=0.119  Sum_probs=28.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH---H-HcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF---R-VTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL---~-~~G~~v~vISlDDF  270 (476)
                      .+.+|+|.|+.|+||||||..+....   . .+...+.-++.+..
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            45789999999999999998876432   1 22224555666554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.87  E-value=0.074  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.022  Sum_probs=19.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.+-|+|.|.+|+|||||...|.
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~   42 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLK   42 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456889999999999999987765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.84  E-value=0.1  Score=47.53  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=20.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|+|.|.+|+|||||...|..
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Confidence            4568899999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.83  E-value=0.095  Score=47.65  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|+|.|.+|+|||||.+.|..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHh
Confidence            4567899999999999999987653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=91.83  E-value=0.12  Score=47.64  Aligned_cols=26  Identities=19%  Similarity=-0.027  Sum_probs=23.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |-+..|.|+.||||||+..+|...|.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45888999999999999999988774

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=91.82  E-value=0.098  Score=55.23  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=21.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .+.+|+|.|..|+||||||..+..
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467999999999999999998774

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.81  E-value=0.074  Score=46.28  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=17.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|+|.|.+|+|||||...|.
T Consensus         3 ki~v~G~~~~GKSsli~~l~   22 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLT   22 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58899999999999998765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=91.78  E-value=0.1  Score=52.65  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +.+|.|+.||||||+-.+|...+-
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al~   48 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFALF   48 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            677999999999999999987763

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=91.77  E-value=0.088  Score=55.61  Aligned_cols=38  Identities=29%  Similarity=0.185  Sum_probs=27.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .|.-|.|.|++|+|||++|++|...+   +.....++..++
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l  274 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI  274 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence            44558899999999999999998765   445555554443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=91.77  E-value=0.16  Score=57.18  Aligned_cols=45  Identities=29%  Similarity=0.146  Sum_probs=31.0

Q ss_pred             CCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          219 CPSLRMEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       219 ~~~~~~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      +...|..-.-..|.=|-+.||+|+|||+||++|+..+   |.....|+
T Consensus       226 ~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~  270 (806)
T 3cf2_A          226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN  270 (806)
T ss_dssp             CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEE
T ss_pred             CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEE
Confidence            3434433333567788999999999999999998776   33444444

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.77  E-value=0.11  Score=46.09  Aligned_cols=24  Identities=17%  Similarity=0.016  Sum_probs=19.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...+.
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~   41 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYT   41 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999999987765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.75  E-value=0.071  Score=47.14  Aligned_cols=25  Identities=16%  Similarity=0.123  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|+|.|.+|+|||||...|..
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~   45 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYAD   45 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhc
Confidence            4567899999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=91.73  E-value=0.096  Score=51.41  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          227 IYLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       227 ~~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+.++-.|+|.|.+|+|||||...|.
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~   31 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLL   31 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHh
Confidence            34567799999999999999998765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.72  E-value=0.089  Score=47.20  Aligned_cols=24  Identities=17%  Similarity=0.088  Sum_probs=20.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|+|.|.+|+|||||.+.|.
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            457889999999999999998775

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=91.68  E-value=0.063  Score=48.47  Aligned_cols=24  Identities=25%  Similarity=0.133  Sum_probs=20.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+.|+|.|.+|+|||||...|.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~   50 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLC   50 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHh
Confidence            345678999999999999988765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=91.65  E-value=0.14  Score=48.55  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=19.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+-|+|.|.+|+|||||...|.
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~   47 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHH
Confidence            45579999999999999998775

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.59  E-value=0.11  Score=46.85  Aligned_cols=24  Identities=13%  Similarity=0.093  Sum_probs=20.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+|+|||||...|.
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~   50 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFK   50 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHh
Confidence            456889999999999999998764

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=91.58  E-value=0.18  Score=47.79  Aligned_cols=33  Identities=18%  Similarity=0.061  Sum_probs=28.2

Q ss_pred             EEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          233 YIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       233 VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .|.|+|. +|+||||++..|...|.+.|.+|..+
T Consensus         6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~   39 (228)
T 3of5_A            6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL   39 (228)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence            4667765 99999999999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	476
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	1e-46
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	2e-28
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	1e-07
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	1e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	1e-04

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  161 bits (407), Expect = 1e-46
 Identities = 91/251 (36%), Positives = 125/251 (49%), Gaps = 14/251 (5%)

Query: 234 IGFSAPQGCGKTTLAFAL-DYLFRVTG--RKSATISIDDFYLTAEGQAKLREANRGNALL 290
           I FS PQG GK+  +  + ++L    G  +     SIDDFYLT E Q KL E  + N LL
Sbjct: 30  IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 89

Query: 291 EFRGNAGSHDLQLSVETLTAISKLTK--EGTKMKLPRYDKSAYNGRGDRADPSTWPEIEG 348
           + RG  G+HD++L  E L  I    +  +   + LP+YDKS + G GDR    T  +I+ 
Sbjct: 90  QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC--PTGQKIKL 147

Query: 349 PLTVVLYEGWMLGFKPLP--VEVVKAVDPQLETVNKNLEAYFDAW---DKFIKAWIVIKI 403
           P+ + + EGW LGF P+   +E    +   +  VN  L  Y D      +     IV   
Sbjct: 148 PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTT 207

Query: 404 KDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEH 463
            + + VY WRLQ E  +      GM+DE+V  FV RY+P+Y  YL         GS    
Sbjct: 208 DNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIA-- 265

Query: 464 TLIIEIDDGRN 474
           TL + ID  RN
Sbjct: 266 TLTLGIDSNRN 276

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score =  111 bits (280), Expect = 2e-28
 Identities = 34/220 (15%), Positives = 64/220 (29%), Gaps = 37/220 (16%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           I  +   G G +T+    D +FR  G K+ +I  D F+       K     R  A     
Sbjct: 7   ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATF 66

Query: 294 GNAG--SHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPST---WPEIEG 348
            +    +++L+              E  + +   Y             P     W + + 
Sbjct: 67  SHFSYEANELKELERVFREY----GETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDS 122

Query: 349 PLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSC 408
              ++ YEG         V +    D ++                             + 
Sbjct: 123 DSHLLFYEGLHGAVVNSEVNIAGLADLKI---------GVVP--------------VINL 159

Query: 409 VYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYL 448
            +  ++  + A R     G + E V D + R + AY   +
Sbjct: 160 EWIQKIHRDRATR-----GYTTEAVTDVILRRMHAYVHCI 194

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 36/230 (15%), Positives = 64/230 (27%), Gaps = 40/230 (17%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFR--VTGRKSATISIDDFYLTAEGQAKLREANRGNALLE 291
           I  +     GK+T A  L  L       R+   I+ D F         L+E      L++
Sbjct: 83  ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP---NQVLKE----RGLMK 135

Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLT 351
            +G   S+D+   V+ +   S L      +  P Y    Y+   D        +      
Sbjct: 136 KKGFPESYDMHRLVKFV---SDLKSGVPNVTAPVYSHLIYDVIPD------GDKTVVQPD 186

Query: 352 VVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYE 411
           +++ EG  +                    + +     D  D  I       +     +  
Sbjct: 187 ILILEGLNVLQ-----------SGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINR 235

Query: 412 WRLQAEIAMREAGN-----PGMSDEEVKDFVSRY-----LPAYHAY-LPT 450
           +    E A  +  +       ++ EE                     LPT
Sbjct: 236 FLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPT 285

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 53/224 (23%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRV-----TGRKSATISIDDFYLTAEGQAKLREANRGNA 288
           IG S     GK+++   +  L          ++   +S D FY     + K +       
Sbjct: 5   IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFN 64

Query: 289 LLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEG 348
                 +  + D +L ++TL  I     EG  +++P YD  ++                 
Sbjct: 65  ----FDHPDAFDNELILKTLKEI----TEGKTVQIPVYDFVSH-------SRKEETVTVY 109

Query: 349 PLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIKDPSC 408
           P  VVL+EG +                           ++    + +    +    D   
Sbjct: 110 PADVVLFEGILA--------------------------FYSQEVRDLFQMKLFVDTDADT 143

Query: 409 VYEWRLQAEIAMREAGNPGMSDEEVKD-FVSRYLPAYHAY-LPT 450
               R+  +I+ R     G   E++   +++   PA+  + LPT
Sbjct: 144 RLSRRVLRDISER-----GRDLEQILSQYITFVKPAFEEFCLPT 182

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 16/165 (9%)

Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
           +G       GKTTLA  L    R  G       +DD  +    +                
Sbjct: 25  LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84

Query: 294 GNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSA--YNGRGDRADPSTWPEIEGP-- 349
                              +  K   ++ LP YD     ++ R      S    IEG   
Sbjct: 85  DVEWLTHQLF---------RQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFL 135

Query: 350 -LTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDK 393
                      + +   P E+  A +   + V +N++ + + + K
Sbjct: 136 QRKEWRPFFDFVVYLDCPREIRFARE--NDQVKQNIQKFINRYWK 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	100.0
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	100.0
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.97
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.94
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.8
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.03
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.72
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.46
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.28
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.26
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.19
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.11
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.09
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.08
d1okkd2	207	GTPase domain of the signal recognition particle r	98.07
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.98
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.96
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.94
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.94
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.93
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.93
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.85
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.85
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.83
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.77
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.77
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.68
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.67
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.67
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.65
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.64
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.6
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.59
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.59
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.56
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.44
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.44
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.39
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.37
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.37
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.31
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.31
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.29
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.26
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.25
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.22
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.21
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.14
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.11
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.07
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.99
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.88
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.79
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.71
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.67
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.6
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.58
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.53
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.52
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.52
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.51
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.48
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.43
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.42
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.42
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.41
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.37
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.36
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.36
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.36
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.32
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.22
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.15
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.11
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.11
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.08
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.07
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.07
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.05
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.04
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.03
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.97
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.91
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.9
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.88
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.84
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.82
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.81
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.8
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.7
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.48
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.45
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.42
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.3
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.3
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.29
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.24
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.21
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.2
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.14
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.04
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.83
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.77
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.74
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.58
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.54
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	94.52
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.44
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.39
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.24
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.24
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.23
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.15
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.06
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.98
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.9
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.76
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.73
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.73
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.71
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.6
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.57
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.5
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.42
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.39
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.34
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.33
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.31
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.3
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.14
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.97
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.96
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.9
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.82
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.76
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.75
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.73
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.69
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.51
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.49
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.48
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.47
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.38
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.2
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.15
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.0
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.89
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.87
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.83
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.82
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.7
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.61
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.59
d2fh5b1	207	Signal recognition particle receptor beta-subunit	91.56
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.53
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.48
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.44
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.43
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.39
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.38
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.37
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.13
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.08
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.06
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.04
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.91
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	90.91
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.91
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.9
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.71
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	90.59
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.53
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.5
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	90.44
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.44
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	90.42
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.31
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	90.15
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.09
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.05
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.96
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.73
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.68
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	89.66
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.65
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	89.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.57
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.49
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.49
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.26
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.24
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.22
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	89.19
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.14
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	89.05
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.02
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	88.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	88.6
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.49
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.47
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	88.31
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.29
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	88.15
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.06
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.92
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	87.85
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.44
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	87.41
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.37
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	87.32
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.3
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	87.07
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	86.95
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	86.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	86.79
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	86.65
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	86.6
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.21
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.11
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.9
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	85.74
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	85.72
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.51
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.14
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	85.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	85.01
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	84.75
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	84.47
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	84.38
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.28
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	82.59
d1tuea_	205	Replication protein E1 helicase domain {Human papi	81.96
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.12
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.93
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.6
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	80.12

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-51  Score=407.87  Aligned_cols=245  Identities=35%  Similarity=0.541  Sum_probs=207.8

Q ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-c--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHH
Q 044604          227 IYLPWWYIGFSAPQGCGKTTLAFALDYLFRV-T--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQL  303 (476)
Q Consensus       227 ~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~-~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~l  303 (476)
                      ..+.|+||||+|+|||||||||..|...|.+ .  ...|++||+||||+++++|.++++.++.|||+.+||+|||||+++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~l  102 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL  102 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHH
Confidence            3467999999999999999999988776644 2  357889999999999999999999888899999999999999999


Q ss_pred             HHHHHHHhhhhh--cCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhc--cCchhhH
Q 044604          304 SVETLTAISKLT--KEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKA--VDPQLET  379 (476)
Q Consensus       304 L~e~L~~Lk~~~--k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~--~d~~l~~  379 (476)
                      +.++|..|++..  +.++.|.+|+|||+.++|.|||.+.  |..|..|.|||||||||+|+.|.....+..  ...+...
T Consensus       103 l~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~--~~~i~~~~dviI~EGWcvG~~p~~~~~~~~~~~~~~~~~  180 (286)
T d1odfa_         103 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPT--GQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVD  180 (286)
T ss_dssp             HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSS--CEEEESSCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHH
T ss_pred             HHHHHHHHHhhccccccccccCCchHHHhhccccccCcc--cceecCCCCEEEEechhhcccchhhhhhccccchhhhhH
Confidence            999999996320  1234799999999999999999874  788888899999999999999987554432  2234466


Q ss_pred             HhHHHhhhhhhh-h--hccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhhcCC
Q 044604          380 VNKNLEAYFDAW-D--KFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGP  456 (476)
Q Consensus       380 vn~~L~dy~Dlw-~--ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~~~P  456 (476)
                      +|..+..+.++| +  .+.|.||+|++++++.|++||++||++|++..+.|||+|||.+|+++|||+|+.|+.++....+
T Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~i~Lka~~f~~V~~WR~~QE~~L~~~~g~gMs~eqv~~FV~~y~~~~~~~l~~~~~~~~  260 (286)
T d1odfa_         181 VNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSES  260 (286)
T ss_dssp             HHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhhhccccccccCCchhHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            777888888863 2  3468899999999999999999999999988899999999999999999999999999876533


Q ss_pred             CCCCCCceEEEEeCCCCCC
Q 044604          457 NGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       457 ~~a~~~~~Lvl~id~~r~v  475 (476)
                      ..  .+++++|++|++|+|
T Consensus       261 lp--~~adlvl~lD~~r~I  277 (286)
T d1odfa_         261 LG--SIATLTLGIDSNRNV  277 (286)
T ss_dssp             SS--SSEEEEEEECTTSCE
T ss_pred             CC--CcceEEEEECCCCce
Confidence            22  356799999999987

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-47  Score=384.17  Aligned_cols=273  Identities=16%  Similarity=0.157  Sum_probs=218.7

Q ss_pred             CCCccccchhhhcccHHHHHHHH---------HHHHHHhcCCC-CCCCccccceeeeeeHHHHHHHHHhhhh-cC--Ccc
Q 044604          156 LIDKMGFSKEKIGDSIDKWIAYN---------SYLCRLFQLNE-LYLTFPQKVGFFTTTYLFSCGVKIKFLS-MC--PSL  222 (476)
Q Consensus       156 l~~~~~f~~e~~~~~i~~w~~l~---------~~l~~l~~lne-~~l~~~~~~r~~ylPL~~~l~~~v~~~~-~~--~~~  222 (476)
                      ++||+.|+|++       |++|+         .+|.++.|+|| .+++++.   ++|+||+++|+.++.+.+ .+  ...
T Consensus         1 ~~~~~~~~~~~-------w~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~v~---~iylpl~~l~~~~~~~~~~~~~~~~~   70 (308)
T d1sq5a_           1 MTPYLQFDRNQ-------WAALRDSVPMTLSEDEIARLKGINEDLSLEEVA---EIYLPLSRLLNFYISSNLRRQAVLEQ   70 (308)
T ss_dssp             CCSEEEEEHHH-------HHHTCC---C-CCHHHHHHHHHHCTTCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeCHHH-------HHhhccCCCCCCCHHHHHHHhCCCCcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999       99984         38999999997 3666665   999999999999988842 11  122


Q ss_pred             c-cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCc
Q 044604          223 R-MEKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSH  299 (476)
Q Consensus       223 ~-~~~~~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~  299 (476)
                      | +....+.|+||||+|+|||||||||+.|+.+|+++  +++|.+|++||||++++++++   .    +++..+|+|+||
T Consensus        71 fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~---~----~~~~~~g~Pes~  143 (308)
T d1sq5a_          71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKE---R----GLMKKKGFPESY  143 (308)
T ss_dssp             HHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHH---H----TCTTCTTSGGGB
T ss_pred             HhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHH---h----cCCccCCchHhh
Confidence            3 55566889999999999999999999999999875  689999999999999988765   2    456778999999


Q ss_pred             cHHHHHHHHHHhhhhhcCC-ceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhh
Q 044604          300 DLQLSVETLTAISKLTKEG-TKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLE  378 (476)
Q Consensus       300 D~~lL~e~L~~Lk~~~k~G-~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~  378 (476)
                      |+++|.++|..|+    +| +.|.+|+|||.+++    +.++. ...+ .+.||||||||++|+.+.+....        
T Consensus       144 D~~~L~~~L~~lk----~g~~~v~~P~yd~~~~d----~~~~~-~~~~-~~~dIlIvEGi~vL~~~~~~~~~--------  205 (308)
T d1sq5a_         144 DMHRLVKFVSDLK----SGVPNVTAPVYSHLIYD----VIPDG-DKTV-VQPDILILEGLNVLQSGMDYPHD--------  205 (308)
T ss_dssp             CHHHHHHHHHHHT----TTCSCEEECCEETTTTE----ECTTC-CEEE-C-CCEEEEECTTTTCCGGGCTTS--------
T ss_pred             hHHHHHHHHHHHH----cCCCcceeeccchhhcc----cCCCC-ceEe-CCCCEEEEcchhhccCccccccc--------
Confidence            9999999999994    56 57999999999876    45433 2344 55599999999999876532211        


Q ss_pred             HHhHHHhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHHhHHhhh
Q 044604          379 TVNKNLEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGN----------PGMSDEEVKDFVSRYLPAYHAYL  448 (476)
Q Consensus       379 ~vn~~L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~----------~GmS~EeV~~Fv~r~~Paye~Y~  448 (476)
                      ..+..|++++|+ ++|||+       +.+.+++||++|+.++|.+..          .+|+++|+.+|+..+|..  ...
T Consensus       206 ~~~~~l~d~~D~-~Ifvda-------~~~~~~~r~i~R~~~~r~~a~~d~~~~~~~y~~~~~~ea~~~a~~~w~~--i~~  275 (308)
T d1sq5a_         206 PHHVFVSDFVDF-SIYVDA-------PEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKE--INW  275 (308)
T ss_dssp             CCSSCGGGGCSE-EEEEEC-------CHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHH--THH
T ss_pred             cccchhhhhhhe-eeeecC-------CHHHHHHHHHHHHHHHhcccccChHHHHHHHhccCHHHHHHHHHHHHHH--cch
Confidence            112358889998 888888       889999999999998887532          579999999999988765  445


Q ss_pred             hhhhhc-CCCCCCCCceEEEEeCCCCCC
Q 044604          449 PTLYSE-GPNGSDPEHTLIIEIDDGRNP  475 (476)
Q Consensus       449 ~~l~~~-~P~~a~~~~~Lvl~id~~r~v  475 (476)
                      +++.++ .|++  ++|++||.+|.||.|
T Consensus       276 ~nl~~~I~Ptk--~rADlIi~~~~dh~v  301 (308)
T d1sq5a_         276 LNLKQNILPTR--ERASLILTKSANHAV  301 (308)
T ss_dssp             HHHHHTTGGGG--GGCSEEEEECGGGCE
T ss_pred             hhHHHhCccch--hcceEEEEcCCCCcE
Confidence            555555 7887  688899999999976

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.97  E-value=4.4e-31  Score=261.24  Aligned_cols=190  Identities=17%  Similarity=0.238  Sum_probs=143.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc-CHHHHHH-HHHcc-cCCccccccCCCCCccHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL-TAEGQAK-LREAN-RGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl-~~~er~~-la~~~-p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      +.||||+|+|||||||+|+.|..+|++.|.++++|++|+||+ .+.++.. +.+.. ..+.-+.+ +.|+++|+++|.+.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~-~~P~A~d~dlL~~~   82 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSH-FSYEANELKELERV   82 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCST-TSGGGBCHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCC-CCcccccHHHHHHH
Confidence            448999999999999999999999998899999999999996 4443321 11110 01112333 46999999999999


Q ss_pred             HHHhhhhhcCCceEEeeccccccccCCCC---CCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHH
Q 044604          308 LTAISKLTKEGTKMKLPRYDKSAYNGRGD---RADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNL  384 (476)
Q Consensus       308 L~~Lk~~~k~G~~v~iP~YD~s~~~G~gD---r~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L  384 (476)
                      |+.|+    +|+.+.+|.|||.++.....   ....+.|..+..+.+|||+||+++++.+..               .+|
T Consensus        83 l~~L~----~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~---------------~~i  143 (288)
T d1a7ja_          83 FREYG----ETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE---------------VNI  143 (288)
T ss_dssp             HHHHH----HHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSS---------------CBC
T ss_pred             HHHHH----CCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccch---------------hhh
Confidence            99994    78899999999987643221   112335888888899999999999985432               347


Q ss_pred             hhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhhhhhh
Q 044604          385 EAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYS  453 (476)
Q Consensus       385 ~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~~l~~  453 (476)
                      ++++|+ ++|||+       +.++.+.||++||.     ..||+|.|+|.+.+.+.+|+|+.|+.+.++
T Consensus       144 r~~~Dl-kIfVd~-------d~dlrliRRI~RD~-----~eRG~s~E~V~~~i~rrmpdy~~yI~Pq~~  199 (288)
T d1a7ja_         144 AGLADL-KIGVVP-------VINLEWIQKIHRDR-----ATRGYTTEAVTDVILRRMHAYVHCIVPQFS  199 (288)
T ss_dssp             GGGCSE-EEEEEE-------CHHHHHHHHHHHTS-----SSCCSCCCCHHHHHHHHHHHHHHHTGGGGG
T ss_pred             HhhcCe-EEEEEC-------CCCeEEEeeehhhh-----hhcCCCHHHHHHHHHhcchHHHHHHHHhhh
Confidence            888898 888887       88999999999986     579999999988888899999999999884

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.8e-27  Score=215.22  Aligned_cols=189  Identities=21%  Similarity=0.329  Sum_probs=146.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCCeEEEeccccccCHH-HHHHHHHcccCCccccccCCCCCccHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT-----GRKSATISIDDFYLTAE-GQAKLREANRGNALLEFRGNAGSHDLQL  303 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-----G~~v~vISlDDFYl~~~-er~~la~~~p~npLl~~rG~P~t~D~~l  303 (476)
                      .|+||||+|++||||||+|+.|...|+..     +..+.+|++||||++.. +.......    +.+. .+.|+++|+++
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~   75 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK----GQFN-FDHPDAFDNEL   75 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHT----TCSC-TTSGGGBCHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhh----cccc-cCCcHHHHHHH
Confidence            49999999999999999999999998754     35789999999997632 22222222    1122 26799999999


Q ss_pred             HHHHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHH
Q 044604          304 SVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKN  383 (476)
Q Consensus       304 L~e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~  383 (476)
                      +.+.+..+    ++|..+.+|.||+..+.    +..   +.....+.+++||||+++++                  +..
T Consensus        76 l~~~~~~~----~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~iiveg~~~l~------------------~~~  126 (213)
T d1uj2a_          76 ILKTLKEI----TEGKTVQIPVYDFVSHS----RKE---ETVTVYPADVVLFEGILAFY------------------SQE  126 (213)
T ss_dssp             HHHHHHHH----HTTCCEEEEEEETTTTE----EEE---EEEEECCCSEEEEECTTTTS------------------SHH
T ss_pred             HHhhhhhh----hcCCccccccccccccc----ccC---ceEEecccceEEecchhhhc------------------cHH
Confidence            99999988    47888999999998754    221   12333677999999999986                  346


Q ss_pred             HhhhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhHHhhhhhhhhcCCCCCCCC
Q 044604          384 LEAYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEV-KDFVSRYLPAYHAYLPTLYSEGPNGSDPE  462 (476)
Q Consensus       384 L~dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV-~~Fv~r~~Paye~Y~~~l~~~~P~~a~~~  462 (476)
                      +++++|+ .+|||+       +.+..++||++|+..     .+|.+.|++ ..|..+.+|+|+.|+.+...        .
T Consensus       127 l~~~~D~-~i~v~~-------~~~~~~~R~~~Rd~~-----~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~--------~  185 (213)
T d1uj2a_         127 VRDLFQM-KLFVDT-------DADTRLSRRVLRDIS-----ERGRDLEQILSQYITFVKPAFEEFCLPTKK--------Y  185 (213)
T ss_dssp             HHHHCSE-EEEEEC-------CHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHTHHHHHHHHTGGGGG--------G
T ss_pred             HHhhhhe-eeeecC-------CHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHhHHHHHHHhhhhHh--------c
Confidence            8888888 677776       889999999999874     468898887 88888999999999877653        3


Q ss_pred             ceEEEEeCCCC
Q 044604          463 HTLIIEIDDGR  473 (476)
Q Consensus       463 ~~Lvl~id~~r  473 (476)
                      |++||..+.++
T Consensus       186 ADlIi~~~~d~  196 (213)
T d1uj2a_         186 ADVIIPRGADN  196 (213)
T ss_dssp             CSEEEETGGGC
T ss_pred             CCEEEeCCCcc
Confidence            45999877664

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.80  E-value=3.2e-20  Score=164.58  Aligned_cols=170  Identities=15%  Similarity=0.111  Sum_probs=102.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHHHHHHHcccCCccccccCCCCCccHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFRGNAGSHDLQLSVET  307 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er~~la~~~p~npLl~~rG~P~t~D~~lL~e~  307 (476)
                      .+.|+||||+|++||||||||+.|...|+..+..+.++++|+||.+..++.....     +.....+.+...+...+...
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   93 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGN-----EEWFEYYYLQWDVEWLTHQL   93 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSS-----CHHHHHHHTSSCHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccccccCHHHHHHhhc-----ccccccCcchHHHHHHHHHH
Confidence            3569999999999999999999999999998999999999999999876543211     11111122333333344444


Q ss_pred             HHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhhh
Q 044604          308 LTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAY  387 (476)
Q Consensus       308 L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~dy  387 (476)
                      +..+    +.|..+.+|.|++....    +..   +.....+.+++++||.+++..                   .+.++
T Consensus        94 ~~~~----~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~ivi~e~~~~~~~-------------------~~~~~  143 (198)
T d1rz3a_          94 FRQL----KASHQLTLPFYDHETDT----HSK---RTVYLSDSDMIMIEGVFLQRK-------------------EWRPF  143 (198)
T ss_dssp             GGGT----TTCSEEEEEEEETTTTE----EEE---EEEECTTCSEEEEEETTTTST-------------------TTGGG
T ss_pred             HHHh----hccCccccccchhhhcc----ccc---cccccccccccccccchhccc-------------------ccccc
Confidence            4555    57889999999987632    211   223445668999999887642                   34555


Q ss_pred             hhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHhhhh
Q 044604          388 FDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLP  449 (476)
Q Consensus       388 ~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Paye~Y~~  449 (476)
                      +|+ .+|+|+       +.+..++|+++|         +|.+.+++.......+|.|..+.+
T Consensus       144 ~d~-~i~l~~-------~~e~~~~R~~~r---------~~~~~~~~~~~~~~~~~~y~~~~~  188 (198)
T d1rz3a_         144 FDF-VVYLDC-------PREIRFARENDQ---------VKQNIQKFINRYWKAEDYYLETEE  188 (198)
T ss_dssp             CSE-EEEECC-------C-----------------------CHHHHHHHHHHHHHHHHHHHC
T ss_pred             cee-eeeccC-------cHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHhcC
Confidence            555 455554       567766666554         366777764433334454444443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=6e-12  Score=112.52  Aligned_cols=156  Identities=18%  Similarity=0.102  Sum_probs=82.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH--HHHHHHcccCCccccccCCCCCccHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG--QAKLREANRGNALLEFRGNAGSHDLQLSVE  306 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e--r~~la~~~p~npLl~~rG~P~t~D~~lL~e  306 (476)
                      +.|+||||+|++||||||+|+.|+.    .|.  .+++.|++......  ...+.+..   +   .....+.++...+.+
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~----~g~--~~~~~D~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~   68 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRS----WGY--PVLDLDALAARARENKEEELKRLF---P---EAVVGGRLDRRALAR   68 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH----TTC--CEEEHHHHHHHHHHHTHHHHHHHC---G---GGEETTEECHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH----CCC--eEEEccHHHHHhhhcccccccccc---c---ceeccCchhhhhHHH
Confidence            4699999999999999999988753    354  46889988643211  11111111   1   112346788877665


Q ss_pred             HHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHhh
Q 044604          307 TLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEA  386 (476)
Q Consensus       307 ~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~d  386 (476)
                      .+-.=............|......        .. .|  ...+..++|+|+..++..                   .+..
T Consensus        69 ~i~~~~~~~~~l~~~~~~~~~~~~--------~~-~~--~~~~~~~vi~e~~~~~~~-------------------~~~~  118 (191)
T d1uf9a_          69 LVFSDPERLKALEAVVHPEVRRLL--------ME-EL--SRLEAPLVFLEIPLLFEK-------------------GWEG  118 (191)
T ss_dssp             HHTTSHHHHHHHHHHHHHHHHHHH--------HH-HH--HTCCCSEEEEECTTTTTT-------------------TCGG
T ss_pred             hhhcCchhhhhhhhhhhHHHHHHH--------Hh-hh--hhcccceEEEEeeccccc-------------------cccc
Confidence            431000000001112223222111        00 01  113458999999876531                   2444


Q ss_pred             hhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 044604          387 YFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPA  443 (476)
Q Consensus       387 y~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Pa  443 (476)
                      .+|+ .+|||+       +.+...+|.++|         .|++.+++..+.+.-+|.
T Consensus       119 ~~d~-vI~v~a-------~~e~r~~Rl~~R---------~~~~~~~~~~~~~~q~~~  158 (191)
T d1uf9a_         119 RLHG-TLLVAA-------PLEERVRRVMAR---------SGLSREEVLARERAQMPE  158 (191)
T ss_dssp             GSSE-EEEECC-------CHHHHHHHHHTT---------TCCTTHHHHHHHTTSCCH
T ss_pred             ccee-EEEEec-------chhhHHHHHHhc---------ccchHHHHHHHHHhCCCH
Confidence            4554 444444       445544433322         488999998877766664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.72  E-value=1e-09  Score=100.02  Aligned_cols=156  Identities=16%  Similarity=0.122  Sum_probs=75.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----CH-HHHHHHHHcccCCccccccCCCCCccHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----TA-EGQAKLREANRGNALLEFRGNAGSHDLQLSV  305 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~~-~er~~la~~~p~npLl~~rG~P~t~D~~lL~  305 (476)
                      .+||||+|+.||||||+|+.|+.    .|  +.+++.|..++    +. .....+.+..+.+ .+   ..-+++|...+.
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~----~G--~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~-~~---~~d~~i~r~~l~   71 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD----LG--VPLVDADVVAREVVAKDSPLLSKIVEHFGAQ-IL---TEQGELNRAALR   71 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT----TT--CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTT-CC---------CHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH----CC--CeEEEchHHHHHHHhccchhHHHHHHhcccc-ee---cCCCcccHHHHh
Confidence            48999999999999999987753    24  56789998753    22 2222222222111 11   223577777666


Q ss_pred             HHHHHhhhhhcCCceEEeeccccccccCCCCCCCCCCCceecCCCcEEEEcccccccCCCcchhhhccCchhhHHhHHHh
Q 044604          306 ETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLE  385 (476)
Q Consensus       306 e~L~~Lk~~~k~G~~v~iP~YD~s~~~G~gDr~~~~~w~~V~~P~DVVIVEG~~ll~~p~~~~~~~~~d~~l~~vn~~L~  385 (476)
                      +.+-.-+..++.-+.+-.|..-....          .|.. ..+..++|+|+-.++. .                  .+.
T Consensus        72 ~~vf~~~~~~~~l~~i~hp~v~~~~~----------~~~~-~~~~~~vv~e~~ll~e-~------------------~~~  121 (205)
T d1jjva_          72 ERVFNHDEDKLWLNNLLHPAIRERMK----------QKLA-EQTAPYTLFVVPLLIE-N------------------KLT  121 (205)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHH----------HHHH-TCCSSEEEEECTTTTT-T------------------TCG
T ss_pred             hhhhhhhhhhhHhhcccCHHHHHHHH----------HHHh-hccCCeEEEEeccccc-c------------------chh
Confidence            55422110000001222232111110          0111 1345789999766542 1                  133


Q ss_pred             hhhhhhhhccceEEEEecCCCchhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 044604          386 AYFDAWDKFIKAWIVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPA  443 (476)
Q Consensus       386 dy~Dlw~ifVDa~I~L~~~d~d~v~~WRleRE~~Lr~~~~~GmS~EeV~~Fv~r~~Pa  443 (476)
                      ..+|.       .|++.+ +.+...+|+++|         .|++.+++.+.+..-||.
T Consensus       122 ~~~d~-------ii~v~~-~~~~r~~R~~~R---------~~~s~e~~~~~~~~Q~~~  162 (205)
T d1jjva_         122 ALCDR-------ILVVDV-SPQTQLARSAQR---------DNNNFEQIQRIMNSQVSQ  162 (205)
T ss_dssp             GGCSE-------EEEEEC-CHHHHHHHHC--------------CHHHHHHHHHHSCCH
T ss_pred             hhhhh-------eeeecc-hHHHHHHHHHhc---------CCchHHHHHHHHHhCCCH
Confidence            33443       344444 556655555443         378999998888776665

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=3.6e-08  Score=89.85  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=43.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc----C-HHHHHHHHHcccCCccccccCCCCCccHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL----T-AEGQAKLREANRGNALLEFRGNAGSHDLQLSV  305 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl----~-~~er~~la~~~p~npLl~~rG~P~t~D~~lL~  305 (476)
                      .|||||+|+.||||||+|+.|..+    |  ..+++.|.+.+    + ......+.+....    ...+..+..|...+.
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~----G--~~vidaD~i~~~l~~~~~~~~~~i~~~fg~----~i~~~~~~i~r~~L~   72 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL----G--INVIDADIIARQVVEPGAPALHAIADHFGA----NMIAADGTLQRRALR   72 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT----T--CEEEEHHHHHHHTTSTTCTHHHHHHHHHCG----GGBCTTSCBCHHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHC----C--CcEEEchHHHHHHHhccchHHHHHHHHhhc----ccccCCcccchhhhh
Confidence            489999999999999999877532    4  56789998874    1 1222233222111    112446788887776


Q ss_pred             HHH
Q 044604          306 ETL  308 (476)
Q Consensus       306 e~L  308 (476)
                      +.+
T Consensus        73 ~~v   75 (208)
T d1vhta_          73 ERI   75 (208)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.39  E-value=1.9e-08  Score=89.15  Aligned_cols=29  Identities=17%  Similarity=0.058  Sum_probs=26.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .++|++|+|.|+.||||||+++.|++.|.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999999988774

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=2.7e-07  Score=81.18  Aligned_cols=41  Identities=15%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.+|.+.|.+||||||+|+.|+..|+..|.++.+++.|.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r   42 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR   42 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccccee
Confidence            88999999999999999999999999889999999999863

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4.5e-07  Score=76.94  Aligned_cols=38  Identities=29%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ||+|+|.+|||||||++.|...|...|.++.++-.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            79999999999999999999999989999999888865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=7.4e-07  Score=83.00  Aligned_cols=56  Identities=23%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCH-HHHHHHHHc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA-EGQAKLREA  283 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~-~er~~la~~  283 (476)
                      .+.|.||.+.||+||||||++..|+..+...|.+|.+|++|.|--.. ++++.+++.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~   62 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQR   62 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhh
Confidence            35799999999999999999999999998889999999999987654 344455544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=9.9e-07  Score=82.14  Aligned_cols=55  Identities=25%  Similarity=0.190  Sum_probs=45.9

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHH-HHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEG-QAKLRE  282 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~e-r~~la~  282 (476)
                      +.+|.||.+.||+|+||||++..|+..+...|.+|.+|++|-|--...+ ++..++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~   63 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGE   63 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhh
Confidence            4689999999999999999999999999888999999999998765433 343433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.17  E-value=8.9e-07  Score=76.69  Aligned_cols=39  Identities=18%  Similarity=0.005  Sum_probs=35.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ||||+|.+|||||||+..|...|+..|.+|.+|-.|.+-
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~   41 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG   41 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence            899999999999999999999999999999999888764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.11  E-value=7.8e-07  Score=75.83  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=37.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .||+|.|++||||||+++.|...|+..|.++.+++.+++...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~   43 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE   43 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHH
Confidence            389999999999999999999999988889999988887643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.11  E-value=1.3e-06  Score=81.10  Aligned_cols=54  Identities=28%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHHHH-HHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQ-AKLRE  282 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~er-~~la~  282 (476)
                      +.|.||.+.||+|+||||++..|+..+...|.+|.+|++|-|--...+| +..++
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~   64 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ   64 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhcc
Confidence            6799999999999999999999999998889999999999998665443 44443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.09  E-value=1.5e-06  Score=73.63  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGR  260 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~  260 (476)
                      ..++++|.|+|.+||||||+|++|+..|...+.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            457899999999999999999999999976543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.08  E-value=7.7e-07  Score=75.47  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=32.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ..||.|+|++||||||+|+.|++.|   |.....+..|.|+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l---~~~~~~~~~d~~~~   41 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLIE   41 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCCeEEeecchhhc
Confidence            3589999999999999999999987   44566677777754

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=2.4e-06  Score=79.15  Aligned_cols=55  Identities=18%  Similarity=0.131  Sum_probs=46.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH-HHHHHHHc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE-GQAKLREA  283 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~-er~~la~~  283 (476)
                      .+|.||.+.||+||||||++..|+..+...|.+|.+|++|-|--..- +++.+++.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~   59 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR   59 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccc
Confidence            46789999999999999999999999988899999999999987764 44455543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.98  E-value=4.2e-06  Score=77.31  Aligned_cols=55  Identities=25%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH-HHHHHHHc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE-GQAKLREA  283 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~-er~~la~~  283 (476)
                      +.+.||.+.|++|+||||++..|+..+...|.+|.+|++|.|--... +++.+++.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~   63 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK   63 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHh
Confidence            45679999999999999999999999988899999999999876543 34444443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.96  E-value=1.4e-06  Score=74.27  Aligned_cols=39  Identities=31%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+.+|.|.|++||||||+|+.|+..|   |.....++.|+|.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l---g~~~~~~~~d~~~   41 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLW   41 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEecHHHHH
Confidence            35689999999999999999998765   6677777788775

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.94  E-value=2.4e-06  Score=75.38  Aligned_cols=39  Identities=18%  Similarity=0.017  Sum_probs=33.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|.+|.|.||+||||||+|+.|+..+     ....|++++.+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~-----g~~~i~~g~~~r   42 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAGDLLR   42 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEchhhHHH
Confidence            468999999999999999999999887     356788888763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.3e-06  Score=74.18  Aligned_cols=42  Identities=24%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++.+|.++|.+||||||+|+.|+..|...+..+..+..|.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~   59 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR   59 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhh
Confidence            678999999999999999999999998766666666655544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=4.9e-06  Score=70.75  Aligned_cols=42  Identities=14%  Similarity=0.072  Sum_probs=34.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      ..+.||.|.|++||||||+|+.|++.|     .+..++.|++.....
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l-----~~~~~~~d~~~~~~~   45 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRN   45 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCeechhhhhHHHH
Confidence            456788899999999999999999988     356788888875543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.93  E-value=1.9e-06  Score=72.43  Aligned_cols=37  Identities=27%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .+|.|+|++||||||+|+.|+..+.    ...+++.|+|+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~----~~~~~~~d~~~~   39 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINH   39 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC----CCEEEehHHHHH
Confidence            4788999999999999999998873    356678888763

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.85  E-value=4.7e-06  Score=69.82  Aligned_cols=36  Identities=25%  Similarity=0.100  Sum_probs=29.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .+|.|+|++||||||+|+.|.+.    ...+..++.|++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~----~~~~~~~~~d~~~   38 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR   38 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh----CCCCEEechHHHH
Confidence            46789999999999999887543    3468889999874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.85  E-value=4.2e-06  Score=71.52  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .||.|.|++||||||+++.|+..|...|..+..++.+|+++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~   43 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLA   43 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchH
Confidence            378899999999999999999999988889988988887644

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.83  E-value=3.7e-06  Score=75.06  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=35.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      ++++|+|+||+||||||.|+.|+..|     ....||+-++|+..+
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~l-----g~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh-----CCcEECHHHHHHHHH
Confidence            35789999999999999999999998     467899999997443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=5.7e-06  Score=73.06  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=33.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      +.||+|.||+||||||+|+.|+..|     +..-||+=|+|+.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~-----gl~~iStGdLlR~   40 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAIYRV   40 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCcEECHHHHHHH
Confidence            3499999999999999999999998     3567999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.77  E-value=5.7e-06  Score=69.91  Aligned_cols=33  Identities=30%  Similarity=0.306  Sum_probs=27.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.|+|++||||||+|+.|+..|     ....+.+|+..
T Consensus         7 I~i~G~pGsGKTTia~~La~~l-----~~~~i~~~~~~   39 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS-----GLKYINVGDLA   39 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-----CCcEEechHHH
Confidence            5599999999999999999887     34567777764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.9e-06  Score=72.14  Aligned_cols=37  Identities=14%  Similarity=0.060  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |++|.|.||+||||||.|+.|+..+     ....|++++.++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~-----g~~~i~~g~llR   37 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGELLR   37 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-----CCceEcHHHHHH
Confidence            7899999999999999999999887     346688888774

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=8.6e-06  Score=68.67  Aligned_cols=36  Identities=14%  Similarity=0.041  Sum_probs=28.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -+..|+|.|++||||||||+.|+..++     ...+..|..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~-----~~~i~~~~~   41 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGR   41 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhC-----CCeEeeehH
Confidence            356899999999999999999999873     344555543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.8e-05  Score=77.57  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=38.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .+.++|||+|++|||||||...|...+...|.+|.+|..|=.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDps   93 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   93 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCc
Confidence            467999999999999999999999888888999999999943

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.67  E-value=1e-05  Score=68.71  Aligned_cols=39  Identities=15%  Similarity=0.133  Sum_probs=29.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      .++..|.|.|++||||||+|+.|+..|.    ...+++.|++.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~----~~~~~~~~~~~   41 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKLV   41 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC----CCcEEeHHHHH
Confidence            3567899999999999999999998874    13445555443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.67  E-value=2.2e-05  Score=76.69  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+.++|||+|++|+|||||...|...+...|.+|.+|..|
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD   88 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   88 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence            4679999999999999999999988887789999999988

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=9.8e-06  Score=66.88  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=26.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |-|.|++||||||+|+.|+..|     ++..+..|+++
T Consensus         5 I~l~G~~GsGKSTvak~La~~L-----~~~~id~~~~~   37 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQEI   37 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCCeEeechhH
Confidence            6677999999999999999988     34556777664

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.4e-05  Score=65.85  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .|.|.|++|+|||||++.+...|...|..+.++..+-.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~   40 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV   40 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            48899999999999999999999888888877766543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.60  E-value=9.5e-06  Score=71.37  Aligned_cols=38  Identities=21%  Similarity=0.146  Sum_probs=31.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|..|.|.||+||||||+|+.|+..+     ....|++|++..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~-----~~~~is~~~~~~   39 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY-----QLAHISAGDLLR   39 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH-----CCEECCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH-----CCcEEehhHHHH
Confidence            47789999999999999999999888     345678877664

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=9.8e-06  Score=71.68  Aligned_cols=38  Identities=13%  Similarity=-0.097  Sum_probs=30.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.+|-++|++||||||+|+.|...+     ....|+.|++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~-----~~~~i~~D~~~   49 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG   49 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG-----TCEEEEHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc-----CCEEEchHHHH
Confidence            568899999999999999998775443     46788998763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=1.7e-05  Score=69.99  Aligned_cols=38  Identities=21%  Similarity=0.065  Sum_probs=32.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...||.|.||+||||||+|+.|+..+     ....|+++|.+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~-----g~~~is~gdl~R   44 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDLLR   44 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEehhHHHH
Confidence            45578899999999999999999887     467799988874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.56  E-value=2e-05  Score=71.56  Aligned_cols=41  Identities=22%  Similarity=0.062  Sum_probs=35.4

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ...|..|-+.||+||||||+|+.|+..+   +.....|+.|+|-
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d~~~   69 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK   69 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecHHHH
Confidence            4568889999999999999999999877   4578889999885

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.54  E-value=2.9e-05  Score=70.81  Aligned_cols=43  Identities=19%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCCeEEEecccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFR-VTGRKSATISIDDF  270 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~-~~G~~v~vISlDDF  270 (476)
                      .++++||-|+|.|||||||+|+.|...|. ..+..+.++..|.+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            35789999999999999999999987664 45778888888876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.44  E-value=5.5e-05  Score=67.51  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      +||+|.|+.|||||||.+.|...+. .+.++++|..|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecC
Confidence            5899999999999999998887664 36688889766

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=5.8e-05  Score=66.45  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=34.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ++|.|.|.-||||||+++.|.+.|...|..|.++.--++-.+
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~   42 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQS   42 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCc
Confidence            379999999999999999999999988998887754433333

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.39  E-value=5.2e-05  Score=66.40  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      ...|| |.||+||||||+|+.|+..+     ....|+++|.+.
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~~-----g~~~i~~gdllr   39 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKNF-----CVCHLATGDMLR   39 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHHh-----CCeEEeHHHHHH
Confidence            34555 77999999999999999887     356789988884

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.37  E-value=3.8e-05  Score=66.13  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++||||||+|+.|+..+     ....|++|+++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~-----~~~~i~~~~ll~   36 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY-----GIPHISTGDMFR   36 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCceechhHHHH
Confidence            37799999999999999999888     456789999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.37  E-value=4.1e-05  Score=68.23  Aligned_cols=40  Identities=18%  Similarity=0.186  Sum_probs=33.6

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +.+.+-|.|.|++||||||+|+.|+..+     ....|+++|.+.
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~-----g~~~is~gdllr   42 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHF-----ELKHLSSGDLLR   42 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHB-----CCEEEEHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence            3456677889999999999999999876     467799999985

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=4.7e-05  Score=65.62  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=27.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |.||.| |++||||||+++.|+..|+     ...+.+|++.
T Consensus         2 p~Ivli-G~~G~GKSTig~~La~~l~-----~~fiD~D~~i   36 (165)
T d2iyva1           2 PKAVLV-GLPGSGKSTIGRRLAKALG-----VGLLDTDVAI   36 (165)
T ss_dssp             CSEEEE-CSTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHHhC-----CCeEeeccch
Confidence            556645 9999999999999999983     3457788764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.31  E-value=5.8e-05  Score=65.31  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.4

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          235 GFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       235 GIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -+.|++||||||+|+.|+..|     ....+.+|+++
T Consensus         6 il~G~~GsGKSTia~~LA~~L-----g~~~id~D~~i   37 (170)
T d1e6ca_           6 FMVGARGCGMTTVGRELARAL-----GYEFVDTDIFM   37 (170)
T ss_dssp             EEESCTTSSHHHHHHHHHHHH-----TCEEEEHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHh-----CCCEEehhhhh
Confidence            367999999999999999988     35678899875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.29  E-value=4.7e-05  Score=67.15  Aligned_cols=38  Identities=18%  Similarity=0.077  Sum_probs=32.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.||.|.||+||||||+|+.|++.+     ....|++++.+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~-----g~~~is~g~llr   44 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTGDLLR   44 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT-----CCEEEEHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeeEeccHHHH
Confidence            46789999999999999999998876     457789999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.26  E-value=7.8e-05  Score=63.55  Aligned_cols=24  Identities=29%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      |+|.||+|||||||++.|...+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            899999999999999999999864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00014  Score=67.04  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ..|.+|.++|--|+||||+|..|+..|.+.|.+|.+|.+|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3467888999999999999999999999999999999999

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.22  E-value=8.6e-05  Score=64.10  Aligned_cols=32  Identities=34%  Similarity=0.286  Sum_probs=27.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      |.|.|++||||||+++.|+..|     ....+.+|++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l-----~~~~~d~d~~   34 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFL   34 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCCEEecCch
Confidence            5677999999999999999998     3567788876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.22  E-value=7.1e-05  Score=65.20  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      .|.|.|++||||||+|+.|+..|     ....|+++|++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~-----g~~~is~gdllr   36 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY-----GTPHISTGDMFR   36 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCceeeHHHHHH
Confidence            47789999999999999999988     356788888774

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00015  Score=65.83  Aligned_cols=36  Identities=17%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      ..+|.|.|+-||||||+++.|...|...|.+|.++.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            358999999999999999999999998898886653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=9.5e-05  Score=64.17  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      -|.|.|++||||||+|+.|+..+     +...|++|+.+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~-----g~~~i~~~~l~~   36 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL-----GIPQISTGELFR   36 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-----TCCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCceEchHHHHH
Confidence            47788999999999999999888     356788888764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=9.1e-05  Score=64.16  Aligned_cols=36  Identities=22%  Similarity=0.099  Sum_probs=30.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      .|.|.|++||||||.|+.|+..+     ....|++++++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~-----~~~~i~~~~llr~   37 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY-----GIPQISTGDMLRA   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCceechhhHhHH
Confidence            46789999999999999999887     3567899888753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00014  Score=63.37  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      |-|.|++||||||+|+.|+..+     ....|++|++..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~-----g~~~i~~~d~~~   38 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF-----HAAHLATGDMLR   38 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCceEeccccce
Confidence            5577999999999999999987     467899998874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00029  Score=62.61  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      +|.|.|+-||||||+++.|+..|+..|.+++++.
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~   37 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT   37 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Confidence            6889999999999999999999999888766553

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.88  E-value=0.00025  Score=64.00  Aligned_cols=33  Identities=18%  Similarity=0.092  Sum_probs=25.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .||||+|+-||||||+|+.|+..+     ...+++.+|
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-----g~~~i~~aD   34 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-----SAVKYQLAG   34 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-----CEEECCTTH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-----CCeEEcccH
Confidence            489999999999999999987654     356666433

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00077  Score=61.78  Aligned_cols=39  Identities=26%  Similarity=0.199  Sum_probs=36.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      ...||.++|--|+||||+|-.|...|.+.|.+|.+|-.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            457899999999999999999999999999999999999

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.71  E-value=0.0036  Score=55.47  Aligned_cols=45  Identities=16%  Similarity=-0.011  Sum_probs=31.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCCeEEEeccccccCH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVT-GRKSATISIDDFYLTA  274 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~-G~~v~vISlDDFYl~~  274 (476)
                      .|-.|.|.|++|+||||+++.|...+... +..+..+....+....
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~   87 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT   87 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhh
Confidence            45578899999999999999999988653 3344444444444333

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00035  Score=65.45  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|||.|++|||||||++.|..++.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            799999999999999999988874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.60  E-value=0.00042  Score=65.26  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -+|||.|++|||||||++.|..++.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CEEEEECCCCChHHHHHHHHhcccC
Confidence            3799999999999999999987764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00039  Score=62.48  Aligned_cols=28  Identities=14%  Similarity=0.084  Sum_probs=25.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .|.+|.|.|+-||||||+++.|+..|..
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            4789999999999999999999998854

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0005  Score=64.66  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -+|||.|++|||||||++.|..+++.   ..--|..|+-
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~p---~~G~I~i~g~   76 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQP---TGGQLLLDGK   76 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCC---CcCEEEECCE
Confidence            38999999999999999999877742   3334455554

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00092  Score=63.76  Aligned_cols=48  Identities=13%  Similarity=0.149  Sum_probs=36.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc------CCCeEEEeccccccCHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT------GRKSATISIDDFYLTAEGQAK  279 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~------G~~v~vISlDDFYl~~~er~~  279 (476)
                      -+|||.|++|||||||.+.|..++...      +-++..+.++.+..+...++.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~en  116 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKEN  116 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeecc
Confidence            389999999999999999998887542      236777888887776554433

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.52  E-value=0.00051  Score=64.08  Aligned_cols=36  Identities=22%  Similarity=0.465  Sum_probs=28.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++||.|++|||||||.+.|..++.   +..--|..||.=
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~   68 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIK   68 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred             EEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEE
Confidence            899999999999999998887764   344556666653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.00056  Score=59.49  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.|+|||||||||+++.|...+
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            67799999999999998887665

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.0017  Score=58.23  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=26.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      ..+-+.||+|+||||+|++|+..+   +..+..++..+
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~~~~   87 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD   87 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH---Hhhhhcccccc
Confidence            356699999999999999999876   34454444433

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.48  E-value=0.00065  Score=63.74  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=22.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.|++|||||||.+.|..+++
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            899999999999999999988775

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.43  E-value=0.0014  Score=60.11  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .|+|+|--|+||||+|-.|...|.+.|.+|.+|-.|-
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            6889999999999999999999998999999999993

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00056  Score=64.23  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -++||.|++|||||||.+.|..+++   +..-.|..|+-=
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~   68 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQE   68 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeE
Confidence            3899999999999999999988764   344555555543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00078  Score=62.90  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.||+|||||||.+.|..+++
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            3899999999999999999988775

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.41  E-value=0.0013  Score=58.77  Aligned_cols=29  Identities=28%  Similarity=-0.010  Sum_probs=24.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ..+.++.|.||+|+||||+++.+...|..
T Consensus        44 ~~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          44 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            34456778899999999999999988865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.37  E-value=0.00086  Score=62.90  Aligned_cols=25  Identities=32%  Similarity=0.487  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ++||.|++|||||||.+.|..+++.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            8999999999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.36  E-value=0.00072  Score=63.86  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||++.|..++.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcc
Confidence            3899999999999999999987764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.36  E-value=0.00049  Score=64.37  Aligned_cols=45  Identities=27%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHc-C------------------CCeEEEeccccccCHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVT-G------------------RKSATISIDDFYLTAEG  276 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~-G------------------~~v~vISlDDFYl~~~e  276 (476)
                      -+|||.|++|||||||.+.|..+++.. |                  .++..|.+|.+..+...
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti   92 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI   92 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcch
Confidence            489999999999999999998887532 2                  13567777776665443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.36  E-value=0.00069  Score=63.19  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      ++||.||+|||||||.+.|..++.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            899999999999999999998874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0024  Score=57.06  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=25.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +-+.||+|+||||+|++|...+   +.....++.=++
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~---~~~~~~~~~~~~   71 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVL   71 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTC
T ss_pred             EEEECCCCCcHHHHHHHHHhcc---CCCcccccCccc
Confidence            4589999999999999999887   445555554333

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0023  Score=59.86  Aligned_cols=40  Identities=33%  Similarity=0.106  Sum_probs=32.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.-|.+.||+|+|||++|+.|+..+   |..+..|+..++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~~l~   82 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFV   82 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSST
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhHHhh
Confidence            356678899999999999999999877   5677777777664

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0019  Score=54.98  Aligned_cols=40  Identities=18%  Similarity=0.109  Sum_probs=33.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCCeEEEecc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISID  268 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~--G~~v~vISlD  268 (476)
                      ++-|.|-+.|-+||||+|+|++|+..|.++  |+.+.++.-|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            456999999999999999999999988875  5677777444

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0012  Score=58.27  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |.|+|||||||||+++.|...+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            44999999999999999888763

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.15  E-value=0.0031  Score=55.60  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             EEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ||+|+ |--|+||||+|..|+..|...|.+|.+|-.|-.-
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            56666 8899999999999999999889999999887443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.11  E-value=0.0014  Score=61.50  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ++||.||+|||||||.+.|..++..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            7789999999999999999988853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.11  E-value=0.00087  Score=63.01  Aligned_cols=25  Identities=32%  Similarity=0.320  Sum_probs=22.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -++||.|++|||||||.+.|..++.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcC
Confidence            3899999999999999999998874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.0043  Score=55.51  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=26.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      |-+.||+|+||||+|+.|+..+   +.....++--+..
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~---~~~~~~~~~~~~~   72 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIE   72 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH---TCCEEEEETTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCCeEeccCCccc
Confidence            4489999999999999999877   4455555544433

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.07  E-value=0.00075  Score=63.68  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +|||.|++|||||||.+.|..++.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCC
Confidence            799999999999999998877664

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.07  E-value=0.0011  Score=59.99  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=22.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ++||.|++|||||||.+.|..+++.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            8999999999999999999887753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0013  Score=57.71  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      |.|+||||||||||++.|...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5599999999999999887765

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.04  E-value=0.003  Score=58.51  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=34.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      +|+|+|--|+||||+|-.|...|.+.|.+|.+|=+|-
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            5778999999999999999999999999999999883

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.00047  Score=61.38  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=23.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .+|+|.|+-||||||+++.|+..|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            47999999999999999999988854

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.97  E-value=0.0043  Score=54.62  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             EEEEEe-CCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFS-APQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIa-G~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .||+|. +-.|+||||+|..|+..|...|.+|.+|-+|-
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            477777 77999999999999999998999999998873

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.0031  Score=60.00  Aligned_cols=38  Identities=26%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|.-|.+.||+|||||+||++|+..+.   .....+.+-.|
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~---~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc---cchhccccccc
Confidence            455677899999999999999998873   45666666555

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0037  Score=54.00  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=30.4

Q ss_pred             EEEEeCC-CCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          233 YIGFSAP-QGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       233 VIGIaG~-sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      .+-|+|- +|+||||++-.|...|.+.|.+|.++=.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            4567777 49999999999999999999999887433

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.88  E-value=0.0037  Score=55.59  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=32.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      .-++-|.|++||||||||..+...+...|.+|..++.+.
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            358889999999999999888877766788888888763

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.84  E-value=0.0018  Score=60.26  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      -++||.||+|||||||.+.|..++.   +..--|..|+--
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~   69 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQD   69 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccc
Confidence            3899999999999999999988774   334445555543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.82  E-value=0.0033  Score=56.04  Aligned_cols=23  Identities=43%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +-|.||+|+||||+|+.|...+.
T Consensus        48 lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            45999999999999999998774

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0027  Score=57.17  Aligned_cols=27  Identities=22%  Similarity=-0.005  Sum_probs=24.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      ..+|.|.|+-||||||+++.|.+.|+.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            457899999999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.80  E-value=0.0019  Score=60.49  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=27.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDD  269 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDD  269 (476)
                      -|+||.|++|||||||.+.|..++.   +..--|..|+
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g   65 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFEN   65 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETT
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECC
Confidence            3899999999999999999988764   3334455554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.70  E-value=0.0023  Score=59.57  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      -|+||.|++|||||||.+.|..++.   +.---|.+|+.
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~   64 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGK   64 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcE
Confidence            4999999999999999999987764   34455666654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.48  E-value=0.0092  Score=55.05  Aligned_cols=35  Identities=23%  Similarity=0.160  Sum_probs=27.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      .+|.-|-+.||+|||||++|++|+..+   |..+.-++
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~   72 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC   72 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcc---cccccccc
Confidence            345568899999999999999999876   44555554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0042  Score=54.56  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.|+||||||||||.+.|.+..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            46679999999999998776553

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0042  Score=55.99  Aligned_cols=24  Identities=38%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .+|-|+||||||||||.+.|....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            367799999999999998877664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.30  E-value=0.0062  Score=55.05  Aligned_cols=39  Identities=31%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYL  272 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl  272 (476)
                      +-|-|++|+|||.|+.++...+...+..+..++..+|..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   77 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH
Confidence            459999999999999999999988888888888887753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.30  E-value=0.0055  Score=56.80  Aligned_cols=40  Identities=30%  Similarity=0.087  Sum_probs=30.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ..|.-|-+.||+|+|||++|+.|...+   |..+..|+..++.
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~   79 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFV   79 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHH
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhHHhh
Confidence            345568899999999999999999776   5566666665553

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0033  Score=57.97  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ++||.|++|||||||.+.|..+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            89999999999999999888753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0056  Score=56.62  Aligned_cols=39  Identities=28%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      ..|.-|-+.||+|+|||+++++++..+   +..+..++..++
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~---~~~~~~i~~~~l   74 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI   74 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHT---TCEEEEECHHHH
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHh---CCeEEEEEchhh
Confidence            345567899999999999999999876   445555554443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.21  E-value=0.0097  Score=54.20  Aligned_cols=37  Identities=19%  Similarity=0.317  Sum_probs=30.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH-HHcCCCeEEEeccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF-RVTGRKSATISIDD  269 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL-~~~G~~v~vISlDD  269 (476)
                      ++.|+|++|+|||||+..|...+ ...|.+|..++++.
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~   74 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeecc
Confidence            67799999999999998887544 34588999999873

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0048  Score=57.47  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      .|.-|-+.||+|+|||+++++|+..+   |.....++..++
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~~~l   77 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL   77 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEHHHh
Confidence            45568899999999999999999887   455555655454

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0086  Score=57.20  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             CcE-EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecccc
Q 044604          230 PWW-YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDF  270 (476)
Q Consensus       230 ~P~-VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDF  270 (476)
                      +|. ++.+.||+|+|||.||+.|++.+.   ...+.+.+=.|
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~~l~---~~~i~~d~s~~   88 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEY   88 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGC
T ss_pred             CCceEEEEECCCcchhHHHHHHHHhhcc---CCeeEeccccc
Confidence            444 788999999999999999999883   34444444444

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0056  Score=54.05  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +-+.||+|+||||+++.|...+.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHc
Confidence            55999999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0065  Score=50.79  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++-|+|++||||||||..+....
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            488899999999999998777554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0076  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +-+.||+|+||||+|+.|...+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            44899999999999999998875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.77  E-value=0.0095  Score=58.82  Aligned_cols=31  Identities=26%  Similarity=0.248  Sum_probs=24.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCe
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKS  262 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v  262 (476)
                      =+|.|+||.||||||+...+...+...+.++
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i  189 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSERNI  189 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCCceE
Confidence            3788999999999999988777775444443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.74  E-value=0.0091  Score=52.52  Aligned_cols=27  Identities=22%  Similarity=0.132  Sum_probs=24.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +..||.+.|.-|||||||++.+.+.|.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            467999999999999999999998885

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.58  E-value=0.018  Score=49.70  Aligned_cols=38  Identities=16%  Similarity=0.125  Sum_probs=27.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH-HHHHcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDY-LFRVTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~-lL~~~G~~v~vISlD  268 (476)
                      ..++-|.|++|+||||||..+.. .+...+..+..++++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence            35788999999999999966543 344445566666665

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.012  Score=56.24  Aligned_cols=44  Identities=25%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             CCCcE-EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          228 YLPWW-YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       228 ~~~P~-VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      +.+|. ++.+.||+|+|||.+|+.|++.|-..+.+...+.+-.|-
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~   93 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   93 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            34555 788999999999999999999883222244445444554

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.02  Score=50.24  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=34.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ...||||+|..  ||||++..|..+|+..|.++.++.+-+..
T Consensus         4 ~~~vI~ITGT~--GKTTt~~~l~~iL~~~g~~~~~~gt~g~~   43 (234)
T d1e8ca3           4 NLRLVGVTGTN--GKTTTTQLLAQWSQLLGEISAVMGTVGNG   43 (234)
T ss_dssp             SSEEEEEESSS--CHHHHHHHHHHHHHHTTCCEEEEETTEEE
T ss_pred             CCeEEEEECCC--cHHHHHHHHHHHHHHCCCCeEEECccccC
Confidence            45799999987  99999999999999999999888764433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.44  E-value=0.013  Score=49.82  Aligned_cols=24  Identities=21%  Similarity=0.106  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +..+-|||.|.+|+|||||..+|.
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~   29 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAIL   29 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Confidence            446889999999999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.39  E-value=0.0094  Score=53.04  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +-|.||+|+||||+|+.+...+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            4599999999999999998876

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.24  E-value=0.022  Score=50.11  Aligned_cols=23  Identities=9%  Similarity=-0.130  Sum_probs=19.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.|.|++|+|||||++.+...+
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHC
Confidence            67799999999999998876655

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.24  E-value=0.0067  Score=59.05  Aligned_cols=34  Identities=29%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      +.|.|.|+-||||||+++.|++.|...|.++.++
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            5699999999999999999999887666666655

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.23  E-value=0.0099  Score=57.84  Aligned_cols=35  Identities=14%  Similarity=0.007  Sum_probs=28.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .+..|.|.|+-||||||+++.|++.+...+ .+..+
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            468899999999999999999999886533 34444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.15  E-value=0.013  Score=47.76  Aligned_cols=19  Identities=32%  Similarity=0.455  Sum_probs=17.0

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~  252 (476)
                      |.|.|++|||||||...|.
T Consensus         3 ivlvG~~~vGKSsLi~~l~   21 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLK   21 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6799999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.06  E-value=0.014  Score=51.42  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +-+.||+|+||||+++.|...+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            34899999999999999998774

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.98  E-value=0.019  Score=46.90  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||.+.+.
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~   26 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            568899999999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.90  E-value=0.015  Score=49.13  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=18.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .|+|.|.+|||||||.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999998775

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.76  E-value=0.01  Score=57.26  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=22.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      |.|+|++|||||||.++|...+.. +.++++|
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~-~~rivti  199 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPK-EERIISI  199 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCT-TCCEEEE
T ss_pred             EEEEeeccccchHHHHHHhhhccc-ccceeec
Confidence            678999999999999887766532 3344444

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.019  Score=52.03  Aligned_cols=36  Identities=28%  Similarity=0.125  Sum_probs=26.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEecc
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISID  268 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlD  268 (476)
                      -.|+.|+|--|||||||.+.|...  ..|.++++|.-|
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne   38 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENE   38 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEec
Confidence            347889999999999986554332  247788888654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.73  E-value=0.021  Score=53.09  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=21.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      ...+|+|.|..|+||||||+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3569999999999999999887544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.018  Score=46.55  Aligned_cols=20  Identities=35%  Similarity=0.388  Sum_probs=17.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~  253 (476)
                      |+|.|++++|||||...|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999987653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.60  E-value=0.013  Score=50.11  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=17.2

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~  252 (476)
                      |||.|.+++|||||.++|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999998763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.57  E-value=0.017  Score=47.95  Aligned_cols=23  Identities=30%  Similarity=0.226  Sum_probs=19.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +..-|.|.|.+|||||||...|.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34568899999999999987764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.50  E-value=0.022  Score=47.90  Aligned_cols=24  Identities=29%  Similarity=0.025  Sum_probs=20.5

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFAL  251 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L  251 (476)
                      +++.+-|.|.|.+|||||||...|
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHH
Confidence            355678999999999999998766

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.42  E-value=0.016  Score=50.00  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .|+|.|.+|||||||.+.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            69999999999999998885

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.39  E-value=0.02  Score=48.71  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=18.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +|+|.|.+|+|||||.+.|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~   26 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLL   26 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            69999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.34  E-value=0.014  Score=49.71  Aligned_cols=19  Identities=26%  Similarity=0.480  Sum_probs=17.3

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~  252 (476)
                      |||.|.+++|||||.+.|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999988774

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.046  Score=51.10  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      -.|+-|.|++||||||||-.+.....+.|..|+.|.+-+-+.+
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~   96 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP   96 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCH
Confidence            3589999999999999998888777777888877777665543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.31  E-value=0.018  Score=49.96  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -++-|+|++||||||||..+..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3788999999999999977654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.021  Score=47.98  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=18.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +|+|.|.+++|||||.++|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~   26 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLL   26 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999998875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.28  E-value=0.034  Score=50.34  Aligned_cols=36  Identities=25%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHH-HHHHHHHHHcCC---CeEEEe
Q 044604          229 LPWWYIGFSAPQGCGKTTLA-FALDYLFRVTGR---KSATIS  266 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA-~~L~~lL~~~G~---~v~vIS  266 (476)
                      ..|+  .|.|+.||||||++ ..+..++...+.   ++.+++
T Consensus        14 ~~~~--lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          14 TGPC--LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             SSEE--EECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CCCE--EEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            3464  47799999999874 667777765442   566665

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.044  Score=48.71  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=22.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -|-.+-+.||.|+||||+|+.+...|.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            355677899999999999999998773

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.026  Score=49.34  Aligned_cols=26  Identities=19%  Similarity=-0.017  Sum_probs=21.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +--++-|+|++||||||||..+....
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999998776543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.00  E-value=0.041  Score=53.72  Aligned_cols=24  Identities=50%  Similarity=0.491  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      ..+.+.||+|+|||++|..|+..+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            478899999999999999999988

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.052  Score=48.74  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      |-.+-|.|++|+||||+|+.+...+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            44566999999999999999888775

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.97  E-value=0.024  Score=49.83  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      -++-|+|++||||||||-.+....
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            588899999999999997665543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.96  E-value=0.042  Score=48.91  Aligned_cols=27  Identities=33%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +.-|||.|-.++|||||+.+|......
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~   29 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAA   29 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhh
Confidence            466999999999999999988766654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.025  Score=46.69  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|+|.|.+++|||||.++|.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            458999999999999987765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.90  E-value=0.028  Score=50.51  Aligned_cols=25  Identities=20%  Similarity=-0.037  Sum_probs=20.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYL  254 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~l  254 (476)
                      ++.||+|.|.+.+|||||...|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            3456999999999999999887544

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.86  E-value=0.018  Score=55.98  Aligned_cols=27  Identities=30%  Similarity=0.226  Sum_probs=21.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .+.|.|.|+-||||||+++.|+..+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC----
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            356999999999999999999988864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.82  E-value=0.032  Score=46.55  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...|.
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFS   36 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            668899999999999998765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.055  Score=48.63  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc----------CCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT----------GRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~----------G~~v~vISlDDFY  271 (476)
                      ++-|+|++|+|||||+..|+..+..-          +.+|..++.++..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~   79 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP   79 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchH
Confidence            55699999999999998887765421          2367778887754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.76  E-value=0.021  Score=48.14  Aligned_cols=19  Identities=37%  Similarity=0.585  Sum_probs=17.5

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~  252 (476)
                      |+|.|.+++|||||.+.|.
T Consensus         3 I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999998874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.75  E-value=0.043  Score=50.36  Aligned_cols=36  Identities=22%  Similarity=0.172  Sum_probs=23.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHH-HHHHHHHHHcCC---CeEEEe
Q 044604          229 LPWWYIGFSAPQGCGKTTLA-FALDYLFRVTGR---KSATIS  266 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA-~~L~~lL~~~G~---~v~vIS  266 (476)
                      ..|+  -|.|+.||||||++ ..+..++...+.   ++.+++
T Consensus        24 ~g~~--lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt   63 (318)
T d1pjra1          24 EGPL--LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT   63 (318)
T ss_dssp             SSCE--EEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred             CCCE--EEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEe
Confidence            3453  47799999999875 666777754322   455554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.73  E-value=0.013  Score=50.73  Aligned_cols=25  Identities=20%  Similarity=0.123  Sum_probs=21.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      --++-|+|++|+||||||..++..+
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999998877654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.73  E-value=0.029  Score=49.89  Aligned_cols=20  Identities=25%  Similarity=0.321  Sum_probs=17.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.|.|+||+||||+|..|.
T Consensus        16 gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            48899999999999997654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.019  Score=47.93  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=20.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ...+-|+|.|.+++|||||.++|.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHh
Confidence            345779999999999999998774

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.69  E-value=0.042  Score=55.07  Aligned_cols=27  Identities=33%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .|-=|-+.||+|||||.+|+.|+..+.
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhC
Confidence            355688999999999999999999883

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.043  Score=52.75  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=24.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      +.|.|++|||||++...|...+-.+|..++++
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            78999999999999866554444557666655

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.48  E-value=0.036  Score=46.16  Aligned_cols=21  Identities=19%  Similarity=0.197  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|++|||||||.+.|.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            458899999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.47  E-value=0.036  Score=47.51  Aligned_cols=21  Identities=38%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .|.|.|.++||||||...|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999887753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.046  Score=46.34  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=20.3

Q ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          228 YLPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       228 ~~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +.+.+-|.|.|.+|+|||||.+.+.
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~   27 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFI   27 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHH
Confidence            3455778899999999999987654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.043  Score=46.76  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||.+.|.
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHh
Confidence            458899999999999987664

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.20  E-value=0.05  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+-|.|.|.+|+|||||...+.
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~   23 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFC   23 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4568899999999999997654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.15  E-value=0.046  Score=46.03  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...|.
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~   26 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYA   26 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999998764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.00  E-value=0.029  Score=49.99  Aligned_cols=20  Identities=25%  Similarity=0.293  Sum_probs=17.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.|.|+||+||||+|..|.
T Consensus        17 gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47899999999999997654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.89  E-value=0.069  Score=47.42  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .-|||.|-..+|||||+.+|...+..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~   29 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAE   29 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHH
Confidence            45999999999999999988766543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.019  Score=47.42  Aligned_cols=24  Identities=25%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      +..|.|+.||||||+..+|...|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            667899999999999999998873

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.83  E-value=0.045  Score=45.76  Aligned_cols=20  Identities=25%  Similarity=0.225  Sum_probs=17.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.|.|++|||||||...|.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47789999999999988774

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.82  E-value=0.087  Score=49.33  Aligned_cols=43  Identities=26%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccC
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLT  273 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~  273 (476)
                      ..|+-|.|++||||||||..+.....+.|..|+-|-+-+-+.+
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~   99 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP   99 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCH
Confidence            4599999999999999998888877777878777766665543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.70  E-value=0.021  Score=53.91  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      |-|.|++|+||||+|+.|..+|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            6789999999999999999988

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.055  Score=45.29  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=17.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~   23 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFV   23 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999987653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.058  Score=45.99  Aligned_cols=23  Identities=17%  Similarity=0.046  Sum_probs=19.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +.+-|.|.|.+|+|||||...+.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~   26 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYT   26 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999987664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=0.048  Score=47.23  Aligned_cols=21  Identities=29%  Similarity=0.142  Sum_probs=17.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -|.|.|++|||||||...|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999877653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.53  E-value=0.043  Score=48.38  Aligned_cols=20  Identities=25%  Similarity=0.288  Sum_probs=17.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      =|.|.|+||+||||+|..|.
T Consensus        17 gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            58899999999999996544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.052  Score=45.40  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=18.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+-|.|.|.+|+|||||...+.
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~   25 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFV   25 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHH
Confidence            3568899999999999987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.067  Score=44.68  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -+-|.|.|.+|+|||||...+.
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~   24 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            4678999999999999987654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.43  E-value=0.063  Score=44.83  Aligned_cols=21  Identities=10%  Similarity=0.033  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.+.|.+|+|||||...+.
T Consensus         3 iKv~liG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999997654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.055  Score=45.55  Aligned_cols=21  Identities=19%  Similarity=0.215  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...+.
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~   26 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            568999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.38  E-value=0.064  Score=44.94  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...+.
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~   23 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999997754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.063  Score=45.39  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~   25 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFT   25 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            558899999999999997764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.13  E-value=0.061  Score=44.90  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~   23 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFV   23 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            347899999999999997764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.075  Score=44.47  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+-|.|.|.+|+|||+|...+.
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~   24 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            4668899999999999987654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.06  E-value=0.064  Score=44.91  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=18.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+-|.|.|.+|+|||||.+.+.
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~   25 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFV   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            3568899999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.072  Score=44.54  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         5 ~KivlvG~~~vGKTsli~~~~   25 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFT   25 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999987654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.07  Score=44.88  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      |-|.|.|.+|+|||||...+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHh
Confidence            458899999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.075  Score=44.61  Aligned_cols=21  Identities=14%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      |-|.|.|.+|+|||||...+.
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            568899999999999997664

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.077  Score=44.41  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         4 fKivlvG~~~vGKTsLi~r~~   24 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYC   24 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            568899999999999997654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.066  Score=44.79  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~   24 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            568899999999999987664

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.90  E-value=0.061  Score=52.40  Aligned_cols=28  Identities=32%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      .+|--|-..||+|+|||-+|+.|+..+.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhcc
Confidence            3455678889999999999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.82  E-value=0.077  Score=45.10  Aligned_cols=21  Identities=24%  Similarity=0.196  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...+.
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~   23 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYV   23 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            347899999999999987664

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.08  Score=44.42  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||.+.+.
T Consensus         7 fKi~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            569999999999999987653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.073  Score=44.73  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||.+.+.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~   26 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFT   26 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            558899999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.086  Score=44.38  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...+.
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999997664

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.50  E-value=0.022  Score=47.07  Aligned_cols=21  Identities=24%  Similarity=0.145  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -|++.|.+++|||||.++|..
T Consensus         2 kI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999988754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.066  Score=44.48  Aligned_cols=20  Identities=30%  Similarity=0.311  Sum_probs=17.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.|.|.+|+|||||.+.+.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~   21 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFM   21 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47889999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.088  Score=44.36  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=17.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         4 ~KivvvG~~~vGKTsli~r~~   24 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFT   24 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHh
Confidence            347799999999999987653

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.31  E-value=0.16  Score=44.13  Aligned_cols=31  Identities=16%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSAT  264 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~v  264 (476)
                      .+|||+|.  .||||++..|..+|+..|.++..
T Consensus        13 ~~I~ITGT--nGKTTt~~~l~~iL~~~~~~~~~   43 (215)
T d1p3da3          13 HGIAVAGT--HGKTTTTAMISMIYTQAKLDPTF   43 (215)
T ss_dssp             EEEEEESS--SCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHhCCCCceE
Confidence            58999995  68999999999999987776544

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.17  Score=43.42  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=28.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      .||||+|.  .||||++..|..+|+..|..+.+...
T Consensus        12 ~vI~VTGT--~GKTTt~~~l~~iL~~~g~~~~~~~~   45 (204)
T d2jfga3          12 PIVAITGS--NGKSTVTTLVGEMAKAAGVNVGVGGN   45 (204)
T ss_dssp             CEEEEECS--SSHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHhcCCCcccCCc
Confidence            48999997  58999999999999988877665543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.09  E-value=0.1  Score=45.70  Aligned_cols=22  Identities=36%  Similarity=0.299  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..-|||.|-..+|||||+..|.
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~   29 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAIT   29 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEEccCCcHHHHHHHHH
Confidence            3679999999999999998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.088  Score=44.19  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||.+.+.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~   26 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFI   26 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            678999999999999997664

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.96  E-value=0.065  Score=45.42  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFAL  251 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L  251 (476)
                      +-+-|.|.|.+|||||||...|
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHH
Confidence            3467889999999999998765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=0.16  Score=49.12  Aligned_cols=34  Identities=24%  Similarity=0.149  Sum_probs=23.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH-HHHH---cCCCeEEEe
Q 044604          233 YIGFSAPQGCGKTTLAFALDY-LFRV---TGRKSATIS  266 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~-lL~~---~G~~v~vIS  266 (476)
                      +..|.|+.|+||||+...+.. +++.   .|.++.+..
T Consensus       165 ~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             eEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            577999999999999755444 4332   245666555

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.73  E-value=0.071  Score=45.60  Aligned_cols=21  Identities=33%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .-|||.|.+.+|||||.++|.
T Consensus         6 inIaiiG~~naGKSTL~n~L~   26 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLT   26 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEEeCCCCcHHHHHHHHH
Confidence            469999999999999998875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.68  E-value=0.083  Score=48.56  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=17.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +..+.|+||+|||||...|.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHhhc
Confidence            56789999999999998774

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.18  Score=45.28  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +.+.|++|+|||++++.|+..+..
T Consensus        46 ~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          46 PVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEecCCcccHHHHHHHHHHHHh
Confidence            458899999999999999988864

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.65  E-value=0.18  Score=47.21  Aligned_cols=42  Identities=24%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ...|+-|.|++||||||||..+.......|..|+-|-+-+-+
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~  100 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL  100 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence            446899999999999999988777766667777766666644

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.096  Score=44.01  Aligned_cols=20  Identities=20%  Similarity=0.316  Sum_probs=17.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.|.|.+|+|||+|...+.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~   23 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFL   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47799999999999987654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.58  E-value=0.093  Score=48.07  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..++-|.|.|.+|+|||||...|.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHh
Confidence            457889999999999999998774

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.078  Score=45.39  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=19.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..+-|.|.|.+|+|||||...+.
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHh
Confidence            45669999999999999986653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=0.098  Score=43.74  Aligned_cols=21  Identities=10%  Similarity=0.192  Sum_probs=17.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|+|||||...+.
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~   24 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            568899999999999987653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=0.099  Score=45.07  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|..|||||||...+.
T Consensus         7 ~KivvvG~~~vGKTsli~~l~   27 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFS   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHh
Confidence            458899999999999987664

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.26  E-value=0.12  Score=43.84  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...++
T Consensus         3 iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            457899999999999999883

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.12  Score=43.59  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .+-|.|.|.+|+|||||...|.
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~   28 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFT   28 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            4568999999999999997664

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.12  Score=43.69  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      |-|.+.|.+|+|||||...+.
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            568899999999999997765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.22  E-value=0.13  Score=43.20  Aligned_cols=22  Identities=18%  Similarity=0.296  Sum_probs=18.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -+-|.|.|.+|+|||||...+.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~   25 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            3568899999999999987764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.092  Score=44.30  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=16.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.|.|.+|+|||||...+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~   23 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNS   23 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36688999999999986553

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.14  E-value=0.12  Score=40.71  Aligned_cols=34  Identities=12%  Similarity=-0.020  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHH-HHHHHHHHHcCCCeEEEe
Q 044604          233 YIGFSAPQGCGKTTLA-FALDYLFRVTGRKSATIS  266 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA-~~L~~lL~~~G~~v~vIS  266 (476)
                      .+-|.++.|||||+.+ ..+...+...+.++.++.
T Consensus         9 ~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            4568899999999877 344444444566666554

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.02  E-value=0.2  Score=48.12  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=27.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFY  271 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFY  271 (476)
                      ++-+.||+|+|||.+|+.|+..+.. +.....|+.-+++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~-~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGG-KDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHT-TSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcC-CCCeEEEEhhHhh
Confidence            4556899999999999999998853 1122445555555

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.61  E-value=0.083  Score=44.54  Aligned_cols=21  Identities=24%  Similarity=0.445  Sum_probs=9.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...|.
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEEECCCCC----------
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999987654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.1  Score=48.99  Aligned_cols=24  Identities=21%  Similarity=0.147  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      +-.||+|.|++++|||||...|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcC
Confidence            345999999999999999987654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.47  E-value=0.23  Score=46.42  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +.+.|++|+|||++++.|+..+..
T Consensus        42 ~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEECCCCCcHHHHHHHHHHHHHh
Confidence            448999999999999999988765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=88.31  E-value=0.1  Score=43.91  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=18.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -+-|.|.|.+|||||||.+.+.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4667799999999999997654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.29  E-value=0.17  Score=42.53  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=18.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -+-|.+.|.+|+|||||...+.
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~   25 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFF   25 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHH
Confidence            3668889999999999987654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.15  E-value=0.12  Score=50.62  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      ..|+-|+|.|.+|+|||||.+.|.
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            357899999999999999999885

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.06  E-value=0.33  Score=42.80  Aligned_cols=28  Identities=7%  Similarity=-0.125  Sum_probs=24.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      .+.-+-+.|++|+||||+|..|...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~   41 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEK   41 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4567889999999999999999988754

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.92  E-value=0.28  Score=41.70  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=20.0

Q ss_pred             EeCCCCCcHHHHHHHHH-HHHHHcCCCeEEE
Q 044604          236 FSAPQGCGKTTLAFALD-YLFRVTGRKSATI  265 (476)
Q Consensus       236 IaG~sGSGKTTLA~~L~-~lL~~~G~~v~vI  265 (476)
                      |++|+|+|||.++..+. ..+...+.++.+|
T Consensus        28 v~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          28 IVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             EEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            66899999998775444 3444455555444

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.89  E-value=0.16  Score=41.06  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      +.-|.+|.|||||+++-.   .+...|.++.++.
T Consensus        10 ~~ll~apTGsGKT~~~~~---~~~~~~~~vli~~   40 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLN   40 (136)
T ss_dssp             EEEEECCTTSCTTTHHHH---HHHTTTCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHH---HHHHcCCcEEEEc
Confidence            455789999999997633   2334566766554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=0.095  Score=44.21  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      |-|.|.|.+|+|||||...+.
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999986543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.44  E-value=0.14  Score=43.89  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.+.|.+|+|||+|...+.
T Consensus         4 iKvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHH
Confidence            458899999999999986653

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=0.17  Score=43.19  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=26.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEE
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATI  265 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vI  265 (476)
                      .||||+|..  ||||++..|..+|+..|..+.+.
T Consensus         3 kvI~VTGTn--GKTTt~~mi~~iL~~~g~~~~~~   34 (214)
T d1gg4a4           3 RVVALTGSS--GKTSVKEMTAAILSQCGNTLYTA   34 (214)
T ss_dssp             EEEEEECSS--CHHHHHHHHHHHHTTTSCEEECC
T ss_pred             CEEEEeCCC--cHHHHHHHHHHHHHhCCCCEEEe
Confidence            499999985  79999999999998877765543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.37  E-value=0.2  Score=43.35  Aligned_cols=31  Identities=29%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHH-HHHHHHHcCCCeEEE
Q 044604          234 IGFSAPQGCGKTTLAFA-LDYLFRVTGRKSATI  265 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~-L~~lL~~~G~~v~vI  265 (476)
                      +-|++|+|||||+.+.. +...+. .+.++.+|
T Consensus        43 ~il~apTGsGKT~~a~l~i~~~~~-~~~~vl~l   74 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYV   74 (202)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             EEEEcCCCCchhHHHHHHHHHHhh-ccCcceee
Confidence            44899999999988732 333332 24455443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.30  E-value=0.12  Score=48.34  Aligned_cols=21  Identities=43%  Similarity=0.545  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      -|+|.|..|+|||||+..|..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            589999999999999988743

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.07  E-value=0.21  Score=45.70  Aligned_cols=23  Identities=17%  Similarity=0.008  Sum_probs=18.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      .|. |.|+|.++||||||..+|..
T Consensus        26 ~P~-ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LPQ-IAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCE-EEEEEBTTSCHHHHHHHHHT
T ss_pred             CCe-EEEEcCCCCCHHHHHHHHhC
Confidence            454 66999999999999988753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.95  E-value=0.15  Score=43.38  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=16.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|.+.|.+|+|||+|...+.
T Consensus         4 KivliG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36789999999999987553

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.93  E-value=0.13  Score=48.40  Aligned_cols=24  Identities=33%  Similarity=0.331  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .-|||.|..|+|||||+.+|...-
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            469999999999999998886543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=0.22  Score=42.52  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 044604          231 WWYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -+-|.|.|.+|+|||||...+.
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~   26 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFL   26 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999987553

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.65  E-value=0.19  Score=44.61  Aligned_cols=33  Identities=27%  Similarity=0.583  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEe
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATIS  266 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vIS  266 (476)
                      +.|.+|+|+|||+++-.....+...|.++.+|.
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            346789999999877555444444566766553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=86.60  E-value=0.16  Score=43.79  Aligned_cols=21  Identities=43%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      .-|||.|-..+|||||..+|.
T Consensus         6 inIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEeccCCcHHHHHHHHH
Confidence            358999999999999998884

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.21  E-value=0.21  Score=41.68  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=17.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.+.|..|+|||||.+.+.
T Consensus         3 ~KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            347799999999999987654

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.11  E-value=0.37  Score=41.56  Aligned_cols=30  Identities=13%  Similarity=0.067  Sum_probs=25.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCe
Q 044604          231 WWYIGFSAPQGCGKTTLAFALDYLFRVTGRKS  262 (476)
Q Consensus       231 P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v  262 (476)
                      +.+|||+|.  .||||++..|..+|+..|.++
T Consensus        14 ~~~iAITGT--nGKTTt~~~l~~iL~~~g~~~   43 (207)
T d1j6ua3          14 KEEFAVTGT--DGKTTTTAMVAHVLKHLRKSP   43 (207)
T ss_dssp             CCEEEEECS--SSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECC--CCHHHHHHHHHHHHHhCCCCC
Confidence            458999996  689999999999999876553

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.90  E-value=0.28  Score=46.49  Aligned_cols=26  Identities=23%  Similarity=0.112  Sum_probs=21.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLFRVT  258 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL~~~  258 (476)
                      -+||-|++|+|||||+..|..-....
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            58999999999999998887766543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.74  E-value=0.25  Score=44.96  Aligned_cols=27  Identities=19%  Similarity=0.036  Sum_probs=23.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +...-|||.|-+.+|||||+..|...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~   30 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKC   30 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHc
Confidence            345789999999999999998887665

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.72  E-value=0.35  Score=44.79  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEec
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISI  267 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISl  267 (476)
                      +-.+|||+|-.  ||||++..|..+|+..|.+|.+++.
T Consensus        38 ~lkvI~VTGTN--GKtST~~~i~~IL~~~G~kvG~~tS   73 (296)
T d2gc6a2          38 QGRYIHVTGTN--GKGSAANAIAHVLEASGLTVGLYTA   73 (296)
T ss_dssp             SSCEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             hCCEEEEeccC--cHHHHHHHHHHHHHhcCCceeeeec
Confidence            34589999975  7999999999999999999988755

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.51  E-value=0.2  Score=41.88  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||...+.
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~   23 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMR   23 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            347799999999999998774

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.14  E-value=0.34  Score=44.13  Aligned_cols=40  Identities=15%  Similarity=0.218  Sum_probs=26.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCeEEEeccccccCHH
Q 044604          234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAE  275 (476)
Q Consensus       234 IGIaG~sGSGKTTLA~~L~~lL~~~G~~v~vISlDDFYl~~~  275 (476)
                      |.|.|+.|+||+++|+.|...-..  .....+.+|.-..+..
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~--~~~~~~~~~~~~~~~~   65 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDR--SKEPFVALNVASIPRD   65 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTT--TTSCEEEEETTTSCHH
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCC--cccccccchhhhhhhc
Confidence            567899999999999999865322  2334445554444443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.11  E-value=0.24  Score=44.10  Aligned_cols=24  Identities=21%  Similarity=-0.054  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .-|||.|-.++|||||+..|....
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~   27 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDR   27 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHc
Confidence            559999999999999998775443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.01  E-value=0.23  Score=43.95  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +-|.|.|.+|||||||.+.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            457899999999999987764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.75  E-value=0.31  Score=44.75  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=17.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      -|+|.|.++||||||..+|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHh
Confidence            46799999999999998776

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=84.47  E-value=0.11  Score=47.97  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=17.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +..+.|+||+|||||..+|.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHC
T ss_pred             eEEEECCCCccHHHHHHhhc
Confidence            45588999999999998775

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.38  E-value=0.21  Score=45.55  Aligned_cols=26  Identities=27%  Similarity=0.208  Sum_probs=21.1

Q ss_pred             CcEE-EEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWY-IGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~V-IGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +|.| |+|.|-+++|||||+..|....
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~   48 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLT   48 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHT
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHc
Confidence            3444 9999999999999998885443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.28  E-value=0.31  Score=45.49  Aligned_cols=23  Identities=22%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      +-.|.|+.||||||+..+|.-.|
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            56799999999999999998665

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=82.59  E-value=0.39  Score=43.14  Aligned_cols=26  Identities=19%  Similarity=-0.155  Sum_probs=21.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 044604          230 PWWYIGFSAPQGCGKTTLAFALDYLF  255 (476)
Q Consensus       230 ~P~VIGIaG~sGSGKTTLA~~L~~lL  255 (476)
                      .-+-|+|+|-..+|||||+.+|....
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHc
Confidence            34558999999999999998885443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=81.96  E-value=0.9  Score=41.01  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 044604          232 WYIGFSAPQGCGKTTLAFALDYLFR  256 (476)
Q Consensus       232 ~VIGIaG~sGSGKTTLA~~L~~lL~  256 (476)
                      -.|.|-||+++|||++|..|...|.
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHhC
Confidence            3577899999999999999998883

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.12  E-value=0.33  Score=42.90  Aligned_cols=20  Identities=30%  Similarity=0.154  Sum_probs=17.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 044604          233 YIGFSAPQGCGKTTLAFALD  252 (476)
Q Consensus       233 VIGIaG~sGSGKTTLA~~L~  252 (476)
                      +|-|.|++.||||.+|..|.
T Consensus         1 iiLVtGGarSGKS~~AE~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHH
Confidence            47899999999999998763

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.93  E-value=0.48  Score=42.42  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCcHHHH--HHHHHHHHHHcCCCeEEE
Q 044604          233 YIGFSAPQGCGKTTL--AFALDYLFRVTGRKSATI  265 (476)
Q Consensus       233 VIGIaG~sGSGKTTL--A~~L~~lL~~~G~~v~vI  265 (476)
                      .+-|.|++|||||+.  ...+...+. .|.++.++
T Consensus        11 ~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi   44 (305)
T d2bmfa2          11 LTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLIL   44 (305)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEE
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEE
Confidence            466899999999963  244444443 36666555

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.60  E-value=0.6  Score=45.60  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=18.6

Q ss_pred             EeCCCCCcHHHHHHHHHHHHHH
Q 044604          236 FSAPQGCGKTTLAFALDYLFRV  257 (476)
Q Consensus       236 IaG~sGSGKTTLA~~L~~lL~~  257 (476)
                      +.|++|+|||+++..|+..+..
T Consensus        48 lvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          48 LIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            4599999999999998877654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.12  E-value=0.53  Score=43.50  Aligned_cols=25  Identities=20%  Similarity=0.082  Sum_probs=21.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 044604          229 LPWWYIGFSAPQGCGKTTLAFALDY  253 (476)
Q Consensus       229 ~~P~VIGIaG~sGSGKTTLA~~L~~  253 (476)
                      ...+-|||.|-+.||||||-.+|..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC
Confidence            3457899999999999999988874